-
1
-
-
0034637161
-
The structural basis of ribosome activity in peptide bond synthesis
-
Nissen, P., Hansen, J., Ban, N., Moore, P.B. & Steitz, T.A. The structural basis of ribosome activity in peptide bond synthesis. Science 289, 920-930 (2000).
-
(2000)
Science
, vol.289
, pp. 920-930
-
-
Nissen, P.1
Hansen, J.2
Ban, N.3
Moore, P.B.4
Steitz, T.A.5
-
2
-
-
44349132844
-
Structural insights into the functions of the large ribosomal subunit, a major antibiotic target
-
Steitz, T.A. Structural insights into the functions of the large ribosomal subunit, a major antibiotic target. Keio J. Med. 57, 1-14 (2008).
-
(2008)
Keio J. Med
, vol.57
, pp. 1-14
-
-
Steitz, T.A.1
-
3
-
-
33845604650
-
Mechanism of peptide bond formation on the ribosome
-
Rodnina, M.V., Beringer, M. & Wintermeyer, W. Mechanism of peptide bond formation on the ribosome. Q. Rev. Biophys. 39, 203-225 (2006).
-
(2006)
Q. Rev. Biophys
, vol.39
, pp. 203-225
-
-
Rodnina, M.V.1
Beringer, M.2
Wintermeyer, W.3
-
4
-
-
33748582906
-
Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements
-
Korostelev, A., Trakhanov, S., Laurberg, M. & Noller, H.F. Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements. Cell 126, 1065-1077 (2006).
-
(2006)
Cell
, vol.126
, pp. 1065-1077
-
-
Korostelev, A.1
Trakhanov, S.2
Laurberg, M.3
Noller, H.F.4
-
5
-
-
0037249473
-
Structural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression
-
Bashan, A. et al. Structural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression. Mol. Cell 11, 91-102 (2003).
-
(2003)
Mol. Cell
, vol.11
, pp. 91-102
-
-
Bashan, A.1
-
6
-
-
0032584743
-
Ribosomal protein L27 participates in both 50 S subunit assembly and the peptidyl transferase reaction
-
Wower, I.K., Wower, J. & Zimmermann, R.A. Ribosomal protein L27 participates in both 50 S subunit assembly and the peptidyl transferase reaction. J. Biol. Chem. 273, 19847-19852 (1998).
-
(1998)
J. Biol. Chem
, vol.273
, pp. 19847-19852
-
-
Wower, I.K.1
Wower, J.2
Zimmermann, R.A.3
-
7
-
-
0343081929
-
phe derivatives containing azidoadenosine at the 3′ end of the acceptor arm: A model of the tRNA-ribosome complex
-
phe derivatives containing azidoadenosine at the 3′ end of the acceptor arm: a model of the tRNA-ribosome complex. Proc. Natl. Acad. Sci. USA 86, 5232-5236 (1989).
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 5232-5236
-
-
Wower, J.1
Hixson, S.S.2
Zimmermann, R.A.3
-
8
-
-
27644598282
-
A protein component at the heart of an RNA machine: The importance of protein l27 for the function of the bacterial ribosome
-
Maguire, B.A., Beniaminov, A.D., Ramu, H., Mankin, A.S. & Zimmermann, R.A. A protein component at the heart of an RNA machine: the importance of protein l27 for the function of the bacterial ribosome. Mol. Cell 20, 427-435 (2005).
-
(2005)
Mol. Cell
, vol.20
, pp. 427-435
-
-
Maguire, B.A.1
Beniaminov, A.D.2
Ramu, H.3
Mankin, A.S.4
Zimmermann, R.A.5
-
9
-
-
0009934632
-
Identification of a ribosomal protein essential for peptidyl transferase activity
-
Moore, V.G., Atchison, R.E., Thomas, G., Moran, M. & Noller, H.F. Identification of a ribosomal protein essential for peptidyl transferase activity. Proc. Natl. Acad. Sci. USA 72, 844-848 (1975).
-
(1975)
Proc. Natl. Acad. Sci. USA
, vol.72
, pp. 844-848
-
-
Moore, V.G.1
Atchison, R.E.2
Thomas, G.3
Moran, M.4
Noller, H.F.5
-
10
-
-
0017188146
-
Binding of aminoacyl-tRNA to reconstituted subparticles of Escherichia coli large ribosomal subunits
-
Kazemie, M. Binding of aminoacyl-tRNA to reconstituted subparticles of Escherichia coli large ribosomal subunits. Eur. J. Biochem. 67, 373-378 (1976).
-
(1976)
Eur. J. Biochem
, vol.67
, pp. 373-378
-
-
Kazemie, M.1
-
11
-
-
33749354360
-
Structure of the 70S ribosome complexed with mRNA and tRNA
-
Selmer, M. et al. Structure of the 70S ribosome complexed with mRNA and tRNA. Science 313, 1935-1942 (2006).
-
(2006)
Science
, vol.313
, pp. 1935-1942
-
-
Selmer, M.1
-
12
-
-
0033231562
-
Base-pairing between 23S rRNA and tRNA in the ribosomal A site
-
Kim, D.F. & Green, R. Base-pairing between 23S rRNA and tRNA in the ribosomal A site. Mol. Cell 4, 859-864 (1999).
-
(1999)
Mol. Cell
, vol.4
, pp. 859-864
-
-
Kim, D.F.1
Green, R.2
-
13
-
-
0035942248
-
RNA tertiary interactions in the large ribosomal subunit: The A-minor motif
-
Nissen, P., Ippolito, J.A., Ban, N., Moore, P.B. & Steitz, T.A. RNA tertiary interactions in the large ribosomal subunit: the A-minor motif. Proc. Natl. Acad. Sci. USA 98, 4899-4903 (2001).
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 4899-4903
-
-
Nissen, P.1
Ippolito, J.A.2
Ban, N.3
Moore, P.B.4
Steitz, T.A.5
-
14
-
-
28544452248
-
An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA
-
Schmeing, T.M., Huang, K.S., Strobel, S.A. & Steitz, T.A. An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA. Nature 438, 520-524 (2005).
-
(2005)
Nature
, vol.438
, pp. 520-524
-
-
Schmeing, T.M.1
Huang, K.S.2
Strobel, S.A.3
Steitz, T.A.4
-
15
-
-
7544220590
-
Substrate-assisted catalysis of peptide bond formation by the ribosome
-
Weinger, J.S., Parnell, K.M., Dorner, S., Green, R. & Strobel, S.A. Substrate-assisted catalysis of peptide bond formation by the ribosome. Nat. Struct. Mol. Biol. 11, 1101-1106 (2004).
-
(2004)
Nat. Struct. Mol. Biol
, vol.11
, pp. 1101-1106
-
-
Weinger, J.S.1
Parnell, K.M.2
Dorner, S.3
Green, R.4
Strobel, S.A.5
-
16
-
-
0345099498
-
Mononucleotide derivatives as ribosomal P-site substrates reveal an important contribution of the 2′-OH to activity
-
Dorner, S., Panuschka, C., Schmid, W. & Barta, A. Mononucleotide derivatives as ribosomal P-site substrates reveal an important contribution of the 2′-OH to activity. Nucleic Acids Res. 31, 6536-6542 (2003).
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 6536-6542
-
-
Dorner, S.1
Panuschka, C.2
Schmid, W.3
Barta, A.4
-
17
-
-
33745633573
-
Rapid peptide bond formation on isolated 50S ribosomal subunits
-
699-703
-
Wohlgemuth, I., Beringer, M. & Rodnina, M.V. Rapid peptide bond formation on isolated 50S ribosomal subunits. EMBO Rep. 7, 699-703 (2006).
-
(2006)
EMBO Rep
, vol.7
-
-
Wohlgemuth, I.1
Beringer, M.2
Rodnina, M.V.3
-
18
-
-
2942592157
-
Contribution of the esterified amino acid to the binding of aminoacylated tRNAs to the ribosomal P- and A-sites
-
Fahlman, R.P. & Uhlenbeck, O.C. Contribution of the esterified amino acid to the binding of aminoacylated tRNAs to the ribosomal P- and A-sites. Biochemistry 43, 7575-7583 (2004).
-
(2004)
Biochemistry
, vol.43
, pp. 7575-7583
-
-
Fahlman, R.P.1
Uhlenbeck, O.C.2
-
19
-
-
9744230656
-
Uniform binding of aminoacylated transfer RNAs to the ribosomal A and P sites
-
Fahlman, R.P., Dale, T. & Uhlenbeck, O.C. Uniform binding of aminoacylated transfer RNAs to the ribosomal A and P sites. Mol. Cell 16, 799-805 (2004).
-
(2004)
Mol. Cell
, vol.16
, pp. 799-805
-
-
Fahlman, R.P.1
Dale, T.2
Uhlenbeck, O.C.3
-
20
-
-
0033762347
-
Energetic contribution of tRNA hybrid state formation to translocation catalysis on the ribosome
-
Semenkov, Y.P., Rodnina, M.V. & Wintermeyer, W. Energetic contribution of tRNA hybrid state formation to translocation catalysis on the ribosome. Nat. Struct. Biol. 7, 1027-1031 (2000).
-
(2000)
Nat. Struct. Biol
, vol.7
, pp. 1027-1031
-
-
Semenkov, Y.P.1
Rodnina, M.V.2
Wintermeyer, W.3
-
21
-
-
0022494313
-
Affinities of tRNA binding sites of ribosomes from Escherichia coli
-
Lill, R., Robertson, J.M. & Wintermeyer, W. Affinities of tRNA binding sites of ribosomes from Escherichia coli. Biochemistry 25, 3245-3255 (1986).
-
(1986)
Biochemistry
, vol.25
, pp. 3245-3255
-
-
Lill, R.1
Robertson, J.M.2
Wintermeyer, W.3
-
22
-
-
0026754743
-
Apparent association constants of tRNAs for the ribosomal A, P, and E sites
-
Schilling-Bartetzko, S., Franceschi, F., Sternbach, H. & Nierhaus, K.H. Apparent association constants of tRNAs for the ribosomal A, P, and E sites. J. Biol. Chem. 267, 4693-4702 (1992).
-
(1992)
J. Biol. Chem
, vol.267
, pp. 4693-4702
-
-
Schilling-Bartetzko, S.1
Franceschi, F.2
Sternbach, H.3
Nierhaus, K.H.4
-
23
-
-
0036810254
-
Release of peptide promoted by the GGQ motif of class 1 release factors regulates the GTPase activity of RF3
-
Zavialov, A.V., Mora, L., Buckingham, R.H. & Ehrenberg, M. Release of peptide promoted by the GGQ motif of class 1 release factors regulates the GTPase activity of RF3. Mol. Cell 10, 789-798 (2002).
-
(2002)
Mol. Cell
, vol.10
, pp. 789-798
-
-
Zavialov, A.V.1
Mora, L.2
Buckingham, R.H.3
Ehrenberg, M.4
-
24
-
-
0015174609
-
Hydrolysis of fMet-tRNA by peptidyl transferase
-
Caskey, C.T., Beaudet, A.L., Scolnick, E.M. & Rosman, M. Hydrolysis of fMet-tRNA by peptidyl transferase. Proc. Natl. Acad. Sci. USA 68, 3163-3167 (1971).
-
(1971)
Proc. Natl. Acad. Sci. USA
, vol.68
, pp. 3163-3167
-
-
Caskey, C.T.1
Beaudet, A.L.2
Scolnick, E.M.3
Rosman, M.4
-
25
-
-
49649099901
-
Structural basis for translation termination on the 70S ribosome
-
Laurberg, M. et al. Structural basis for translation termination on the 70S ribosome. Nature 454, 852-857 (2008).
-
(2008)
Nature
, vol.454
, pp. 852-857
-
-
Laurberg, M.1
-
26
-
-
55849143658
-
Insights into translational termination from the structure of RF2 bound to the ribosome
-
Weixlbaumer, A. et al. Insights into translational termination from the structure of RF2 bound to the ribosome. Science 322, 953-956 (2008).
-
(2008)
Science
, vol.322
, pp. 953-956
-
-
Weixlbaumer, A.1
-
27
-
-
0025280137
-
The allosteric three-site model for the ribosomal elongation cycle: Features and future
-
Nierhaus, K.H. The allosteric three-site model for the ribosomal elongation cycle: features and future. Biochemistry 29, 4997-5008 (1990).
-
(1990)
Biochemistry
, vol.29
, pp. 4997-5008
-
-
Nierhaus, K.H.1
-
28
-
-
0034637111
-
The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
-
Ban, N., Nissen, P., Hansen, J., Moore, P.B. & Steitz, T.S. The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science 289, 905-920 (2000).
-
(2000)
Science
, vol.289
, pp. 905-920
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Moore, P.B.4
Steitz, T.S.5
-
29
-
-
0034750741
-
Differential effects of replacing Escherichia coli ribosomal protein L27 with its homologue from Aquifex aeolicus
-
Maguire, B.A., Manuilov, A.V. & Zimmermann, R.A. Differential effects of replacing Escherichia coli ribosomal protein L27 with its homologue from Aquifex aeolicus. J. Bacteriol. 183, 6565-6572 (2001).
-
(2001)
J. Bacteriol
, vol.183
, pp. 6565-6572
-
-
Maguire, B.A.1
Manuilov, A.V.2
Zimmermann, R.A.3
-
30
-
-
0016828836
-
The primary structure of protein L27 from the peptidyl-tRNA binding side of Escherichia coli ribosomes
-
Chen, R., Mende, L. & Arfsten, U. The primary structure of protein L27 from the peptidyl-tRNA binding side of Escherichia coli ribosomes. FEBS Lett. 59, 96-99 (1975).
-
(1975)
FEBS Lett
, vol.59
, pp. 96-99
-
-
Chen, R.1
Mende, L.2
Arfsten, U.3
-
31
-
-
10744230543
-
Characterization and analysis of posttranslational modifications of the human large cytoplasmic ribosomal subunit proteins by mass spectrometry and Edman sequencing
-
Odintsova, T.I. et al. Characterization and analysis of posttranslational modifications of the human large cytoplasmic ribosomal subunit proteins by mass spectrometry and Edman sequencing. J. Protein Chem. 22, 249-258 (2003).
-
(2003)
J. Protein Chem
, vol.22
, pp. 249-258
-
-
Odintsova, T.I.1
-
32
-
-
7044274658
-
Characterization of the 70S ribosome from Rhodopseudomonas palustris using an integrated "top-down" and "bottom-up" mass spectrometric approach
-
Strader, M.B. et al. Characterization of the 70S ribosome from Rhodopseudomonas palustris using an integrated "top-down" and "bottom-up" mass spectrometric approach. J. Proteome Res. 3, 965-978 (2004).
-
(2004)
J. Proteome Res
, vol.3
, pp. 965-978
-
-
Strader, M.B.1
-
33
-
-
29544436497
-
Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry
-
Suh, M.J., Hamburg, D.M., Gregory, S.T., Dahlberg, A.E. & Limbach, P.A. Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry. Proteomics 5, 4818-4831 (2005).
-
(2005)
Proteomics
, vol.5
, pp. 4818-4831
-
-
Suh, M.J.1
Hamburg, D.M.2
Gregory, S.T.3
Dahlberg, A.E.4
Limbach, P.A.5
-
34
-
-
42449134886
-
Role of ribosomal protein L27 in peptidyl transfer
-
Trobro, S. & Aqvist, J. Role of ribosomal protein L27 in peptidyl transfer. Biochemistry 47, 4898-4906 (2008).
-
(2008)
Biochemistry
, vol.47
, pp. 4898-4906
-
-
Trobro, S.1
Aqvist, J.2
-
35
-
-
67349186538
-
Ribosomal components from Escherichia coli 50S subunits involved in the reconstitution of peptidyl transferase activity
-
Hampl, H., Schulze, H. & Nierhause, K.H. Ribosomal components from Escherichia coli 50S subunits involved in the reconstitution of peptidyl transferase activity. J. Biol. Chem. 258, 12810-12815 (1981).
-
(1981)
J. Biol. Chem
, vol.258
, pp. 12810-12815
-
-
Hampl, H.1
Schulze, H.2
Nierhause, K.H.3
-
36
-
-
12244284912
-
Structure of the ribosome at 5.5 A resolution and its interactions with functional ligands
-
Noller, H.F. et al. Structure of the ribosome at 5.5 A resolution and its interactions with functional ligands. Cold Spring Harb. Symp. Quant. Biol. 66, 57-66 (2001).
-
(2001)
Cold Spring Harb. Symp. Quant. Biol
, vol.66
, pp. 57-66
-
-
Noller, H.F.1
-
37
-
-
9244241530
-
Solution structure of ribosomal protein L16 from Thermus thermophilus HB8
-
Nishimura, M. et al. Solution structure of ribosomal protein L16 from Thermus thermophilus HB8. J. Mol. Biol. 344, 1369-1383 (2004).
-
(2004)
J. Mol. Biol
, vol.344
, pp. 1369-1383
-
-
Nishimura, M.1
-
38
-
-
0035957387
-
A novel site of antibiotic action in the ribosome: Interaction of evernimicin with the large ribosomal subunit
-
Belova, L., Tenson, T., Xiong, L., McNicholas, P.M. & Mankin, A.S. A novel site of antibiotic action in the ribosome: interaction of evernimicin with the large ribosomal subunit. Proc. Natl. Acad. Sci. USA 98, 3726-3731 (2001).
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 3726-3731
-
-
Belova, L.1
Tenson, T.2
Xiong, L.3
McNicholas, P.M.4
Mankin, A.S.5
-
39
-
-
0015843818
-
Synthesis and aminoacylation of 3′-amino-3′-deoxy transfer RNA and its activity in ribosomal protein synthesis
-
Fraser, T.H. & Rich, A. Synthesis and aminoacylation of 3′-amino-3′-deoxy transfer RNA and its activity in ribosomal protein synthesis. Proc. Natl. Acad. Sci. USA 70, 2671-2675 (1973).
-
(1973)
Proc. Natl. Acad. Sci. USA
, vol.70
, pp. 2671-2675
-
-
Fraser, T.H.1
Rich, A.2
-
40
-
-
0035977250
-
Syntheses of puromycin from adenosine and 7-deazapuromycin from tubercidin, and biological comparisons of the 7-aza/deaza pair
-
Robins, M.J., Miles, R.W., Samano, M.C. & Kaspar, R.L. Syntheses of puromycin from adenosine and 7-deazapuromycin from tubercidin, and biological comparisons of the 7-aza/deaza pair. J. Org. Chem. 66, 8204-8210 (2001).
-
(2001)
J. Org. Chem
, vol.66
, pp. 8204-8210
-
-
Robins, M.J.1
Miles, R.W.2
Samano, M.C.3
Kaspar, R.L.4
-
41
-
-
0019760168
-
A new route to nucleoside 5′-triphosphates
-
Ludwig, J. A new route to nucleoside 5′-triphosphates. Acta Biochim. Biophys. Acad. Sci. Hung. 16, 131-133 (1981).
-
(1981)
Acta Biochim. Biophys. Acad. Sci. Hung
, vol.16
, pp. 131-133
-
-
Ludwig, J.1
-
42
-
-
0027879008
-
Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
-
Kabsch, W. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J. Appl. Cryst. 26, 795-800 (1993).
-
(1993)
J. Appl. Cryst
, vol.26
, pp. 795-800
-
-
Kabsch, W.1
-
43
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macro-molecular structure determination
-
Brunger, A.T. et al. Crystallography & NMR system: a new software suite for macro-molecular structure determination. Acta Cryst. D. Biol. Crystallogr. 54, 905-921 (1998).
-
(1998)
Acta Cryst. D. Biol. Crystallogr
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
-
44
-
-
27644557445
-
Structural insights into the roles of water and the 2′ hydroxyl of the P site tRNA in the peptidyl transferase reaction
-
Schmeing, T.M., Huang, K.S., Kitchen, D.E., Strobel, S.A. & Steitz, T.A. Structural insights into the roles of water and the 2′ hydroxyl of the P site tRNA in the peptidyl transferase reaction. Mol. Cell 20, 437-448 (2005).
-
(2005)
Mol. Cell
, vol.20
, pp. 437-448
-
-
Schmeing, T.M.1
Huang, K.S.2
Kitchen, D.E.3
Strobel, S.A.4
Steitz, T.A.5
|