Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos

Developmental Cell

Volumn 7, Issue 4, 2004, Pages 597-606

  Peaston, Anne E ^a,c   Evsikov, Alexei V ^a   Graber, Joel H ^a   de Vries, Wilhelmine N ^a   Holbrook, Andrea E ^a   Solter, Davor ^b   Knowles, Barbara B ^a  

^a JACKSON LABORATORY   (United States)

^b MAX PLANCK INSTITUTE OF IMMUNOBIOLOGY AND EPIGENETICS   (Germany)

^c UNIVERSITY OF SYDNEY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; EMBRYO; EMBRYONAL TISSUE; GENE CONTROL; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENE POOL; GENOME; HOST; LONG TERMINAL REPEAT; MAMMAL; MOTHER; MOUSE; NERVE FIBER; NONHUMAN; OOCYTE; PREIMPLANTATION EMBRYO; PRIORITY JOURNAL; PROMOTER REGION; RETROPOSON; TRANSPOSON;

ANIMALS; BASE SEQUENCE; BLASTOCYST; CONSENSUS SEQUENCE; EMBRYONIC DEVELOPMENT; EXONS; FEMALE; GENE EXPRESSION REGULATION, DEVELOPMENTAL; INTRONS; MICE; MICE, INBRED STRAINS; MOLECULAR SEQUENCE DATA; OOCYTES; PHYLOGENY; PREGNANCY; RETROELEMENTS; TERMINAL REPEAT SEQUENCES; TRANSCRIPTION, GENETIC;

ILEX COOKII; MAMMALIA;

EID: 5044251591     PISSN: 15345807     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.devcel.2004.09.004     Document Type: Article

References (65)

1. Altschul S.F. Gish W. Miller W. Myers E.W. Lipman D.J. Basic local alignment search tool J. Mol. Biol. 215 1990 403-410
2. Arney K.L. Bao S. Bannister A.J. Kouzarides T. Surani M.A. Histone methylation defines epigenetic asymmetry in the mouse zygote Int. J. Dev. Biol. 46 2002 317-320
3. Bachvarova R. Small B2 RNAs in mouse oocytes, embryos, and somatic tissues Dev. Biol. 130 1988 513-523
4. Benit L. De Parseval N. Casella J.F. Callebaut I. Cordonnier A. Heidmann T. Cloning of a new murine endogenous retrovirus, MuERV-L, with strong similarity to the human HERV-L element and with a gag coding sequence closely related to the Fv1 restriction gene J. Virol. 71 1997 5652-5657
5. Boguski M.S. Lowe T.M. Tolstoshev C.M. dbEST-database for expressed sequence tags Nat. Genet. 4 1993 332-333
6. Britten R.J. Mobile elements inserted in the distant past have taken on important functions Gene 205 1997 177-182
7. Britten R.J. Davidson E.H. Gene regulation for higher cells: a theory Science 165 1969 349-357
8. Brulet P. Condamine H. Jacob F. Spatial distribution of transcripts of the long repeated ETn sequence during early mouse embryogenesis Proc. Natl. Acad. Sci. USA 82 1985 2054-2058
9. Carter M.G. Hamatani T. Sharov A.A. Carmack C.E. Qian Y. Aiba K. Ko N.T. Dudekula D.B. Brzoska P.M. Hwang S.S. Ko M.S. In situ-synthesized novel microarray optimized for mouse stem cell and early developmental expression profiling Genome Res. 13 2003 1011-1021
10. Davidson E.H. Posakony J.W. Repetitive sequence transcripts in development Nature 297 1982 633-635
11. Doolittle W.F. Sapienza C. Selfish genes, the phenotype paradigm and genome evolution Nature 284 1980 601-603
12. Evsikov A.V. de Vries W.N. Peaston A.E. Radford E.E. Fancher K.S. Chen F.H. Blake J.A. Bult C.J. Latham K.E. Solter D. Knowles B.B. Systems biology of the 2-cell mouse embryo Cytogenet. Genome Res. 105 2004 240-250
13. Freitag, M., Lee, D.W., Kothe, G.O., Pratt, R.J., Aramayo, R., and Selker, E.U. (2004). DNA methylation is independent of RNA interference in Neurospora. Science 304, 1939.
14. Hakimi M.A. Bochar D.A. Schmiesing J.A. Dong Y. Barak O.G. Speicher D.W. Yokomori K. Shiekhattar R. A chromatin remodelling complex that loads cohesin onto human chromosomes Nature 418 2002 994-998
15. Hamatani T. Carter M.G. Sharov A.A. Ko M.S. Dynamics of global gene expression changes during mouse preimplantation development Dev. Cell 6 2004 117-131
16. Hannon G.J. RNA interference Nature 418 2002 244-251
17. Hickey D.A. Selfish DNA: a sexually-transmitted nuclear parasite Genetics 101 1982 519-531
18. Hu G.K. Madore S.J. Moldover B. Jatkoe T. Balaban D. Thomas J. Wang Y. Predicting splice variant from DNA chip expression data Genome Res. 11 2001 1237-1245
19. International Human Genome Sequencing Consortium Initial sequencing and analysis of the human genome Nature 409 2001 860-921
20. Jordan I.K. Rogozin I.B. Glazko G.V. Koonin E.V. Origin of a substantial fraction of human regulatory sequences from transposable elements Trends Genet. 19 2003 68-72
21. Jurka J. Repbase update: a database and an electronic journal of repetitive elements Trends Genet. 16 2000 418-420
22. Keshet E. Schiff R. Itin A. Mouse retrotransposons: a cellular reservoir of long terminal repeat (LTR) elements with diverse transcriptional specificities Adv. Cancer Res. 56 1991 215-251
23. Kigami D. Minami N. Takayama H. Imai H. MuERV-L is one of the earliest transcribed genes in mouse one-cell embryos Biol. Reprod. 68 2003 651-654
24. Kondo Y. Issa J.P. Enrichment for histone H3 lysine 9 methylation at Alu repeats in human cells J. Biol. Chem. 278 2003 27658-27662
25. Latham K.E. Schultz R.M. Embryonic genome activation Front. Biosci. 6 2001 D748-D759
26. Lawrence C.E. Altschul S.F. Boguski M.S. Liu J.S. Neuwald A.F. Wootton J.C. Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment Science 262 1993 208-214
27. Loftus S.K. Morris J.A. Carstea E.D. Gu J.Z. Cummings C. Brown A. Ellison J. Ohno K. Rosenfeld M.A. Tagle D.A. et al. Murine model of Niemann-Pick C disease: mutation in a cholesterol homeostasis gene Science 277 1997 232-235
28. Mayer W. Niveleau A. Walter J. Fundele R. Haaf T. Demethylation of the zygotic paternal genome Nature 403 2000 501-502
29. McClintock B. The origin and behavior of mutable loci in maize Proc. Natl. Acad. Sci. USA 36 1950 344-355
30. McClintock B. Induction of instability at selected loci in maize Genetics 38 1953 579-599
31. Medstrand P. van de Lagemaat L.N. Mager D.L. Retroelement distributions in the human genome: variations associated with age and proximity to genes Genome Res. 12 2002 1483-1495
32. Miller I. Freund J.E. Probability and Statistics for Engineers 1965 Prentice-Hall, Inc Englewood Cliffs, NJ
33. Miller W.J. McDonald J.F. Nouaud D. Anxolabehere D. Molecular domestication-more than a sporadic episode in evolution Genetica 107 1999 197-207
34. Monk M. Boubelik M. Lehnert S. Temporal and regional changes in DNA methylation in the embryonic, extraembryonic and germ cell lineages during mouse embryo development Development 99 1987 371-382
35. Mouse Genome Sequencing Consortium Initial sequencing and comparative analysis of the mouse genome Nature 420 2002 520-562
36. Ning Z. Cox A.J. Mullikin J.C. Ssaha: a fast search method for large dna databases Genome Res. 11 2001 1725-1729
37. Norton J.D. Hogan B.L. Temporal and tissue-specific expression of distinct retrovirus-like (VL30) elements during mouse development Dev. Biol. 125 1988 226-228
38. Oh B. Hwang S.Y. Solter D. Knowles B.B. Spindlin, a major maternal transcript expressed in the mouse during the transition from oocyte to embryo Development 124 1997 493-503
39. Oh B. Hwang S.-Y. de Vries W.N. Solter D. Knowles B.B. Identification of genes and processes guiding the transition between the mammalian gamete and embryo In: Richter J.D. (Ed.) Advances in Molecular Biology: A Comparative Methods Approach to the Study of Oocytes and Embryos 1999 101-126 Oxford University Press Oxford
40. Oh B. Hwang S.-Y. McLaughlin J. Solter D. Knowles B.B. Timely translation during the mouse oocyte-to-embryo transition Development 127 2000 3795-3803
41. Orgel L.E. Crick F.H. Selfish DNA: the ultimate parasite Nature 284 1980 604-607
42. Ostertag E.M. DeBerardinis R.J. Goodier J.L. Zhang Y. Yang N. Gerton G.L. Kazazian H.H. Jr. A mouse model of human L1 retrotransposition Nat. Genet. 32 2002 655-660
43. Oswald J. Engemann S. Lane N. Mayer W. Olek A. Fundele R. Dean W. Reik W. Walter J. Active demethylation of the paternal genome in the mouse zygote Curr. Biol. 10 2000 475-478
44. Padgett R.A. Grabowski P.J. Konarska M.M. Seiler S. Sharp P.A. Splicing of messenger RNA precursors Annu. Rev. Biochem. 55 1986 1119-1150
45. Piko L. Hammons M.D. Taylor K.D. Amounts, synthesis, and some properties of intracisternal A particle-related RNA in early mouse embryos Proc. Natl. Acad. Sci. USA 81 1984 488-492
46. Pittoggi C. Sciamanna I. Mattei E. Beraldi R. Lobascio A.M. Mai A. Quaglia M.G. Lorenzini R. Spadafora C. Role of endogenous reverse transcriptase in murine early embryo development Mol. Reprod. Dev. 66 2003 225-236
47. Poznanski A.A. Calarco P.G. The expression of intracisternal A particle genes in the preimplantation mouse embryo Dev. Biol. 143 1991 271-281
48. Reese M.G. Eeckman F.H. Kulp D. Haussler D. Improved splice site detection in Genie J. Comput. Biol. 4 1997 311-323
49. Rothstein J.L. Johnson D. DeLoia J.A. Skowronski J. Solter D. Knowles B. Gene expression during preimplantation mouse development Genes Dev. 6 1992 1190-1201
50. Santos F. Hendrich B. Reik W. Dean W. Dynamic reprogramming of DNA methylation in the early mouse embryo Dev. Biol. 241 2002 172-182
51. Schramke V. Allshire R. Hairpin RNAs and retrotransposon LTRs effect RNAi and chromatin-based gene silencing Science 301 2003 1069-1074
52. Smit A.F. Identification of a new, abundant superfamily of mammalian LTR-transposons Nucleic Acids Res. 21 1993 1863-1872
53. Smit, A.F.A. (1996). Structure and evolution of mammalian interspersed repeats. PhD thesis, University of Southern California, Los Angeles, Los Angeles, California.
54. Smit A.F. Interspersed repeats and other mementos of transposable elements in mammalian genomes Curr. Opin. Genet. Dev. 9 1999 657-663
55. Solter D. Knowles B.B. Immunosurgery of mouse blastocyst Proc. Natl. Acad. Sci. USA 72 1975 5099-5102
56. Speek M. Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes Mol. Cell. Biol. 21 2001 1973-1985
57. Staley J.P. Guthrie C. Mechanical devices of the spliceosome: motors, clocks, springs, and things Cell 92 1998 315-326
58. Svoboda P. Stein P. Hayashi H. Schultz R.M. Selective reduction of dormant maternal mRNAs in mouse oocytes by RNA interference Development 127 2000 4147-4156
59. Svoboda P. Stein P. Anger M. Bernstein E. Hannon G.J. Schultz R.M. RNAi and expression of retrotransposons MuERV-L and IAP in preimplantation mouse embryos Dev. Biol. 269 2004 276-285
60. Taylor K.D. Piko L. Patterns of mRNA prevalence and expression of B1 and B2 transcripts in early mouse embryos Development 101 1987 877-892
61. van de Lagemaat L.N. Landry J.-R. Mager D.L. Medstrand P. Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions Trends Genet. 90 2003 530-536
62. Volpe T.A. Kidner C. Hall I.M. Teng G. Grewal S.I. Martienssen R.A. Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi Science 297 2002 1833-1837
63. Walsh C.P. Bestor T.H. Cytosine methylation and mammalian development Genes Dev. 13 1999 26-34
64. Wang Q.T. Piotrowska K. Ciemerych M.A. Milenkovic L. Scott M.P. Davis R.W. Zernicka-Goetz M. A genome-wide study of gene activity reveals developmental signaling pathways in the preimplantation mouse embryo Dev. Cell 6 2004 133-144
65. Yoder J.A. Walsh C.P. Bestor T.H. Cytosine methylation and the ecology of intragenomic parasites Trends Genet. 13 1997 335-340