메뉴 건너뛰기




Volumn 20, Issue 4, 2014, Pages 496-504

Distinct functional classes of ram mutations in 16S rRNA

Author keywords

Decoding; EF Tu; Ribosome; Translation; TRNA

Indexed keywords

AMINOACYL TRANSFER RNA; ELONGATION FACTOR TU; GUANOSINE TRIPHOSPHATE; RNA 16S;

EID: 84896540630     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.043331.113     Document Type: Article
Times cited : (12)

References (46)
  • 1
    • 0032473357 scopus 로고    scopus 로고
    • Mutations in RNAs of both ribosomal subunits cause defects in translation termination
    • Arkov AL, Freistroffer DV, Ehrenberg M, Murgola EJ. 1998. Mutations in RNAs of both ribosomal subunits cause defects in translation termination. EMBO J 17: 1507-1514.
    • (1998) EMBO J , vol.17 , pp. 1507-1514
    • Arkov, A.L.1    Freistroffer, D.V.2    Ehrenberg, M.3    Murgola, E.J.4
  • 2
    • 0033809290 scopus 로고    scopus 로고
    • Mutations in conserved regions of ribosomal RNAs decrease the productive association of peptide-chain release factors with the ribosome during translation termination
    • Arkov AL, Freistroffer DV, Pavlov MY, Ehrenberg M, Murgola EJ. 2000. Mutations in conserved regions of ribosomal RNAs decrease the productive association of peptide-chain release factors with the ribosome during translation termination. Biochimie 82: 671-682.
    • (2000) Biochimie , vol.82 , pp. 671-682
    • Arkov, A.L.1    Freistroffer, D.V.2    Pavlov, M.Y.3    Ehrenberg, M.4    Murgola, E.J.5
  • 3
    • 0032896612 scopus 로고    scopus 로고
    • Novel ribosomal mutations affecting translational accuracy, antibiotic resistance and virulence of Salmonella typhimurium
    • Bjorkman J, Samuelsson P, Andersson DI, Hughes D. 1999. Novel ribosomal mutations affecting translational accuracy, antibiotic resistance and virulence of Salmonella typhimurium. Mol Microbiol 31: 53-58.
    • (1999) Mol Microbiol , vol.31 , pp. 53-58
    • Bjorkman, J.1    Samuelsson, P.2    Andersson, D.I.3    Hughes, D.4
  • 6
    • 0030006310 scopus 로고    scopus 로고
    • The translational function of nucleotide C1054 in the small subunit rRNA is conserved throughout evolution: Genetic evidence in yeast
    • Chernoff YO, Newnam GP, Liebman SW. 1996. The translational function of nucleotide C1054 in the small subunit rRNA is conserved throughout evolution: Genetic evidence in yeast. Proc Natl Acad Sci 93: 2517-2522.
    • (1996) Proc Natl Acad Sci , vol.93 , pp. 2517-2522
    • Chernoff, Y.O.1    Newnam, G.P.2    Liebman, S.W.3
  • 7
    • 0033814232 scopus 로고    scopus 로고
    • A novel mutation in ribosomal protein S4 that affects the function of a mutated RF1
    • Dahlgren A, Ryden-Aulin M. 2000. A novel mutation in ribosomal protein S4 that affects the function of a mutated RF1. Biochimie 82: 683-691.
    • (2000) Biochimie , vol.82 , pp. 683-691
    • Dahlgren, A.1    Ryden-Aulin, M.2
  • 8
    • 78649983214 scopus 로고    scopus 로고
    • Short spacing between the Shine-Dalgarno sequence and P codon destabilizes codon-anticodon pairing in the P site to promote +1 programmed frameshifting
    • Devaraj A, Fredrick K. 2010. Short spacing between the Shine-Dalgarno sequence and P codon destabilizes codon-anticodon pairing in the P site to promote +1 programmed frameshifting. Mol Microbiol 78: 1500-1509.
    • (2010) Mol Microbiol , vol.78 , pp. 1500-1509
    • Devaraj, A.1    Fredrick, K.2
  • 11
    • 0036282055 scopus 로고    scopus 로고
    • Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site
    • Fredrick K, Noller HF. 2002. Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site. Mol Cell 9: 1125-1131.
    • (2002) Mol Cell , vol.9 , pp. 1125-1131
    • Fredrick, K.1    Noller, H.F.2
  • 13
    • 0842267211 scopus 로고    scopus 로고
    • Kinetic determinants of high-fidelity tRNA discrimination on the ribosome
    • Gromadski KB, Rodnina MV. 2004. Kinetic determinants of high-fidelity tRNA discrimination on the ribosome. Mol Cell 13: 191-200.
    • (2004) Mol Cell , vol.13 , pp. 191-200
    • Gromadski, K.B.1    Rodnina, M.V.2
  • 14
    • 31544454704 scopus 로고    scopus 로고
    • A uniform response to mismatches in codon-anticodon complexes ensures ribosomal fidelity
    • Gromadski KB, Daviter T, Rodnina MV. 2006. A uniform response to mismatches in codon-anticodon complexes ensures ribosomal fidelity. Mol Cell 21: 369-377.
    • (2006) Mol Cell , vol.21 , pp. 369-377
    • Gromadski, K.B.1    Daviter, T.2    Rodnina, M.V.3
  • 15
    • 0025016539 scopus 로고
    • The involvement of base 1054 in 16S rRNA for UGA stop codon dependent translational termination
    • Hanfler A, Kleuvers B, Goringer HU. 1990. The involvement of base 1054 in 16S rRNA for UGA stop codon dependent translational termination. Nucleic Acids Res 18: 5625-5632.
    • (1990) Nucleic Acids Res , vol.18 , pp. 5625-5632
    • Hanfler, A.1    Kleuvers, B.2    Goringer, H.U.3
  • 16
    • 84862963791 scopus 로고    scopus 로고
    • Genetic code translation displays a linear trade-off between efficiency and accuracy of tRNA selection
    • Johansson M, Zhang J, Ehrenberg M. 2012. Genetic code translation displays a linear trade-off between efficiency and accuracy of tRNA selection. Proc Natl Acad Sci 109: 131-136.
    • (2012) Proc Natl Acad Sci , vol.109 , pp. 131-136
    • Johansson, M.1    Zhang, J.2    Ehrenberg, M.3
  • 17
    • 33645214551 scopus 로고    scopus 로고
    • Translational fidelity mutations in 18S rRNA affect the catalytic activity of ribosomes and the oxidative balance of yeast cells
    • Konstantinidis TC, Patsoukis N, Georgiou CD, Synetos D. 2006. Translational fidelity mutations in 18S rRNA affect the catalytic activity of ribosomes and the oxidative balance of yeast cells. Biochemistry 45: 3525-3533.
    • (2006) Biochemistry , vol.45 , pp. 3525-3533
    • Konstantinidis, T.C.1    Patsoukis, N.2    Georgiou, C.D.3    Synetos, D.4
  • 18
    • 33845895536 scopus 로고    scopus 로고
    • The frequency of translational misreading errors in E. Coli is largely determined by tRNA competition
    • Kramer EB, Farabaugh PJ. 2007. The frequency of translational misreading errors in E. coli is largely determined by tRNA competition. RNA 13: 87-96.
    • (2007) RNA , vol.13 , pp. 87-96
    • Kramer, E.B.1    Farabaugh, P.J.2
  • 19
    • 64049100740 scopus 로고    scopus 로고
    • A sequence element that tunes Escherichia coli tRNAAla GGC to ensure accurate decoding
    • Ledoux S, Olejniczak M, Uhlenbeck OC. 2009. A sequence element that tunes Escherichia coli tRNAAla GGC to ensure accurate decoding. Nat Struct Mol Biol 16: 359-364.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 359-364
    • Ledoux, S.1    Olejniczak, M.2    Uhlenbeck, O.C.3
  • 20
    • 77953643054 scopus 로고    scopus 로고
    • Adding new chemistries to the genetic code
    • Liu CC, Schultz PG. 2010. Adding new chemistries to the genetic code. Annu Rev Biochem 79: 413-444.
    • (2010) Annu Rev Biochem , vol.79 , pp. 413-444
    • Liu, C.C.1    Schultz, P.G.2
  • 21
    • 0036431723 scopus 로고    scopus 로고
    • Compensatory adaptation to the deleterious effect of antibiotic resistance in Salmonella typhimurium
    • Maisnier-Patin S, Berg OG, Liljas L, Andersson DI. 2002. Compensatory adaptation to the deleterious effect of antibiotic resistance in Salmonella typhimurium. Mol Microbiol 46: 355-366.
    • (2002) Mol Microbiol , vol.46 , pp. 355-366
    • Maisnier-Patin, S.1    Berg, O.G.2    Liljas, L.3    Andersson, D.I.4
  • 22
    • 33846317719 scopus 로고    scopus 로고
    • Compensatory evolution reveals functional interactions between ribosomal proteins S12, L14 and L19
    • Maisnier-Patin S, Paulander W, Pennhag A, Andersson DI. 2007. Compensatory evolution reveals functional interactions between ribosomal proteins S12, L14 and L19. J Mol Biol 366: 207-215.
    • (2007) J Mol Biol , vol.366 , pp. 207-215
    • Maisnier-Patin, S.1    Paulander, W.2    Pennhag, A.3    Andersson, D.I.4
  • 23
    • 84890674142 scopus 로고    scopus 로고
    • Studies of translational misreading in vivo show that the ribosome very efficiently discriminates against most potential errors
    • Manickam N, Nag N, Abbasi A, Patel K, Farabaugh PJ. 2014. Studies of translational misreading in vivo show that the ribosome very efficiently discriminates against most potential errors. RNA 20: 9-15.
    • (2014) RNA , vol.20 , pp. 9-15
    • Manickam, N.1    Nag, N.2    Abbasi, A.3    Patel, K.4    Farabaugh, P.J.5
  • 24
    • 77957320587 scopus 로고    scopus 로고
    • Missense suppressor mutations in 16S rRNA reveal the importance of helices h8 and h14 in aminoacyl-tRNA selection
    • McClory SP, Leisring JM, Qin D, Fredrick K. 2010. Missense suppressor mutations in 16S rRNA reveal the importance of helices h8 and h14 in aminoacyl-tRNA selection. RNA 16: 1925-1934.
    • (2010) RNA , vol.16 , pp. 1925-1934
    • McClory, S.P.1    Leisring, J.M.2    Qin, D.3    Fredrick, K.4
  • 25
    • 84893662384 scopus 로고    scopus 로고
    • Mutations in 16S rRNA that decrease the fidelity of translation
    • (ed. Rodnina MV, et al.), Springer-Verlag, Austria
    • McClory SP, Devaraj A, Qin D, Leisring JM, Fredrick K. 2011. Mutations in 16S rRNA that decrease the fidelity of translation. In Ribosomes (ed. Rodnina MV, et al.), pp. 237-247. Springer-Verlag, Austria.
    • (2011) Ribosomes , pp. 237-247
    • McClory, S.P.1    Devaraj, A.2    Qin, D.3    Leisring, J.M.4    Fredrick, K.5
  • 26
    • 1942445134 scopus 로고    scopus 로고
    • Transformation of aminoacyltRNAs for the in vitro selection of "drug-like" molecules
    • Merryman C, Green R. 2004. Transformation of aminoacyltRNAs for the in vitro selection of "drug-like" molecules. Chem Biol 11: 575-582.
    • (2004) Chem Biol , vol.11 , pp. 575-582
    • Merryman, C.1    Green, R.2
  • 27
    • 16544374004 scopus 로고    scopus 로고
    • Structure of a purine-purine wobble base pair in the decoding center of the ribosome
    • Murphy FV, Ramakrishnan V. 2004. Structure of a purine-purine wobble base pair in the decoding center of the ribosome. Nat Struct Mol Biol 11: 1251-1252.
    • (2004) Nat Struct Mol Biol , vol.11 , pp. 1251-1252
    • Murphy, F.V.1    Ramakrishnan, V.2
  • 28
    • 77949772551 scopus 로고    scopus 로고
    • Encoding multiple unnatural amino acids via evolution of a quadruplet- decoding ribosome
    • Neumann H, Wang K, Davis L, Garcia-Alai M, Chin JW. 2010. Encoding multiple unnatural amino acids via evolution of a quadruplet- decoding ribosome. Nature 464: 441-444.
    • (2010) Nature , vol.464 , pp. 441-444
    • Neumann, H.1    Wang, K.2    Davis, L.3    Garcia-Alai, M.4    Chin, J.W.5
  • 30
    • 0037184536 scopus 로고    scopus 로고
    • Selection of tRNA by the ribosome requires a transition from an open to a closed form
    • Ogle JM, Murphy FV, Tarry MJ, Ramakrishnan V. 2002. Selection of tRNA by the ribosome requires a transition from an open to a closed form. Cell 111: 721-732.
    • (2002) Cell , vol.111 , pp. 721-732
    • Ogle, J.M.1    Murphy, F.V.2    Tarry, M.J.3    Ramakrishnan, V.4
  • 31
    • 0018291250 scopus 로고
    • Analysis of rpsD mutations in Escherichia coli. I. Comparison of mutants with various alterations in ribosomal protein S4
    • Olsson MO, Isaksson LA. 1979. Analysis of rpsD mutations in Escherichia coli. I. Comparison of mutants with various alterations in ribosomal protein S4. Mol Gen Genet 169: 251-257.
    • (1979) Mol Gen Genet , vol.169 , pp. 251-257
    • Olsson, M.O.1    Isaksson, L.A.2
  • 32
    • 79960396249 scopus 로고    scopus 로고
    • Helix 69 is key for uniformity during substrate selection on the ribosome
    • Ortiz-Meoz RF, Green R. 2011. Helix 69 is key for uniformity during substrate selection on the ribosome. J Biol Chem 286: 25604-25610.
    • (2011) J Biol Chem , vol.286 , pp. 25604-25610
    • Ortiz-Meoz, R.F.1    Green, R.2
  • 33
    • 0031576998 scopus 로고    scopus 로고
    • Phenotypic heterogeneity of mutational changes at a conserved nucleotide in 16 S ribosomal RNA
    • Pagel FT, Zhao SQ, Hijazi KA, Murgola EJ. 1997. Phenotypic heterogeneity of mutational changes at a conserved nucleotide in 16 S ribosomal RNA. J Mol Biol 267: 1113-1123.
    • (1997) J Mol Biol , vol.267 , pp. 1113-1123
    • Pagel, F.T.1    Zhao, S.Q.2    Hijazi, K.A.3    Murgola, E.J.4
  • 34
    • 0033168212 scopus 로고    scopus 로고
    • Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome
    • Pape T, Wintermeyer W, Rodnina M. 1999. Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome. EMBO J 18: 3800-3807.
    • (1999) EMBO J , vol.18 , pp. 3800-3807
    • Pape, T.1    Wintermeyer, W.2    Rodnina, M.3
  • 35
    • 0026535291 scopus 로고
    • Mutations in E. Coli 16s rRNA that enhance and decrease the activity of a suppressor tRNA
    • Prescott CD, Kornau HC. 1992. Mutations in E. coli 16s rRNA that enhance and decrease the activity of a suppressor tRNA. Nucleic Acids Res 20: 1567-1571.
    • (1992) Nucleic Acids Res , vol.20 , pp. 1567-1571
    • Prescott, C.D.1    Kornau, H.C.2
  • 36
    • 0026044144 scopus 로고
    • Ribosomes containing the C1054-deletion mutation in E. Coli 16S rRNA act as suppressors at all three nonsense codons
    • Prescott C, Krabben L, Nierhaus K. 1991. Ribosomes containing the C1054-deletion mutation in E. coli 16S rRNA act as suppressors at all three nonsense codons. Nucleic Acids Res 19: 5281-5283.
    • (1991) Nucleic Acids Res , vol.19 , pp. 5281-5283
    • Prescott, C.1    Krabben, L.2    Nierhaus, K.3
  • 37
    • 60649100084 scopus 로고    scopus 로고
    • Control of translation initiation involves a factor- induced rearrangement of helix 44 of 16S ribosomal RNA
    • Qin D, Fredrick K. 2009. Control of translation initiation involves a factor- induced rearrangement of helix 44 of 16S ribosomal RNA. Mol Microbiol 71: 1239-1249.
    • (2009) Mol Microbiol , vol.71 , pp. 1239-1249
    • Qin, D.1    Fredrick, K.2
  • 38
    • 84855894307 scopus 로고    scopus 로고
    • Quality control of mRNA decoding on the bacterial ribosome
    • Rodnina MV. 2012. Quality control of mRNA decoding on the bacterial ribosome. Adv Protein Chem Struct Biol 86: 95-128.
    • (2012) Adv Protein Chem Struct Biol , vol.86 , pp. 95-128
    • Rodnina, M.V.1
  • 41
    • 33845631049 scopus 로고    scopus 로고
    • Reverse translocation of tRNA in the ribosome
    • Shoji S, Walker SE, Fredrick K. 2006. Reverse translocation of tRNA in the ribosome. Mol Cell 24: 931-942.
    • (2006) Mol Cell , vol.24 , pp. 931-942
    • Shoji, S.1    Walker, S.E.2    Fredrick, K.3
  • 42
    • 66149157000 scopus 로고    scopus 로고
    • Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome
    • Voorhees RM, Weixlbaumer A, Loakes D, Kelley AC, Ramakrishnan V. 2009. Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome. Nat Struct Mol Biol 16: 528-533.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 528-533
    • Voorhees, R.M.1    Weixlbaumer, A.2    Loakes, D.3    Kelley, A.C.4    Ramakrishnan, V.5
  • 43
    • 78149302861 scopus 로고    scopus 로고
    • The mechanism for activation of GTP hydrolysis on the ribosome
    • Voorhees RM, Schmeing TM, Kelley AC, Ramakrishnan V. 2010. The mechanism for activation of GTP hydrolysis on the ribosome. Science 330: 835-838.
    • (2010) Science , vol.330 , pp. 835-838
    • Voorhees, R.M.1    Schmeing, T.M.2    Kelley, A.C.3    Ramakrishnan, V.4
  • 44
    • 38649091983 scopus 로고    scopus 로고
    • Preparation and evaluation of acylated tRNAs
    • Walker SE, Fredrick K. 2008. Preparation and evaluation of acylated tRNAs. Methods 44: 81-86.
    • (2008) Methods , vol.44 , pp. 81-86
    • Walker, S.E.1    Fredrick, K.2
  • 45
    • 77952717308 scopus 로고    scopus 로고
    • Accommodation of aminoacyl-tRNA into the ribosome involves reversible excursions along multiple pathways
    • Whitford PC, Geggier P, Altman RB, Blanchard SC, Onuchic JN, Sanbonmatsu KY. 2010. Accommodation of aminoacyl-tRNA into the ribosome involves reversible excursions along multiple pathways. RNA 16: 1196-1204.
    • (2010) RNA , vol.16 , pp. 1196-1204
    • Whitford, P.C.1    Geggier, P.2    Altman, R.B.3    Blanchard, S.C.4    Onuchic, J.N.5    Sanbonmatsu, K.Y.6
  • 46
    • 77954298382 scopus 로고    scopus 로고
    • Hyperaccurate and error-prone ribosomes exploit distinct mechanisms during tRNA selection
    • Zaher HS, Green R. 2010. Hyperaccurate and error-prone ribosomes exploit distinct mechanisms during tRNA selection. Mol Cell 39: 110-120.
    • (2010) Mol Cell , vol.39 , pp. 110-120
    • Zaher, H.S.1    Green, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.