-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0037372658
-
Human population genetic structure and inference of group membership
-
Bamshad MJ, Wooding S, Watkins WS, Ostler CT, Batzer MA, Jorde LB (2003) Human population genetic structure and inference of group membership. Am J Hum Genet 72:578-589
-
(2003)
Am J Hum Genet
, vol.72
, pp. 578-589
-
-
Bamshad, M.J.1
Wooding, S.2
Watkins, W.S.3
Ostler, C.T.4
Batzer, M.A.5
Jorde, L.B.6
-
3
-
-
0036250811
-
Alu repeats and human genomic diversity
-
Batzer MA, Deininger PL (2002) Alu repeats and human genomic diversity. Nat Rev Genet 3:370-379
-
(2002)
Nat Rev Genet
, vol.3
, pp. 370-379
-
-
Batzer, M.A.1
Deininger, P.L.2
-
4
-
-
0031135862
-
LINEs and Alus - The polyA connection
-
Boeke JD (1997) LINEs and Alus - the polyA connection. Nat Genet 16:6-7
-
(1997)
Nat Genet
, vol.16
, pp. 6-7
-
-
Boeke, J.D.1
-
5
-
-
0034086210
-
L1 (LINE-1) retrotransposon evolution and amplification in recent human history
-
Boissinot S, Chevret P, Furano AV (2000) L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol 17:915-928
-
(2000)
Mol Biol Evol
, vol.17
, pp. 915-928
-
-
Boissinot, S.1
Chevret, P.2
Furano, A.V.3
-
6
-
-
0037965788
-
Hot L1s account for the bulk of retrotransposition in the human population
-
Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HH Jr (2003) Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci USA 100:5280-5285
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 5280-5285
-
-
Brouha, B.1
Schustak, J.2
Badge, R.M.3
Lutz-Prigge, S.4
Farley, A.H.5
Moran, J.V.6
Kazazian Jr., H.H.7
-
7
-
-
0034535132
-
Age and origin of the FCMD 3′-untranslated-region retrotransposal insertion mutation causing Fukuyama-type congenital muscular dystrophy in the Japanese population
-
Colombo R, Bignamini AA, Carobene A, Sasaki J, Tachikawa M, Kobayashi K, Toda T (2000) Age and origin of the FCMD 3′-untranslated-region retrotransposal insertion mutation causing Fukuyama-type congenital muscular dystrophy in the Japanese population. Hum Genet 107:559-567
-
(2000)
Hum Genet
, vol.107
, pp. 559-567
-
-
Colombo, R.1
Bignamini, A.A.2
Carobene, A.3
Sasaki, J.4
Tachikawa, M.5
Kobayashi, K.6
Toda, T.7
-
9
-
-
0041353551
-
LINE-mediated retrotransposition of marked Alu sequences
-
Dewannieux M, Esnault C, Heidmann T (2003) LINE-mediated retrotransposition of marked Alu sequences. Nat Genet 35:41-48
-
(2003)
Nat Genet
, vol.35
, pp. 41-48
-
-
Dewannieux, M.1
Esnault, C.2
Heidmann, T.3
-
10
-
-
0009969062
-
Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
-
Feng Q, Moran JV, Kazazian HH Jr, Boeke JD (1996) Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell 87:905-916
-
(1996)
Cell
, vol.87
, pp. 905-916
-
-
Feng, Q.1
Moran, J.V.2
Kazazian Jr., H.H.3
Boeke, J.D.4
-
11
-
-
0034161961
-
Transduction of 3′-flanking sequences is common in L1 retrotransposition
-
Goodier JL, Ostertag EM, Kazazian HH Jr (2000) Transduction of 3′-flanking sequences is common in L1 retrotransposition. Hum Mol Genet 9:653-657
-
(2000)
Hum Mol Genet
, vol.9
, pp. 653-657
-
-
Goodier, J.L.1
Ostertag, E.M.2
Kazazian Jr., H.H.3
-
12
-
-
0028092713
-
A novel mobile element inserted in the alpha spectrin gene: Spectrin dayton. A truncated α spectrin associated with hereditary elliptocytosis
-
Hassoun H, Coetzer TL, Vassiliadis JN, Sahr KE, Maalouf GJ, Saad ST, Catanzariti L, Palek J (1994) A novel mobile element inserted in the alpha spectrin gene: spectrin dayton. A truncated α spectrin associated with hereditary elliptocytosis. J Clin Invest 94:643-648
-
(1994)
J Clin Invest
, vol.94
, pp. 643-648
-
-
Hassoun, H.1
Coetzer, T.L.2
Vassiliadis, J.N.3
Sahr, K.E.4
Maalouf, G.J.5
Saad, S.T.6
Catanzariti, L.7
Palek, J.8
-
13
-
-
0031055331
-
Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons
-
Jurka J (1997) Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons. Proc Natl Acad Sci USA 94:1872-1877
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 1872-1877
-
-
Jurka, J.1
-
14
-
-
0023867459
-
Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man
-
Kazazian HH Jr, Wong C, Youssoufian H, Scott AF, Phillips DG, Antonarakis SE (1988) Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man. Nature 332:164-166
-
(1988)
Nature
, vol.332
, pp. 164-166
-
-
Kazazian Jr., H.H.1
Wong, C.2
Youssoufian, H.3
Scott, A.F.4
Phillips, D.G.5
Antonarakis, S.E.6
-
15
-
-
0033541602
-
Cloning and nucleotide sequence of retroposons specific to hominoid primates derived from an endogenous retrovirus (HERV-K)
-
Kim HS, Takenaka O, Crow TJ (1999) Cloning and nucleotide sequence of retroposons specific to hominoid primates derived from an endogenous retrovirus (HERV-K). AIDS Res Hum Retroviruses 15:595-601
-
(1999)
AIDS Res Hum Retroviruses
, vol.15
, pp. 595-601
-
-
Kim, H.S.1
Takenaka, O.2
Crow, T.J.3
-
16
-
-
0032560851
-
An ancient retrotransposal insertion causes Fukuyama-type congenital muscular dystrophy
-
Kobayashi K, Nakahori Y, Miyake M, Matsumura K, Kondo-Iida E, Nomura Y, Segawa M, Yoshioka M, Saito K, Osawa M, Hamano K, Sakakihara Y, Nonaka I, Nakagome Y, Kanazawa I, Nakamura Y, Tokunaga K, Toda T (1998) An ancient retrotransposal insertion causes Fukuyama-type congenital muscular dystrophy. Nature 394:388-392
-
(1998)
Nature
, vol.394
, pp. 388-392
-
-
Kobayashi, K.1
Nakahori, Y.2
Miyake, M.3
Matsumura, K.4
Kondo-Iida, E.5
Nomura, Y.6
Segawa, M.7
Yoshioka, M.8
Saito, K.9
Osawa, M.10
Hamano, K.11
Sakakihara, Y.12
Nonaka, I.13
Nakagome, Y.14
Kanazawa, I.15
Nakamura, Y.16
Tokunaga, K.17
Toda, T.18
-
17
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, et al (2001) Initial sequencing and analysis of the human genome. Nature 409:860-921
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
-
18
-
-
0023256559
-
Slipped-strand mispairing: A major mechanism for DNA sequence evolution
-
Levinson G, Gutman GA (1987) Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 4:203-221
-
(1987)
Mol Biol Evol
, vol.4
, pp. 203-221
-
-
Levinson, G.1
Gutman, G.A.2
-
19
-
-
0027450385
-
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
-
Luan DD, Korman MH, Jakubczak JL, Eickbush TH (1993) Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72:595-605
-
(1993)
Cell
, vol.72
, pp. 595-605
-
-
Luan, D.D.1
Korman, M.H.2
Jakubczak, J.L.3
Eickbush, T.H.4
-
21
-
-
0036073862
-
A comprehensive analysis of recently integrated human Ta L1 elements
-
Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD, Henke J, Henke L, Moran JV, Jorde LB, Batzer MA (2002) A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet 71:312-326
-
(2002)
Am J Hum Genet
, vol.71
, pp. 312-326
-
-
Myers, J.S.1
Vincent, B.J.2
Udall, H.3
Watkins, W.S.4
Morrish, T.A.5
Kilroy, G.E.6
Swergold, G.D.7
Henke, J.8
Henke, L.9
Moran, J.V.10
Jorde, L.B.11
Batzer, M.A.12
-
22
-
-
85030915302
-
LINEs mobilize SINEs in the eel through a shared 3′ sequence
-
Nikaido M, Harada M, Matsumura S, Lin LK, Wu Y, Hasegawa M, Okada N, Kajikawa M (2002) LINEs mobilize SINEs in the eel through a shared 3′ sequence. J Mol Evol 55:284-301
-
(2002)
J Mol Evol
, vol.55
, pp. 284-301
-
-
Nikaido, M.1
Harada, M.2
Matsumura, S.3
Lin, L.K.4
Wu, Y.5
Hasegawa, M.6
Okada, N.7
Kajikawa, M.8
-
23
-
-
0023651425
-
A novel human nonviral retroposon derived from an endogenous retrovirus
-
Ono M, Kawakami M, Takezawa T (1987) A novel human nonviral retroposon derived from an endogenous retrovirus. Nucleic Acids Res 15:8725-8737
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 8725-8737
-
-
Ono, M.1
Kawakami, M.2
Takezawa, T.3
-
24
-
-
0023010394
-
Nucleotide sequence of human endogenous retrovirus genome related to the mouse mammary tumor virus genome
-
Ono M, Yasunaga T, Miyata T, Ushikubo H (1986) Nucleotide sequence of human endogenous retrovirus genome related to the mouse mammary tumor virus genome. J Virol 60: 589-598
-
(1986)
J Virol
, vol.60
, pp. 589-598
-
-
Ono, M.1
Yasunaga, T.2
Miyata, T.3
Ushikubo, H.4
-
25
-
-
0036899669
-
A mouse model of human L1 retrotransposition
-
Ostertag EM, DeBerardinis RJ, Goodier JL, Zhang Y, Yang N, Gerton GL, Kazazian HH Jr (2002) A mouse model of human L1 retrotransposition. Nat Genet 32:655-660
-
(2002)
Nat Genet
, vol.32
, pp. 655-660
-
-
Ostertag, E.M.1
DeBerardinis, R.J.2
Goodier, J.L.3
Zhang, Y.4
Yang, N.5
Gerton, G.L.6
Kazazian Jr., H.H.7
-
27
-
-
0035208118
-
Twin priming: A proposed mechanism for the creation of inversions in L1 retrotransposition
-
_ (2001b) Twin priming: a proposed mechanism for the creation of inversions in L1 retrotransposition. Genome Res 11:2059-2065
-
(2001)
Genome Res
, vol.11
, pp. 2059-2065
-
-
-
30
-
-
0032911903
-
Unusual mutations in Btk: An insertion, a duplication, an inversion, and four large deletions
-
Rohrer J, Minegishi Y, Richter D, Eguiguren J, Conley ME (1999) Unusual mutations in Btk: an insertion, a duplication, an inversion, and four large deletions. Clin Immunol 90:28-37
-
(1999)
Clin Immunol
, vol.90
, pp. 28-37
-
-
Rohrer, J.1
Minegishi, Y.2
Richter, D.3
Eguiguren, J.4
Conley, M.E.5
-
32
-
-
0036737222
-
Active Alu element "A-tails": Size does matter
-
Roy-Engel AM, Salem A-H, Oyeniran OO, Deininger L, Hedges DJ, Kilroy GE, Batzer MA, Deininger PL (2002b) Active Alu element "A-tails": size does matter. Genome Res 12:1333-1344
-
(2002)
Genome Res
, vol.12
, pp. 1333-1344
-
-
Roy-Engel, A.M.1
Salem, A.-H.2
Oyeniran, O.O.3
Deininger, L.4
Hedges, D.J.5
Kilroy, G.E.6
Batzer, M.A.7
Deininger, P.L.8
-
33
-
-
0033786249
-
Reading between the LINEs: Human genomic variation induced by LINE-1 retrotransposition
-
Sheen FM, Sherry ST, Risch GM, Robichaux M, Nasidze I, Stoneking M, Batzer MA, Swergold GD (2000) Reading between the LINEs: human genomic variation induced by LINE-1 retrotransposition. Genome Res 10:1496-1508
-
(2000)
Genome Res
, vol.10
, pp. 1496-1508
-
-
Sheen, F.M.1
Sherry, S.T.2
Risch, G.M.3
Robichaux, M.4
Nasidze, I.5
Stoneking, M.6
Batzer, M.A.7
Swergold, G.D.8
-
34
-
-
0028246851
-
Structure and genetics of the partially duplicated gene RP located immediately upstream of the complement C4A and the C4B genes in the HLA class III region: Molecular cloning, exon-intron structure, composite retroposon, and breakpoint of gene duplication
-
Shen L, Wu LC, Sanlioglu S, Chen R, Mendoza AR, Dangel AW, Carroll MC, Zipf WB, Yu CY (1994) Structure and genetics of the partially duplicated gene RP located immediately upstream of the complement C4A and the C4B genes in the HLA class III region: molecular cloning, exon-intron structure, composite retroposon, and breakpoint of gene duplication. J Biol Chem 269:8466-8476
-
(1994)
J Biol Chem
, vol.269
, pp. 8466-8476
-
-
Shen, L.1
Wu, L.C.2
Sanlioglu, S.3
Chen, R.4
Mendoza, A.R.5
Dangel, A.W.6
Carroll, M.C.7
Zipf, W.B.8
Yu, C.Y.9
-
35
-
-
0032784908
-
Interspersed repeats and other mementos of transposable elements in mammalian genomes
-
Smit AF (1999) Interspersed repeats and other mementos of transposable elements in mammalian genomes. Curr Opin Genet Dev 9:657-663
-
(1999)
Curr Opin Genet Dev
, vol.9
, pp. 657-663
-
-
Smit, A.F.1
-
36
-
-
84889394729
-
BLAT - The BLAST-like alignment tool
-
Sugnet CW, Furey TS, Roskin KM, Pringle TH, Zahler AM, Haussler D, Kent WJ (2002) BLAT - the BLAST-like alignment tool. Genome Res 12:996-1006
-
(2002)
Genome Res
, vol.12
, pp. 996-1006
-
-
Sugnet, C.W.1
Furey, T.S.2
Roskin, K.M.3
Pringle, T.H.4
Zahler, A.M.5
Haussler, D.6
Kent, W.J.7
-
37
-
-
0038148221
-
Genetic variation among world populations: Inferences from 100 Alu insertion polymorphisms
-
Watkins WS, Rogers AR, Ostler CT, Wooding S, Bamshad MJ, Brassington A-ME, Carroll ML, Nguyen SV, Walker JA, Prasad BVR, Reddy PG, Das PK, Batzer MA, Jorde LB (2003) Genetic variation among world populations: inferences from 100 Alu insertion polymorphisms. Genome Res 13:1607-1618
-
(2003)
Genome Res
, vol.13
, pp. 1607-1618
-
-
Watkins, W.S.1
Rogers, A.R.2
Ostler, C.T.3
Wooding, S.4
Bamshad, M.J.5
Brassington, A.-M.E.6
Carroll, M.L.7
Nguyen, S.V.8
Walker, J.A.9
Prasad, B.V.R.10
Reddy, P.G.11
Das, P.K.12
Batzer, M.A.13
Jorde, L.B.14
-
38
-
-
0035144498
-
Human L1 retrotransposition: cis-preference vs. trans-complementation
-
Wei W, Gilbert N, Ooi SL, Lawler JF, Ostertag EM, Kazazian HH, Boeke JD, Moran JV (2001) Human L1 retrotransposition: cis-preference vs. trans-complementation. Mol Cell Biol 21:1429-1439
-
(2001)
Mol Cell Biol
, vol.21
, pp. 1429-1439
-
-
Wei, W.1
Gilbert, N.2
Ooi, S.L.3
Lawler, J.F.4
Ostertag, E.M.5
Kazazian, H.H.6
Boeke, J.D.7
Moran, J.V.8
-
39
-
-
0026531873
-
A variable number of tandem repeats locus within the human complement C2 gene is associated with a retroposon derived from a human endogenous retrovirus
-
Zhu ZB, Hsieh SL, Bentley DR, Campbell RD, Volanakis JE (1992) A variable number of tandem repeats locus within the human complement C2 gene is associated with a retroposon derived from a human endogenous retrovirus. J Exp Med 175:1783-1787
-
(1992)
J Exp Med
, vol.175
, pp. 1783-1787
-
-
Zhu, Z.B.1
Hsieh, S.L.2
Bentley, D.R.3
Campbell, R.D.4
Volanakis, J.E.5
-
40
-
-
0028297151
-
Ancestry of SINE-R.C2 a human-specific retroposon
-
Zhu ZB, Jian B, Volanakis JE (1994) Ancestry of SINE-R.C2 a human-specific retroposon. Hum Genet 93:545-551
-
(1994)
Hum Genet
, vol.93
, pp. 545-551
-
-
Zhu, Z.B.1
Jian, B.2
Volanakis, J.E.3
|