-
1
-
-
66149157000
-
Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome
-
R.M. Voorhees, A. Weixlbaumer, D. Loakes, A.C. Kelley, and V. Ramakrishnan Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome Nat. Struct. Mol. Biol. 16 2009 528 533
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 528-533
-
-
Voorhees, R.M.1
Weixlbaumer, A.2
Loakes, D.3
Kelley, A.C.4
Ramakrishnan, V.5
-
2
-
-
84877310529
-
Structures of the human and Drosophila 80S ribosome
-
A.M. Anger, J.P. Armache, O. Berninghausen, M. Habeck, M. Subklewe, D.N. Wilson, and R. Beckmann Structures of the human and Drosophila 80S ribosome Nature 497 2013 80 85
-
(2013)
Nature
, vol.497
, pp. 80-85
-
-
Anger, A.M.1
Armache, J.P.2
Berninghausen, O.3
Habeck, M.4
Subklewe, M.5
Wilson, D.N.6
Beckmann, R.7
-
3
-
-
83855162728
-
The structure of the eukaryotic ribosome at 3.0 A resolution
-
A. Ben-Shem, N. Garreau de Loubresse, S. Melnikov, L. Jenner, G. Yusupova, and M. Yusupov The structure of the eukaryotic ribosome at 3.0 A resolution Science 334 2011 1524 1529
-
(2011)
Science
, vol.334
, pp. 1524-1529
-
-
Ben-Shem, A.1
Garreau De Loubresse, N.2
Melnikov, S.3
Jenner, L.4
Yusupova, G.5
Yusupov, M.6
-
5
-
-
70350588648
-
The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA
-
T.M. Schmeing, R.M. Voorhees, A.C. Kelley, Y.G. Gao, F.V.t. Murphy, J.R. Weir, and V. Ramakrishnan The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA Science 326 2009 688 694
-
(2009)
Science
, vol.326
, pp. 688-694
-
-
Schmeing, T.M.1
Voorhees, R.M.2
Kelley, A.C.3
Gao, Y.G.4
Murphy, F.V.T.5
Weir, J.R.6
Ramakrishnan, V.7
-
6
-
-
84928560614
-
Structure of the E. Coli ribosome-EF-Tu complex at < 3 Å resolution by Cs-corrected cryo-EM
-
N. Fischer, P. Neumann, A.L. Konevega, L.V. Bock, R. Ficner, M.V. Rodnina, and H. Stark Structure of the E. coli ribosome-EF-Tu complex at < 3 Å resolution by Cs-corrected cryo-EM Nature 520 2015 567 570
-
(2015)
Nature
, vol.520
, pp. 567-570
-
-
Fischer, N.1
Neumann, P.2
Konevega, A.L.3
Bock, L.V.4
Ficner, R.5
Rodnina, M.V.6
Stark, H.7
-
7
-
-
0026639881
-
Unusual resistance of peptidyl transferase to protein extraction procedures
-
H.F. Noller, V. Hoffarth, and L. Zimniak Unusual resistance of peptidyl transferase to protein extraction procedures Science 256 1992 1416 1419
-
(1992)
Science
, vol.256
, pp. 1416-1419
-
-
Noller, H.F.1
Hoffarth, V.2
Zimniak, L.3
-
8
-
-
80053155455
-
Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3
-
H. Jin, A.C. Kelley, and V. Ramakrishnan Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3 Proc. Natl. Acad. Sci. U. S. A. 108 2011 15798 15803
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 15798-15803
-
-
Jin, H.1
Kelley, A.C.2
Ramakrishnan, V.3
-
9
-
-
84862908487
-
Crystal structure of release factor RF3 trapped in the GTP state on a rotated conformation of the ribosome
-
J. Zhou, L. Lancaster, S. Trakhanov, and H.F. Noller Crystal structure of release factor RF3 trapped in the GTP state on a rotated conformation of the ribosome RNA 18 2012 230 240
-
(2012)
RNA
, vol.18
, pp. 230-240
-
-
Zhou, J.1
Lancaster, L.2
Trakhanov, S.3
Noller, H.F.4
-
10
-
-
79956303529
-
Structures of the bacterial ribosome in classical and hybrid states of tRNA binding
-
J.A. Dunkle, L. Wang, M.B. Feldman, A. Pulk, V.B. Chen, G.J. Kapral, J. Noeske, J.S. Richardson, S.C. Blanchard, and J.H. Cate Structures of the bacterial ribosome in classical and hybrid states of tRNA binding Science 332 2011 981 984
-
(2011)
Science
, vol.332
, pp. 981-984
-
-
Dunkle, J.A.1
Wang, L.2
Feldman, M.B.3
Pulk, A.4
Chen, V.B.5
Kapral, G.J.6
Noeske, J.7
Richardson, J.S.8
Blanchard, S.C.9
Cate, J.H.10
-
12
-
-
0024334898
-
Interaction of tRNA with 23S rRNA in the ribosomal A, P, and e sites
-
D. Moazed, and H.F. Noller Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites Cell 57 1989 585 597
-
(1989)
Cell
, vol.57
, pp. 585-597
-
-
Moazed, D.1
Noller, H.F.2
-
13
-
-
0015223518
-
Chemical modification of the transfer RNA and polyuridylic acid binding sites of Escherichia coli 30S ribosomal subunits
-
H.F. Noller, C. Chang, G. Thomas, and J. Aldridge Chemical modification of the transfer RNA and polyuridylic acid binding sites of Escherichia coli 30S ribosomal subunits J. Mol. Biol. 61 1971 669 679
-
(1971)
J. Mol. Biol.
, vol.61
, pp. 669-679
-
-
Noller, H.F.1
Chang, C.2
Thomas, G.3
Aldridge, J.4
-
14
-
-
0022916242
-
Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes
-
D. Moazed, and H.F. Noller Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes Cell 47 1986 985 994
-
(1986)
Cell
, vol.47
, pp. 985-994
-
-
Moazed, D.1
Noller, H.F.2
-
15
-
-
0015424835
-
Functional modification of 16S ribosomal RNA by kethoxal
-
H.F. Noller, and J.B. Chaires Functional modification of 16S ribosomal RNA by kethoxal Proc. Natl. Acad. Sci. U. S. A. 69 1972 3115 3118
-
(1972)
Proc. Natl. Acad. Sci. U. S. A.
, vol.69
, pp. 3115-3118
-
-
Noller, H.F.1
Chaires, J.B.2
-
16
-
-
0037184536
-
Selection of tRNA by the ribosome requires a transition from an open to a closed form
-
J.M. Ogle, F.V. Murphy, M.J. Tarry, and V. Ramakrishnan Selection of tRNA by the ribosome requires a transition from an open to a closed form Cell 111 2002 721 732
-
(2002)
Cell
, vol.111
, pp. 721-732
-
-
Ogle, J.M.1
Murphy, F.V.2
Tarry, M.J.3
Ramakrishnan, V.4
-
17
-
-
1842420639
-
Streptomycin interferes with conformational coupling between codon recognition and GTPase activation on the ribosome
-
K.B. Gromadski, and M.V. Rodnina Streptomycin interferes with conformational coupling between codon recognition and GTPase activation on the ribosome Nat. Struct. Mol. Biol. 11 2004 316 322
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 316-322
-
-
Gromadski, K.B.1
Rodnina, M.V.2
-
18
-
-
84923290649
-
Modulation of decoding fidelity by ribosomal proteins S4 and S5
-
D. Agarwal, D. Kamath, S.T. Gregory, and M. O'Connor Modulation of decoding fidelity by ribosomal proteins S4 and S5 J. Bacteriol. 197 2015 1017 1025
-
(2015)
J. Bacteriol.
, vol.197
, pp. 1017-1025
-
-
Agarwal, D.1
Kamath, D.2
Gregory, S.T.3
O'Connor, M.4
-
19
-
-
18844413446
-
Structural insights into translational fidelity
-
J.M. Ogle, and V. Ramakrishnan Structural insights into translational fidelity Annu. Rev. Biochem. 74 2005 129 177
-
(2005)
Annu. Rev. Biochem.
, vol.74
, pp. 129-177
-
-
Ogle, J.M.1
Ramakrishnan, V.2
-
20
-
-
84923295310
-
Another look at mutations in ribosomal protein S4 lends strong support to the domain closure model
-
K. Fredrick Another look at mutations in ribosomal protein S4 lends strong support to the domain closure model J. Bacteriol. 197 2015 1014 1016
-
(2015)
J. Bacteriol.
, vol.197
, pp. 1014-1016
-
-
Fredrick, K.1
-
21
-
-
20444365142
-
The cryo-EM structure of a translation initiation complex from Escherichia coli
-
G.S. Allen, A. Zavialov, R. Gursky, M. Ehrenberg, and J. Frank The cryo-EM structure of a translation initiation complex from Escherichia coli Cell 121 2005 703 712
-
(2005)
Cell
, vol.121
, pp. 703-712
-
-
Allen, G.S.1
Zavialov, A.2
Gursky, R.3
Ehrenberg, M.4
Frank, J.5
-
22
-
-
84891369006
-
Visualization of two transfer RNAs trapped in transit during elongation factor G-mediated translocation
-
D.J. Ramrath, L. Lancaster, T. Sprink, T. Mielke, J. Loerke, H.F. Noller, and C.M. Spahn Visualization of two transfer RNAs trapped in transit during elongation factor G-mediated translocation Proc. Natl. Acad. Sci. U. S. A. 110 2013 20964 20969
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 20964-20969
-
-
Ramrath, D.J.1
Lancaster, L.2
Sprink, T.3
Mielke, T.4
Loerke, J.5
Noller, H.F.6
Spahn, C.M.7
-
24
-
-
84879663355
-
Elongation factor G bound to the ribosome in an intermediate state of translocation
-
D.S. Tourigny, I.S. Fernandez, A.C. Kelley, and V. Ramakrishnan Elongation factor G bound to the ribosome in an intermediate state of translocation Science 340 2013 1235490
-
(2013)
Science
, vol.340
, pp. 1235490
-
-
Tourigny, D.S.1
Fernandez, I.S.2
Kelley, A.C.3
Ramakrishnan, V.4
-
25
-
-
84879661481
-
Control of ribosomal subunit rotation by elongation factor G
-
A. Pulk, and J.H. Cate Control of ribosomal subunit rotation by elongation factor G Science 340 2013 1235970
-
(2013)
Science
, vol.340
, pp. 1235970
-
-
Pulk, A.1
Cate, J.H.2
-
26
-
-
84907187230
-
How the ribosome hands the A-site tRNA to the P site during EF-G-catalyzed translocation
-
J. Zhou, L. Lancaster, J.P. Donohue, and H.F. Noller How the ribosome hands the A-site tRNA to the P site during EF-G-catalyzed translocation Science 345 2014 1188 1191
-
(2014)
Science
, vol.345
, pp. 1188-1191
-
-
Zhou, J.1
Lancaster, L.2
Donohue, J.P.3
Noller, H.F.4
-
27
-
-
77954650144
-
Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy
-
N. Fischer, A.L. Konevega, W. Wintermeyer, M.V. Rodnina, and H. Stark Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy Nature 466 2010 329 333
-
(2010)
Nature
, vol.466
, pp. 329-333
-
-
Fischer, N.1
Konevega, A.L.2
Wintermeyer, W.3
Rodnina, M.V.4
Stark, H.5
-
28
-
-
78649873931
-
Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites
-
A.H. Ratje, J. Loerke, A. Mikolajka, M. Brunner, P.W. Hildebrand, A.L. Starosta, A. Donhofer, S.R. Connell, P. Fucini, T. Mielke, P.C. Whitford, J.N. Onuchic, Y. Yu, K.Y. Sanbonmatsu, R.K. Hartmann, P.A. Penczek, D.N. Wilson, and C.M. Spahn Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites Nature 468 2010 713 716
-
(2010)
Nature
, vol.468
, pp. 713-716
-
-
Ratje, A.H.1
Loerke, J.2
Mikolajka, A.3
Brunner, M.4
Hildebrand, P.W.5
Starosta, A.L.6
Donhofer, A.7
Connell, S.R.8
Fucini, P.9
Mielke, T.10
Whitford, P.C.11
Onuchic, J.N.12
Yu, Y.13
Sanbonmatsu, K.Y.14
Hartmann, R.K.15
Penczek, P.A.16
Wilson, D.N.17
Spahn, C.M.18
-
29
-
-
0014690239
-
Studies on the formation of transfer ribonucleic acid-ribosome complexes. VI. Oligopeptide synthesis and translocation on ribosomes in the presence and absence of soluble transfer factors
-
S. Pestka Studies on the formation of transfer ribonucleic acid-ribosome complexes. VI. Oligopeptide synthesis and translocation on ribosomes in the presence and absence of soluble transfer factors J. Biol. Chem. 244 1969 1533 1539
-
(1969)
J. Biol. Chem.
, vol.244
, pp. 1533-1539
-
-
Pestka, S.1
-
30
-
-
84886634813
-
Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes
-
L.P. Gavrilova, O.E. Kostiashkina, V.E. Koteliansky, N.M. Rutkevitch, and A.S. Spirin Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes J. Mol. Biol. 101 1976 537 552
-
(1976)
J. Mol. Biol.
, vol.101
, pp. 537-552
-
-
Gavrilova, L.P.1
Kostiashkina, O.E.2
Koteliansky, V.E.3
Rutkevitch, N.M.4
Spirin, A.S.5
-
31
-
-
84871918588
-
Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches
-
S. Ude, J. Lassak, A.L. Starosta, T. Kraxenberger, D.N. Wilson, and K. Jung Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches Science 339 2013 82 85
-
(2013)
Science
, vol.339
, pp. 82-85
-
-
Ude, S.1
Lassak, J.2
Starosta, A.L.3
Kraxenberger, T.4
Wilson, D.N.5
Jung, K.6
-
32
-
-
84871921644
-
EF-P is essential for rapid synthesis of proteins containing consecutive proline residues
-
L.K. Doerfel, I. Wohlgemuth, C. Kothe, F. Peske, H. Urlaub, and M.V. Rodnina EF-P is essential for rapid synthesis of proteins containing consecutive proline residues Science 339 2013 85 88
-
(2013)
Science
, vol.339
, pp. 85-88
-
-
Doerfel, L.K.1
Wohlgemuth, I.2
Kothe, C.3
Peske, F.4
Urlaub, H.5
Rodnina, M.V.6
-
33
-
-
84930382700
-
Ribosome rescue systems in bacteria
-
H. Himeno, N. Nameki, D. Kurita, A. Muto, and T. Abo Ribosome rescue systems in bacteria Biochimie 114 2015 102 112
-
(2015)
Biochimie
, vol.114
, pp. 102-112
-
-
Himeno, H.1
Nameki, N.2
Kurita, D.3
Muto, A.4
Abo, T.5
-
34
-
-
58149374559
-
Crystal structure of a translation termination complex formed with release factor RF2
-
A. Korostelev, H. Asahara, L. Lancaster, M. Laurberg, A. Hirschi, J. Zhu, S. Trakhanov, W.G. Scott, and H.F. Noller Crystal structure of a translation termination complex formed with release factor RF2 Proc. Natl. Acad. Sci. U. S. A. 105 2008 19684 19689
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 19684-19689
-
-
Korostelev, A.1
Asahara, H.2
Lancaster, L.3
Laurberg, M.4
Hirschi, A.5
Zhu, J.6
Trakhanov, S.7
Scott, W.G.8
Noller, H.F.9
-
35
-
-
0030949960
-
Release factor RF3 in E. Coli accelerates the dissociation of release factors RF1 and RF2 from the ribosome in a GTP-dependent manner
-
D.V. Freistroffer, M.Y. Pavlov, J. MacDougall, R.H. Buckingham, and M. Ehrenberg Release factor RF3 in E. coli accelerates the dissociation of release factors RF1 and RF2 from the ribosome in a GTP-dependent manner EMBO J. 16 1997 4126 4133
-
(1997)
EMBO J.
, vol.16
, pp. 4126-4133
-
-
Freistroffer, D.V.1
Pavlov, M.Y.2
MacDougall, J.3
Buckingham, R.H.4
Ehrenberg, M.5
-
36
-
-
84879049657
-
Cryo-EM visualization of the ribosome in termination complex with apo-RF3 and RF1
-
J. Pallesen, Y. Hashem, G. Korkmaz, R.K. Koripella, C. Huang, M. Ehrenberg, S. Sanyal, and J. Frank Cryo-EM visualization of the ribosome in termination complex with apo-RF3 and RF1 Elife 2 2013 e00411
-
(2013)
Elife
, vol.2
-
-
Pallesen, J.1
Hashem, Y.2
Korkmaz, G.3
Koripella, R.K.4
Huang, C.5
Ehrenberg, M.6
Sanyal, S.7
Frank, J.8
-
37
-
-
20444430084
-
Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies
-
N. Gao, A.V. Zavialov, W. Li, J. Sengupta, M. Valle, R.P. Gursky, M. Ehrenberg, and J. Frank Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies Mol. Cell 18 2005 663 674
-
(2005)
Mol. Cell
, vol.18
, pp. 663-674
-
-
Gao, N.1
Zavialov, A.V.2
Li, W.3
Sengupta, J.4
Valle, M.5
Gursky, R.P.6
Ehrenberg, M.7
Frank, J.8
-
38
-
-
18944364304
-
Sequence of steps in ribosome recycling as defined by kinetic analysis
-
F. Peske, M.V. Rodnina, and W. Wintermeyer Sequence of steps in ribosome recycling as defined by kinetic analysis Mol. Cell 18 2005 403 412
-
(2005)
Mol. Cell
, vol.18
, pp. 403-412
-
-
Peske, F.1
Rodnina, M.V.2
Wintermeyer, W.3
-
39
-
-
0000815931
-
Ribonucleoprotein particles from Escherichia coli
-
A. Tissieres, and J.D. Watson Ribonucleoprotein particles from Escherichia coli Nature 182 1958 778 780
-
(1958)
Nature
, vol.182
, pp. 778-780
-
-
Tissieres, A.1
Watson, J.D.2
-
40
-
-
0026045381
-
Three-dimensional reconstruction of the 70S Escherichia coli ribosome in ice: The distribution of ribosomal RNA
-
J. Frank, P. Penczek, R. Grassucci, and S. Srivastava Three-dimensional reconstruction of the 70S Escherichia coli ribosome in ice: the distribution of ribosomal RNA J. Cell Biol. 115 1991 597 605
-
(1991)
J. Cell Biol.
, vol.115
, pp. 597-605
-
-
Frank, J.1
Penczek, P.2
Grassucci, R.3
Srivastava, S.4
-
41
-
-
0029402180
-
A model of the translational apparatus based on a three-dimensional reconstruction of the Escherichia coli ribosome
-
J. Frank, A. Verschoor, Y. Li, J. Zhu, R.K. Lata, M. Radermacher, P. Penczek, R. Grassucci, R.K. Agrawal, and S. Srivastava A model of the translational apparatus based on a three-dimensional reconstruction of the Escherichia coli ribosome Biochem. Cell Biol. 73 1995 757 765
-
(1995)
Biochem. Cell Biol.
, vol.73
, pp. 757-765
-
-
Frank, J.1
Verschoor, A.2
Li, Y.3
Zhu, J.4
Lata, R.K.5
Radermacher, M.6
Penczek, P.7
Grassucci, R.8
Agrawal, R.K.9
Srivastava, S.10
-
42
-
-
0035805213
-
Crystal structure of the ribosome at 5.5 A resolution
-
M.M. Yusupov, G.Z. Yusupova, A. Baucom, K. Lieberman, T.N. Earnest, J.H. Cate, and H.F. Noller Crystal structure of the ribosome at 5.5 A resolution Science 292 2001 883 896
-
(2001)
Science
, vol.292
, pp. 883-896
-
-
Yusupov, M.M.1
Yusupova, G.Z.2
Baucom, A.3
Lieberman, K.4
Earnest, T.N.5
Cate, J.H.6
Noller, H.F.7
-
43
-
-
77950366458
-
Dynamics of the base of ribosomal A-site finger revealed by molecular dynamics simulations and cryo-EM
-
K. Reblova, F. Razga, W. Li, H. Gao, J. Frank, and J. Sponer Dynamics of the base of ribosomal A-site finger revealed by molecular dynamics simulations and cryo-EM Nucleic Acids Res. 38 2010 1325 1340
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 1325-1340
-
-
Reblova, K.1
Razga, F.2
Li, W.3
Gao, H.4
Frank, J.5
Sponer, J.6
-
44
-
-
2942571539
-
The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
J.J. Cannone, S. Subramanian, M.N. Schnare, J.R. Collett, L.M. D'Souza, Y. Du, B. Feng, N. Lin, L.V. Madabusi, K.M. Muller, N. Pande, Z. Shang, N. Yu, and R.R. Gutell The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs BMC Bioinf. 3 2002 2
-
(2002)
BMC Bioinf.
, vol.3
, pp. 2
-
-
Cannone, J.J.1
Subramanian, S.2
Schnare, M.N.3
Collett, J.R.4
D'Souza, L.M.5
Du, Y.6
Feng, B.7
Lin, N.8
Madabusi, L.V.9
Muller, K.M.10
Pande, N.11
Shang, Z.12
Yu, N.13
Gutell, R.R.14
-
46
-
-
33845958586
-
The A-site finger in 23 S rRNA acts as a functional attenuator for translocation
-
T. Komoda, N.S. Sato, S.S. Phelps, N. Namba, S. Joseph, and T. Suzuki The A-site finger in 23 S rRNA acts as a functional attenuator for translocation J. Biol. Chem. 281 2006 32303 32309
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 32303-32309
-
-
Komoda, T.1
Sato, N.S.2
Phelps, S.S.3
Namba, N.4
Joseph, S.5
Suzuki, T.6
-
47
-
-
18144409413
-
Multiple effects of S13 in modulating the strength of intersubunit interactions in the ribosome during translation
-
A.R. Cukras, and R. Green Multiple effects of S13 in modulating the strength of intersubunit interactions in the ribosome during translation J. Mol. Biol. 349 2005 47 59
-
(2005)
J. Mol. Biol.
, vol.349
, pp. 47-59
-
-
Cukras, A.R.1
Green, R.2
-
48
-
-
0042173407
-
Ribosomal proteins S12 and S13 function as control elements for translocation of the mRNA:tRNA complex
-
A.R. Cukras, D.R. Southworth, J.L. Brunelle, G.M. Culver, and R. Green Ribosomal proteins S12 and S13 function as control elements for translocation of the mRNA:tRNA complex Mol. Cell 12 2003 321 328
-
(2003)
Mol. Cell
, vol.12
, pp. 321-328
-
-
Cukras, A.R.1
Southworth, D.R.2
Brunelle, J.L.3
Culver, G.M.4
Green, R.5
-
49
-
-
0026529433
-
Identification of intermolecular RNA cross-links at the subunit interface of the Escherichia coli ribosome
-
P. Mitchell, M. Osswald, and R. Brimacombe Identification of intermolecular RNA cross-links at the subunit interface of the Escherichia coli ribosome Biochemistry 31 1992 3004 3011
-
(1992)
Biochemistry
, vol.31
, pp. 3004-3011
-
-
Mitchell, P.1
Osswald, M.2
Brimacombe, R.3
-
50
-
-
84898964106
-
Structure-based energetics of mRNA decoding on the ribosome
-
P. Satpati, J. Sund, and J. Aqvist Structure-based energetics of mRNA decoding on the ribosome Biochemistry 53 2014 1714 1722
-
(2014)
Biochemistry
, vol.53
, pp. 1714-1722
-
-
Satpati, P.1
Sund, J.2
Aqvist, J.3
-
51
-
-
70350074392
-
Helix 69 in 23S rRNA modulates decoding by wild type and suppressor tRNAs
-
M. O'Connor Helix 69 in 23S rRNA modulates decoding by wild type and suppressor tRNAs Mol. Gen. Genomics. 282 2009 371 380
-
(2009)
Mol. Gen. Genomics.
, vol.282
, pp. 371-380
-
-
O'Connor, M.1
-
52
-
-
0029617892
-
The involvement of two distinct regions of 23 S ribosomal RNA in tRNA selection
-
M. O'Connor, and A.E. Dahlberg The involvement of two distinct regions of 23 S ribosomal RNA in tRNA selection J. Mol. Biol. 254 1995 838 847
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 838-847
-
-
O'Connor, M.1
Dahlberg, A.E.2
-
53
-
-
79960396249
-
Helix 69 is key for uniformity during substrate selection on the ribosome
-
R.F. Ortiz-Meoz, and R. Green Helix 69 is key for uniformity during substrate selection on the ribosome J. Biol. Chem. 286 2011 25604 25610
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 25604-25610
-
-
Ortiz-Meoz, R.F.1
Green, R.2
-
54
-
-
33745205638
-
Conserved loop sequence of helix 69 in Escherichia coli 23 S rRNA is involved in A-site tRNA binding and translational fidelity
-
N. Hirabayashi, N.S. Sato, and T. Suzuki Conserved loop sequence of helix 69 in Escherichia coli 23 S rRNA is involved in A-site tRNA binding and translational fidelity J. Biol. Chem. 281 2006 17203 17211
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 17203-17211
-
-
Hirabayashi, N.1
Sato, N.S.2
Suzuki, T.3
-
55
-
-
33749354360
-
Structure of the 70S ribosome complexed with mRNA and tRNA
-
M. Selmer, C.M. Dunham, F.V.t. Murphy, A. Weixlbaumer, S. Petry, A.C. Kelley, J.R. Weir, and V. Ramakrishnan Structure of the 70S ribosome complexed with mRNA and tRNA Science 313 2006 1935 1942
-
(2006)
Science
, vol.313
, pp. 1935-1942
-
-
Selmer, M.1
Dunham, C.M.2
Murphy, F.V.T.3
Weixlbaumer, A.4
Petry, S.5
Kelley, A.C.6
Weir, J.R.7
Ramakrishnan, V.8
-
56
-
-
58149094345
-
Ribosomal intersubunit bridge B2a is involved in factor-dependent translation initiation and translational processivity
-
K. Kipper, C. Hetenyi, S. Sild, J. Remme, and A. Liiv Ribosomal intersubunit bridge B2a is involved in factor-dependent translation initiation and translational processivity J. Mol. Biol. 385 2009 405 422
-
(2009)
J. Mol. Biol.
, vol.385
, pp. 405-422
-
-
Kipper, K.1
Hetenyi, C.2
Sild, S.3
Remme, J.4
Liiv, A.5
-
57
-
-
37349128219
-
RRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity
-
X.H. Liang, Q. Liu, and M.J. Fournier rRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity Mol. Cell 28 2007 965 977
-
(2007)
Mol. Cell
, vol.28
, pp. 965-977
-
-
Liang, X.H.1
Liu, Q.2
Fournier, M.J.3
-
58
-
-
17844367581
-
Nonbridging phosphate oxygens in 16S rRNA important for 30S subunit assembly and association with the 50S ribosomal subunit
-
S. Ghosh, and S. Joseph Nonbridging phosphate oxygens in 16S rRNA important for 30S subunit assembly and association with the 50S ribosomal subunit RNA 11 2005 657 667
-
(2005)
RNA
, vol.11
, pp. 657-667
-
-
Ghosh, S.1
Joseph, S.2
-
59
-
-
0036077583
-
Functional studies of the 900 tetraloop capping helix 27 of 16S ribosomal RNA
-
F. Belanger, M. Leger, A.A. Saraiya, P.R. Cunningham, and L. Brakier-Gingras Functional studies of the 900 tetraloop capping helix 27 of 16S ribosomal RNA J. Mol. Biol. 320 2002 979 989
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 979-989
-
-
Belanger, F.1
Leger, M.2
Saraiya, A.A.3
Cunningham, P.R.4
Brakier-Gingras, L.5
-
60
-
-
1942489762
-
Study of the functional interaction of the 900 tetraloop of 16S ribosomal RNA with helix 24 within the bacterial ribosome
-
F. Belanger, M.G. Gagnon, S.V. Steinberg, P.R. Cunningham, and L. Brakier-Gingras Study of the functional interaction of the 900 tetraloop of 16S ribosomal RNA with helix 24 within the bacterial ribosome J. Mol. Biol. 338 2004 683 693
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 683-693
-
-
Belanger, F.1
Gagnon, M.G.2
Steinberg, S.V.3
Cunningham, P.R.4
Brakier-Gingras, L.5
-
61
-
-
84888426669
-
The central role of protein S12 in organizing the structure of the decoding site of the ribosome
-
H. Demirci, L. Wang, F.V.t. Murphy, E.L. Murphy, J.F. Carr, S.C. Blanchard, G. Jogl, A.E. Dahlberg, and S.T. Gregory The central role of protein S12 in organizing the structure of the decoding site of the ribosome RNA 19 2013 1791 1801
-
(2013)
RNA
, vol.19
, pp. 1791-1801
-
-
Demirci, H.1
Wang, L.2
Murphy, F.V.T.3
Murphy, E.L.4
Carr, J.F.5
Blanchard, S.C.6
Jogl, G.7
Dahlberg, A.E.8
Gregory, S.T.9
-
62
-
-
0030806152
-
A conformational switch in Escherichia coli 16S ribosomal RNA during decoding of messenger RNA
-
J.S. Lodmell, and A.E. Dahlberg A conformational switch in Escherichia coli 16S ribosomal RNA during decoding of messenger RNA Science 277 1997 1262 1267
-
(1997)
Science
, vol.277
, pp. 1262-1267
-
-
Lodmell, J.S.1
Dahlberg, A.E.2
-
63
-
-
0033862288
-
Mutations in helix 27 of the yeast Saccharomyces cerevisiae 18S rRNA affect the function of the decoding center of the ribosome
-
I.V. Velichutina, J. Dresios, J.Y. Hong, C. Li, A. Mankin, D. Synetos, and S.W. Liebman Mutations in helix 27 of the yeast Saccharomyces cerevisiae 18S rRNA affect the function of the decoding center of the ribosome RNA 6 2000 1174 1184
-
(2000)
RNA
, vol.6
, pp. 1174-1184
-
-
Velichutina, I.V.1
Dresios, J.2
Hong, J.Y.3
Li, C.4
Mankin, A.5
Synetos, D.6
Liebman, S.W.7
-
64
-
-
77957320587
-
Missense suppressor mutations in 16S rRNA reveal the importance of helices h8 and h14 in aminoacyl-tRNA selection
-
S.P. McClory, J.M. Leisring, D. Qin, and K. Fredrick Missense suppressor mutations in 16S rRNA reveal the importance of helices h8 and h14 in aminoacyl-tRNA selection RNA 16 2010 1925 1934
-
(2010)
RNA
, vol.16
, pp. 1925-1934
-
-
McClory, S.P.1
Leisring, J.M.2
Qin, D.3
Fredrick, K.4
-
65
-
-
33646193946
-
Identification of nucleotides in E. Coli 16S rRNA essential for ribosome subunit association
-
A. Pulk, U. Maivali, and J. Remme Identification of nucleotides in E. coli 16S rRNA essential for ribosome subunit association RNA 12 2006 790 796
-
(2006)
RNA
, vol.12
, pp. 790-796
-
-
Pulk, A.1
Maivali, U.2
Remme, J.3
-
66
-
-
79955632736
-
Mutations in the intersubunit bridge regions of 16S rRNA affect decoding and subunit-subunit interactions on the 70S ribosome
-
Q. Sun, A. Vila-Sanjurjo, and M. O'Connor Mutations in the intersubunit bridge regions of 16S rRNA affect decoding and subunit-subunit interactions on the 70S ribosome Nucleic Acids Res. 39 2011 3321 3330
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 3321-3330
-
-
Sun, Q.1
Vila-Sanjurjo, A.2
O'Connor, M.3
-
67
-
-
33749565152
-
Mutations in the intersubunit bridge regions of 23 S rRNA
-
A. Liiv, and M. O'Connor Mutations in the intersubunit bridge regions of 23 S rRNA J. Biol. Chem. 281 2006 29850 29862
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 29850-29862
-
-
Liiv, A.1
O'Connor, M.2
-
68
-
-
0032849011
-
Identification of an RNA-protein bridge spanning the ribosomal subunit interface
-
G.M. Culver, J.H. Cate, G.Z. Yusupova, M.M. Yusupov, and H.F. Noller Identification of an RNA-protein bridge spanning the ribosomal subunit interface Science 285 1999 2133 2136
-
(1999)
Science
, vol.285
, pp. 2133-2136
-
-
Culver, G.M.1
Cate, J.H.2
Yusupova, G.Z.3
Yusupov, M.M.4
Noller, H.F.5
-
69
-
-
0035949573
-
Identification of molecular interactions between P-site tRNA and the ribosome essential for translocation
-
J.S. Feinberg, and S. Joseph Identification of molecular interactions between P-site tRNA and the ribosome essential for translocation Proc. Natl. Acad. Sci. U. S. A. 98 2001 11120 11125
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, pp. 11120-11125
-
-
Feinberg, J.S.1
Joseph, S.2
-
70
-
-
33747878071
-
Decoding errors and the involvement of the E-site
-
K.H. Nierhaus Decoding errors and the involvement of the E-site Biochimie 88 2006 1013 1019
-
(2006)
Biochimie
, vol.88
, pp. 1013-1019
-
-
Nierhaus, K.H.1
-
71
-
-
80054769463
-
Allosteric vs. Spontaneous exit-site (E-site) tRNA dissociation early in protein synthesis
-
C. Chen, B. Stevens, J. Kaur, Z. Smilansky, B.S. Cooperman, and Y.E. Goldman Allosteric vs. spontaneous exit-site (E-site) tRNA dissociation early in protein synthesis Proc. Natl. Acad. Sci. U. S. A. 108 2011 16980 16985
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 16980-16985
-
-
Chen, C.1
Stevens, B.2
Kaur, J.3
Smilansky, Z.4
Cooperman, B.S.5
Goldman, Y.E.6
-
72
-
-
34548768192
-
The three transfer RNAs occupying the A, P and e sites on the ribosome are involved in viral programmed - 1 ribosomal frameshift
-
M. Leger, D. Dulude, S.V. Steinberg, and L. Brakier-Gingras The three transfer RNAs occupying the A, P and E sites on the ribosome are involved in viral programmed - 1 ribosomal frameshift Nucleic Acids Res. 35 2007 5581 5592
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 5581-5592
-
-
Leger, M.1
Dulude, D.2
Steinberg, S.V.3
Brakier-Gingras, L.4
-
73
-
-
58249104517
-
A role for the 30S subunit e site in maintenance of the translational reading frame
-
A. Devaraj, S. Shoji, E.D. Holbrook, and K. Fredrick A role for the 30S subunit E site in maintenance of the translational reading frame RNA 15 2009 255 265
-
(2009)
RNA
, vol.15
, pp. 255-265
-
-
Devaraj, A.1
Shoji, S.2
Holbrook, E.D.3
Fredrick, K.4
-
74
-
-
84896540630
-
Distinct functional classes of ram mutations in 16S rRNA
-
S.P. McClory, A. Devaraj, and K. Fredrick Distinct functional classes of ram mutations in 16S rRNA RNA 20 2014 496 504
-
(2014)
RNA
, vol.20
, pp. 496-504
-
-
McClory, S.P.1
Devaraj, A.2
Fredrick, K.3
-
75
-
-
84878964344
-
Reorganization of an intersubunit bridge induced by disparate 16S ribosomal ambiguity mutations mimics an EF-Tu-bound state
-
C.E. Fagan, J.A. Dunkle, T. Maehigashi, M.N. Dang, A. Devaraj, S.J. Miles, D. Qin, K. Fredrick, and C.M. Dunham Reorganization of an intersubunit bridge induced by disparate 16S ribosomal ambiguity mutations mimics an EF-Tu-bound state Proc. Natl. Acad. Sci. U. S. A. 110 2013 9716 9721
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 9716-9721
-
-
Fagan, C.E.1
Dunkle, J.A.2
Maehigashi, T.3
Dang, M.N.4
Devaraj, A.5
Miles, S.J.6
Qin, D.7
Fredrick, K.8
Dunham, C.M.9
-
76
-
-
84866665714
-
Functional replacement of two highly conserved tetraloops in the bacterial ribosome
-
B. Sahu, P.K. Khade, and S. Joseph Functional replacement of two highly conserved tetraloops in the bacterial ribosome Biochemistry 51 2012 7618 7626
-
(2012)
Biochemistry
, vol.51
, pp. 7618-7626
-
-
Sahu, B.1
Khade, P.K.2
Joseph, S.3
-
77
-
-
33846317719
-
Compensatory evolution reveals functional interactions between ribosomal proteins S12, L14 and L19
-
S. Maisnier-Patin, W. Paulander, A. Pennhag, and D.I. Andersson Compensatory evolution reveals functional interactions between ribosomal proteins S12, L14 and L19 J. Mol. Biol. 366 2007 207 215
-
(2007)
J. Mol. Biol.
, vol.366
, pp. 207-215
-
-
Maisnier-Patin, S.1
Paulander, W.2
Pennhag, A.3
Andersson, D.I.4
-
78
-
-
27644491082
-
Structures of the bacterial ribosome at 3.5 Å resolution
-
B.S. Schuwirth, M.A. Borovinskaya, C.W. Hau, W. Zhang, A. Vila-Sanjurjo, J.M. Holton, and J.H. Cate Structures of the bacterial ribosome at 3.5 Å resolution Science 310 2005 827 834
-
(2005)
Science
, vol.310
, pp. 827-834
-
-
Schuwirth, B.S.1
Borovinskaya, M.A.2
Hau, C.W.3
Zhang, W.4
Vila-Sanjurjo, A.5
Holton, J.M.6
Cate, J.H.7
-
79
-
-
23644434688
-
Measurement of internal movements within the 30S ribosomal subunit using Forster resonance energy transfer
-
R. Hickerson, Z.K. Majumdar, A. Baucom, R.M. Clegg, and H.F. Noller Measurement of internal movements within the 30S ribosomal subunit using Forster resonance energy transfer J. Mol. Biol. 354 2005 459 472
-
(2005)
J. Mol. Biol.
, vol.354
, pp. 459-472
-
-
Hickerson, R.1
Majumdar, Z.K.2
Baucom, A.3
Clegg, R.M.4
Noller, H.F.5
-
80
-
-
0035977093
-
High resolution structure of the large ribosomal subunit from a mesophilic eubacterium
-
J. Harms, F. Schluenzen, R. Zarivach, A. Bashan, S. Gat, I. Agmon, H. Bartels, F. Franceschi, and A. Yonath High resolution structure of the large ribosomal subunit from a mesophilic eubacterium Cell 107 2001 679 688
-
(2001)
Cell
, vol.107
, pp. 679-688
-
-
Harms, J.1
Schluenzen, F.2
Zarivach, R.3
Bashan, A.4
Gat, S.5
Agmon, I.6
Bartels, H.7
Franceschi, F.8
Yonath, A.9
-
81
-
-
0029051704
-
Specific protection of 16 S rRNA by translational initiation factors
-
D. Moazed, R.R. Samaha, C. Gualerzi, and H.F. Noller Specific protection of 16 S rRNA by translational initiation factors J. Mol. Biol. 248 1995 207 210
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 207-210
-
-
Moazed, D.1
Samaha, R.R.2
Gualerzi, C.3
Noller, H.F.4
-
82
-
-
0035910393
-
Crystal structure of an initiation factor bound to the 30S ribosomal subunit
-
A.P. Carter, W.M. Clemons Jr., D.E. Brodersen, R.J. Morgan-Warren, T. Hartsch, B.T. Wimberly, and V. Ramakrishnan Crystal structure of an initiation factor bound to the 30S ribosomal subunit Science 291 2001 498 501
-
(2001)
Science
, vol.291
, pp. 498-501
-
-
Carter, A.P.1
Clemons, W.M.2
Brodersen, D.E.3
Morgan-Warren, R.J.4
Hartsch, T.5
Wimberly, B.T.6
Ramakrishnan, V.7
-
83
-
-
0034759978
-
Interaction of translation initiation factor 3 with the 30S ribosomal subunit
-
A. Dallas, and H.F. Noller Interaction of translation initiation factor 3 with the 30S ribosomal subunit Mol. Cell 8 2001 855 864
-
(2001)
Mol. Cell
, vol.8
, pp. 855-864
-
-
Dallas, A.1
Noller, H.F.2
-
84
-
-
79960917084
-
The cryo-EM structure of a complete 30S translation initiation complex from Escherichia coli
-
P. Julian, P. Milon, X. Agirrezabala, G. Lasso, D. Gil, M.V. Rodnina, and M. Valle The cryo-EM structure of a complete 30S translation initiation complex from Escherichia coli PLoS Biol. 9 2011 e1001095
-
(2011)
PLoS Biol.
, vol.9
-
-
Julian, P.1
Milon, P.2
Agirrezabala, X.3
Lasso, G.4
Gil, D.5
Rodnina, M.V.6
Valle, M.7
-
85
-
-
33745763700
-
How initiation factors tune the rate of initiation of protein synthesis in bacteria
-
A. Antoun, M.Y. Pavlov, M. Lovmar, and M. Ehrenberg How initiation factors tune the rate of initiation of protein synthesis in bacteria EMBO J. 25 2006 2539 2550
-
(2006)
EMBO J.
, vol.25
, pp. 2539-2550
-
-
Antoun, A.1
Pavlov, M.Y.2
Lovmar, M.3
Ehrenberg, M.4
-
87
-
-
84863116168
-
Role of helix 44 of 16S rRNA in the fidelity of translation initiation
-
D. Qin, Q. Liu, A. Devaraj, and K. Fredrick Role of helix 44 of 16S rRNA in the fidelity of translation initiation RNA 18 2012 485 495
-
(2012)
RNA
, vol.18
, pp. 485-495
-
-
Qin, D.1
Liu, Q.2
Devaraj, A.3
Fredrick, K.4
-
88
-
-
60649100084
-
Control of translation initiation involves a factor-induced rearrangement of helix 44 of 16S ribosomal RNA
-
D. Qin, and K. Fredrick Control of translation initiation involves a factor-induced rearrangement of helix 44 of 16S ribosomal RNA Mol. Microbiol. 71 2009 1239 1249
-
(2009)
Mol. Microbiol.
, vol.71
, pp. 1239-1249
-
-
Qin, D.1
Fredrick, K.2
-
89
-
-
33745943856
-
How initiation factors maximize the accuracy of tRNA selection in initiation of bacterial protein synthesis
-
A. Antoun, M.Y. Pavlov, M. Lovmar, and M. Ehrenberg How initiation factors maximize the accuracy of tRNA selection in initiation of bacterial protein synthesis Mol. Cell 23 2006 183 193
-
(2006)
Mol. Cell
, vol.23
, pp. 183-193
-
-
Antoun, A.1
Pavlov, M.Y.2
Lovmar, M.3
Ehrenberg, M.4
-
90
-
-
34748909381
-
The translational fidelity function of IF3 during transition from the 30S initiation complex to the 70 S initiation complex
-
C. Grigoriadou, S. Marzi, D. Pan, C.O. Gualerzi, and B.S. Cooperman The translational fidelity function of IF3 during transition from the 30S initiation complex to the 70 S initiation complex J. Mol. Biol. 373 2007 551 561
-
(2007)
J. Mol. Biol.
, vol.373
, pp. 551-561
-
-
Grigoriadou, C.1
Marzi, S.2
Pan, D.3
Gualerzi, C.O.4
Cooperman, B.S.5
-
91
-
-
84932113188
-
Translation initiation factor 3 regulates switching between different modes of ribosomal subunit joining
-
D.D. MacDougall, and R.L. Gonzalez Jr. Translation initiation factor 3 regulates switching between different modes of ribosomal subunit joining J. Mol. Biol. 427 2015 1801 1818
-
(2015)
J. Mol. Biol.
, vol.427
, pp. 1801-1818
-
-
MacDougall, D.D.1
Gonzalez, R.L.2
-
92
-
-
85027924447
-
Conformational selection of translation initiation factor 3 signals proper substrate selection
-
M.M. Elvekrog, and R.L. Gonzalez Jr. Conformational selection of translation initiation factor 3 signals proper substrate selection Nat. Struct. Mol. Biol. 20 2013 628 633
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 628-633
-
-
Elvekrog, M.M.1
Gonzalez, R.L.2
-
93
-
-
84941696051
-
Roles of helix H69 of 23S rRNA in translation initiation
-
Q. Liu, and K. Fredrick Roles of helix H69 of 23S rRNA in translation initiation Proc. Natl. Acad. Sci. U. S. A. 112 2015 11559 11564
-
(2015)
Proc. Natl. Acad. Sci. U. S. A.
, vol.112
, pp. 11559-11564
-
-
Liu, Q.1
Fredrick, K.2
-
94
-
-
78751632668
-
Activation of initiation factor 2 by ligands and mutations for rapid docking of ribosomal subunits
-
M.Y. Pavlov, A. Zorzet, D.I. Andersson, and M. Ehrenberg Activation of initiation factor 2 by ligands and mutations for rapid docking of ribosomal subunits EMBO J. 30 2011 289 301
-
(2011)
EMBO J.
, vol.30
, pp. 289-301
-
-
Pavlov, M.Y.1
Zorzet, A.2
Andersson, D.I.3
Ehrenberg, M.4
-
95
-
-
84861859514
-
Real-time assembly landscape of bacterial 30S translation initiation complex
-
P. Milon, C. Maracci, L. Filonava, C.O. Gualerzi, and M.V. Rodnina Real-time assembly landscape of bacterial 30S translation initiation complex Nat. Struct. Mol. Biol. 19 2012 609 615
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 609-615
-
-
Milon, P.1
Maracci, C.2
Filonava, L.3
Gualerzi, C.O.4
Rodnina, M.V.5
-
96
-
-
33645965566
-
Unfolding of mRNA secondary structure by the bacterial translation initiation complex
-
S.M. Studer, and S. Joseph Unfolding of mRNA secondary structure by the bacterial translation initiation complex Mol. Cell 22 2006 105 115
-
(2006)
Mol. Cell
, vol.22
, pp. 105-115
-
-
Studer, S.M.1
Joseph, S.2
-
97
-
-
13844280352
-
A time-resolved investigation of ribosomal subunit association
-
S.P. Hennelly, A. Antoun, M. Ehrenberg, C.O. Gualerzi, W. Knight, J.S. Lodmell, and W.E. Hill A time-resolved investigation of ribosomal subunit association J. Mol. Biol. 346 2005 1243 1258
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 1243-1258
-
-
Hennelly, S.P.1
Antoun, A.2
Ehrenberg, M.3
Gualerzi, C.O.4
Knight, W.5
Lodmell, J.S.6
Hill, W.E.7
-
98
-
-
84903973914
-
Initial bridges between two ribosomal subunits are formed within 9.4 milliseconds, as studied by time-resolved cryo-EM
-
T.R. Shaikh, A.S. Yassin, Z. Lu, D. Barnard, X. Meng, T.M. Lu, T. Wagenknecht, and R.K. Agrawal Initial bridges between two ribosomal subunits are formed within 9.4 milliseconds, as studied by time-resolved cryo-EM Proc. Natl. Acad. Sci. U. S. A. 111 2014 9822 9827
-
(2014)
Proc. Natl. Acad. Sci. U. S. A.
, vol.111
, pp. 9822-9827
-
-
Shaikh, T.R.1
Yassin, A.S.2
Lu, Z.3
Barnard, D.4
Meng, X.5
Lu, T.M.6
Wagenknecht, T.7
Agrawal, R.K.8
-
99
-
-
84930273910
-
Structural dynamics of ribosome subunit association studied by mixing-spraying time-resolved cryogenic electron microscopy
-
B. Chen, S. Kaledhonkar, M. Sun, B. Shen, Z. Lu, D. Barnard, T.M. Lu, R.L. Gonzalez Jr., and J. Frank Structural dynamics of ribosome subunit association studied by mixing-spraying time-resolved cryogenic electron microscopy Structures 23 2015 1097 1105
-
(2015)
Structures
, vol.23
, pp. 1097-1105
-
-
Chen, B.1
Kaledhonkar, S.2
Sun, M.3
Shen, B.4
Lu, Z.5
Barnard, D.6
Lu, T.M.7
Gonzalez, R.L.8
Frank, J.9
-
100
-
-
0037963475
-
Locking and unlocking of ribosomal motions
-
M. Valle, A. Zavialov, J. Sengupta, U. Rawat, M. Ehrenberg, and J. Frank Locking and unlocking of ribosomal motions Cell 114 2003 123 134
-
(2003)
Cell
, vol.114
, pp. 123-134
-
-
Valle, M.1
Zavialov, A.2
Sengupta, J.3
Rawat, U.4
Ehrenberg, M.5
Frank, J.6
-
101
-
-
70349470607
-
Allosteric collaboration between elongation factor G and the ribosomal L1 stalk directs tRNA movements during translation
-
J. Fei, J.E. Bronson, J.M. Hofman, R.L. Srinivas, C.H. Wiggins, and R.L. Gonzalez Jr. Allosteric collaboration between elongation factor G and the ribosomal L1 stalk directs tRNA movements during translation Proc. Natl. Acad. Sci. U. S. A. 106 2009 15702 15707
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 15702-15707
-
-
Fei, J.1
Bronson, J.E.2
Hofman, J.M.3
Srinivas, R.L.4
Wiggins, C.H.5
Gonzalez, R.L.6
-
102
-
-
68249151083
-
Translation factors direct intrinsic ribosome dynamics during translation termination and ribosome recycling
-
S.H. Sternberg, J. Fei, N. Prywes, K.A. McGrath, and R.L. Gonzalez Jr. Translation factors direct intrinsic ribosome dynamics during translation termination and ribosome recycling Nat. Struct. Mol. Biol. 16 2009 861 868
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 861-868
-
-
Sternberg, S.H.1
Fei, J.2
Prywes, N.3
McGrath, K.A.4
Gonzalez, R.L.5
-
103
-
-
84859432765
-
Structural insights into initial and intermediate steps of the ribosome-recycling process
-
T. Yokoyama, T.R. Shaikh, N. Iwakura, H. Kaji, A. Kaji, and R.K. Agrawal Structural insights into initial and intermediate steps of the ribosome-recycling process EMBO J. 31 2012 1836 1846
-
(2012)
EMBO J.
, vol.31
, pp. 1836-1846
-
-
Yokoyama, T.1
Shaikh, T.R.2
Iwakura, N.3
Kaji, H.4
Kaji, A.5
Agrawal, R.K.6
-
104
-
-
34547696927
-
Structural basis for aminoglycoside inhibition of bacterial ribosome recycling
-
M.A. Borovinskaya, R.D. Pai, W. Zhang, B.S. Schuwirth, J.M. Holton, G. Hirokawa, H. Kaji, A. Kaji, and J.H. Cate Structural basis for aminoglycoside inhibition of bacterial ribosome recycling Nat. Struct. Mol. Biol. 14 2007 727 732
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 727-732
-
-
Borovinskaya, M.A.1
Pai, R.D.2
Zhang, W.3
Schuwirth, B.S.4
Holton, J.M.5
Hirokawa, G.6
Kaji, H.7
Kaji, A.8
Cate, J.H.9
-
105
-
-
33748527208
-
Deletion of a conserved, central ribosomal intersubunit RNA bridge
-
I.K. Ali, L. Lancaster, J. Feinberg, S. Joseph, and H.F. Noller Deletion of a conserved, central ribosomal intersubunit RNA bridge Mol. Cell 23 2006 865 874
-
(2006)
Mol. Cell
, vol.23
, pp. 865-874
-
-
Ali, I.K.1
Lancaster, L.2
Feinberg, J.3
Joseph, S.4
Noller, H.F.5
-
106
-
-
65249164177
-
Distinct functions of elongation factor G in ribosome recycling and translocation
-
A. Savelsbergh, M.V. Rodnina, and W. Wintermeyer Distinct functions of elongation factor G in ribosome recycling and translocation RNA 15 2009 772 780
-
(2009)
RNA
, vol.15
, pp. 772-780
-
-
Savelsbergh, A.1
Rodnina, M.V.2
Wintermeyer, W.3
-
107
-
-
34447331273
-
Progression of the ribosome recycling factor through the ribosome dissociates the two ribosomal subunits
-
C. Barat, P.P. Datta, V.S. Raj, M.R. Sharma, H. Kaji, A. Kaji, and R.K. Agrawal Progression of the ribosome recycling factor through the ribosome dissociates the two ribosomal subunits Mol. Cell 27 2007 250 261
-
(2007)
Mol. Cell
, vol.27
, pp. 250-261
-
-
Barat, C.1
Datta, P.P.2
Raj, V.S.3
Sharma, M.R.4
Kaji, H.5
Kaji, A.6
Agrawal, R.K.7
-
108
-
-
0034691576
-
A ratchet-like inter-subunit reorganization of the ribosome during translocation
-
J. Frank, and R.K. Agrawal A ratchet-like inter-subunit reorganization of the ribosome during translocation Nature 406 2000 318 322
-
(2000)
Nature
, vol.406
, pp. 318-322
-
-
Frank, J.1
Agrawal, R.K.2
-
109
-
-
84861846036
-
The DARC site: A database of aligned ribosomal complexes
-
A. Jarasch, P. Dziuk, T. Becker, J.P. Armache, A. Hauser, D.N. Wilson, and R. Beckmann The DARC site: a database of aligned ribosomal complexes Nucleic Acids Res. 40 2012 D495 D500
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D495-D500
-
-
Jarasch, A.1
Dziuk, P.2
Becker, T.3
Armache, J.P.4
Hauser, A.5
Wilson, D.N.6
Beckmann, R.7
-
111
-
-
33847051154
-
Identification of two distinct hybrid state intermediates on the ribosome
-
J.B. Munro, R.B. Altman, N. O'Connor, and S.C. Blanchard Identification of two distinct hybrid state intermediates on the ribosome Mol. Cell 25 2007 505 517
-
(2007)
Mol. Cell
, vol.25
, pp. 505-517
-
-
Munro, J.B.1
Altman, R.B.2
O'Connor, N.3
Blanchard, S.C.4
-
112
-
-
77955841599
-
Intrinsic molecular properties of the protein-protein bridge facilitate ratchet-like motion of the ribosome
-
M. Shasmal, B. Chakraborty, and J. Sengupta Intrinsic molecular properties of the protein-protein bridge facilitate ratchet-like motion of the ribosome Biochem. Biophys. Res. Commun. 399 2010 192 197
-
(2010)
Biochem. Biophys. Res. Commun.
, vol.399
, pp. 192-197
-
-
Shasmal, M.1
Chakraborty, B.2
Sengupta, J.3
-
113
-
-
69249112231
-
Structures of the ribosome in intermediate states of ratcheting
-
W. Zhang, J.A. Dunkle, and J.H. Cate Structures of the ribosome in intermediate states of ratcheting Science 325 2009 1014 1017
-
(2009)
Science
, vol.325
, pp. 1014-1017
-
-
Zhang, W.1
Dunkle, J.A.2
Cate, J.H.3
-
114
-
-
84906308939
-
The ribosome uses cooperative conformational changes to maximize and regulate the efficiency of translation
-
W. Ning, J. Fei, and R.L. Gonzalez Jr. The ribosome uses cooperative conformational changes to maximize and regulate the efficiency of translation Proc. Natl. Acad. Sci. U. S. A. 111 2014 12073 12078
-
(2014)
Proc. Natl. Acad. Sci. U. S. A.
, vol.111
, pp. 12073-12078
-
-
Ning, W.1
Fei, J.2
Gonzalez, R.L.3
-
115
-
-
76249114762
-
Spontaneous formation of the unlocked state of the ribosome is a multistep process
-
J.B. Munro, R.B. Altman, C.S. Tung, J.H. Cate, K.Y. Sanbonmatsu, and S.C. Blanchard Spontaneous formation of the unlocked state of the ribosome is a multistep process Proc. Natl. Acad. Sci. U. S. A. 107 2010 709 714
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 709-714
-
-
Munro, J.B.1
Altman, R.B.2
Tung, C.S.3
Cate, J.H.4
Sanbonmatsu, K.Y.5
Blanchard, S.C.6
-
116
-
-
0038433302
-
An elongation factor G-induced ribosome rearrangement precedes tRNA-mRNA translocation
-
A. Savelsbergh, V.I. Katunin, D. Mohr, F. Peske, M.V. Rodnina, and W. Wintermeyer An elongation factor G-induced ribosome rearrangement precedes tRNA-mRNA translocation Mol. Cell 11 2003 1517 1523
-
(2003)
Mol. Cell
, vol.11
, pp. 1517-1523
-
-
Savelsbergh, A.1
Katunin, V.I.2
Mohr, D.3
Peske, F.4
Rodnina, M.V.5
Wintermeyer, W.6
-
117
-
-
84871769820
-
Contribution of intersubunit bridges to the energy barrier of ribosomal translocation
-
Q. Liu, and K. Fredrick Contribution of intersubunit bridges to the energy barrier of ribosomal translocation Nucleic Acids Res. 41 2013 565 574
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 565-574
-
-
Liu, Q.1
Fredrick, K.2
-
118
-
-
84870928681
-
Rotation of the head of the 30S ribosomal subunit during mRNA translocation
-
Z. Guo, and H.F. Noller Rotation of the head of the 30S ribosomal subunit during mRNA translocation Proc. Natl. Acad. Sci. U. S. A. 109 2012 20391 20394
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 20391-20394
-
-
Guo, Z.1
Noller, H.F.2
-
119
-
-
6344252614
-
Conformational changes of the small ribosomal subunit during elongation factor G-dependent tRNA-mRNA translocation
-
F. Peske, A. Savelsbergh, V.I. Katunin, M.V. Rodnina, and W. Wintermeyer Conformational changes of the small ribosomal subunit during elongation factor G-dependent tRNA-mRNA translocation J. Mol. Biol. 343 2004 1183 1194
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 1183-1194
-
-
Peske, F.1
Savelsbergh, A.2
Katunin, V.I.3
Rodnina, M.V.4
Wintermeyer, W.5
-
120
-
-
35348857512
-
A steric block in translation caused by the antibiotic spectinomycin
-
M.A. Borovinskaya, S. Shoji, J.M. Holton, K. Fredrick, and J.H. Cate A steric block in translation caused by the antibiotic spectinomycin ACS Chem. Biol. 2 2007 545 552
-
(2007)
ACS Chem. Biol.
, vol.2
, pp. 545-552
-
-
Borovinskaya, M.A.1
Shoji, S.2
Holton, J.M.3
Fredrick, K.4
Cate, J.H.5
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