-
1
-
-
0035066348
-
How jumping genes were discovered
-
Fedoroff N, (2001) How jumping genes were discovered. Nat Struct Biol 8: 300-301.
-
(2001)
Nat Struct Biol
, vol.8
, pp. 300-301
-
-
Fedoroff, N.1
-
2
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. (2001) Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
-
3
-
-
84855281420
-
Repetitive elements may comprise over two-thirds of the human genome
-
doi:10.1371/journal.pgen.1002384
-
de Koning AP, Gu W, Castoe TA, Batzer MA, Pollock DD, (2011) Repetitive elements may comprise over two-thirds of the human genome. PLoS Genet 7: e1002384 doi:10.1371/journal.pgen.1002384.
-
(2011)
PLoS Genet
, vol.7
-
-
de Koning, A.P.1
Gu, W.2
Castoe, T.A.3
Batzer, M.A.4
Pollock, D.D.5
-
4
-
-
77953892366
-
Mobile interspersed repeats are major structural variants in the human genome
-
Huang CR, Schneider AM, Lu Y, Niranjan T, Shen P, et al. (2010) Mobile interspersed repeats are major structural variants in the human genome. Cell 141: 1171-1182.
-
(2010)
Cell
, vol.141
, pp. 1171-1182
-
-
Huang, C.R.1
Schneider, A.M.2
Lu, Y.3
Niranjan, T.4
Shen, P.5
-
5
-
-
77953880842
-
LINE-1 retrotransposition activity in human genomes
-
Beck CR, Collier P, Macfarlane C, Malig M, Kidd JM, et al. (2010) LINE-1 retrotransposition activity in human genomes. Cell 141: 1159-1170.
-
(2010)
Cell
, vol.141
, pp. 1159-1170
-
-
Beck, C.R.1
Collier, P.2
Macfarlane, C.3
Malig, M.4
Kidd, J.M.5
-
6
-
-
77955160719
-
High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes
-
Ewing AD, Kazazian HH Jr, (2010) High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes. Genome Res 20: 1262-1270.
-
(2010)
Genome Res
, vol.20
, pp. 1262-1270
-
-
Ewing, A.D.1
Kazazian Jr., H.H.2
-
7
-
-
77953889472
-
Natural mutagenesis of human genomes by endogenous retrotransposons
-
Iskow RC, McCabe MT, Mills RE, Torene S, Pittard WS, et al. (2010) Natural mutagenesis of human genomes by endogenous retrotransposons. Cell 141: 1253-1261.
-
(2010)
Cell
, vol.141
, pp. 1253-1261
-
-
Iskow, R.C.1
McCabe, M.T.2
Mills, R.E.3
Torene, S.4
Pittard, W.S.5
-
8
-
-
0023867459
-
Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man
-
Kazazian HH Jr, Wong C, Youssoufian H, Scott AF, Phillips DG, et al. (1988) Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man. Nature 332: 164-166.
-
(1988)
Nature
, vol.332
, pp. 164-166
-
-
Kazazian Jr., H.H.1
Wong, C.2
Youssoufian, H.3
Scott, A.F.4
Phillips, D.G.5
-
9
-
-
22844438250
-
A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease
-
Chen JM, Stenson PD, Cooper DN, Ferec C, (2005) A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease. Hum Genet 117: 411-427.
-
(2005)
Hum Genet
, vol.117
, pp. 411-427
-
-
Chen, J.M.1
Stenson, P.D.2
Cooper, D.N.3
Ferec, C.4
-
10
-
-
0035252410
-
Alternative splicing: increasing diversity in the proteomic world
-
Graveley BR, (2001) Alternative splicing: increasing diversity in the proteomic world. Trends Genet 17: 100-107.
-
(2001)
Trends Genet
, vol.17
, pp. 100-107
-
-
Graveley, B.R.1
-
11
-
-
75849145292
-
Expansion of the eukaryotic proteome by alternative splicing
-
Nilsen TW, Graveley BR, (2010) Expansion of the eukaryotic proteome by alternative splicing. Nature 463: 457-463.
-
(2010)
Nature
, vol.463
, pp. 457-463
-
-
Nilsen, T.W.1
Graveley, B.R.2
-
12
-
-
55549117831
-
Evolution of the mammalian transcription factor binding repertoire via transposable elements
-
Bourque G, Leong B, Vega VB, Chen X, Lee YL, et al. (2008) Evolution of the mammalian transcription factor binding repertoire via transposable elements. Genome Res 18: 1752-1762.
-
(2008)
Genome Res
, vol.18
, pp. 1752-1762
-
-
Bourque, G.1
Leong, B.2
Vega, V.B.3
Chen, X.4
Lee, Y.L.5
-
13
-
-
84863393570
-
Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages
-
Schmidt D, Schwalie PC, Wilson MD, Ballester B, Goncalves A, et al. (2012) Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages. Cell 148: 335-348.
-
(2012)
Cell
, vol.148
, pp. 335-348
-
-
Schmidt, D.1
Schwalie, P.C.2
Wilson, M.D.3
Ballester, B.4
Goncalves, A.5
-
14
-
-
0035181529
-
What does a worm want with 20,000 genes?
-
Hodgkin J, (2001) What does a worm want with 20,000 genes? Genome Biol 2: COMMENT2008.
-
(2001)
Genome Biol
, vol.2
-
-
Hodgkin, J.1
-
15
-
-
56749098074
-
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
-
Pan Q, Shai O, Lee LJ, Frey BJ, Blencowe BJ, (2008) Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat Genet 40: 1413-1415.
-
(2008)
Nat Genet
, vol.40
, pp. 1413-1415
-
-
Pan, Q.1
Shai, O.2
Lee, L.J.3
Frey, B.J.4
Blencowe, B.J.5
-
16
-
-
79551610956
-
Genome-wide analysis of alternative splicing in Caenorhabditis elegans
-
Ramani AK, Calarco JA, Pan Q, Mavandadi S, Wang Y, et al. (2011) Genome-wide analysis of alternative splicing in Caenorhabditis elegans. Genome Res 21: 342-348.
-
(2011)
Genome Res
, vol.21
, pp. 342-348
-
-
Ramani, A.K.1
Calarco, J.A.2
Pan, Q.3
Mavandadi, S.4
Wang, Y.5
-
17
-
-
0035865239
-
Evolutionary analyses of the human genome
-
Li WH, Gu Z, Wang H, Nekrutenko A, (2001) Evolutionary analyses of the human genome. Nature 409: 847-849.
-
(2001)
Nature
, vol.409
, pp. 847-849
-
-
Li, W.H.1
Gu, Z.2
Wang, H.3
Nekrutenko, A.4
-
18
-
-
0035500898
-
Transposable elements are found in a large number of human protein-coding genes
-
Nekrutenko A, Li WH, (2001) Transposable elements are found in a large number of human protein-coding genes. Trends Genet 17: 619-621.
-
(2001)
Trends Genet
, vol.17
, pp. 619-621
-
-
Nekrutenko, A.1
Li, W.H.2
-
19
-
-
0038701605
-
The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons
-
Lev-Maor G, Sorek R, Shomron N, Ast G, (2003) The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons. Science 300: 1288-1291.
-
(2003)
Science
, vol.300
, pp. 1288-1291
-
-
Lev-Maor, G.1
Sorek, R.2
Shomron, N.3
Ast, G.4
-
20
-
-
34748869000
-
Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome
-
Sela N, Mersch B, Gal-Mark N, Lev-Maor G, Hotz-Wagenblatt A, et al. (2007) Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome. Genome Biol 8: R127.
-
(2007)
Genome Biol
, vol.8
-
-
Sela, N.1
Mersch, B.2
Gal-Mark, N.3
Lev-Maor, G.4
Hotz-Wagenblatt, A.5
-
21
-
-
0036064148
-
Alu-containing exons are alternatively spliced
-
Sorek R, Ast G, Graur D, (2002) Alu-containing exons are alternatively spliced. Genome Res 12: 1060-1067.
-
(2002)
Genome Res
, vol.12
, pp. 1060-1067
-
-
Sorek, R.1
Ast, G.2
Graur, D.3
-
22
-
-
79952615527
-
Widespread establishment and regulatory impact of Alu exons in human genes
-
Shen S, Lin L, Cai JJ, Jiang P, Kenkel EJ, et al. (2011) Widespread establishment and regulatory impact of Alu exons in human genes. Proc Natl Acad Sci U S A 108: 2837-2842.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 2837-2842
-
-
Shen, S.1
Lin, L.2
Cai, J.J.3
Jiang, P.4
Kenkel, E.J.5
-
23
-
-
55249106663
-
Diverse splicing patterns of exonized Alu elements in human tissues
-
doi:10.1371/journal.pgen.1000225
-
Lin L, Shen S, Tye A, Cai JJ, Jiang P, et al. (2008) Diverse splicing patterns of exonized Alu elements in human tissues. PLoS Genet 4: e1000225 doi:10.1371/journal.pgen.1000225.
-
(2008)
PLoS Genet
, vol.4
-
-
Lin, L.1
Shen, S.2
Tye, A.3
Cai, J.J.4
Jiang, P.5
-
24
-
-
67349173665
-
The regulated retrotransposon transcriptome of mammalian cells
-
Faulkner GJ, Kimura Y, Daub CO, Wani S, Plessy C, et al. (2009) The regulated retrotransposon transcriptome of mammalian cells. Nat Genet 41: 563-571.
-
(2009)
Nat Genet
, vol.41
, pp. 563-571
-
-
Faulkner, G.J.1
Kimura, Y.2
Daub, C.O.3
Wani, S.4
Plessy, C.5
-
25
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, et al. (2012) Landscape of transcription in human cells. Nature 489: 101-108.
-
(2012)
Nature
, vol.489
, pp. 101-108
-
-
Djebali, S.1
Davis, C.A.2
Merkel, A.3
Dobin, A.4
Lassmann, T.5
-
26
-
-
84861903786
-
A quantitative atlas of polyadenylation in five mammals
-
Derti A, Garrett-Engele P, Macisaac KD, Stevens RC, Sriram S, et al. (2012) A quantitative atlas of polyadenylation in five mammals. Genome Res 22: 1173-1183.
-
(2012)
Genome Res
, vol.22
, pp. 1173-1183
-
-
Derti, A.1
Garrett-Engele, P.2
Macisaac, K.D.3
Stevens, R.C.4
Sriram, S.5
-
27
-
-
55249096744
-
Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3′-end of genes
-
Lee JY, Ji Z, Tian B, (2008) Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3′-end of genes. Nucleic Acids Res 36: 5581-5590.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 5581-5590
-
-
Lee, J.Y.1
Ji, Z.2
Tian, B.3
-
28
-
-
0034705021
-
Secreted and membrane attractin result from alternative splicing of the human ATRN gene
-
Tang W, Gunn TM, McLaughlin DF, Barsh GS, Schlossman SF, et al. (2000) Secreted and membrane attractin result from alternative splicing of the human ATRN gene. Proc Natl Acad Sci U S A 97: 6025-6030.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 6025-6030
-
-
Tang, W.1
Gunn, T.M.2
McLaughlin, D.F.3
Barsh, G.S.4
Schlossman, S.F.5
-
29
-
-
0032530558
-
Attractin (DPPT-L), a member of the CUB family of cell adhesion and guidance proteins, is secreted by activated human T lymphocytes and modulates immune cell interactions
-
Duke-Cohan JS, Gu J, McLaughlin DF, Xu Y, Freeman GJ, et al. (1998) Attractin (DPPT-L), a member of the CUB family of cell adhesion and guidance proteins, is secreted by activated human T lymphocytes and modulates immune cell interactions. Proc Natl Acad Sci U S A 95: 11336-11341.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 11336-11341
-
-
Duke-Cohan, J.S.1
Gu, J.2
McLaughlin, D.F.3
Xu, Y.4
Freeman, G.J.5
-
30
-
-
0033545572
-
The mahogany protein is a receptor involved in suppression of obesity
-
Nagle DL, McGrail SH, Vitale J, Woolf EA, Dussault BJ Jr, et al. (1999) The mahogany protein is a receptor involved in suppression of obesity. Nature 398: 148-152.
-
(1999)
Nature
, vol.398
, pp. 148-152
-
-
Nagle, D.L.1
McGrail, S.H.2
Vitale, J.3
Woolf, E.A.4
Dussault Jr., B.J.5
-
31
-
-
0033545681
-
The mouse mahogany locus encodes a transmembrane form of human attractin
-
Gunn TM, Miller KA, He L, Hyman RW, Davis RW, et al. (1999) The mouse mahogany locus encodes a transmembrane form of human attractin. Nature 398: 152-156.
-
(1999)
Nature
, vol.398
, pp. 152-156
-
-
Gunn, T.M.1
Miller, K.A.2
He, L.3
Hyman, R.W.4
Davis, R.W.5
-
32
-
-
0034079713
-
Human LINE retrotransposons generate processed pseudogenes
-
Esnault C, Maestre J, Heidmann T, (2000) Human LINE retrotransposons generate processed pseudogenes. Nat Genet 24: 363-367.
-
(2000)
Nat Genet
, vol.24
, pp. 363-367
-
-
Esnault, C.1
Maestre, J.2
Heidmann, T.3
-
34
-
-
43249087733
-
Regulation of alternative polyadenylation by genomic imprinting
-
Wood AJ, Schulz R, Woodfine K, Koltowska K, Beechey CV, et al. (2008) Regulation of alternative polyadenylation by genomic imprinting. Genes Dev 22: 1141-1146.
-
(2008)
Genes Dev
, vol.22
, pp. 1141-1146
-
-
Wood, A.J.1
Schulz, R.2
Woodfine, K.3
Koltowska, K.4
Beechey, C.V.5
-
35
-
-
84867539515
-
Epigenetic control of alternative mRNA processing at the imprinted Herc3/Nap1l5 locus
-
Cowley M, Wood AJ, Bohm S, Schulz R, Oakey RJ, (2012) Epigenetic control of alternative mRNA processing at the imprinted Herc3/Nap1l5 locus. Nucleic Acids Res 40: 8917-8926.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 8917-8926
-
-
Cowley, M.1
Wood, A.J.2
Bohm, S.3
Schulz, R.4
Oakey, R.J.5
-
37
-
-
84858439844
-
Mouse endogenous retroviruses can trigger premature transcriptional termination at a distance
-
Li J, Akagi K, Hu Y, Trivett AL, Hlynialuk CJ, et al. (2012) Mouse endogenous retroviruses can trigger premature transcriptional termination at a distance. Genome Res 22: 870-884.
-
(2012)
Genome Res
, vol.22
, pp. 870-884
-
-
Li, J.1
Akagi, K.2
Hu, Y.3
Trivett, A.L.4
Hlynialuk, C.J.5
-
38
-
-
7444264729
-
Complex patterns of transcription at the insertion site of a retrotransposon in the mouse
-
Druker R, Bruxner TJ, Lehrbach NJ, Whitelaw E, (2004) Complex patterns of transcription at the insertion site of a retrotransposon in the mouse. Nucleic Acids Res 32: 5800-5808.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5800-5808
-
-
Druker, R.1
Bruxner, T.J.2
Lehrbach, N.J.3
Whitelaw, E.4
-
39
-
-
0032751471
-
Epigenetic inheritance at the agouti locus in the mouse
-
Morgan HD, Sutherland HG, Martin DI, Whitelaw E, (1999) Epigenetic inheritance at the agouti locus in the mouse. Nat Genet 23: 314-318.
-
(1999)
Nat Genet
, vol.23
, pp. 314-318
-
-
Morgan, H.D.1
Sutherland, H.G.2
Martin, D.I.3
Whitelaw, E.4
-
40
-
-
5044251591
-
Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos
-
Peaston AE, Evsikov AV, Graber JH, de Vries WN, Holbrook AE, et al. (2004) Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos. Dev Cell 7: 597-606.
-
(2004)
Dev Cell
, vol.7
, pp. 597-606
-
-
Peaston, A.E.1
Evsikov, A.V.2
Graber, J.H.3
de Vries, W.N.4
Holbrook, A.E.5
-
41
-
-
77952414230
-
Hypomethylation of a LINE-1 promoter activates an alternate transcript of the MET oncogene in bladders with cancer
-
doi:10.1371/journal.pgen.1000917
-
Wolff EM, Byun HM, Han HF, Sharma S, Nichols PW, et al. (2010) Hypomethylation of a LINE-1 promoter activates an alternate transcript of the MET oncogene in bladders with cancer. PLoS Genet 6: e1000917 doi:10.1371/journal.pgen.1000917.
-
(2010)
PLoS Genet
, vol.6
-
-
Wolff, E.M.1
Byun, H.M.2
Han, H.F.3
Sharma, S.4
Nichols, P.W.5
-
42
-
-
20544466648
-
Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition
-
Muotri AR, Chu VT, Marchetto MC, Deng W, Moran JV, et al. (2005) Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition. Nature 435: 903-910.
-
(2005)
Nature
, vol.435
, pp. 903-910
-
-
Muotri, A.R.1
Chu, V.T.2
Marchetto, M.C.3
Deng, W.4
Moran, J.V.5
-
44
-
-
69349096044
-
L1 retrotransposition in human neural progenitor cells
-
Coufal NG, Garcia-Perez JL, Peng GE, Yeo GW, Mu Y, et al. (2009) L1 retrotransposition in human neural progenitor cells. Nature 460: 1127-1131.
-
(2009)
Nature
, vol.460
, pp. 1127-1131
-
-
Coufal, N.G.1
Garcia-Perez, J.L.2
Peng, G.E.3
Yeo, G.W.4
Mu, Y.5
-
45
-
-
84868032982
-
Single-neuron sequencing analysis of l1 retrotransposition and somatic mutation in the human brain
-
Evrony GD, Cai X, Lee E, Hills LB, Elhosary PC, et al. (2012) Single-neuron sequencing analysis of l1 retrotransposition and somatic mutation in the human brain. Cell 151: 483-496.
-
(2012)
Cell
, vol.151
, pp. 483-496
-
-
Evrony, G.D.1
Cai, X.2
Lee, E.3
Hills, L.B.4
Elhosary, P.C.5
-
46
-
-
4544223707
-
Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L
-
Bourc'his D, Bestor TH, (2004) Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L. Nature 431: 96-99.
-
(2004)
Nature
, vol.431
, pp. 96-99
-
-
Bourc'his, D.1
Bestor, T.H.2
-
47
-
-
34250660148
-
Retrotransposon silencing by DNA methylation can drive mammalian genomic imprinting
-
doi:10.1371/journal.pgen.0030055
-
Suzuki S, Ono R, Narita T, Pask AJ, Shaw G, et al. (2007) Retrotransposon silencing by DNA methylation can drive mammalian genomic imprinting. PLoS Genet 3: e55 doi:10.1371/journal.pgen.0030055.
-
(2007)
PLoS Genet
, vol.3
-
-
Suzuki, S.1
Ono, R.2
Narita, T.3
Pask, A.J.4
Shaw, G.5
-
48
-
-
0027280881
-
Methylation and imprinting: from host defense to gene regulation?
-
Barlow DP, (1993) Methylation and imprinting: from host defense to gene regulation? Science 260: 309-310.
-
(1993)
Science
, vol.260
, pp. 309-310
-
-
Barlow, D.P.1
-
49
-
-
84864596990
-
Retroviruses and the placenta
-
Haig D, (2012) Retroviruses and the placenta. Curr Biol 22: R609-613.
-
(2012)
Curr Biol
, vol.22
-
-
Haig, D.1
-
50
-
-
78049387387
-
Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo
-
Rouget C, Papin C, Boureux A, Meunier AC, Franco B, et al. (2010) Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo. Nature 467: 1128-1132.
-
(2010)
Nature
, vol.467
, pp. 1128-1132
-
-
Rouget, C.1
Papin, C.2
Boureux, A.3
Meunier, A.C.4
Franco, B.5
-
51
-
-
79956052873
-
Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus
-
Watanabe T, Tomizawa S, Mitsuya K, Totoki Y, Yamamoto Y, et al. (2011) Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus. Science 332: 848-852.
-
(2011)
Science
, vol.332
, pp. 848-852
-
-
Watanabe, T.1
Tomizawa, S.2
Mitsuya, K.3
Totoki, Y.4
Yamamoto, Y.5
-
52
-
-
72849114125
-
Imprint switch mutations at Rasgrf1 support conflict hypothesis of imprinting and define a growth control mechanism upstream of IGF1
-
Drake NM, Park YJ, Shirali AS, Cleland TA, Soloway PD, (2009) Imprint switch mutations at Rasgrf1 support conflict hypothesis of imprinting and define a growth control mechanism upstream of IGF1. Mamm Genome 20: 654-663.
-
(2009)
Mamm Genome
, vol.20
, pp. 654-663
-
-
Drake, N.M.1
Park, Y.J.2
Shirali, A.S.3
Cleland, T.A.4
Soloway, P.D.5
-
53
-
-
79952042541
-
Small RNAs from MITE-derived stem-loop precursors regulate abscisic acid signaling and abiotic stress responses in rice
-
Yan Y, Zhang Y, Yang K, Sun Z, Fu Y, et al. (2011) Small RNAs from MITE-derived stem-loop precursors regulate abscisic acid signaling and abiotic stress responses in rice. Plant J 65: 820-828.
-
(2011)
Plant J
, vol.65
, pp. 820-828
-
-
Yan, Y.1
Zhang, Y.2
Yang, K.3
Sun, Z.4
Fu, Y.5
-
54
-
-
22844450779
-
Birth of a metabolic gene cluster in yeast by adaptive gene relocation
-
Wong S, Wolfe KH, (2005) Birth of a metabolic gene cluster in yeast by adaptive gene relocation. Nat Genet 37: 777-782.
-
(2005)
Nat Genet
, vol.37
, pp. 777-782
-
-
Wong, S.1
Wolfe, K.H.2
-
55
-
-
0038104857
-
Genomic gene clustering analysis of pathways in eukaryotes
-
Lee JM, Sonnhammer EL, (2003) Genomic gene clustering analysis of pathways in eukaryotes. Genome Res 13: 875-882.
-
(2003)
Genome Res
, vol.13
, pp. 875-882
-
-
Lee, J.M.1
Sonnhammer, E.L.2
-
56
-
-
0033780450
-
A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression
-
Cohen BA, Mitra RD, Hughes JD, Church GM, (2000) A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression. Nat Genet 26: 183-186.
-
(2000)
Nat Genet
, vol.26
, pp. 183-186
-
-
Cohen, B.A.1
Mitra, R.D.2
Hughes, J.D.3
Church, G.M.4
-
57
-
-
77954100084
-
Transposable elements have rewired the core regulatory network of human embryonic stem cells
-
Kunarso G, Chia NY, Jeyakani J, Hwang C, Lu X, et al. (2010) Transposable elements have rewired the core regulatory network of human embryonic stem cells. Nat Genet 42: 631-634.
-
(2010)
Nat Genet
, vol.42
, pp. 631-634
-
-
Kunarso, G.1
Chia, N.Y.2
Jeyakani, J.3
Hwang, C.4
Lu, X.5
-
58
-
-
0037301560
-
Origin of a substantial fraction of human regulatory sequences from transposable elements
-
Jordan IK, Rogozin IB, Glazko GV, Koonin EV, (2003) Origin of a substantial fraction of human regulatory sequences from transposable elements. Trends Genet 19: 68-72.
-
(2003)
Trends Genet
, vol.19
, pp. 68-72
-
-
Jordan, I.K.1
Rogozin, I.B.2
Glazko, G.V.3
Koonin, E.V.4
-
59
-
-
44449084835
-
Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA
-
Polavarapu N, Marino-Ramirez L, Landsman D, McDonald JF, Jordan IK, (2008) Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA. BMC Genomics 9: 226.
-
(2008)
BMC Genomics
, vol.9
, pp. 226
-
-
Polavarapu, N.1
Marino-Ramirez, L.2
Landsman, D.3
McDonald, J.F.4
Jordan, I.K.5
-
60
-
-
84863458292
-
Embryonic stem cell potency fluctuates with endogenous retrovirus activity
-
Macfarlan TS, Gifford WD, Driscoll S, Lettieri K, Rowe HM, et al. (2012) Embryonic stem cell potency fluctuates with endogenous retrovirus activity. Nature 487: 57-63.
-
(2012)
Nature
, vol.487
, pp. 57-63
-
-
Macfarlan, T.S.1
Gifford, W.D.2
Driscoll, S.3
Lettieri, K.4
Rowe, H.M.5
-
61
-
-
79952614013
-
Endogenous retroviruses and neighboring genes are coordinately repressed by LSD1/KDM1A
-
Macfarlan TS, Gifford WD, Agarwal S, Driscoll S, Lettieri K, et al. (2011) Endogenous retroviruses and neighboring genes are coordinately repressed by LSD1/KDM1A. Genes Dev 25: 594-607.
-
(2011)
Genes Dev
, vol.25
, pp. 594-607
-
-
Macfarlan, T.S.1
Gifford, W.D.2
Agarwal, S.3
Driscoll, S.4
Lettieri, K.5
-
62
-
-
74549116659
-
KAP1 controls endogenous retroviruses in embryonic stem cells
-
Rowe HM, Jakobsson J, Mesnard D, Rougemont J, Reynard S, et al. (2010) KAP1 controls endogenous retroviruses in embryonic stem cells. Nature 463: 237-240.
-
(2010)
Nature
, vol.463
, pp. 237-240
-
-
Rowe, H.M.1
Jakobsson, J.2
Mesnard, D.3
Rougemont, J.4
Reynard, S.5
-
63
-
-
0037089626
-
SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins
-
Schultz DC, Ayyanathan K, Negorev D, Maul GG, Rauscher FJ 3rd, (2002) SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins. Genes Dev 16: 919-932.
-
(2002)
Genes Dev
, vol.16
, pp. 919-932
-
-
Schultz, D.C.1
Ayyanathan, K.2
Negorev, D.3
Maul, G.G.4
Rauscher 3rd, F.J.5
-
64
-
-
35848947442
-
Decidualization of the human endometrium: mechanisms, functions, and clinical perspectives
-
Gellersen B, Brosens IA, Brosens JJ, (2007) Decidualization of the human endometrium: mechanisms, functions, and clinical perspectives. Semin Reprod Med 25: 445-453.
-
(2007)
Semin Reprod Med
, vol.25
, pp. 445-453
-
-
Gellersen, B.1
Brosens, I.A.2
Brosens, J.J.3
-
65
-
-
80055010534
-
Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals
-
Lynch VJ, Leclerc RD, May G, Wagner GP, (2011) Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals. Nat Genet 43: 1154-1159.
-
(2011)
Nat Genet
, vol.43
, pp. 1154-1159
-
-
Lynch, V.J.1
Leclerc, R.D.2
May, G.3
Wagner, G.P.4
-
66
-
-
33749987788
-
Prolactin in man: a tale of two promoters
-
Gerlo S, Davis JR, Mager DL, Kooijman R, (2006) Prolactin in man: a tale of two promoters. Bioessays 28: 1051-1055.
-
(2006)
Bioessays
, vol.28
, pp. 1051-1055
-
-
Gerlo, S.1
Davis, J.R.2
Mager, D.L.3
Kooijman, R.4
-
67
-
-
84861320913
-
Convergent evolution of endometrial prolactin expression in primates, mice, and elephants through the independent recruitment of transposable elements
-
Emera D, Casola C, Lynch VJ, Wildman DE, Agnew D, et al. (2012) Convergent evolution of endometrial prolactin expression in primates, mice, and elephants through the independent recruitment of transposable elements. Mol Biol Evol 29: 239-247.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 239-247
-
-
Emera, D.1
Casola, C.2
Lynch, V.J.3
Wildman, D.E.4
Agnew, D.5
-
68
-
-
81755187043
-
A pair of co-opted retroviral envelope syncytin genes is required for formation of the two-layered murine placental syncytiotrophoblast
-
Dupressoir A, Vernochet C, Harper F, Guegan J, Dessen P, et al. (2011) A pair of co-opted retroviral envelope syncytin genes is required for formation of the two-layered murine placental syncytiotrophoblast. Proc Natl Acad Sci U S A 108: E1164-1173.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
-
-
Dupressoir, A.1
Vernochet, C.2
Harper, F.3
Guegan, J.4
Dessen, P.5
-
69
-
-
84863619688
-
Extrathymic generation of regulatory T cells in placental mammals mitigates maternal-fetal conflict
-
Samstein RM, Josefowicz SZ, Arvey A, Treuting PM, Rudensky AY, (2012) Extrathymic generation of regulatory T cells in placental mammals mitigates maternal-fetal conflict. Cell 150: 29-38.
-
(2012)
Cell
, vol.150
, pp. 29-38
-
-
Samstein, R.M.1
Josefowicz, S.Z.2
Arvey, A.3
Treuting, P.M.4
Rudensky, A.Y.5
-
70
-
-
70350515004
-
Unexpected consequences of a sudden and massive transposon amplification on rice gene expression
-
Naito K, Zhang F, Tsukiyama T, Saito H, Hancock CN, et al. (2009) Unexpected consequences of a sudden and massive transposon amplification on rice gene expression. Nature 461: 1130-1134.
-
(2009)
Nature
, vol.461
, pp. 1130-1134
-
-
Naito, K.1
Zhang, F.2
Tsukiyama, T.3
Saito, H.4
Hancock, C.N.5
-
71
-
-
84865285978
-
Landscape of somatic retrotransposition in human cancers
-
Lee E, Iskow R, Yang L, Gokcumen O, Haseley P, et al. (2012) Landscape of somatic retrotransposition in human cancers. Science 337: 967-971.
-
(2012)
Science
, vol.337
, pp. 967-971
-
-
Lee, E.1
Iskow, R.2
Yang, L.3
Gokcumen, O.4
Haseley, P.5
-
72
-
-
79953710031
-
T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data
-
Fiston-Lavier AS, Carrigan M, Petrov DA, Gonzalez J, (2011) T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data. Nucleic Acids Res 39: e36.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Fiston-Lavier, A.S.1
Carrigan, M.2
Petrov, D.A.3
Gonzalez, J.4
-
73
-
-
80052318161
-
A comprehensive map of mobile element insertion polymorphisms in humans
-
doi:10.1371/journal.pgen.1002236
-
Stewart C, Kural D, Stromberg MP, Walker JA, Konkel MK, et al. (2011) A comprehensive map of mobile element insertion polymorphisms in humans. PLoS Genet 7: e1002236 doi:10.1371/journal.pgen.1002236.
-
(2011)
PLoS Genet
, vol.7
-
-
Stewart, C.1
Kural, D.2
Stromberg, M.P.3
Walker, J.A.4
Konkel, M.K.5
-
74
-
-
77249148019
-
Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency
-
Popp C, Dean W, Feng S, Cokus SJ, Andrews S, et al. (2010) Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency. Nature 463: 1101-1105.
-
(2010)
Nature
, vol.463
, pp. 1101-1105
-
-
Popp, C.1
Dean, W.2
Feng, S.3
Cokus, S.J.4
Andrews, S.5
-
75
-
-
0037298161
-
Resistance of IAPs to methylation reprogramming may provide a mechanism for epigenetic inheritance in the mouse
-
Lane N, Dean W, Erhardt S, Hajkova P, Surani A, et al. (2003) Resistance of IAPs to methylation reprogramming may provide a mechanism for epigenetic inheritance in the mouse. Genesis 35: 88-93.
-
(2003)
Genesis
, vol.35
, pp. 88-93
-
-
Lane, N.1
Dean, W.2
Erhardt, S.3
Hajkova, P.4
Surani, A.5
-
76
-
-
0037418193
-
Transgenerational inheritance of epigenetic states at the murine Axin(Fu) allele occurs after maternal and paternal transmission
-
Rakyan VK, Chong S, Champ ME, Cuthbert PC, Morgan HD, et al. (2003) Transgenerational inheritance of epigenetic states at the murine Axin(Fu) allele occurs after maternal and paternal transmission. Proc Natl Acad Sci U S A 100: 2538-2543.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 2538-2543
-
-
Rakyan, V.K.1
Chong, S.2
Champ, M.E.3
Cuthbert, P.C.4
Morgan, H.D.5
-
77
-
-
84861188188
-
Studies of endogenous retroviruses reveal a continuing evolutionary saga
-
Stoye JP, (2012) Studies of endogenous retroviruses reveal a continuing evolutionary saga. Nature reviews Microbiology 10: 395-406.
-
(2012)
Nature Reviews Microbiology
, vol.10
, pp. 395-406
-
-
Stoye, J.P.1
-
78
-
-
0020770528
-
Excision of the DBA ecotropic provirus in dilute coat-color revertants of mice occurs by homologous recombination involving the viral LTRs
-
Copeland NG, Hutchison KW, Jenkins NA, (1983) Excision of the DBA ecotropic provirus in dilute coat-color revertants of mice occurs by homologous recombination involving the viral LTRs. Cell 33: 379-387.
-
(1983)
Cell
, vol.33
, pp. 379-387
-
-
Copeland, N.G.1
Hutchison, K.W.2
Jenkins, N.A.3
-
79
-
-
33646247399
-
Estimating the retrotransposition rate of human Alu elements
-
Cordaux R, Hedges DJ, Herke SW, Batzer MA, (2006) Estimating the retrotransposition rate of human Alu elements. Gene 373: 134-137.
-
(2006)
Gene
, vol.373
, pp. 134-137
-
-
Cordaux, R.1
Hedges, D.J.2
Herke, S.W.3
Batzer, M.A.4
-
80
-
-
67649982842
-
Mobile elements create structural variation: analysis of a complete human genome
-
Xing J, Zhang Y, Han K, Salem AH, Sen SK, et al. (2009) Mobile elements create structural variation: analysis of a complete human genome. Genome Res 19: 1516-1526.
-
(2009)
Genome Res
, vol.19
, pp. 1516-1526
-
-
Xing, J.1
Zhang, Y.2
Han, K.3
Salem, A.H.4
Sen, S.K.5
-
81
-
-
34250813062
-
Insertional polymorphisms: a new lease of life for endogenous retroviruses in human disease
-
Moyes D, Griffiths DJ, Venables PJ, (2007) Insertional polymorphisms: a new lease of life for endogenous retroviruses in human disease. Trends Genet 23: 326-333.
-
(2007)
Trends Genet
, vol.23
, pp. 326-333
-
-
Moyes, D.1
Griffiths, D.J.2
Venables, P.J.3
-
82
-
-
84860879005
-
Human transposon tectonics
-
Burns KH, Boeke JD, (2012) Human transposon tectonics. Cell 149: 740-752.
-
(2012)
Cell
, vol.149
, pp. 740-752
-
-
Burns, K.H.1
Boeke, J.D.2
-
83
-
-
84861918301
-
Retrotransposons
-
Finnegan DJ, (2012) Retrotransposons. Curr Biol 22: R432-437.
-
(2012)
Curr Biol
, vol.22
-
-
Finnegan, D.J.1
|