-
1
-
-
72749127435
-
The origin and behavior of mutable loci in maize
-
USA
-
McClintock, B. The origin and behavior of mutable loci in maize. Proc. Natl Acad. Sci. USA 36, 344-355 (1950).
-
(1950)
Proc. Natl Acad. Sci.
, vol.36
, pp. 344-355
-
-
McClintock, B.1
-
2
-
-
0027145631
-
Transposons in place of telomeric repeats at a Drosophila telomere
-
DOI 10.1016/0092-8674(93)90318-K
-
Levis, R. W., Ganesan, R., Houtchens, K., Tolar, L. A. & Sheen, F. M. Transposons in place of telomeric repeats at a Drosophila telomere. Cell 75, 1083-1093 (1993). (Pubitemid 24006105)
-
(1993)
Cell
, vol.75
, Issue.6
, pp. 1083-1093
-
-
Levis, R.W.1
Ganesan, R.2
Houtchens, K.3
Tolar, L.A.4
Sheen, F.-M.5
-
3
-
-
0032551829
-
Transposition mediated by RAG-1 and RAG2 and its implications for the evolution of the immune system
-
DOI 10.1038/29457
-
Agrawal, A., Eastman, Q. M. & Schatz, D. G. Transposition mediated by RAG1 and RAG2 and its implications for the evolution of the immune system. Nature 394, 744-751 (1998). (Pubitemid 28391631)
-
(1998)
Nature
, vol.394
, Issue.6695
, pp. 744-751
-
-
Agrawal, A.1
Eastmant, Q.M.2
Schatz, D.G.3
-
4
-
-
42349096534
-
Transposable elements and the evolution of regulatory networks
-
DOI 10.1038/nrg2337, PII NRG2337
-
Feschotte, C. Transposable elements and the evolution of regulatory networks. Nature Rev. Genet. 9, 397-405 (2008). (Pubitemid 351556062)
-
(2008)
Nature Reviews Genetics
, vol.9
, Issue.5
, pp. 397-405
-
-
Feschotte, C.1
-
5
-
-
80052012833
-
LINE-1 elements in structural variation and disease
-
18 Jul 10.1146/annurev-genom- 082509-141802
-
Beck, C. R., Garcia-Perez, J. L., Badge, R. M. & Moran, J. V. LINE-1 elements in structural variation and disease. Annu. Rev. Genomics Hum. Genet. 18 Jul 2011 (doi:10.1146/annurev-genom- 082509-141802).
-
(2011)
Annu. Rev. Genomics Hum. Genet.
-
-
Beck, C.R.1
Garcia-Perez, J.L.2
Badge, R.M.3
Moran, J.V.4
-
6
-
-
0019120342
-
Selfish DNA
-
DOI 10.1038/288645a0
-
Orgel, L. E., Crick, F. H. & Sapienza, C. Selfish DNA. Nature 288, 645-646 (1980). (Pubitemid 11168519)
-
(1980)
Nature
, vol.288
, Issue.5792
, pp. 645-646
-
-
Orgel, L.E.1
Crick, F.H.C.2
Sapienza, C.3
-
7
-
-
0018894384
-
Selfish genes, the phenotype paradigm and genome evolution
-
Doolittle, W. F. & Sapienza, C. Selfish genes, the phenotype paradigm and genome evolution. Nature 284, 601-603 (1980). (Pubitemid 10070865)
-
(1980)
Nature
, vol.284
, Issue.5757
, pp. 601-603
-
-
Doolittle, W.F.1
Sapienza, C.2
-
8
-
-
0033287156
-
Sex brings transposons and genomes into conflict
-
Bestor, T. H. Sex brings transposons and genomes into conflict. Genetica 107, 289-295 (1999). (Pubitemid 129574972)
-
(1999)
Genetica
, vol.107
, Issue.1-3
, pp. 289-295
-
-
Bestor, T.H.1
-
9
-
-
0020447816
-
Selfish DNA: A sexually transmitted nuclear parasite
-
Hickey, D. A. Selfish DNA: a sexually-transmitted nuclear parasite. Genetics 101, 519-531 (1982). (Pubitemid 13241272)
-
(1982)
Genetics
, vol.101
, Issue.3-4
, pp. 519-531
-
-
Hickey, D.A.1
-
10
-
-
52949095077
-
Retrotransposons revisited: The restraint and rehabilitation of parasites
-
Goodier, J. L. & Kazazian, H. H. Jr. Retrotransposons revisited: the restraint and rehabilitation of parasites. Cell 135, 23-35 (2008).
-
(2008)
Cell.
, vol.135
, pp. 23-35
-
-
Goodier, J.L.1
Kazazian, Jr.H.H.2
-
11
-
-
0030606320
-
High frequency retrotransposition in cultured mammalian cells
-
DOI 10.1016/S0092-8674(00)81998-4
-
Moran, J. V. et al. High frequency retrotransposition in cultured mammalian cells. Cell 87, 917-927 (1996). (Pubitemid 26404290)
-
(1996)
Cell
, vol.87
, Issue.5
, pp. 917-927
-
-
Moran, J.V.1
Holmes, S.E.2
Naas, T.P.3
DeBerardinis, R.J.4
Boeke, J.D.5
Kazazian Jr., H.H.6
-
12
-
-
77953889472
-
Natural mutagenesis of human genomes by endogenous retrotransposons
-
Iskow, R. C. et al. Natural mutagenesis of human genomes by endogenous retrotransposons. Cell 141, 1253-1261 (2010).
-
(2010)
Cell.
, vol.141
, pp. 1253-1261
-
-
Iskow, R.C.1
-
13
-
-
77953880842
-
LINE-1 retrotransposition activity in human genomes
-
Beck, C. R. et al. LINE-1 retrotransposition activity in human genomes. Cell 141, 1159-1170 (2010).
-
(2010)
Cell.
, vol.141
, pp. 1159-1170
-
-
Beck, C.R.1
-
14
-
-
77953892366
-
Mobile interspersed repeats are major structural variants in the human genome
-
Huang, C. R. et al. Mobile interspersed repeats are major structural variants in the human genome. Cell 141, 1171-1182 (2010).
-
(2010)
Cell.
, vol.141
, pp. 1171-1182
-
-
Huang, C.R.1
-
15
-
-
77954038084
-
Mobile element scanning ME-scan by targeted high-throughput sequencing
-
Witherspoon, D. J. et al. Mobile element scanning (ME-Scan) by targeted high-throughput sequencing. BMC Genomics 11, 410 (2010).
-
(2010)
BMC Genomics
, vol.11
, pp. 410
-
-
Witherspoon, D.J.1
-
16
-
-
84975806579
-
Alu repeat discovery and characterization within human genomes
-
Hormozdiari, F. et al. Alu repeat discovery and characterization within human genomes. Genome Res. 21, 840-849 (2011).
-
(2011)
Genome Res.
, vol.21
, pp. 840-849
-
-
Hormozdiari, F.1
-
17
-
-
77955160719
-
High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes
-
Ewing, A. D. & Kazazian, H. H. Jr. High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes. Genome Res. 20, 1262-1270 (2010).
-
(2010)
Genome Res.
, vol.20
, pp. 1262-1270
-
-
Ewing, A.D.1
Kazazian, Jr.H.H.2
-
18
-
-
79957933956
-
Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans
-
Ewing, A. D. & Kazazian, H. H. Jr. Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans. Genome Res. 21, 985-990 (2011).
-
(2011)
Genome Res.
, vol.21
, pp. 985-990
-
-
Ewing, A.D.1
Kazazian, Jr.H.H.2
-
19
-
-
34447327537
-
LINE-1 retrotransposition in human embryonic stem cells
-
DOI 10.1093/hmg/ddm105
-
Garcia-Perez, J. L. et al. LINE-1 retrotransposition in human embryonic stem cells. Hum. Mol. Genet. 16, 1569-1577 (2007). (Pubitemid 47050670)
-
(2007)
Human Molecular Genetics
, vol.16
, Issue.13
, pp. 1569-1577
-
-
Garcia-Perez, J.L.1
Marchetto, M.C.N.2
Muotri, A.R.3
Coufal, N.G.4
Gage, F.H.5
O'Shea, K.S.6
Moran, J.V.7
-
20
-
-
34447320759
-
L1 retrotransposition can occur early in human embryonic development
-
van den Hurk, J. A. et al. L1 retrotransposition can occur early in human embryonic development. Hum. Mol. Genet. 16, 1587-1592 (2007).
-
(2007)
Hum. Mol. Genet.
, vol.16
, pp. 1587-1592
-
-
Van Den Hurk, J.A.1
-
21
-
-
66149168927
-
L1 retrotransposition occurs mainly in embryogenesis and creates somatic mosaicism
-
Kano, H. et al. L1 retrotransposition occurs mainly in embryogenesis and creates somatic mosaicism. Genes Dev. 23, 1303-1312 (2009).
-
(2009)
Genes Dev.
, vol.23
, pp. 1303-1312
-
-
Kano, H.1
-
22
-
-
0026503996
-
Disruption of the APC gene by a retrotransposal insertion of L1 sequence in a colon cancer
-
Miki, Y. et al. Disruption of the APC gene by a retrotransposal insertion of L1 sequence in a colon cancer. Cancer Res. 52, 643-645 (1992).
-
(1992)
Cancer Res.
, vol.52
, pp. 643-645
-
-
Miki, Y.1
-
23
-
-
69349096044
-
L1 retrotransposition in human neural progenitor cells
-
Coufal, N. G. et al. L1 retrotransposition in human neural progenitor cells. Nature 460, 1127-1131 (2009).
-
(2009)
Nature
, vol.460
, pp. 1127-1131
-
-
Coufal, N.G.1
-
24
-
-
20544466648
-
Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition
-
DOI 10.1038/nature03663
-
Muotri, A. R. et al. Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition. Nature 435, 903-910 (2005). (Pubitemid 40896309)
-
(2005)
Nature
, vol.435
, Issue.7044
, pp. 903-910
-
-
Muotri, A.R.1
Chu, V.T.2
Marchetto, M.C.N.3
Deng, W.4
Moran, J.V.5
Gage, F.H.6
-
26
-
-
41549134052
-
Retrotransposon Tf1 is targeted to pol II promoters by transcription activators
-
Leem, Y. E. et al. Retrotransposon Tf1 is targeted to pol II promoters by transcription activators. Mol. Cell 30, 98-107 (2008).
-
(2008)
Mol. Cell.
, vol.30
, pp. 98-107
-
-
Leem, Y.E.1
-
27
-
-
0029879536
-
Integration of the yeast retrotransposon Ty1 is targeted to regions upstream of genes transcribed by RNA polymerase III
-
Devine, S. E. & Boeke, J. D. Integration of the yeast retrotransposon Ty1 is targeted to regions upstream of genes transcribed by RNA polymerase III. Genes Dev. 10, 620-633 (1996). (Pubitemid 26091772)
-
(1996)
Genes and Development
, vol.10
, Issue.5
, pp. 620-633
-
-
Devine, S.E.1
Boeke, J.D.2
-
28
-
-
0002617455
-
-
eds Craig N. L. Craigie R. Gellert M. & Lambowitz A. M. ASM Press Washington DC
-
Eickbush, T. H. in Mobile DNA II (eds Craig, N. L., Craigie, R., Gellert, M. & Lambowitz, A. M.) 813-835 (ASM Press, Washington DC, 2002).
-
(2002)
Mobile DNA II
, pp. 813-835
-
-
Eickbush, T.H.1
-
29
-
-
0036970123
-
Dictyostelium mobile elements: Strategies to amplify in a compact genome
-
DOI 10.1007/s000180200010
-
Winckler, T., Dingermann, T. & Glockner, G. Dictyostelium mobile elements: strategies to amplify in a compact genome. Cell. Mol. Life Sci. 59, 2097-2111 (2002). (Pubitemid 36140283)
-
(2002)
Cellular and Molecular Life Sciences
, vol.59
, Issue.12
, pp. 2097-2111
-
-
Winckler, T.1
Dingermann, T.2
Glockner, G.3
-
30
-
-
60149098474
-
Small RNAs as guardians of the genome
-
Malone, C. D. & Hannon, G. J. Small RNAs as guardians of the genome. Cell 136, 656-668 (2009).
-
(2009)
Cell.
, vol.136
, pp. 656-668
-
-
Malone, C.D.1
Hannon, G.J.2
-
31
-
-
23044490934
-
Transposon silencing and imprint establishment in mammalian germ cells
-
DOI 10.1101/sqb.2004.69.381
-
Bestor, T. H. & Bourc'his, D. Transposon silencing and imprint establishment in mammalian germ cells. Cold Spring Harb. Symp. Quant. Biol. 69, 381-387 (2004). (Pubitemid 41056576)
-
(2004)
Cold Spring Harbor Symposia on Quantitative Biology
, vol.69
, pp. 381-387
-
-
Bestor, T.H.1
Bourc'his, D.2
-
32
-
-
48349093493
-
An inside job for siRNAs
-
Golden, D. E., Gerbasi, V. R. & Sontheimer, E. J. An inside job for siRNAs. Mol. Cell 31, 309-312 (2008).
-
(2008)
Mol. Cell.
, vol.31
, pp. 309-312
-
-
Golden, D.E.1
Gerbasi, V.R.2
Sontheimer, E.J.3
-
33
-
-
42649120310
-
The APOBEC3 cytidine deaminases: An innate defensive network opposing exogenous retroviruses and endogenous retroelements
-
DOI 10.1146/annurev.immunol.26.021607.090350
-
Chiu, Y. L. & Greene, W. C. The APOBEC3 cytidine deaminases: an innate defensive network opposing exogenous retroviruses and endogenous retroelements. Annu. Rev. Immunol. 26, 317-353 (2008). (Pubitemid 351600379)
-
(2008)
Annual Review of Immunology
, vol.26
, pp. 317-353
-
-
Chiu, Y.-L.1
Greene, W.C.2
-
34
-
-
34548454995
-
SREBP controls oxygen-dependent mobilization of retrotransposons in fission yeast
-
Sehgal, A., Lee, C. Y. & Espenshade, P. J. SREBP controls oxygen-dependent mobilization of retrotransposons in fission yeast. PLoS Genet. 3, e131 (2007).
-
(2007)
PLoS Genet.
, vol.3
-
-
Sehgal, A.1
Lee, C.Y.2
Espenshade, P.J.3
-
35
-
-
34447328702
-
Phosphorylation Regulates Integration of the Yeast Ty5 Retrotransposon into Heterochromatin
-
DOI 10.1016/j.molcel.2007.06.010, PII S1097276507003851
-
Dai, J., Xie, W., Brady, T. L., Gao, J. & Voytas, D. F. Phosphorylation regulates integration of the yeast Ty5 retrotransposon into heterochromatin. Mol. Cell 27, 289-299 (2007). (Pubitemid 47058305)
-
(2007)
Molecular Cell
, vol.27
, Issue.2
, pp. 289-299
-
-
Dai, J.1
Xie, W.2
Brady, T.L.3
Gao, J.4
Voytas, D.F.5
-
36
-
-
23844474398
-
Stress activation and genomic impact of Tnt1 retrotransposons in solanaceae
-
Grandbastien, M. A. et al. Stress activation and genomic impact of Tnt1 retrotransposons in Solanaceae. Cytogenet. Genome Res. 110, 229-241 (2005).
-
(2005)
Cytogenet. Genome Res.
, vol.110
, pp. 229-241
-
-
Grandbastien, M.A.1
-
37
-
-
0027168422
-
Activation of tobacco retrotransposons during tissue culture
-
Hirochika, H. Activation of tobacco retrotransposons during tissue culture. EMBO J. 12, 2521-2528 (1993). (Pubitemid 23194203)
-
(1993)
EMBO Journal
, vol.12
, Issue.6
, pp. 2521-2528
-
-
Hirochika, H.1
-
38
-
-
0035089173
-
Tnt1 transposition events are induced by in vitro transformation of arabidopsis thaliana and transposed copies integrate into genes
-
Courtial, B. et al. Tnt1 transposition events are induced by in vitro transformation of Arabidopsis thaliana, and transposed copies integrate into genes. Mol. Genet. Genomics 265, 32-42 (2001).
-
(2001)
Mol. Genet. Genomics
, vol.265
, pp. 32-42
-
-
Courtial, B.1
-
39
-
-
0021715393
-
The significance of responses of the genome to challenge
-
McClintock, B. The significance of responses of the genome to challenge. Science 226, 792-801 (1984). (Pubitemid 15200674)
-
(1984)
Science
, vol.226
, Issue.4676
, pp. 792-801
-
-
McClintock, B.1
-
40
-
-
0003873979
-
-
Craig N.L. Craigie R. Gellert M. Lambowitz A.M. eds ASM Press Washington DC
-
Craig, N. L., Craigie, R., Gellert, M. & Lambowitz, A. M. (eds) Mobile DNA II (ASM Press, Washington DC, 2002).
-
(2002)
Mobile DNA II
-
-
-
41
-
-
0025245419
-
Regulation of transposition in bacteria
-
Kleckner, N. Regulation of transposition in bacteria. Annu. Rev. Cell Biol. 6, 297-327 (1990).
-
(1990)
Annu. Rev. Cell Biol.
, vol.6
, pp. 297-327
-
-
Kleckner, N.1
-
42
-
-
0022129513
-
Ty element transposition: reverse transcriptase and virus-like particles
-
Garfinkel, D. J., Boeke, J. D. & Fink, G. R. Ty element transposition: reverse transcriptase and virus-like particles. Cell 42, 507-517 (1985).
-
(1985)
Cell.
, vol.42
, pp. 507-517
-
-
Garfinkel, D.J.1
Boeke, J.D.2
Fink, G.R.3
-
43
-
-
0021799352
-
Ty elements transpose through an RNA intermediate
-
Boeke, J. D., Garfinkel, D. J., Styles, C. A. & Fink, G. R. Ty elements transpose through an RNA intermediate. Cell 40, 491-500 (1985). (Pubitemid 15076566)
-
(1985)
Cell
, vol.40
, Issue.3
, pp. 491-500
-
-
Boeke, J.D.1
Garfinkel, D.J.2
Styles, C.A.3
Fink, G.R.4
-
44
-
-
0024295403
-
The DNA intermediate in yeast Ty1 element transposition copurifies with virus-like particles: Cell-free Ty1 transposition
-
Eichinger, D. J. & Boeke, J. D. The DNA intermediate in yeast Ty1 element transposition copurifies with virus-like particles: cell-free Ty1 transposition. Cell 54, 955-966 (1988).
-
(1988)
Cell.
, vol.54
, pp. 955-966
-
-
Eichinger, D.J.1
Boeke, J.D.2
-
45
-
-
0027450385
-
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
-
DOI 10.1016/0092-8674(93)90078-5
-
Luan, D. D., Korman, M. H., Jakubczak, J. L. & Eickbush, T. H. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72, 595-605 (1993). (Pubitemid 23077747)
-
(1993)
Cell
, vol.72
, Issue.4
, pp. 595-605
-
-
Luan, D.D.1
Korman, M.H.2
Jakubczak, J.L.3
Eickbush, T.H.4
-
46
-
-
0036849412
-
LINEs mobilize SINEs in the eel through a shared 3′ sequence
-
DOI 10.1016/S0092-8674(02)01041-3
-
Kajikawa, M. & Okada, N. LINEs mobilize SINEs in the eel through a shared 3' sequence. Cell 111, 433-444 (2002). (Pubitemid 35341395)
-
(2002)
Cell
, vol.111
, Issue.3
, pp. 433-444
-
-
Kajikawa, M.1
Okada, N.2
-
47
-
-
0041353551
-
LINE-mediated retrotransposition of marked Alu sequences
-
DOI 10.1038/ng1223
-
Dewannieux, M., Esnault, C. & Heidmann, T. LINE-mediated retrotransposition of marked Alu sequences. Nature Genet. 35, 41-48 (2003). (Pubitemid 37048594)
-
(2003)
Nature Genetics
, vol.35
, Issue.1
, pp. 41-48
-
-
Dewannieux, M.1
Esnault, C.2
Heidmann, T.3
-
48
-
-
80051702066
-
Retrotransposition of marked SVA elements by human L1s in cultured cells
-
2 Jun 10.1093/ hmg/ddr245
-
Hancks, D. C., Goodier, J. L., Mandal, P. K., Cheung, L. E. & Kazazian, H. H. Jr. Retrotransposition of marked SVA elements by human L1s in cultured cells. Hum. Mol. Genet. 2 Jun 2011 (doi:10.1093/ hmg/ddr245).
-
(2011)
Hum. Mol. Genet.
-
-
Hancks, D.C.1
Goodier, J.L.2
Mandal, P.K.3
Cheung, L.E.4
Kazazian, Jr.H.H.5
-
49
-
-
34248141710
-
Distinct mechanisms for trans-mediated mobilization of cellular RNAs by the LINE-1 reverse transcriptase
-
DOI 10.1101/gr.5870107
-
Garcia-Perez, J. L., Doucet, A. J., Bucheton, A., Moran, J. V. & Gilbert, N. Distinct mechanisms for trans-mediated mobilization of cellular RNAs by the LINE-1 reverse transcriptase. Genome Res. 17, 602-611 (2007). (Pubitemid 46715510)
-
(2007)
Genome Research
, vol.17
, Issue.5
, pp. 602-611
-
-
Garcia-Perez, J.L.1
Doucet, A.J.2
Bucheton, A.3
Moran, J.V.4
Gilbert, N.5
-
50
-
-
23844510228
-
Multiple fates of L1 retrotransposition intermediates in cultured human cells
-
DOI 10.1128/MCB.25.17.7780-7795.2005
-
Gilbert, N., Lutz, S., Morrish, T. A. & Moran, J. V. Multiple fates of L1 retrotransposition intermediates in cultured human cells. Mol. Cell. Biol. 25, 7780-7795 (2005). (Pubitemid 41170138)
-
(2005)
Molecular and Cellular Biology
, vol.25
, Issue.17
, pp. 7780-7795
-
-
Gilbert, N.1
Lutz, S.2
Morrish, T.A.3
Moran, J.V.4
-
51
-
-
0036417244
-
A new family of chimeric retrotranscripts formed by a full copy of U6 small nuclear RNA fused to the 3′ terminus of L1
-
DOI 10.1006/geno.2002.6843
-
Buzdin, A. et al. A new family of chimeric retrotranscripts formed by a full copy of U6 small nuclear RNA fused to the 3' terminus of L1. Genomics 80, 402-406 (2002). (Pubitemid 35300738)
-
(2002)
Genomics
, vol.80
, Issue.4
, pp. 402-406
-
-
Buzdin, A.1
Ustyugova, S.2
Gogvadze, E.3
Vinogradova, T.4
Lebedev, Y.5
Sverdlov, E.6
-
52
-
-
33846012547
-
Mammalian small nucleolar RNAs are mobile genetic elements
-
Weber, M. J. Mammalian small nucleolar RNAs are mobile genetic elements. PLoS Genet. 2, e205 (2006).
-
(2006)
PLoS Genet.
, vol.2
-
-
Weber, M.J.1
-
53
-
-
0035144498
-
Human L1 retrotransposition: cis preference versus trans complementation
-
DOI 10.1128/MCB.21.4.1429-1439.2001
-
Wei, W. et al. Human L1 retrotransposition: cis preference versus trans complementation. Mol. Cell. Biol. 21, 1429-1439 (2001). (Pubitemid 32114989)
-
(2001)
Molecular and Cellular Biology
, vol.21
, Issue.4
, pp. 1429-1439
-
-
Wei, W.1
Gilbert, N.2
Ooi, S.L.3
Lawler, J.F.4
Ostertag, E.M.5
Kazazian, H.H.6
Boeke, J.D.7
Moran, J.V.8
-
54
-
-
0034079713
-
Human LINE retrotransposons generate processed pseudogenes
-
DOI 10.1038/74184
-
Esnault, C., Maestre, J. & Heidmann, T. Human LINE retrotransposons generate processed pseudogenes. Nature Genet. 24, 363-367 (2000). (Pubitemid 30187433)
-
(2000)
Nature Genetics
, vol.24
, Issue.4
, pp. 363-367
-
-
Esnault, C.1
Maestre, J.2
Heidmann, T.3
-
55
-
-
33645995109
-
Tn5 transposition: A molecular tool for studying protein structure-function
-
Reznikoff, W. S. Tn5 transposition: a molecular tool for studying protein structure-function. Biochem. Soc. Trans. 34, 320-323 (2006).
-
(2006)
Biochem. Soc. Trans.
, vol.34
, pp. 320-323
-
-
Reznikoff, W.S.1
-
57
-
-
0011665465
-
-
Eds Craig N. L. Craigie R. Gellert M. & Lambowitz A. M. ASM Press Washington DC
-
Rio, D. C. in Mobile DNA II (eds Craig, N. L., Craigie, R., Gellert, M. & Lambowitz, A. M.) 484-518 (ASM Press, Washington DC, 2002).
-
(2002)
Mobile DNA II
, pp. 484-518
-
-
Rio, D.C.1
-
58
-
-
0029655789
-
The Tc1 mariner transposon family
-
Plasterk, R. H. The Tc1/mariner transposon family. Curr. Top. Microbiol. Immunol. 204, 125-143 (1996).
-
(1996)
Curr. Top. Microbiol. Immunol.
, vol.204
, pp. 125-143
-
-
Plasterk, R.H.1
-
59
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
DOI 10.1038/35057062
-
Lander, E. S. et al. Initial sequencing and analysis of the human genome. Nature 409, 860-921 (2001). (Pubitemid 32165345)
-
(2001)
Nature
, vol.409
, Issue.6822
, pp. 860-921
-
-
Lander, E.S.1
-
60
-
-
33847633354
-
Bats with hATs: Evidence for recent DNA transposon activity in genus Myotis
-
DOI 10.1093/molbev/msl192
-
Ray, D. A., Pagan, H. J., Thompson, M. L. & Stevens, R. D. Bats with hATs: evidence for recent DNA transposon activity in genus Myotis. Mol. Biol. Evol. 24, 632-639 (2007). (Pubitemid 46355788)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.3
, pp. 632-639
-
-
Ray, D.A.1
Pagan, H.J.T.2
Thompson, M.L.3
Stevens, R.D.4
-
62
-
-
43149103661
-
Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus
-
DOI 10.1101/gr.071886.107
-
Ray, D. A. et al. Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus. Genome Res. 18, 717-728 (2008). (Pubitemid 351645062)
-
(2008)
Genome Research
, vol.18
, Issue.5
, pp. 717-728
-
-
Ray, D.A.1
Feschotte, C.2
Pagan, H.J.T.3
Smith, J.D.4
Pritham, E.J.5
Arensburger, P.6
Atkinson, P.W.7
Craig, N.L.8
-
63
-
-
0034828182
-
Drosophila euchromatic LTR retrotransposons are much younger than the host species in which they reside
-
DOI 10.1101/gr.164201
-
Bowen, N. J. & McDonald, J. F. Drosophila euchromatic LTR retrotransposons are much younger than the host species in which they reside. Genome Res. 11, 1527-1540 (2001). (Pubitemid 32894678)
-
(2001)
Genome Research
, vol.11
, Issue.9
, pp. 1527-1540
-
-
Bowen, N.J.1
McDonald, J.F.2
-
64
-
-
70450202132
-
The B73 maize genome: Complexity diversity and dynamics
-
Schnable, P. S. et al. The B73 maize genome: complexity, diversity, and dynamics. Science 326, 1112-1115 (2009).
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
-
65
-
-
0013630297
-
Nested retrotransposons in the intergenic regions of the maize genome
-
DOI 10.1126/science.274.5288.765
-
SanMiguel, P. et al. Nested retrotransposons in the intergenic regions of the maize genome. Science 274, 765-768 (1996). (Pubitemid 26398252)
-
(1996)
Science
, vol.274
, Issue.5288
, pp. 765-768
-
-
SanMiguel, P.1
Tikhonov, A.2
Jin, Y.-K.3
Motchoulskaia, N.4
Zakharov, D.5
Melake-Berhan, A.6
Springer, P.S.7
Edwards, K.J.8
Lee, M.9
Avramova, Z.10
Bennetzen, J.L.11
-
66
-
-
33645757337
-
Retroviral elements and their hosts: insertional mutagenesis in the mouse germ line
-
Maksakova, I. A. et al. Retroviral elements and their hosts: insertional mutagenesis in the mouse germ line. PLoS Genet. 2, e2 (2006).
-
(2006)
PLoS Genet.
, vol.2
-
-
Maksakova, I.A.1
-
67
-
-
34250813062
-
Insertional polymorphisms: A new lease of life for endogenous retroviruses in human disease
-
DOI 10.1016/j.tig.2007.05.004, PII S0168952507001758
-
Moyes, D., Griffiths, D. J. & Venables, P. J. Insertional polymorphisms: a new lease of life for endogenous retroviruses in human disease. Trends Genet. 23, 326-333 (2007). (Pubitemid 46978355)
-
(2007)
Trends in Genetics
, vol.23
, Issue.7
, pp. 326-333
-
-
Moyes, D.1
Griffiths, D.J.2
Venables, P.J.3
-
68
-
-
0037383453
-
ATLAS: A system to selectively identify human-specific L1 insertions
-
DOI 10.1086/373939
-
Badge, R. M., Alisch, R. S. & Moran, J. V. ATLAS: a system to selectively identify human-specific L1 insertions. Am. J. Hum. Genet. 72, 823-838 (2003). (Pubitemid 36403303)
-
(2003)
American Journal of Human Genetics
, vol.72
, Issue.4
, pp. 823-838
-
-
Badge, R.M.1
Alisch, R.S.2
Moran, J.V.3
-
69
-
-
0033786249
-
Reading between the LINEs: Human genomic variation induced by LINE-1 retrotransposition
-
Sheen, F. M. et al. Reading between the LINEs: human genomic variation induced by LINE-1 retrotransposition. Genome Res. 10, 1496-1508 (2000).
-
(2000)
Genome Res.
, vol.10
, pp. 1496-1508
-
-
Sheen, F.M.1
-
70
-
-
43049143055
-
Mapping and sequencing of structural variation from eight human genomes
-
DOI 10.1038/nature06862, PII NATURE06862
-
Kidd, J. M. et al. Mapping and sequencing of structural variation from eight human genomes. Nature 453, 56-64 (2008). (Pubitemid 351630326)
-
(2008)
Nature
, vol.453
, Issue.7191
, pp. 56-64
-
-
Kidd, J.M.1
Cooper, G.M.2
Donahue, W.F.3
Hayden, H.S.4
Sampas, N.5
Graves, T.6
Hansen, N.7
Teague, B.8
Alkan, C.9
Antonacci, F.10
Haugen, E.11
Zerr, T.12
Yamada, N.A.13
Tsang, P.14
Newman, T.L.15
Tuzun, E.16
Cheng, Z.17
Ebling, H.M.18
Tusneem, N.19
David, R.20
Gillett, W.21
Phelps, K.A.22
Weaver, M.23
Saranga, D.24
Brand, A.25
Tao, W.26
Gustafson, E.27
McKernan, K.28
Chen, L.29
Malig, M.30
Smith, J.D.31
Korn, J.M.32
McCarroll, S.A.33
Altshuler, D.A.34
Peiffer, D.A.35
Dorschner, M.36
Stamatoyannopoulos, J.37
Schwartz, D.38
Nickerson, D.A.39
Mullikin, J.C.40
Wilson, R.K.41
Bruhn, L.42
Olson, M.V.43
Kaul, R.44
Smith, D.R.45
Eichler, E.E.46
more..
-
71
-
-
79251493015
-
A human genome structural variation sequencing resource reveals insights into mutational mechanisms
-
Kidd, J. M. et al. A human genome structural variation sequencing resource reveals insights into mutational mechanisms. Cell 143, 837-847 (2010).
-
(2010)
Cell.
, vol.143
, pp. 837-847
-
-
Kidd, J.M.1
-
72
-
-
35348988679
-
Paired-end mapping reveals extensive structural variation in the human genome
-
DOI 10.1126/science.1149504
-
Korbel, J. O. et al. Paired-end mapping reveals extensive structural variation in the human genome. Science 318, 420-426 (2007). (Pubitemid 47614521)
-
(2007)
Science
, vol.318
, Issue.5849
, pp. 420-426
-
-
Korbel, J.O.1
Urban, A.E.2
Affourtit, J.P.3
Godwin, B.4
Grubert, F.5
Simons, J.F.6
Kim, P.M.7
Palejev, D.8
Carriero, N.J.9
Du, L.10
Taillon, B.E.11
Chen, Z.12
Tanzer, A.13
Saunders, A.C.E.14
Chi, J.15
Yang, F.16
Carter, N.P.17
Hurles, M.E.18
Weissman, S.M.19
Harkins, T.T.20
Gerstein, M.B.21
Egholm, M.22
Snyder, M.23
more..
-
73
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
Durbin, R. M. et al. A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073 (2010).
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
Durbin, R.M.1
-
74
-
-
84975804424
-
Mapping copy number variation by population-scale genome sequencing
-
Mills, R. E. et al. Mapping copy number variation by population-scale genome sequencing. Nature 470, 59-65 (2011).
-
(2011)
Nature
, vol.470
, pp. 59-65
-
-
Mills, R.E.1
-
75
-
-
0035865136
-
Target DNA structure plays a critical role in Tn7 transposition
-
DOI 10.1093/emboj/20.4.924
-
Kuduvalli, P. N., Rao, J. E. & Craig, N. L. Target DNA structure plays a critical role in Tn7 transposition. EMBO J. 20, 924-932 (2001). (Pubitemid 32167656)
-
(2001)
EMBO Journal
, vol.20
, Issue.4
, pp. 924-932
-
-
Kuduvalli, P.N.1
Rao, J.E.2
Craig, N.L.3
-
76
-
-
0001930678
-
-
Eds Craig N. L. Craigie R. Gellert M. & Lambowitz A. ASM Press Washington DC
-
Craig, N. L. in Mobile DNA II (eds Craig, N. L., Craigie, R., Gellert, M. & Lambowitz, A. M.) 423-456 (ASM Press, Washington DC, 2002).
-
(2002)
Mobile DNA II
, pp. 423-456
-
-
Craig, N.L.1
-
77
-
-
0029832183
-
Conjugating plasmids are preferred targets for Tn7
-
Wolkow, C. A., DeBoy, R. T. & Craig, N. L. Conjugating plasmids are preferred targets for Tn7. Genes Dev. 10, 2145-2157 (1996). (Pubitemid 26303870)
-
(1996)
Genes and Development
, vol.10
, Issue.17
, pp. 2145-2157
-
-
Wolkow, C.A.1
DeBoy, R.T.2
Craig, N.L.3
-
78
-
-
0033634865
-
Tn7 transposes proximal to DNA double-strand breaks and into regions where chromosomal DNA replication terminates
-
Peters, J. E. & Craig, N. L. Tn7 transposes proximal to DNA double-strand breaks and into regions where chromosomal DNA replication terminates. Mol. Cell 6, 573-582 (2000).
-
(2000)
Mol. Cell.
, vol.6
, pp. 573-582
-
-
Peters, J.E.1
Craig, N.L.2
-
79
-
-
79960114353
-
The drosophila gene disruption project: Progress using transposons with distinctive site-specificities
-
Bellen, H. J. et al. The Drosophila gene disruption project: progress using transposons with distinctive site-specificities. Genetics 188,731-743 (2011).
-
(2011)
Genetics
, vol.188
, pp. 731-743
-
-
Bellen, H.J.1
-
80
-
-
0009969062
-
Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
-
DOI 10.1016/S0092-8674(00)81997-2
-
Feng, Q., Moran, J., Kazazian, H. & Boeke, J. D. Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell 87, 905-916 (1996). (Pubitemid 26404289)
-
(1996)
Cell
, vol.87
, Issue.5
, pp. 905-916
-
-
Feng, Q.1
Moran, J.V.2
Kazazian Jr., H.H.3
Boeke, J.D.4
-
81
-
-
0032478313
-
Retrotransposon R1Bm endonuclease cleaves the target sequence
-
DOI 10.1073/pnas.95.5.2083
-
Feng, Q., Schumann, G. & Boeke, J. D. Retrotransposon R1Bm endonuclease cleaves the target sequence. Proc. Natl Acad. Sci. USA 95, 2083-2088 (1998). (Pubitemid 28145898)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.5
, pp. 2083-2088
-
-
Feng, Q.1
Schumann, G.2
Boeke, J.D.3
-
82
-
-
0033529244
-
Identification of the endonuclease domain encoded by R2 and other site- specific, non-long terminal repeat retrotransposable elements
-
DOI 10.1073/pnas.96.14.7847
-
Yang, J., Malik, H. S. & Eickbush, T. H. Identification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements. Proc. Natl Acad. Sci. USA 96, 7847-7852 (1999). (Pubitemid 29328370)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.14
, pp. 7847-7852
-
-
Yang, J.1
Malik, H.S.2
Eickbush, T.H.3
-
83
-
-
0142227237
-
Targeting survival: Integration site selection by retroviruses and LTR-Retrotransposons
-
DOI 10.1016/S0092-8674(03)00760-8
-
Bushman, F. D. Targeting survival: integration site selection by retroviruses and LTR-retrotransposons. Cell 115, 135-138 (2003). (Pubitemid 37329577)
-
(2003)
Cell
, vol.115
, Issue.2
, pp. 135-138
-
-
Bushman, F.D.1
-
84
-
-
18944382213
-
Happy together: The life and times of Ty retrotransposons and their hosts
-
DOI 10.1159/000084940
-
Lesage, P. & Todeschini, A. L. Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet. Genome Res. 110, 70-90 (2005). (Pubitemid 41159885)
-
(2005)
Cytogenetic and Genome Research
, vol.110
, Issue.1-4
, pp. 70-90
-
-
Lesage, P.1
Todeschini, A.L.2
-
85
-
-
0028936732
-
Requirement of RNA polymerase III transcription factors for in vitro position-specific integration of a retroviruslike element
-
Kirchner, J., Connolly, C. M. & Sandmeyer, S. B. Requirement of RNA polymerase III transcription factors for in vitro position-specific integration of a retroviruslike element. Science 267, 1488-1491 (1995).
-
(1995)
Science
, vol.267
, pp. 1488-1491
-
-
Kirchner, J.1
Connolly, C.M.2
Sandmeyer, S.B.3
-
86
-
-
0026518979
-
Ty3 integrates within the region of RNA polymerase III transcription initiation
-
Chalker, D. L. & Sandmeyer, S. B. Ty3 integrates within the region of RNA polymerase III transcription initiation. Genes Dev. 6, 117-128 (1992).
-
(1992)
Genes Dev.
, vol.6
, pp. 117-128
-
-
Chalker, D.L.1
Sandmeyer, S.B.2
-
87
-
-
0037135522
-
Mutational analysis of the transcription factor IIIB-DNA target of Ty3 retroelement integration
-
DOI 10.1074/jbc.M202729200
-
Yieh, L., Hatzis, H., Kassavetis, G. & Sandmeyer, S. B. Mutational analysis of the transcription factor IIIB-DNA target of Ty3 retroelement integration. J. Biol. Chem. 277, 25920-25928 (2002). (Pubitemid 34967072)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.29
, pp. 25920-25928
-
-
Yieh, L.1
Hatzis, H.2
Kassavetis, G.3
Sandmeyer, S.B.4
-
88
-
-
0034703073
-
The Brf and TATA-binding protein subunits of the RNA polymerase III transcription factor IIIB mediate position-specific integration of the gypsy-like element, Ty3
-
DOI 10.1074/jbc.M003149200
-
Yieh, L., Kassavetis, G., Geiduschek, E. P. & Sandmeyer, S. B. The Brf and TATA-binding protein subunits of the RNA polymerase III transcription factor IIIB mediate position-specific integration of the gypsy-like element, Ty3. J. Biol. Chem. 275, 29800-29807 (2000). (Pubitemid 32043865)
-
(2000)
Journal of Biological Chemistry
, vol.275
, Issue.38
, pp. 29800-29807
-
-
Yieh, L.1
Kassavetis, G.2
Geiduschek, E.P.3
Sandmeyer, S.B.4
-
89
-
-
3543090451
-
Local definition of Ty1 target preference by long terminal repeats and clustered tRNA genes
-
DOI 10.1101/gr.2052904
-
Bachman, N., Eby, Y. & Boeke, J. D. Local definition of Ty1 target preference by long terminal repeats and clustered tRNA genes. Genome Res. 14, 1232-1247 (2004). (Pubitemid 39029220)
-
(2004)
Genome Research
, vol.14
, Issue.7
, pp. 1232-1247
-
-
Bachmann, N.1
Eby, Y.2
Boeke, J.D.3
-
90
-
-
17444372794
-
TFIIIB subunit Bdp1p is required for periodic integration of the Ty1 retrotransposon and targeting of Isw2p to S. cerevisiae tDNAs
-
DOI 10.1101/gad.1299105
-
Bachman, N., Gelbart, M. E., Tsukiyama, T. & Boeke, J. D. TFIIIB subunit Bdp1p is required for periodic integration of the Ty1 retrotransposon and targeting of Isw2p to S. cerevisiae tDNAs. Genes Dev. 19, 955-964 (2005). (Pubitemid 40548063)
-
(2005)
Genes and Development
, vol.19
, Issue.8
, pp. 955-964
-
-
Bachman, N.1
Gelbart, M.E.2
Tsukiyama, T.3
Boeke, J.D.4
-
91
-
-
0037318210
-
Transcriptional interactions between yeast tRNA genes, flanking genes and Ty elements: A genomic point of view
-
DOI 10.1101/gr.612203
-
Bolton, E. C. & Boeke, J. D. Transcriptional interactions between yeast tRNA genes, flanking genes and Ty elements: a genomic point of view. Genome Res. 13, 254-263 (2003). (Pubitemid 36575773)
-
(2003)
Genome Research
, vol.13
, Issue.2
, pp. 254-263
-
-
Bolton, E.C.1
Boeke, J.D.2
-
92
-
-
0026019414
-
Adjacent pol II and pol III promoters: Transcription of the yeast retrotransposon Ty3 and a target tRNA gene
-
Kinsey, P. T. & Sandmeyer, S. B. Adjacent pol II and pol III promoters: transcription of the yeast retrotransposon Ty3 and a target tRNA gene. Nucleic Acids Res. 19, 1317-1324 (1991). (Pubitemid 21913221)
-
(1991)
Nucleic Acids Research
, vol.19
, Issue.6
, pp. 1317-1324
-
-
Kinsey, P.T.1
Sandmeyer, S.B.2
-
93
-
-
0026315792
-
Transfer RNA genes from dictyostelium discoideum are frequently associated with repetitive elements and contain consensus boxes in their 5 and 3-flanking regions
-
Hofmann, J. et al. Transfer RNA genes from Dictyostelium discoideum are frequently associated with repetitive elements and contain consensus boxes in their 5' and 3'-flanking regions. J. Mol. Biol. 222, 537-552 (1991).
-
(1991)
J. Mol. Biol.
, vol.222
, pp. 537-552
-
-
Hofmann, J.1
-
94
-
-
37549005579
-
Protein interactions involved in tRNA gene-specific integration of Dictyostelium discoideum non-long terminal repeat retrotransposon TRE5-A
-
Chung, T., Siol, O., Dingermann, T. & Winckler, T. Protein interactions involved in tRNA gene-specific integration of Dictyostelium discoideum non-long terminal repeat retrotransposon TRE5-A. Mol. Cell. Biol. 27, 8492-8501 (2007).
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 8492-8501
-
-
Chung, T.1
Siol, O.2
Dingermann, T.3
Winckler, T.4
-
95
-
-
0034552029
-
Fission yeast retrotransposon Tf1 integration is targeted to 5 ends of open reading frames
-
Behrens, R., Hayles, J. & Nurse, P. Fission yeast retrotransposon Tf1 integration is targeted to 5' ends of open reading frames. Nucleic Acids Res. 28, 4709-4716 (2000).
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 4709-4716
-
-
Behrens, R.1
Hayles, J.2
Nurse, P.3
-
96
-
-
75649099781
-
High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in schizosaccharomyces pombe
-
Guo, Y. & Levin, H. L. High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in Schizosaccharomyces pombe. Genome Res. 20, 239-248 (2010).
-
(2010)
Genome Res.
, vol.20
, pp. 239-248
-
-
Guo, Y.1
Levin, H.L.2
-
97
-
-
0036463827
-
A long terminal repeat retrotransposon of fission yeast has strong preferences for specific sites of insertion
-
DOI 10.1128/EC.01.1.44-55.2002
-
Singleton, T. L. & Levin, H. L. A long terminal repeat retrotransposon of fission yeast has strong preferences for specific sites of insertion. Eukaryotic Cell 1, 44-55 (2002). (Pubitemid 36562347)
-
(2002)
Eukaryotic Cell
, vol.1
, Issue.1
, pp. 44-55
-
-
Singleton, T.L.1
Levin, H.L.2
-
98
-
-
0033847212
-
Protein kinase A and mitogen-activated protein kinase pathways antagonistically regulate fission yeast fbp1 transcription by employing different modes of action at two upstream activation sites
-
DOI 10.1128/MCB.20.17.6426-6434.2000
-
Neely, L. A. & Hoffman, C. S. Protein kinase A and mitogen-activated protein kinase pathways antagonistically regulate fission yeast fbp1 transcription by employing different modes of action at two upstream activation sites. Mol. Cell. Biol. 20, 6426-6434 (2000). (Pubitemid 30650230)
-
(2000)
Molecular and Cellular Biology
, vol.20
, Issue.17
, pp. 6426-6434
-
-
Neely, L.A.1
Hoffman, C.S.2
-
99
-
-
78650052337
-
The determinants that specify the integration pattern of retrotransposon Tf1 in the fbp1 promoter of schizosaccharomyces pombe
-
Majumdar, A., Chatterjee, A. G., Ripmaster, T. L. & Levin, H. L. The determinants that specify the integration pattern of retrotransposon Tf1 in the fbp1 promoter of Schizosaccharomyces pombe. J. Virol. 85, 519-529 (2010).
-
(2010)
J. Virol.
, vol.85
, pp. 519-529
-
-
Majumdar, A.1
Chatterjee, A.G.2
Ripmaster, T.L.3
Levin, H.L.4
-
100
-
-
12244267727
-
Global transcriptional responses of fission yeast to environmental stress
-
DOI 10.1091/mbc.E02-08-0499
-
Chen, D. et al. Global transcriptional responses of fission yeast to environmental stress. Mol. Biol. Cell 14, 214-229 (2003). (Pubitemid 36106031)
-
(2003)
Molecular Biology of the Cell
, vol.14
, Issue.1
, pp. 214-229
-
-
Chen, D.1
Toone, W.M.2
Mata, J.3
Lyne, R.4
Burns, G.5
Kivinen, K.6
Brazma, A.7
Jones, N.8
Bahler, J.9
-
101
-
-
0033799581
-
Poised for contagion: Evolutionary origins of the infectious abilities of invertebrate retroviruses
-
Malik, H. S., Henikoff, S. & Eickbush, T. H. Poised for contagion: evolutionary origins of the infectious abilities of invertebrate retroviruses. Genome Res. 10, 1307-1318 (2000).
-
(2000)
Genome Res.
, vol.10
, pp. 1307-1318
-
-
Malik, H.S.1
Henikoff, S.2
Eickbush, T.H.3
-
102
-
-
19344375031
-
Retroviral DNA integration: ASLV HIV and MLV show distinct target site preferences
-
Mitchell, R. S. et al. Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences. PLoS Biol. 2, e234 (2004).
-
(2004)
PLoS Biol.
, vol.2
-
-
Mitchell, R.S.1
-
103
-
-
60649104262
-
Mechanisms governing lentivirus integration site selection
-
Ciuffi, A. Mechanisms governing lentivirus integration site selection. Curr. Gene Ther. 8, 419-429 (2008).
-
(2008)
Curr. Gene Ther.
, vol.8
, pp. 419-429
-
-
Ciuffi, A.1
-
104
-
-
33745745419
-
Retroviral DNA integration: HIV and the role of LEDGF/p75
-
DOI 10.1016/j.tig.2006.05.006, PII S016895250600148X
-
Ciuffi, A. & Bushman, F. D. Retroviral DNA integration: HIV and the role of LEDGF/p75. Trends Genet. 22, 388-395 (2006). (Pubitemid 44015973)
-
(2006)
Trends in Genetics
, vol.22
, Issue.7
, pp. 388-395
-
-
Ciuffi, A.1
Bushman, F.D.2
-
105
-
-
42949114952
-
The lentiviral integrase binding protein LEDGF p75 and HIV-1 replication
-
Engelman, A. & Cherepanov, P. The lentiviral integrase binding protein LEDGF/p75 and HIV-1 replication. PLoS Pathog. 4, e1000046 (2008).
-
(2008)
PLoS Pathog.
, vol.4
-
-
Engelman, A.1
Cherepanov, P.2
-
106
-
-
43049182995
-
Integrase LEDGF p75 and HIV replication
-
Poeschla, E. M. Integrase, LEDGF/p75 and HIV replication. Cell. Mol. Life Sci. 65, 1403-1424 (2008).
-
(2008)
Cell. Mol. Life Sci.
, vol.65
, pp. 1403-1424
-
-
Poeschla, E.M.1
-
107
-
-
0033057257
-
Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotransposons
-
Malik, H. S. & Eickbush, T. H. Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotransposons. J. Virol. 73, 5186-5190 (1999). (Pubitemid 29246785)
-
(1999)
Journal of Virology
, vol.73
, Issue.6
, pp. 5186-5190
-
-
Malik, H.S.1
Eickbush, T.H.2
-
108
-
-
40449136688
-
Chromodomains direct integration of retrotransposons to heterochromatin
-
DOI 10.1101/gr.7146408
-
Gao, X., Hou, Y., Ebina, H., Levin, H. L. & Voytas, D. F. Chromodomains direct integration of retrotransposons to heterochromatin. Genome Res. 18, 359-369 (2008). (Pubitemid 351347079)
-
(2008)
Genome Research
, vol.18
, Issue.3
, pp. 359-369
-
-
Gao, X.1
Hou, Y.2
Ebina, H.3
Levin, H.L.4
Voytas, D.F.5
-
110
-
-
0028855624
-
The saccharomyces Ty5 retrotransposon family is associated with origins of DNA replication at the telomeres and the silent mating locus HMR
-
USA
-
Zou, S., Wright, D. A. & Voytas, D. F. The Saccharomyces Ty5 retrotransposon family is associated with origins of DNA replication at the telomeres and the silent mating locus HMR. Proc. Natl Acad. Sci. USA 92, 920-924 (1995).
-
(1995)
Proc. Natl Acad. Sci.
, vol.92
, pp. 920-924
-
-
Zou, S.1
Wright, D.A.2
Voytas, D.F.3
-
111
-
-
0029985540
-
The Saccharomyces retrotransposon Ty5 integrates preferentially into regions of silent chromatin at the telomeres and mating loci
-
Zou, S., Ke, N., Kim, J. M. & Voytas, D. F. The Saccharomyces retrotransposon Ty5 integrates preferentially into regions of silent chromatin at the telomeres and mating loci. Genes Dev. 10, 634-645 (1996). (Pubitemid 26091773)
-
(1996)
Genes and Development
, vol.10
, Issue.5
, pp. 634-645
-
-
Zou, S.1
Ke, N.2
Kim, J.M.3
Voytas, D.F.4
-
112
-
-
0032086911
-
A single amino acid change in the yeast retrotransposon Ty5 abolishes targeting to silent chromatin
-
Gai, X. & Voytas, D. F. A single amino acid change in the yeast retrotransposon Ty5 abolishes targeting to silent chromatin. Mol. Cell 1, 1051-1055 (1998). (Pubitemid 128379266)
-
(1998)
Molecular Cell
, vol.1
, Issue.7
, pp. 1051-1055
-
-
Gai, X.1
Voytas, D.F.2
-
113
-
-
0034816496
-
Targeting of the yeast Ty5 retrotransposon to silent chromatin is mediated by interactions between integrase and Sir4p
-
DOI 10.1128/MCB.21.19.6606-6614.2001
-
Xie, W. et al. Targeting of the yeast Ty5 retrotransposon to silent chromatin is mediated by interactions between integrase and Sir4p. Mol. Cell. Biol. 21, 6606-6614 (2001). (Pubitemid 32927427)
-
(2001)
Molecular and Cellular Biology
, vol.21
, Issue.19
, pp. 6606-6614
-
-
Xie, W.1
Gai, X.2
Zhu, Y.3
Zappulla, D.C.4
Sternglanz, R.5
Voytas, D.F.6
-
114
-
-
0038612981
-
Controlling integration specificity of a yeast retrotransposon
-
DOI 10.1073/pnas.1036705100
-
Zhu, Y., Dai, J., Fuerst, P. G. & Voytas, D. F. Controlling integration specificity of a yeast retrotransposon. Proc. Natl Acad. Sci. USA 100, 5891-5895 (2003). (Pubitemid 36576903)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.10
, pp. 5891-5895
-
-
Zhu, Y.1
Dai, J.2
Fuerst, P.G.3
Voytas, D.F.4
-
115
-
-
38949084139
-
Retrotransposon target site selection by imitation of a cellular protein
-
DOI 10.1128/MCB.01502-07
-
Brady, T. L., Fuerst, P. G., Dick, R. A., Schmidt, C. & Voytas, D. F. Retrotransposon target site selection by imitation of a cellular protein. Mol. Cell. Biol. 28, 1230-1239 (2008). (Pubitemid 351214126)
-
(2008)
Molecular and Cellular Biology
, vol.28
, Issue.4
, pp. 1230-1239
-
-
Brady, T.L.1
Fuerst, P.G.2
Dick, R.A.3
Schmidt, C.4
Voytas, D.F.5
-
116
-
-
78650449644
-
Evolution of diverse mechanisms for protecting chromosome ends by drosophila TART telomere retrotransposons
-
USA
-
George, J. A., Traverse, K. L., DeBaryshe, P. G., Kelley, K. J. & Pardue, M. L. Evolution of diverse mechanisms for protecting chromosome ends by Drosophila TART telomere retrotransposons. Proc. Natl Acad. Sci. USA 107, 21052-21057 (2010).
-
(2010)
Proc. Natl Acad. Sci.
, vol.107
, pp. 21052-21057
-
-
George, J.A.1
Traverse, K.L.2
DeBaryshe, P.G.3
Kelley, K.J.4
Pardue, M.L.5
-
117
-
-
0026759776
-
HeT-A a transposable element specifically involved in healing broken chromosome ends in drosophila melanogaster
-
Biessmann, H. et al. HeT-A, a transposable element specifically involved in "healing" broken chromosome ends in Drosophila melanogaster. Mol. Cell. Biol. 12, 3910-3918 (1992).
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 3910-3918
-
-
Biessmann, H.1
-
118
-
-
23944448661
-
Telomere-specific non-LTR retrotransposons and telomere maintenance in the silkworm, Bombyx mori
-
DOI 10.1007/s10577-005-0990-9
-
Fujiwara, H., Osanai, M., Matsumoto, T. & Kojima, K. K. Telomere-specific non-LTR retrotransposons and telomere maintenance in the silkworm, Bombyx mori. Chromosome Res. 13, 455-467 (2005). (Pubitemid 41205629)
-
(2005)
Chromosome Research
, vol.13
, Issue.5
, pp. 455-467
-
-
Fujiwara, H.1
Osanai, M.2
Matsumoto, T.3
Kojima, K.K.4
-
119
-
-
77951989845
-
A subtelomeric non-LTR retrotransposon hebe in the bdelloid rotifer adineta vaga is subject to inactivation by deletions but not 5' truncations
-
Gladyshev, E. A. & Arkhipova, I. R. A subtelomeric non-LTR retrotransposon Hebe in the bdelloid rotifer Adineta vaga is subject to inactivation by deletions but not 5' truncations. Mob. DNA 1, 12 (2010).
-
(2010)
Mob. DNA
, vol.1
, pp. 12
-
-
Gladyshev, E.A.1
Arkhipova, I.R.2
-
120
-
-
33947128732
-
Endonuclease-independent LINE-1 retrotransposition at mammalian telomeres
-
DOI 10.1038/nature05560, PII NATURE05560
-
Morrish, T. A. et al. Endonuclease-independent LINE-1 retrotransposition at mammalian telomeres. Nature 446, 208-212 (2007). (Pubitemid 46398662)
-
(2007)
Nature
, vol.446
, Issue.7132
, pp. 208-212
-
-
Morrish, T.A.1
Garcia-Perez, J.L.2
Stamato, T.D.3
Taccioli, G.E.4
Sekiguchi, J.5
Moran, J.V.6
-
121
-
-
0036613245
-
DNA repair mediated by endonuclease-independent LINE-1 retrotransposition
-
Morrish, T. A. et al. DNA repair mediated by endonuclease-independent LINE-1 retrotransposition. Nature Genet. 31, 159-165 (2002).
-
(2002)
Nature Genet.
, vol.31
, pp. 159-165
-
-
Morrish, T.A.1
-
123
-
-
0037047355
-
Genomic deletions created upon LINE-1 retrotransposition
-
Gilbert, N., Lutz-Prigge, S. & Moran, J. V. Genomic deletions created upon LINE-1 retrotransposition. Cell 110, 315-325 (2002).
-
(2002)
Cell.
, vol.110
, pp. 315-325
-
-
Gilbert, N.1
Lutz-Prigge, S.2
Moran, J.V.3
-
124
-
-
0037047396
-
Human L1 retrotransposition is associated with genetic instability in vivo
-
Symer, D. E. et al. Human L1 retrotransposition is associated with genetic instability in vivo. Cell 110, 327-338 (2002).
-
(2002)
Cell.
, vol.110
, pp. 327-338
-
-
Symer, D.E.1
-
125
-
-
33748645500
-
GENCODE: Producing a reference annotation for ENCODE
-
Harrow, J. et al. GENCODE: producing a reference annotation for ENCODE. Genome Biol. 7 (Suppl. 1), 4 (2006).
-
(2006)
Genome Biol.
, vol.7
, Issue.1
, pp. 4
-
-
Harrow, J.1
-
126
-
-
79959201528
-
The GENCODE exome: Sequencing the complete human exome
-
Coffey, A. J. et al. The GENCODE exome: sequencing the complete human exome. Eur. J. Hum. Genet. 19, 827-831 (2011).
-
(2011)
Eur. J. Hum. Genet.
, vol.19
, pp. 827-831
-
-
Coffey, A.J.1
-
128
-
-
0032559061
-
Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure
-
DOI 10.1021/bi981858s
-
Cost, G. J. & Boeke, J. D. Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure. Biochemistry 37, 18081-18093 (1998). (Pubitemid 29023965)
-
(1998)
Biochemistry
, vol.37
, Issue.51
, pp. 18081-18093
-
-
Cost, G.J.1
Boeke, J.D.2
-
129
-
-
0023946286
-
Human genome organization: Alu LINES and the molecular structure of metaphase chromosome bands
-
Korenberg, J. R. & Rykowski, M. C. Human genome organization: Alu, LINES, and the molecular structure of metaphase chromosome bands. Cell 53, 391-400 (1988).
-
(1988)
Cell.
, vol.53
, pp. 391-400
-
-
Korenberg, J.R.1
Rykowski, M.C.2
-
130
-
-
0035856494
-
Selection on Alu sequences
-
Brookfield, J. F. Selection on Alu sequences? Curr. Biol. 11, R900-R901 (2001).
-
(2001)
Curr. Biol.
, vol.11
-
-
Brookfield, J.F.1
-
131
-
-
0034983677
-
Selection against deleterious LINE-1-containing loci in the human lineage
-
Boissinot, S., Entezam, A. & Furano, A. V. Selection against deleterious LINE-1-containing loci in the human lineage. Mol. Biol. Evol. 18, 926-935 (2001). (Pubitemid 32520464)
-
(2001)
Molecular Biology and Evolution
, vol.18
, Issue.6
, pp. 926-935
-
-
Boissinot, S.1
Entezam, A.2
Furano, A.V.3
-
132
-
-
33745469628
-
Fitness cost of LINE-1 (L1) activity in humans
-
DOI 10.1073/pnas.0603334103
-
Boissinot, S., Davis, J., Entezam, A., Petrov, D. & Furano, A. V. Fitness cost of LINE-1 (L1) activity in humans. Proc. Natl Acad. Sci. USA 103, 9590-9594 (2006). (Pubitemid 43955869)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.25
, pp. 9590-9594
-
-
Boissinot, S.1
Davis, J.2
Entezam, A.3
Petrov, D.4
Furano, A.V.5
-
133
-
-
2442667886
-
Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes
-
DOI 10.1038/nature02536
-
Han, J. S., Szak, S. T. & Boeke, J. D. Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes. Nature 429, 268-274 (2004). (Pubitemid 38684807)
-
(2004)
Nature
, vol.429
, Issue.6989
, pp. 268-274
-
-
Han, J.S.1
Szak, S.T.2
Boeke, J.D.3
-
134
-
-
0344826526
-
RNA truncation by premature polyadenylation attenuates human mobile element activity
-
DOI 10.1038/ng1269
-
Perepelitsa-Belancio, V. & Deininger, P. RNA truncation by premature polyadenylation attenuates human mobile element activity. Nature Genet. 35, 363-366 (2003). (Pubitemid 37486920)
-
(2003)
Nature Genetics
, vol.35
, Issue.4
, pp. 363-366
-
-
Perepelitsa-Belancio, V.1
Deininger, P.2
-
135
-
-
24144489347
-
Two independent retrotransposon insertions at the same site within the coding region of BTK
-
Conley, M. E., Partain, J. D., Norland, S. M., Shurtleff, S. A. & Kazazian, H. H. Jr. Two independent retrotransposon insertions at the same site within the coding region of BTK. Hum. Mutat. 25, 324-325 (2005).
-
(2005)
Hum. Mutat.
, vol.25
, pp. 324-325
-
-
Conley, M.E.1
Partain, J.D.2
Norland, S.M.3
Shurtleff, S.A.4
Kazazian, Jr.H.H.5
-
136
-
-
0032993456
-
Hereditary desmoid disease in a family with a germline Alu I repeat mutation of the APC gene
-
Halling, K. C. et al. Hereditary desmoid disease in a family with a germline Alu I repeat mutation of the APC gene. Hum. Hered. 49, 97-102 (1999). (Pubitemid 29129269)
-
(1999)
Human Heredity
, vol.49
, Issue.2
, pp. 97-102
-
-
Halling, K.C.1
Lazzaro, C.R.2
Honchel, R.3
Bufill, J.A.4
Powell, S.M.5
Arndt, C.A.S.6
Lindor, N.M.7
-
137
-
-
0027874926
-
Haemophilia B due to a de novo insertion of a human-specific Alu subfamily member within the coding region of the factor IX gene
-
Vidaud, D. et al. Haemophilia B due to a de novo insertion of a human-specific Alu subfamily member within the coding region of the factor IX gene. Eur. J. Hum. Genet. 1, 30-36 (1993).
-
(1993)
Eur. J. Hum. Genet.
, vol.1
, pp. 30-36
-
-
Vidaud, D.1
-
138
-
-
0035863793
-
Target DNA chromatinization modulates nicking by L1 endonuclease
-
Cost, G. J., Golding, A., Schlissel, M. S. & Boeke, J. D. Target DNA chromatinization modulates nicking by L1 endonuclease. Nucleic Acids Res. 29, 573-577 (2001). (Pubitemid 32060943)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.2
, pp. 573-577
-
-
Cost, G.J.1
Golding, A.2
Schlissel, M.S.3
Boeke, J.D.4
-
139
-
-
0242416979
-
The methylated component of the Neurospora crassa genome
-
DOI 10.1038/nature01564
-
Selker, E. U. et al. The methylated component of the Neurospora crassa genome. Nature 422, 893-897 (2003). (Pubitemid 36520041)
-
(2003)
Nature
, vol.422
, Issue.6934
, pp. 893-897
-
-
Selker, E.U.1
Tountas, N.A.2
Cross, S.H.3
Margolin, B.S.4
Murphy, J.G.5
Bird, A.P.6
Freitag, M.7
-
140
-
-
0030840954
-
Cytosine methylation and the ecology of intragenomic parasites
-
DOI 10.1016/S0168-9525(97)01181-5, PII S0168952597011815
-
Yoder, J. A., Walsh, C. P. & Bestor, T. H. Cytosine methylation and the ecology of intragenomic parasites. Trends Genet. 13, 335-340 (1997). (Pubitemid 27309911)
-
(1997)
Trends in Genetics
, vol.13
, Issue.8
, pp. 335-340
-
-
Yoder, J.A.1
Walsh, C.P.2
Bestor, T.H.3
-
141
-
-
15744401773
-
Eukaryotic cytosine methyltransferases
-
DOI 10.1146/annurev.biochem.74.010904.153721
-
Goll, M. G. & Bestor, T. H. Eukaryotic cytosine methyltransferases. Annu. Rev. Biochem. 74, 481-514 (2005). (Pubitemid 40995515)
-
(2005)
Annual Review of Biochemistry
, vol.74
, pp. 481-514
-
-
Goll, M.G.1
Bestor, T.H.2
-
142
-
-
34247479414
-
Epigenetic decisions in mammalian germ cells
-
DOI 10.1126/science.1137544
-
Schaefer, C. B., Ooi, S. K., Bestor, T. H. & Bourc'his, D. Epigenetic decisions in mammalian germ cells. Science 316, 398-399 (2007). (Pubitemid 46651477)
-
(2007)
Science
, vol.316
, Issue.5823
, pp. 398-399
-
-
Schaefer, C.B.1
Ooi, S.K.T.2
Bestor, T.H.3
Bourc'his, D.4
-
143
-
-
55549102967
-
Keeping active endogenous retroviral-like elements in check: The epigenetic perspective
-
Maksakova, I. A., Mager, D. L. & Reiss, D. Keeping active endogenous retroviral-like elements in check: the epigenetic perspective. Cell. Mol. Life Sci. 65, 3329-3347 (2008).
-
(2008)
Cell. Mol. Life Sci.
, vol.65
, pp. 3329-3347
-
-
Maksakova, I.A.1
Mager, D.L.2
Reiss, D.3
-
144
-
-
70349276670
-
Bursts of retrotransposition reproduced in arabidopsis
-
Tsukahara, S. et al. Bursts of retrotransposition reproduced in Arabidopsis. Nature 461, 423-426 (2009).
-
(2009)
Nature
, vol.461
, pp. 423-426
-
-
Tsukahara, S.1
-
145
-
-
4544223707
-
Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L
-
DOI 10.1038/nature02886
-
Bourc'his, D. & Bestor, T. H. Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L. Nature 431, 96-99 (2004). (Pubitemid 39215115)
-
(2004)
Nature
, vol.430
, Issue.7004
, pp. 96-99
-
-
Bourc'His, D.1
Bestor, T.H.2
-
146
-
-
77249170184
-
Establishing maintaining and modifying DNA methylation patterns in plants and animals
-
Law, J. A. & Jacobsen, S. E. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nature Rev. Genet. 11, 204-220 (2010).
-
(2010)
Nature Rev. Genet.
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
147
-
-
63349111149
-
Small RNAs and the control of transposons and viruses in drosophila
-
van Rij, R. P. & Berezikov, E. Small RNAs and the control of transposons and viruses in Drosophila. Trends Microbiol. 17, 163-171 (2009).
-
(2009)
Trends Microbiol.
, vol.17
, pp. 163-171
-
-
Van Rij, R.P.1
Berezikov, E.2
-
148
-
-
58449134534
-
Small silencing RNAs: An expanding universe
-
Ghildiyal, M. & Zamore, P. D. Small silencing RNAs: an expanding universe. Nature Rev. Genet. 10, 94-108 (2009).
-
(2009)
Nature Rev. Genet.
, vol.10
, pp. 94-108
-
-
Ghildiyal, M.1
Zamore, P.D.2
-
149
-
-
33947303168
-
Transposable elements and the epigenetic regulation of the genome
-
DOI 10.1038/nrg2072, PII NRG2072
-
Slotkin, R. K. & Martienssen, R. Transposable elements and the epigenetic regulation of the genome. Nature Rev. Genet. 8, 272-285 (2007). (Pubitemid 46439291)
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.4
, pp. 272-285
-
-
Slotkin, R.K.1
Martienssen, R.2
-
150
-
-
78650306521
-
Small RNA sorting: Matchmaking for argonautes
-
Czech, B. & Hannon, G. J. Small RNA sorting: matchmaking for Argonautes. Nature Rev. Genet. 12, 19-31 (2011).
-
(2011)
Nature Rev. Genet.
, vol.12
, pp. 19-31
-
-
Czech, B.1
Hannon, G.J.2
-
151
-
-
36749037521
-
The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race
-
DOI 10.1126/science.1146484
-
Aravin, A. A., Hannon, G. J. & Brennecke, J. The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race. Science 318, 761-764 (2007). (Pubitemid 351411762)
-
(2007)
Science
, vol.318
, Issue.5851
, pp. 761-764
-
-
Aravin, A.A.1
Hannon, G.J.2
Brennecke, J.3
-
152
-
-
77954385645
-
Small RNA-mediated gene silencing pathways in C elegans
-
Fischer, S. E. Small RNA-mediated gene silencing pathways in C. elegans. Int. J. Biochem. Cell Biol. 42, 1306-1315 (2010).
-
(2010)
Int. J. Biochem. Cell Biol.
, vol.42
, pp. 1306-1315
-
-
Fischer, S.E.1
-
153
-
-
0345306117
-
Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi
-
DOI 10.1038/nature02107
-
Sijen, T. & Plasterk, R. H. Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi. Nature 426, 310-314 (2003). (Pubitemid 37463152)
-
(2003)
Nature
, vol.426
, Issue.6964
, pp. 310-314
-
-
Sijen, T.1
Plasterk, R.H.A.2
-
154
-
-
0032717319
-
The rde-1 gene, RNA interference, and transposon silencing in C. elegans
-
DOI 10.1016/S0092-8674(00)81644-X
-
Tabara, H. et al. The rde-1 gene, RNA interference, and transposon silencing in C. elegans. Cell 99, 123-132 (1999). (Pubitemid 29491779)
-
(1999)
Cell
, vol.99
, Issue.2
, pp. 123-132
-
-
Tabara, H.1
Sarkissian, M.2
Kelly, W.G.3
Fleenor, J.4
Grishok, A.5
Timmons, L.6
Fire, A.7
Mello, C.C.8
-
155
-
-
65549105694
-
Specialized piRNA pathways act in germline and somatic tissues of the drosophila ovary
-
Malone, C. D. et al. Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary. Cell 137, 522-535 (2009).
-
(2009)
Cell.
, vol.137
, pp. 522-535
-
-
Malone, C.D.1
-
156
-
-
77957793321
-
An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in drosophila
-
Olivieri, D., Sykora, M. M., Sachidanandam, R., Mechtler, K. & Brennecke, J. An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in Drosophila. EMBO J. 29, 3301-3317 (2010).
-
(2010)
EMBO J.
, vol.29
, pp. 3301-3317
-
-
Olivieri, D.1
Sykora, M.M.2
Sachidanandam, R.3
Mechtler, K.4
Brennecke, J.5
-
157
-
-
77957775830
-
Somatic piRNA biogenesis
-
Zamore, P. D. Somatic piRNA biogenesis. EMBO J. 29, 3219-3221 (2010).
-
(2010)
EMBO J.
, vol.29
, pp. 3219-3221
-
-
Zamore, P.D.1
-
158
-
-
57149104113
-
An epigenetic role for maternally inherited piRNAs in transposon silencing
-
DOI 10.1126/science.1165171
-
Brennecke, J. et al. An epigenetic role for maternally inherited piRNAs in transposon silencing. Science 322, 1387-1392 (2008). (Pubitemid 352775252)
-
(2008)
Science
, vol.322
, Issue.5906
, pp. 1387-1392
-
-
Brennecke, J.1
Malone, C.D.2
Aravin, A.A.3
Sachidanandam, R.4
Stark, A.5
Hannon, G.J.6
-
159
-
-
59349118366
-
Epigenetic reprogramming and small RNA silencing of transposable elements in pollen
-
Slotkin, R. K. et al. Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell 136, 461-472 (2009).
-
(2009)
Cell.
, vol.136
, pp. 461-472
-
-
Slotkin, R.K.1
-
160
-
-
33748363713
-
L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells
-
DOI 10.1038/nsmb1141, PII NSMB1141
-
Yang, N. & Kazazian, H. H. Jr. L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells. Nature Struct. Mol. Biol. 13, 763-771 (2006). (Pubitemid 44338769)
-
(2006)
Nature Structural and Molecular Biology
, vol.13
, Issue.9
, pp. 763-771
-
-
Yang, N.1
Kazazian Jr., H.H.2
-
161
-
-
41649116098
-
DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes
-
DOI 10.1101/gad.1640708
-
Kuramochi-Miyagawa, S. et al. DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes. Genes Dev. 22, 908-917 (2008). (Pubitemid 351482844)
-
(2008)
Genes and Development
, vol.22
, Issue.7
, pp. 908-917
-
-
Kuramochi-Miyagawa, S.1
Watanabe, T.2
Gotoh, K.3
Totoki, Y.4
Toyoda, A.5
Ikawa, M.6
Asada, N.7
Kojima, K.8
Yamaguchi, Y.9
Ijiri, T.W.10
Hata, K.11
Li, E.12
Matsuda, Y.13
Kimura, T.14
Okabe, M.15
Sakaki, Y.16
Sasaki, H.17
Nakano, T.18
-
162
-
-
67349141725
-
Loss of the mili-interacting tudor domain-containing protein-1 activates transposons and alters the Mili-associated small RNA profile
-
Reuter, M. et al. Loss of the Mili-interacting Tudor domain-containing protein-1 activates transposons and alters the Mili-associated small RNA profile. Nature Struct. Mol. Biol. 16, 639-646 (2009).
-
(2009)
Nature Struct. Mol. Biol.
, vol.16
, pp. 639-646
-
-
Reuter, M.1
-
163
-
-
48549092573
-
Mouse maelstrom a component of nuage is essential for spermatogenesis and transposon repression in meiosis
-
Soper, S. F. et al. Mouse maelstrom, a component of nuage, is essential for spermatogenesis and transposon repression in meiosis. Dev. Cell 15, 285-297 (2008).
-
(2008)
Dev. Cell.
, vol.15
, pp. 285-297
-
-
Soper, S.F.1
-
164
-
-
70349446101
-
Posttranslational interference of Ty1 retrotransposition by antisense RNAs
-
USA
-
Matsuda, E. & Garfinkel, D. J. Posttranslational interference of Ty1 retrotransposition by antisense RNAs. Proc. Natl Acad. Sci. USA 106, 15657-15662 (2009).
-
(2009)
Proc. Natl Acad. Sci.
, vol.106
, pp. 15657-15662
-
-
Matsuda, E.1
Garfinkel, D.J.2
-
165
-
-
33746581694
-
Mutations in the gene encoding the 3′-5′ DNA exonuclease TREX1 cause Aicardi-Goutieres syndrome at the AGS1 locus
-
DOI 10.1038/ng1845, PII NG1845
-
Crow, Y. J. et al. Mutations in the gene encoding the 3'-5' DNA exonuclease TREX1 cause Aicardi-Goutieres syndrome at the AGS1 locus. Nature Genet. 38, 917-920 (2006). (Pubitemid 44141660)
-
(2006)
Nature Genetics
, vol.38
, Issue.8
, pp. 917-920
-
-
Crow, Y.J.1
Hayward, B.E.2
Parmar, R.3
Robins, P.4
Leitch, A.5
Ali, M.6
Black, D.N.7
Van Bokhoven, H.8
Brunner, H.G.9
Hamel, B.C.10
Corry, P.C.11
Cowan, F.M.12
Frints, S.G.13
Klepper, J.14
Livingston, J.H.15
Lynch, S.A.16
Massey, R.F.17
Meritet, J.F.18
Michaud, J.L.19
Ponsot, G.20
Voit, T.21
Lebon, P.22
Bonthron, D.T.23
Jackson, A.P.24
Barnes, D.E.25
Lindahl, T.26
more..
-
166
-
-
49549100511
-
TREX1 prevents cell-intrinsic initiation of autoimmunity
-
Stetson, D. B., Ko, J. S., Heidmann, T. & Medzhitov, R. TREX1 prevents cell-intrinsic initiation of autoimmunity. Cell 134, 587-598 (2008).
-
(2008)
Cell.
, vol.134
, pp. 587-598
-
-
Stetson, D.B.1
Ko, J.S.2
Heidmann, T.3
Medzhitov, R.4
-
167
-
-
0021111519
-
Members of the kpni family of long interspersed repeated sequences join and interrupt alpha-satellite in the monkey genome
-
Grimaldi, G. & Singer, M. F. Members of the KpnI family of long interspersed repeated sequences join and interrupt alpha-satellite in the monkey genome. Nucleic Acids Res. 11, 321-338 (1983).
-
(1983)
Nucleic Acids Res.
, vol.11
, pp. 321-338
-
-
Grimaldi, G.1
Singer, M.F.2
-
168
-
-
43049094016
-
The diversity of retrotransposons and the properties of their reverse transcriptases
-
Eickbush, T. H. & Jamburuthugoda, V. K. The diversity of retrotransposons and the properties of their reverse transcriptases. Virus Res. 134, 221-234 (2008).
-
(2008)
Virus Res.
, vol.134
, pp. 221-234
-
-
Eickbush, T.H.1
Jamburuthugoda, V.K.2
-
169
-
-
34248358963
-
Progress in understanding the biology of the human mutagen LINE-1
-
DOI 10.1002/humu.20486
-
Babushok, D. V. & Kazazian, H. H. Jr. Progress in understanding the biology of the human mutagen LINE-1. Hum. Mutat. 28, 527-539 (2007). (Pubitemid 46744283)
-
(2007)
Human Mutation
, vol.28
, Issue.6
, pp. 527-539
-
-
Babushok, D.V.1
Kazazian Jr., H.H.2
-
170
-
-
65649135139
-
Genetic evidence that the non-homologous end-joining repair pathway is involved in LINE retrotransposition
-
Suzuki, J. et al. Genetic evidence that the non-homologous end-joining repair pathway is involved in LINE retrotransposition. PLoS Genet. 5, e1000461 (2009).
-
(2009)
PLoS Genet.
, vol.5
-
-
Suzuki, J.1
-
171
-
-
44149094236
-
ERCC1/XPF limits L1 retrotransposition
-
Gasior, S. L., Roy-Engel, A. M. & Deininger, P. L. ERCC1/XPF limits L1 retrotransposition. DNA Repair (Amst.) 7, 983-989 (2008).
-
(2008)
DNA Repair Amst.
, vol.7
, pp. 983-989
-
-
Gasior, S.L.1
Roy-Engel, A.M.2
Deininger, P.L.3
-
172
-
-
77955495399
-
Epigenetic silencing of engineered L1 retrotransposition events in human embryonic carcinoma cells
-
Garcia-Perez, J. L. et al. Epigenetic silencing of engineered L1 retrotransposition events in human embryonic carcinoma cells. Nature 466, 769-773 (2010).
-
(2010)
Nature
, vol.466
, pp. 769-773
-
-
Garcia-Perez, J.L.1
-
173
-
-
0025879563
-
Regulation of Drosophila P element transposition
-
Rio, D. C. Regulation of Drosophila P element transposition. Trends Genet. 7, 282-287 (1991). (Pubitemid 121001936)
-
(1991)
Trends in Genetics
, vol.7
, Issue.9
, pp. 282-287
-
-
Rio, D.C.1
-
174
-
-
0028110848
-
Gypsy transposition correlates with the production of a retroviral envelope-like protein under the tissue-specific control of the Drosophila flamenco gene
-
Pelisson, A. et al. Gypsy transposition correlates with the production of a retroviral envelope-like protein under the tissue-specific control of the Drosophila flamenco gene. EMBO J. 13, 4401-4411 (1994). (Pubitemid 24295212)
-
(1994)
EMBO Journal
, vol.13
, Issue.18
, pp. 4401-4411
-
-
Pelisson, A.1
Sun Song, U.2
Prud'homme, N.3
Smith, P.A.4
Bucheton, A.5
Corces, V.G.6
-
175
-
-
0028795178
-
Flamenco a gene controlling the gypsy retrovirus of drosophila melanogaster
-
Prud'homme, N., Gans, M., Masson, M., Terzian, C. & Bucheton, A. Flamenco, a gene controlling the gypsy retrovirus of Drosophila melanogaster. Genetics 139, 697-711 (1995).
-
(1995)
Genetics
, vol.139
, pp. 697-711
-
-
Prudhomme, N.1
Gans, M.2
Masson, M.3
Terzian, C.4
Bucheton, A.5
-
176
-
-
0028274570
-
Developmental and cell type specificity of LINE-1 expression in mouse testis: Implications for transposition
-
Branciforte, D. & Martin, S. L. Developmental and cell type specificity of LINE-1 expression in mouse testis: implications for transposition. Mol. Cell. Biol. 14, 2584-2592 (1994). (Pubitemid 24108241)
-
(1994)
Molecular and Cellular Biology
, vol.14
, Issue.4
, pp. 2584-2592
-
-
Branciforte, D.1
Martin, S.L.2
-
177
-
-
0028925748
-
Tightly regulated developmentally specific expression of the first open reading frame from LINE-1 during mouse embryogenesis
-
USA
-
Trelogan, S. A. & Martin, S. L. Tightly regulated, developmentally specific expression of the first open reading frame from LINE-1 during mouse embryogenesis. Proc. Natl Acad. Sci. USA 92, 1520-1524 (1995).
-
(1995)
Proc. Natl Acad. Sci.
, vol.92
, pp. 1520-1524
-
-
Trelogan, S.A.1
Martin, S.L.2
-
178
-
-
63149141367
-
Retrotransposon RNA expression and evidence for retrotransposition events in human oocytes
-
Georgiou, I. et al. Retrotransposon RNA expression and evidence for retrotransposition events in human oocytes. Hum. Mol. Genet. 18, 1221-1228 (2009).
-
(2009)
Hum. Mol. Genet.
, vol.18
, pp. 1221-1228
-
-
Georgiou, I.1
-
179
-
-
0036899669
-
A mouse model of human L1 retrotransposition
-
DOI 10.1038/ng1022
-
Ostertag, E. M. et al. A mouse model of human L1 retrotransposition. Nature Genet. 32, 655-660 (2002). (Pubitemid 35435180)
-
(2002)
Nature Genetics
, vol.32
, Issue.4
, pp. 655-660
-
-
Ostertag, E.M.1
DeBerardinis, R.J.2
Goodier, J.L.3
Zhang, Y.4
Yang, N.5
Gerton, G.L.6
Kazazian Jr., H.H.7
-
180
-
-
78751550533
-
Epigenetic control of retrotransposon expression in human embryonic stem cells
-
Macia, A. et al. Epigenetic control of retrotransposon expression in human embryonic stem cells. Mol. Cell. Biol. 31, 300-316 (2011).
-
(2011)
Mol. Cell. Biol.
, vol.31
, pp. 300-316
-
-
Macia, A.1
-
181
-
-
0141852498
-
-
Eds. Craig N. L. Craigie R. Gellert M. & Lambowitz A. M. ASM Press Washington DC
-
Federoff, N. in Mobile DNA II (eds. Craig, N. L., Craigie, R., Gellert, M. & Lambowitz, A. M.) 997-1007 (ASM Press, Washington DC, 2002).
-
(2002)
Mobile DNA II
, pp. 997-1007
-
-
Federoff, N.1
-
182
-
-
0021248573
-
High-frequency excision of transposable element Tc 1 in the nematode Caenorhabditis elegans is limited to somatic cells
-
Emmons, S. W. & Yesner, L. High-frequency excision of transposable element Tc1 in the nematode Caenorhabditis elegans is limited to somatic cells. Cell 36, 599-605 (1984). (Pubitemid 14126198)
-
(1984)
Cell
, vol.36
, Issue.3
, pp. 599-605
-
-
Emmons, S.W.1
Yesner, L.2
-
183
-
-
76549117971
-
Transposon-induced gene activation as a mechanism generating cluster shape somatic variation in grapevine
-
Fernandez, L., Torregrosa, L., Segura, V., Bouquet, A. & Martinez-Zapater, J. M. Transposon-induced gene activation as a mechanism generating cluster shape somatic variation in grapevine. Plant J. 61, 545-557 (2010).
-
(2010)
Plant J.
, vol.61
, pp. 545-557
-
-
Fernandez, L.1
Torregrosa, L.2
Segura, V.3
Bouquet, A.4
Martinez-Zapater, J.M.5
-
184
-
-
0025223152
-
Identification, characterization, and cell specificity of a human LINE-1 promoter
-
Swergold, G. D. Identification, characterization, and cell specificity of a human LINE-1 promoter. Mol. Cell. Biol. 10, 6718-6729 (1990). (Pubitemid 120004617)
-
(1990)
Molecular and Cellular Biology
, vol.10
, Issue.12
, pp. 6718-6729
-
-
Swergold, G.D.1
-
185
-
-
78549247463
-
L1 retrotransposition in neurons is modulated by MeCP2
-
Muotri, A. R. et al. L1 retrotransposition in neurons is modulated by MeCP2. Nature 468, 443-446 (2010).
-
(2010)
Nature
, vol.468
, pp. 443-446
-
-
Muotri, A.R.1
-
186
-
-
0035818519
-
Chromosomal variation in neurons of the developing and adult mammalian nervous system
-
DOI 10.1073/pnas.231487398
-
Rehen, S. K. et al. Chromosomal variation in neurons of the developing and adult mammalian nervous system. Proc. Natl Acad. Sci. USA 98, 13361-13366 (2001). (Pubitemid 33051368)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.23
, pp. 13361-13366
-
-
Rehen, S.K.1
McConnell, M.J.2
Kaushal, D.3
Kingsbury, M.A.4
Yang, A.H.5
Chun, J.6
-
187
-
-
77955673258
-
Neuronal DNA content variation DCV with regional and individual differences in the human brain
-
Westra, J. W. et al. Neuronal DNA content variation (DCV) with regional and individual differences in the human brain. J. Comp. Neurol. 518, 3981-4000 (2010).
-
(2010)
J. Comp. Neurol.
, vol.518
, pp. 3981-4000
-
-
Westra, J.W.1
-
188
-
-
77956865601
-
All y all need to know bout retroelements in cancer
-
Belancio, V. P., Roy-Engel, A. M. & Deininger, P. L. All y'all need to know 'bout retroelements in cancer. Semin. Cancer Biol. 20, 200-210 (2010).
-
(2010)
Semin. Cancer Biol.
, vol.20
, pp. 200-210
-
-
Belancio, V.P.1
Roy-Engel, A.M.2
Deininger, P.L.3
-
189
-
-
0030591769
-
Differential methylation of human LINE-1 retrotransposons in malignant cells
-
DOI 10.1016/0378-1119(96)00205-3, PII S0378111996002053
-
Alves, G., Tatro, A. & Fanning, T. Differential methylation of human LINE-1 retrotransposons in malignant cells. Gene 176, 39-44 (1996). (Pubitemid 26375750)
-
(1996)
Gene
, vol.176
, Issue.1-2
, pp. 39-44
-
-
Alves, G.1
Tatro, A.2
Fanning, T.3
-
190
-
-
0029964886
-
Comparative expression of the LINE-1 p40 protein in human breast carcinomas and normal breast tissues
-
Asch, H. L. et al. Comparative expression of the LINE-1 p40 protein in human breast carcinomas and normal breast tissues. Oncol. Res. 8, 239-247 (1996). (Pubitemid 26357607)
-
(1996)
Oncology Research
, vol.8
, Issue.6
, pp. 239-247
-
-
Asch, H.L.1
Eliacin, E.2
Fanning, T.G.3
Connolly, J.L.4
Bratthauer, G.5
Asch, B.B.6
-
191
-
-
33744466012
-
L1 retrotransposition in nondividing and primary human somatic cells
-
DOI 10.1073/pnas.0601954103
-
Kubo, S. et al. L1 retrotransposition in nondividing and primary human somatic cells. Proc. Natl Acad. Sci. USA 103, 8036-8041 (2006). (Pubitemid 43801048)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.21
, pp. 8036-8041
-
-
Kubo, S.1
Del Carmen Seleme, M.2
Soifer, H.S.3
Perez, J.L.G.4
Moran, J.V.5
Kazazian Jr., H.H.6
Kasahara, N.7
-
192
-
-
33846938255
-
Cell divisions are required for L1 retrotransposition
-
DOI 10.1128/MCB.01888-06
-
Shi, X., Seluanov, A. & Gorbunova, V. Cell divisions are required for L1 retrotransposition. Mol. Cell. Biol. 27, 1264-1270 (2007). (Pubitemid 46239810)
-
(2007)
Molecular and Cellular Biology
, vol.27
, Issue.4
, pp. 1264-1270
-
-
Shi, X.1
Seluanov, A.2
Gorbunova, V.3
|