Interaction of translation initiation factor 3 with the 30S ribosomal subunit

Molecular Cell

Volumn 8, Issue 4, 2001, Pages 855-864

  Dallas, Anne ^a   Noller, Harry F ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FERROUS ION; HYDROXYL RADICAL; INITIATION FACTOR; INITIATION FACTOR 3; NUCLEOTIDE; PROTEIN; PROTEIN S11; PROTEIN S7; RNA 16S; RNA 23S; TRANSFER RNA; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; ARTICLE; BINDING SITE; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; CRYSTAL STRUCTURE; GEOBACILLUS STEAROTHERMOPHILUS; NONHUMAN; PEPTIDE MAPPING; PROTEIN DOMAIN; PROTEIN INTERACTION; PROTEIN RNA BINDING; RIBOSOME SUBUNIT;

GEOBACILLUS STEAROTHERMOPHILUS;

EID: 0034759978     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1097-2765(01)00356-2     Document Type: Article

References (51)

1. X-ray crystallography shows that translational initiation factor IF3 consists of two compact alpha/beta domains linked by an alpha-helix
2. Direct cross-links between initiation factors 1, 2, and 3 and ribosomal proteins promoted by 2-iminothiolane
3. Mechanism of translational initiation in prokaryotes. Evidence for a direct effect of IF2 on the activity of the 30 S ribosomal subunit
4. Alternative occupancy of a dual ribosomal binding site by mRNA affected by translation initiation factors
5. Crystal structure of an initiation factor bound to the 30S ribosomal subunit
6. Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics
7. X-ray crystal structures of 70S ribosome functional complexes
8. Photosensitized cross-linking of IF-3 to Escherichia coli 30 S subunits
9. IF-3 crosslinking to Escherichia coli ribosomal 30 S subunits by three different light-dependent procedures: Identification of 30 S proteins crosslinked to IF-3 - Utilization of a new two-stage crosslinking reagent, p-nitrobenzylmaleimide
10. Directed hydroxyl radical probing of RNA from iron(II) tethered to proteins in ribonucleoprotein complexes
11. Structure-function analysis of Escherichia coli translation initiation factor IF3: Tyrosine 107 and lysine 110 are required for ribosome binding
12. Cross-linking of initiation factor IF3 to Escherichia coli 30S ribosomal subunit by trans-diamminedichloroplatinum(II): Characterization of two cross-linking sites in 16S rRNA; a possible way of functioning for IF3
13. 1H and 15N resonance assignments and structure of the N-terminal domain of Escherichia coli initiation factor 3
14. Solution structure of the ribosome-binding domain of E. coli translation initiation factor IF3. Homology with the U1A protein of the eukaryotic spliceosome
15. Light-scattering studies showing the effect of initiation factors on the reversible dissociation of Escherichia coli ribosomes
16. Translation initiation in bacteria
17. Initiation of mRNA translation in prokaryotes
18. Selection of the initiator tRNA by Escherichia coli initiation factors
19. Mapping the inside of the ribosome with an RNA helical ruler
20. Novel roles for classical factors at the interface between translation termination and initiation
21. Rapid and efficient site-specific mutagenesis without phenotypic selection
22. Prokaryotic translation initiation factor IF3 is an elongated protein consisting of two crystallizable domains
23. From stand-by to decoding site. Adjustment of the mRNA on the 30S ribosomal subunit under the influence of the initiation factors
24. Photochemical cross-linking of initiation factor-3 to Escherichia coli 30 S ribosomal subunits
25. Escherichia coli initiator tRNA: Structure-function relationships and interactions with the translational machinery
26. Location of translational initiation factor IF3 on the small ribosomal subunit
27. Discrimination by Escherichia coli initiation factor IF3 against initiation on non-canonical codons relies on complementarity rules
28. Nucleotides in 16S rRNA protected by the association of 30S and 50S ribosomal subunits
29. Binding of tRNA to the ribosomal A and P sites protects two distinct sets of nucleotides in 16 S rRNA
30. Specific protection of 16 S rRNA by translational initiation factors
31. Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension
32. Heteronuclear NMR studies of E. coli translation initiation factor IF3. Evidence that the inter-domain region is disordered in solution
33. Escherichia coli initiation factor 3 protein binding to 30S ribosomal subunits alters the accessibility of nucleotides within the conserved central region of 16S rRNA
34. Recognition of cognate transfer RNA by the 30S ribosomal subunit
35. Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3
36. Hydroxyl radical footprinting of ribosomal proteins on 16S rRNA
37. Specificity and properties of the destabilization, induced by initiation factor IF3, of ternary complexes of the 30S ribosomal subunit, aminoacyl-tRNA and plynucleotides
38. Preparation of radioactive initiation factor 3
39. Mutations that alter initiation codon discrimination by Escherichia coli initiation factor IF3
40. Structure of functionally activated small ribosomal subunit at 3.3 Å resolution
41. Initiation factor 3-induced structural changes in the 30 S ribosomal subunit and in complexes containing tRNA(f)(Met) and mRNA
42. Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension
43. Immunoelectron microscopy of ribosomes
44. Activity of initiation factor F3 in dissociating Escherichia coli ribosomes
45. Escherichia coli translation initiation factor 3 discriminates the initiation codon in vivo
46. Mutation at position 791 in Escherichia coli 16S ribosomal RNA affects processes involved in the initiation of protein synthesis
47. Physical parameters of Escherichia coli translational initiation factor 3 binding to poly(A)
48. Circular dichroism and 500-MHz proton magnetic resonance studies of the interaction of Escherichia coli translational initiation factor 3 protein with the 16S ribosomal RNA 3′ cloacin fragment
49. Structure of the 30S ribosomal subunit
50. Crystal structure of the ribosome at 5.5 Å resolution