메뉴 건너뛰기




Volumn 399, Issue 2, 2010, Pages 192-197

Intrinsic molecular properties of the protein-protein bridge facilitate ratchet-like motion of the ribosome

Author keywords

B1b Bridge; Dynamics; Intersubunit contacts; Normal modes; Ratchet like motion

Indexed keywords

CELL PROTEIN; PROTEIN B1B; PROTEIN L5; PROTEIN S13; UNCLASSIFIED DRUG;

EID: 77955841599     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2010.07.053     Document Type: Article
Times cited : (13)

References (26)
  • 5
    • 0034691576 scopus 로고    scopus 로고
    • A ratchet-like inter-subunit reorganization of the ribosome during translocation
    • Frank J., Agrawal R.K. A ratchet-like inter-subunit reorganization of the ribosome during translocation. Nature 2000, 406:318-322.
    • (2000) Nature , vol.406 , pp. 318-322
    • Frank, J.1    Agrawal, R.K.2
  • 8
    • 34247584538 scopus 로고    scopus 로고
    • Intersubunit movement is required for ribosomal translocation
    • Horan L.H., Noller H.F. Intersubunit movement is required for ribosomal translocation. Proc. Natl. Acad. Sci. USA 2007, 104:4881-4885.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 4881-4885
    • Horan, L.H.1    Noller, H.F.2
  • 10
    • 33750488430 scopus 로고    scopus 로고
    • Structural basis for mRNA and tRNA positioning on the ribosome
    • Berk V., Zhang W., Pai R.D., Cate J.H. Structural basis for mRNA and tRNA positioning on the ribosome. Proc. Natl. Acad. Sci. USA 2006, 103:15830-15834.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 15830-15834
    • Berk, V.1    Zhang, W.2    Pai, R.D.3    Cate, J.H.4
  • 11
    • 0029975088 scopus 로고    scopus 로고
    • SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields
    • Frank J., Radermacher M., Penczek P., Zhu J., Li Y., Ladjadj M., Leith A. SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields. J. Struct. Biol. 1996, 116:190-199.
    • (1996) J. Struct. Biol. , vol.116 , pp. 190-199
    • Frank, J.1    Radermacher, M.2    Penczek, P.3    Zhu, J.4    Li, Y.5    Ladjadj, M.6    Leith, A.7
  • 14
    • 3242886771 scopus 로고    scopus 로고
    • PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
    • Dolinsky T.J., Nielsen J.E., McCammon J.A., Baker N.A. PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations. Nucleic Acids Res. 2004, 32:W665-W667.
    • (2004) Nucleic Acids Res. , vol.32
    • Dolinsky, T.J.1    Nielsen, J.E.2    McCammon, J.A.3    Baker, N.A.4
  • 15
    • 0037224922 scopus 로고    scopus 로고
    • Normal mode analysis with simplified models to investigate the global dynamics of biological systems
    • Tama F. Normal mode analysis with simplified models to investigate the global dynamics of biological systems. Protein Peptide Lett. 2003, 10:119-132.
    • (2003) Protein Peptide Lett. , vol.10 , pp. 119-132
    • Tama, F.1
  • 16
    • 0042424707 scopus 로고    scopus 로고
    • Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy
    • Tama F., Valle M., Frank J., Brooks C.L. Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy. Proc. Natl. Acad. Sci. USA 2003, 100:9319-9323.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9319-9323
    • Tama, F.1    Valle, M.2    Frank, J.3    Brooks, C.L.4
  • 17
    • 33646742004 scopus 로고    scopus 로고
    • Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations
    • Zheng W., Brooks B.R., Thirumalai D. Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations. Proc. Natl. Acad. Sci. USA 2006, 103:7664-7669.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 7664-7669
    • Zheng, W.1    Brooks, B.R.2    Thirumalai, D.3
  • 18
    • 3242875210 scopus 로고    scopus 로고
    • ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement
    • Suhre K., Sanejouand Y.H. ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Res. 2004, 32:W610-W614.
    • (2004) Nucleic Acids Res. , vol.32
    • Suhre, K.1    Sanejouand, Y.H.2
  • 19
    • 0035044995 scopus 로고    scopus 로고
    • Conformational change of proteins arising from normal mode calculations
    • Tama F., Sanejouand Y.H. Conformational change of proteins arising from normal mode calculations. Protein Eng. 2001, 14:1-6.
    • (2001) Protein Eng. , vol.14 , pp. 1-6
    • Tama, F.1    Sanejouand, Y.H.2
  • 20
    • 70350602056 scopus 로고    scopus 로고
    • The structure of the ribosome with elongation factor G trapped in the posttranslocational state
    • Gao Y.G., Selmer M., Dunham C.M., Weixlbaumer A., Kelley A.C., Ramakrishnan V. The structure of the ribosome with elongation factor G trapped in the posttranslocational state. Science 2009, 326:694-699.
    • (2009) Science , vol.326 , pp. 694-699
    • Gao, Y.G.1    Selmer, M.2    Dunham, C.M.3    Weixlbaumer, A.4    Kelley, A.C.5    Ramakrishnan, V.6
  • 21
    • 0034044314 scopus 로고    scopus 로고
    • The PSIPRED protein structure prediction server
    • McGuffin L.J., Bryson K., Jones D.T. The PSIPRED protein structure prediction server. Bioinformatics 2000, 16:404-405.
    • (2000) Bioinformatics , vol.16 , pp. 404-405
    • McGuffin, L.J.1    Bryson, K.2    Jones, D.T.3
  • 22
    • 0037372098 scopus 로고    scopus 로고
    • Prediction of beta-turns in proteins from multiple alignment using neural network
    • Kaur H., Raghava G.P. Prediction of beta-turns in proteins from multiple alignment using neural network. Protein Sci. 2003, 12:627-634.
    • (2003) Protein Sci. , vol.12 , pp. 627-634
    • Kaur, H.1    Raghava, G.P.2
  • 23
    • 69249112231 scopus 로고    scopus 로고
    • Structures of the ribosome in intermediate states of ratcheting
    • Zhang W., Dunkle J.A., Cate J.H. Structures of the ribosome in intermediate states of ratcheting. Science 2009, 325:1014-1017.
    • (2009) Science , vol.325 , pp. 1014-1017
    • Zhang, W.1    Dunkle, J.A.2    Cate, J.H.3
  • 24
    • 0000197372 scopus 로고    scopus 로고
    • Large amplitude elastic motions in proteins from a single-parameter atomic analysis
    • Tirion M.M. Large amplitude elastic motions in proteins from a single-parameter atomic analysis. Phys. Rev. Lett. 1996, 77:1905-1908.
    • (1996) Phys. Rev. Lett. , vol.77 , pp. 1905-1908
    • Tirion, M.M.1
  • 25
    • 0018800283 scopus 로고
    • Identification of fifteen neighboring protein pairs in the Escherichia coli 50 S ribosomal subunit crosslinked with 2-iminothiolane
    • Kenny J.W., Traut R.R. Identification of fifteen neighboring protein pairs in the Escherichia coli 50 S ribosomal subunit crosslinked with 2-iminothiolane. J. Mol. Biol. 1979, 127:243-263.
    • (1979) J. Mol. Biol. , vol.127 , pp. 243-263
    • Kenny, J.W.1    Traut, R.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.