CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors

Genome Research

Volumn 25, Issue 12, 2015, Pages 1812-1824

  Hashimoto, Kosuke ^a   Suzuki, Ana Maria ^a   Dos Santos, Alexandre ^b,c   Desterke, Christophe ^b,c   Collino, Agnese ^d   Ghisletti, Serena ^d   Braun, Emilie ^b,c   Bonetti, Alessandro ^a   Fort, Alexandre ^a   Qin, Xian Yang ^a   Radælli, Enrico ^e   Kaczkowski, Bogumil ^a   Forrest, Alistair R R ^a   Kojima, Soichi ^a   Samuel, Didier ^b,c   Natoli, Gioacchino ^d   Buendia, Marie Annick ^b,c   Faivre, Jamila ^b,c   Carninci, Piero ^a  

^a RIKEN   (Japan)

^b HÔPITAL PAUL BROUSSE   (France)

^c UNIVERSITÉ PARIS SACLAY   (France)

^d EUROPEAN INSTITUTE OF ONCOLOGY   (Italy)

^e UNIVERSITY OF LEUVEN   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

MAX PROTEIN; MYC PROTEIN; TRANSCRIPTOME; UNTRANSLATED RNA; MULTIDRUG RESISTANCE PROTEIN; P-GLYCOPROTEIN 2; PROTEIN BINDING; TRANSCRIPTION FACTOR;

ADULT; ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; CANCER GENETICS; CANCER RECURRENCE; CANCER RISK; CHROMATIN IMMUNOPRECIPITATION; CLINICAL ARTICLE; CLINICAL FEATURE; CONTROLLED STUDY; CORRELATIONAL STUDY; GENE EXPRESSION; GENETIC HETEROGENEITY; HUMAN; HUMAN TISSUE; LIVER CELL CARCINOMA; LONG TERMINAL REPEAT; MALE; MOUSE; NONHUMAN; PRIORITY JOURNAL; UPREGULATION; VIRUS CARCINOGENESIS; VIRUS ETIOLOGY; ANIMAL; BIOLOGY; CARCINOMA, HEPATOCELLULAR; CELL TRANSFORMATION; DISEASE COURSE; DISEASE MODEL; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; KNOCKOUT MOUSE; LIVER NEOPLASMS; METABOLISM; PATHOLOGY; PROCEDURES; PROMOTER REGION; TRANSCRIPTION INITIATION SITE; TUMOR CELL LINE; VIRUS CELL TRANSFORMATION;

ANIMALS; CARCINOMA, HEPATOCELLULAR; CELL LINE, TUMOR; CELL TRANSFORMATION, NEOPLASTIC; CELL TRANSFORMATION, VIRAL; COMPUTATIONAL BIOLOGY; DISEASE MODELS, ANIMAL; DISEASE PROGRESSION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, NEOPLASTIC; HUMANS; LIVER NEOPLASMS; MICE; MICE, KNOCKOUT; P-GLYCOPROTEINS; PROMOTER REGIONS, GENETIC; PROTEIN BINDING; RNA, UNTRANSLATED; TERMINAL REPEAT SEQUENCES; TRANSCRIPTION FACTORS; TRANSCRIPTION INITIATION SITE; TRANSCRIPTOME;

EID: 84956691878     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.191031.115     Document Type: Article

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