-
1
-
-
0034618071
-
Visualization of tRNA movements on the Escherichia coli 70S ribosome during the elongation cycle
-
Agrawal R.K., Spahn C.M., Penczek P., Grassucci R.A., Nierhaus K.H., and Frank J. Visualization of tRNA movements on the Escherichia coli 70S ribosome during the elongation cycle. J. Cell Biol. 150 (2000) 447-460
-
(2000)
J. Cell Biol.
, vol.150
, pp. 447-460
-
-
Agrawal, R.K.1
Spahn, C.M.2
Penczek, P.3
Grassucci, R.A.4
Nierhaus, K.H.5
Frank, J.6
-
2
-
-
33748527208
-
Deletion of a conserved, central ribosomal intersubunit RNA bridge
-
Ali I.K., Lancaster L., Feinberg J., Joseph S., and Noller H.F. Deletion of a conserved, central ribosomal intersubunit RNA bridge. Mol. Cell 23 (2006) 865-874
-
(2006)
Mol. Cell
, vol.23
, pp. 865-874
-
-
Ali, I.K.1
Lancaster, L.2
Feinberg, J.3
Joseph, S.4
Noller, H.F.5
-
3
-
-
0038721061
-
A snoRNA that guides the two most conserved pseudouridine modifications within rRNA confers a growth advantage in yeast
-
Badis G., Fromont-Racine M., and Jacquier A. A snoRNA that guides the two most conserved pseudouridine modifications within rRNA confers a growth advantage in yeast. RNA 9 (2003) 771-779
-
(2003)
RNA
, vol.9
, pp. 771-779
-
-
Badis, G.1
Fromont-Racine, M.2
Jacquier, A.3
-
4
-
-
0027438034
-
Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique
-
Bakin A., and Ofengand J. Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique. Biochemistry 32 (1993) 9754-9762
-
(1993)
Biochemistry
, vol.32
, pp. 9754-9762
-
-
Bakin, A.1
Ofengand, J.2
-
5
-
-
0034637111
-
The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
-
Ban N., Nissen P., Hansen J., Moore P.B., and Steitz T.A. The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science 289 (2000) 905-920
-
(2000)
Science
, vol.289
, pp. 905-920
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Moore, P.B.4
Steitz, T.A.5
-
6
-
-
4544382906
-
The snoRNPs and related machines: ancient devices that mediate maturation of rRNA and other RNAs
-
Olson M.O.J. (Ed), Landes Bioscience Publishing, Georgetown, TX
-
Bertrand E., and Fournier M.J. The snoRNPs and related machines: ancient devices that mediate maturation of rRNA and other RNAs. In: Olson M.O.J. (Ed). The Nucleolus (2004), Landes Bioscience Publishing, Georgetown, TX 225-261
-
(2004)
The Nucleolus
, pp. 225-261
-
-
Bertrand, E.1
Fournier, M.J.2
-
7
-
-
0345276473
-
Functional redundancy of Spb1p and a snR52-dependent mechanism for the 2′-O-ribose methylation of a conserved rRNA position in yeast
-
Bonnerot C., Pintard L., and Lutfalla G. Functional redundancy of Spb1p and a snR52-dependent mechanism for the 2′-O-ribose methylation of a conserved rRNA position in yeast. Mol. Cell 12 (2003) 1309-1315
-
(2003)
Mol. Cell
, vol.12
, pp. 1309-1315
-
-
Bonnerot, C.1
Pintard, L.2
Lutfalla, G.3
-
8
-
-
31144479553
-
Solution structure of psi32-modified anticodon stem-loop of Escherichia coli tRNAPhe
-
Cabello-Villegas J., and Nikonowicz E.P. Solution structure of psi32-modified anticodon stem-loop of Escherichia coli tRNAPhe. Nucleic Acids Res. 33 (2005) 6961-6971
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 6961-6971
-
-
Cabello-Villegas, J.1
Nikonowicz, E.P.2
-
9
-
-
0034685640
-
Translational defects of Escherichia coli mutants deficient in the Um(2552) 23S ribosomal RNA methyltransferase RrmJ/FTSJ
-
Caldas T., Binet E., Bouloc P., and Richarme G. Translational defects of Escherichia coli mutants deficient in the Um(2552) 23S ribosomal RNA methyltransferase RrmJ/FTSJ. Biochem. Biophys. Res. Commun. 271 (2000) 714-718
-
(2000)
Biochem. Biophys. Res. Commun.
, vol.271
, pp. 714-718
-
-
Caldas, T.1
Binet, E.2
Bouloc, P.3
Richarme, G.4
-
10
-
-
0033935223
-
Pseudouridine in RNA: what, where, how, and why
-
Charette M., and Gray M.W. Pseudouridine in RNA: what, where, how, and why. IUBMB Life 49 (2000) 341-351
-
(2000)
IUBMB Life
, vol.49
, pp. 341-351
-
-
Charette, M.1
Gray, M.W.2
-
11
-
-
0029566314
-
Stabilization of RNA stacking by pseudouridine
-
Davis D.R. Stabilization of RNA stacking by pseudouridine. Nucleic Acids Res. 23 (1995) 5020-5026
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 5020-5026
-
-
Davis, D.R.1
-
12
-
-
0036629250
-
rRNA modifications and ribosome function
-
Decatur W.A., and Fournier M.J. rRNA modifications and ribosome function. Trends Biochem. Sci. 27 (2002) 344-351
-
(2002)
Trends Biochem. Sci.
, vol.27
, pp. 344-351
-
-
Decatur, W.A.1
Fournier, M.J.2
-
14
-
-
0036591884
-
Biogenesis of small nucleolar ribonucleoproteins
-
Filipowicz W., and Pogacic V. Biogenesis of small nucleolar ribonucleoproteins. Curr. Opin. Cell Biol. 14 (2002) 319-327
-
(2002)
Curr. Opin. Cell Biol.
, vol.14
, pp. 319-327
-
-
Filipowicz, W.1
Pogacic, V.2
-
15
-
-
0038286524
-
Catalysis of ribosomal translocation by sparsomycin
-
Fredrick K., and Noller H.F. Catalysis of ribosomal translocation by sparsomycin. Science 300 (2003) 1159-1162
-
(2003)
Science
, vol.300
, pp. 1159-1162
-
-
Fredrick, K.1
Noller, H.F.2
-
16
-
-
0038275890
-
Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement
-
Gao H., Sengupta J., Valle M., Korostelev A., Eswar N., Stagg S.M., Van Roey P., Agrawal R.K., Harvey S.C., Sali A., et al. Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement. Cell 113 (2003) 789-801
-
(2003)
Cell
, vol.113
, pp. 789-801
-
-
Gao, H.1
Sengupta, J.2
Valle, M.3
Korostelev, A.4
Eswar, N.5
Stagg, S.M.6
Van Roey, P.7
Agrawal, R.K.8
Harvey, S.C.9
Sali, A.10
-
17
-
-
0037173615
-
Functional profiling of the Saccharomyces cerevisiae genome
-
Giaever G., Chu A.M., Ni L., Connelly C., Riles L., Véronneau S., Dow S., Lucau-Danila A., Anderson K., Andre B., et al. Functional profiling of the Saccharomyces cerevisiae genome. Nature 418 (2002) 387-391
-
(2002)
Nature
, vol.418
, pp. 387-391
-
-
Giaever, G.1
Chu, A.M.2
Ni, L.3
Connelly, C.4
Riles, L.5
Véronneau, S.6
Dow, S.7
Lucau-Danila, A.8
Anderson, K.9
Andre, B.10
-
18
-
-
0034961963
-
A second function for pseudouridine synthases: a point mutant of RluD unable to form pseudouridines 1911, 1915, and 1917 in Escherichia coli 23S ribosomal RNA restores normal growth to an RluD-minus strain
-
Gutgsell N.S., Del Campo M.D., Raychaudhuri S., and Ofengand J. A second function for pseudouridine synthases: a point mutant of RluD unable to form pseudouridines 1911, 1915, and 1917 in Escherichia coli 23S ribosomal RNA restores normal growth to an RluD-minus strain. RNA 7 (2001) 990-998
-
(2001)
RNA
, vol.7
, pp. 990-998
-
-
Gutgsell, N.S.1
Del Campo, M.D.2
Raychaudhuri, S.3
Ofengand, J.4
-
19
-
-
0035977093
-
High-resolution structure of the large ribosomal subunit from a mesophilic eubacterium
-
Harms J., Schluenzen F., Zarivach R., Bashan A., Gat S., Agmon I., Bartels H., Franceschi F., and Yonath A. High-resolution structure of the large ribosomal subunit from a mesophilic eubacterium. Cell 107 (2001) 679-688
-
(2001)
Cell
, vol.107
, pp. 679-688
-
-
Harms, J.1
Schluenzen, F.2
Zarivach, R.3
Bashan, A.4
Gat, S.5
Agmon, I.6
Bartels, H.7
Franceschi, F.8
Yonath, A.9
-
20
-
-
33745205638
-
Conserved loop sequence of helix 69 in Escherichia coli 23 S rRNA is involved in A-site tRNA binding and translational fidelity
-
Hirabayashi N., Sato N.S., and Suzuki T. Conserved loop sequence of helix 69 in Escherichia coli 23 S rRNA is involved in A-site tRNA binding and translational fidelity. J. Biol. Chem. 281 (2006) 17203-17211
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 17203-17211
-
-
Hirabayashi, N.1
Sato, N.S.2
Suzuki, T.3
-
21
-
-
0026524798
-
Conformational rigidity of specific pyrimidine residues in tRNA arises from posttranscriptional modifications that enhance steric interaction between the base and the 2′-hydroxyl group
-
Kawai G., Yamamoto Y., Kamimura T., Masegi T., Sekine M., Hata T., Iimori T., Watanabe T., Miyazawa T., and Yokoyama S. Conformational rigidity of specific pyrimidine residues in tRNA arises from posttranscriptional modifications that enhance steric interaction between the base and the 2′-hydroxyl group. Biochemistry 31 (1992) 1040-1046
-
(1992)
Biochemistry
, vol.31
, pp. 1040-1046
-
-
Kawai, G.1
Yamamoto, Y.2
Kamimura, T.3
Masegi, T.4
Sekine, M.5
Hata, T.6
Iimori, T.7
Watanabe, T.8
Miyazawa, T.9
Yokoyama, S.10
-
22
-
-
0037292453
-
Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center
-
King T.H., Liu B., McCully R.R., and Fournier M.J. Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center. Mol. Cell 11 (2003) 425-435
-
(2003)
Mol. Cell
, vol.11
, pp. 425-435
-
-
King, T.H.1
Liu, B.2
McCully, R.R.3
Fournier, M.J.4
-
23
-
-
0037133942
-
Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions
-
Kiss T. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. Cell 109 (2002) 145-148
-
(2002)
Cell
, vol.109
, pp. 145-148
-
-
Kiss, T.1
-
24
-
-
12344275917
-
Biogenesis of small nuclear RNPs
-
Kiss T. Biogenesis of small nuclear RNPs. J. Cell Sci. 117 (2004) 5949-5951
-
(2004)
J. Cell Sci.
, vol.117
, pp. 5949-5951
-
-
Kiss, T.1
-
25
-
-
37349087176
-
Conserved ribosomal RNA modifications and their putative role in ribosome biogenesis and translation
-
Grosjean H. (Ed), Springer, New York
-
Lapeyre B. Conserved ribosomal RNA modifications and their putative role in ribosome biogenesis and translation. In: Grosjean H. (Ed). Fine-Tuning of RNA Functions by Modification and Editing (2005), Springer, New York 263-284
-
(2005)
Fine-Tuning of RNA Functions by Modification and Editing
, pp. 263-284
-
-
Lapeyre, B.1
-
26
-
-
8844219672
-
Spb1p-directed formation of Gm2922 in the ribosome catalytic center occurs at a late processing stage
-
Lapeyre B., and Purushothaman S.K. Spb1p-directed formation of Gm2922 in the ribosome catalytic center occurs at a late processing stage. Mol. Cell 16 (2004) 663-669
-
(2004)
Mol. Cell
, vol.16
, pp. 663-669
-
-
Lapeyre, B.1
Purushothaman, S.K.2
-
27
-
-
33749588453
-
The helicase Has1p is required for snoRNA release from pre-rRNA
-
Liang X.H., and Fournier M.J. The helicase Has1p is required for snoRNA release from pre-rRNA. Mol. Cell. Biol. 26 (2006) 7437-7450
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 7437-7450
-
-
Liang, X.H.1
Fournier, M.J.2
-
28
-
-
26444611534
-
Analysis of the function of E. coli 23S rRNA helix-loop 69 by mutagenesis
-
10.1186/1471-2199-6-18
-
Liiv A., Karitkina D., Maiväli U., and Remme J. Analysis of the function of E. coli 23S rRNA helix-loop 69 by mutagenesis. BMC Mol. Biol. 6 (2005) 18 10.1186/1471-2199-6-18
-
(2005)
BMC Mol. Biol.
, vol.6
, pp. 18
-
-
Liiv, A.1
Karitkina, D.2
Maiväli, U.3
Remme, J.4
-
30
-
-
19444374397
-
The many facets of H/ACA ribonucleoproteins
-
Meier U.T. The many facets of H/ACA ribonucleoproteins. Chromosoma 114 (2005) 1-14
-
(2005)
Chromosoma
, vol.114
, pp. 1-14
-
-
Meier, U.T.1
-
31
-
-
0026529433
-
Identification of intermolecular RNA cross-links at the subunit interface of the Escherichia coli ribosome
-
Mitchell P., Osswald M., and Brimacombe R. Identification of intermolecular RNA cross-links at the subunit interface of the Escherichia coli ribosome. Biochemistry 31 (1992) 3004-3011
-
(1992)
Biochemistry
, vol.31
, pp. 3004-3011
-
-
Mitchell, P.1
Osswald, M.2
Brimacombe, R.3
-
32
-
-
0024334898
-
Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites
-
Moazed D., and Noller H.F. Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites. Cell 57 (1989) 585-597
-
(1989)
Cell
, vol.57
, pp. 585-597
-
-
Moazed, D.1
Noller, H.F.2
-
33
-
-
0037673518
-
RNA-modifying machines in archaea
-
Omer A.D., Ziesche S., Decatur W.A., Fournier M.J., and Dennis P.P. RNA-modifying machines in archaea. Mol. Microbiol. 48 (2003) 617-629
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 617-629
-
-
Omer, A.D.1
Ziesche, S.2
Decatur, W.A.3
Fournier, M.J.4
Dennis, P.P.5
-
34
-
-
33847270751
-
New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA
-
Piekna-Przybylska D., Decatur W.A., and Fournier M.J. New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. RNA 13 (2007) 305-312
-
(2007)
RNA
, vol.13
, pp. 305-312
-
-
Piekna-Przybylska, D.1
Decatur, W.A.2
Fournier, M.J.3
-
35
-
-
0031787478
-
A pseudouridine synthase required for the formation of two universally conserved pseudouridines in ribosomal RNA is essential for normal growth of Escherichia coli
-
Raychaudhuri S., Conrad J., Hall B.G., and Ofengand J. A pseudouridine synthase required for the formation of two universally conserved pseudouridines in ribosomal RNA is essential for normal growth of Escherichia coli. RNA 4 (1998) 1407-1417
-
(1998)
RNA
, vol.4
, pp. 1407-1417
-
-
Raychaudhuri, S.1
Conrad, J.2
Hall, B.G.3
Ofengand, J.4
-
36
-
-
0032526960
-
The structure of a methylated tetraloop in 16S ribosomal RNA
-
Rife J.P., and Moore P.B. The structure of a methylated tetraloop in 16S ribosomal RNA. Structure 6 (1998) 747-756
-
(1998)
Structure
, vol.6
, pp. 747-756
-
-
Rife, J.P.1
Moore, P.B.2
-
37
-
-
9444251778
-
Cold adaptation in budding yeast
-
Schade B., Jansen G., Whiteway M., Entian K.D., and Thomas D.Y. Cold adaptation in budding yeast. Mol. Biol. Cell 15 (2004) 5492-5502
-
(2004)
Mol. Biol. Cell
, vol.15
, pp. 5492-5502
-
-
Schade, B.1
Jansen, G.2
Whiteway, M.3
Entian, K.D.4
Thomas, D.Y.5
-
38
-
-
0029745623
-
Throwing a spanner in the works: antibiotics and the translation apparatus
-
Spahn C.M., and Prescott C.D. Throwing a spanner in the works: antibiotics and the translation apparatus. J. Mol. Med. 74 (1996) 423-439
-
(1996)
J. Mol. Med.
, vol.74
, pp. 423-439
-
-
Spahn, C.M.1
Prescott, C.D.2
-
39
-
-
24044454056
-
Effects of nucleotide substitution and modification on the stability and structure of helix 69 from 28S rRNA
-
Sumita M., Desaulniers J.P., Chang Y.C., Chui H.M., Clos II L., and Chow C.S. Effects of nucleotide substitution and modification on the stability and structure of helix 69 from 28S rRNA. RNA 11 (2005) 1420-1429
-
(2005)
RNA
, vol.11
, pp. 1420-1429
-
-
Sumita, M.1
Desaulniers, J.P.2
Chang, Y.C.3
Chui, H.M.4
Clos II, L.5
Chow, C.S.6
-
40
-
-
0036176517
-
Small nucleolar RNAs: versatile trans-acting molecules of ancient evolutionary origin
-
Terns M.P., and Terns R.M. Small nucleolar RNAs: versatile trans-acting molecules of ancient evolutionary origin. Gene Expr. 10 (2002) 17-39
-
(2002)
Gene Expr.
, vol.10
, pp. 17-39
-
-
Terns, M.P.1
Terns, R.M.2
-
41
-
-
0027536869
-
Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly
-
Tollervey D., Lehtonen H., Jansen R., Kern H., and Hurt E.C. Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly. Cell 72 (1993) 443-457
-
(1993)
Cell
, vol.72
, pp. 443-457
-
-
Tollervey, D.1
Lehtonen, H.2
Jansen, R.3
Kern, H.4
Hurt, E.C.5
-
42
-
-
3242771427
-
Evolutionary origins of the RNA-guided nucleotide-modification complexes: from the primitive translation apparatus?
-
Tran E., Brown J., and Maxwell E.S. Evolutionary origins of the RNA-guided nucleotide-modification complexes: from the primitive translation apparatus?. Trends Biochem. Sci. 29 (2004) 343-350
-
(2004)
Trends Biochem. Sci.
, vol.29
, pp. 343-350
-
-
Tran, E.1
Brown, J.2
Maxwell, E.S.3
-
43
-
-
0024674170
-
Synthesis of ribosomes in Saccharomyces cerevisiae
-
Warner J.R. Synthesis of ribosomes in Saccharomyces cerevisiae. Microbiol. Rev. 53 (1989) 256-271
-
(1989)
Microbiol. Rev.
, vol.53
, pp. 256-271
-
-
Warner, J.R.1
-
44
-
-
13444306224
-
X-ray crystallography study on ribosome recycling: the mechanism of binding and action of RRF on the 50S ribosomal subunit
-
Wilson D.N., Schluenzen F., Harms J.M., Yoshida T., Ohkubo T., Albrecht R., Buerger J., Kobayashi Y., and Fucini P. X-ray crystallography study on ribosome recycling: the mechanism of binding and action of RRF on the 50S ribosomal subunit. EMBO J. 24 (2005) 251-260
-
(2005)
EMBO J.
, vol.24
, pp. 251-260
-
-
Wilson, D.N.1
Schluenzen, F.2
Harms, J.M.3
Yoshida, T.4
Ohkubo, T.5
Albrecht, R.6
Buerger, J.7
Kobayashi, Y.8
Fucini, P.9
-
45
-
-
18844369530
-
Mechanisms and functions of RNA guided RNA modifications
-
Grosjean H. (Ed), Springer, New York
-
Yu Y.T., Terns R.M., and Terns M.P. Mechanisms and functions of RNA guided RNA modifications. In: Grosjean H. (Ed). Fine-Tuning of RNA Functions by Modification and Editing (2005), Springer, New York 223-262
-
(2005)
Fine-Tuning of RNA Functions by Modification and Editing
, pp. 223-262
-
-
Yu, Y.T.1
Terns, R.M.2
Terns, M.P.3
-
46
-
-
0035805213
-
Crystal structure of the ribosome at 5.5 Å resolution
-
Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H., and Noller H.F. Crystal structure of the ribosome at 5.5 Å resolution. Science 292 (2001) 883-896
-
(2001)
Science
, vol.292
, pp. 883-896
-
-
Yusupov, M.M.1
Yusupova, G.Z.2
Baucom, A.3
Lieberman, K.4
Earnest, T.N.5
Cate, J.H.6
Noller, H.F.7
-
47
-
-
0032718276
-
Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA
-
Zebarjadian Y., King T., Fournier M.J., Clarke L., and Carbon J. Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA. Mol. Cell. Biol. 19 (1999) 7461-7472
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 7461-7472
-
-
Zebarjadian, Y.1
King, T.2
Fournier, M.J.3
Clarke, L.4
Carbon, J.5
|