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Volumn 28, Issue 6, 2007, Pages 965-977

rRNA Modifications in an Intersubunit Bridge of the Ribosome Strongly Affect Both Ribosome Biogenesis and Activity

Author keywords

RNA

Indexed keywords

AMINO ACID; ANTIBIOTIC AGENT; RIBOSOME RNA; TRANSFER RNA;

EID: 37349128219     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molcel.2007.10.012     Document Type: Article
Times cited : (183)

References (47)
  • 1
    • 0034618071 scopus 로고    scopus 로고
    • Visualization of tRNA movements on the Escherichia coli 70S ribosome during the elongation cycle
    • Agrawal R.K., Spahn C.M., Penczek P., Grassucci R.A., Nierhaus K.H., and Frank J. Visualization of tRNA movements on the Escherichia coli 70S ribosome during the elongation cycle. J. Cell Biol. 150 (2000) 447-460
    • (2000) J. Cell Biol. , vol.150 , pp. 447-460
    • Agrawal, R.K.1    Spahn, C.M.2    Penczek, P.3    Grassucci, R.A.4    Nierhaus, K.H.5    Frank, J.6
  • 2
    • 33748527208 scopus 로고    scopus 로고
    • Deletion of a conserved, central ribosomal intersubunit RNA bridge
    • Ali I.K., Lancaster L., Feinberg J., Joseph S., and Noller H.F. Deletion of a conserved, central ribosomal intersubunit RNA bridge. Mol. Cell 23 (2006) 865-874
    • (2006) Mol. Cell , vol.23 , pp. 865-874
    • Ali, I.K.1    Lancaster, L.2    Feinberg, J.3    Joseph, S.4    Noller, H.F.5
  • 3
    • 0038721061 scopus 로고    scopus 로고
    • A snoRNA that guides the two most conserved pseudouridine modifications within rRNA confers a growth advantage in yeast
    • Badis G., Fromont-Racine M., and Jacquier A. A snoRNA that guides the two most conserved pseudouridine modifications within rRNA confers a growth advantage in yeast. RNA 9 (2003) 771-779
    • (2003) RNA , vol.9 , pp. 771-779
    • Badis, G.1    Fromont-Racine, M.2    Jacquier, A.3
  • 4
    • 0027438034 scopus 로고
    • Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique
    • Bakin A., and Ofengand J. Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique. Biochemistry 32 (1993) 9754-9762
    • (1993) Biochemistry , vol.32 , pp. 9754-9762
    • Bakin, A.1    Ofengand, J.2
  • 5
    • 0034637111 scopus 로고    scopus 로고
    • The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
    • Ban N., Nissen P., Hansen J., Moore P.B., and Steitz T.A. The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science 289 (2000) 905-920
    • (2000) Science , vol.289 , pp. 905-920
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Moore, P.B.4    Steitz, T.A.5
  • 6
    • 4544382906 scopus 로고    scopus 로고
    • The snoRNPs and related machines: ancient devices that mediate maturation of rRNA and other RNAs
    • Olson M.O.J. (Ed), Landes Bioscience Publishing, Georgetown, TX
    • Bertrand E., and Fournier M.J. The snoRNPs and related machines: ancient devices that mediate maturation of rRNA and other RNAs. In: Olson M.O.J. (Ed). The Nucleolus (2004), Landes Bioscience Publishing, Georgetown, TX 225-261
    • (2004) The Nucleolus , pp. 225-261
    • Bertrand, E.1    Fournier, M.J.2
  • 7
    • 0345276473 scopus 로고    scopus 로고
    • Functional redundancy of Spb1p and a snR52-dependent mechanism for the 2′-O-ribose methylation of a conserved rRNA position in yeast
    • Bonnerot C., Pintard L., and Lutfalla G. Functional redundancy of Spb1p and a snR52-dependent mechanism for the 2′-O-ribose methylation of a conserved rRNA position in yeast. Mol. Cell 12 (2003) 1309-1315
    • (2003) Mol. Cell , vol.12 , pp. 1309-1315
    • Bonnerot, C.1    Pintard, L.2    Lutfalla, G.3
  • 8
    • 31144479553 scopus 로고    scopus 로고
    • Solution structure of psi32-modified anticodon stem-loop of Escherichia coli tRNAPhe
    • Cabello-Villegas J., and Nikonowicz E.P. Solution structure of psi32-modified anticodon stem-loop of Escherichia coli tRNAPhe. Nucleic Acids Res. 33 (2005) 6961-6971
    • (2005) Nucleic Acids Res. , vol.33 , pp. 6961-6971
    • Cabello-Villegas, J.1    Nikonowicz, E.P.2
  • 9
    • 0034685640 scopus 로고    scopus 로고
    • Translational defects of Escherichia coli mutants deficient in the Um(2552) 23S ribosomal RNA methyltransferase RrmJ/FTSJ
    • Caldas T., Binet E., Bouloc P., and Richarme G. Translational defects of Escherichia coli mutants deficient in the Um(2552) 23S ribosomal RNA methyltransferase RrmJ/FTSJ. Biochem. Biophys. Res. Commun. 271 (2000) 714-718
    • (2000) Biochem. Biophys. Res. Commun. , vol.271 , pp. 714-718
    • Caldas, T.1    Binet, E.2    Bouloc, P.3    Richarme, G.4
  • 10
    • 0033935223 scopus 로고    scopus 로고
    • Pseudouridine in RNA: what, where, how, and why
    • Charette M., and Gray M.W. Pseudouridine in RNA: what, where, how, and why. IUBMB Life 49 (2000) 341-351
    • (2000) IUBMB Life , vol.49 , pp. 341-351
    • Charette, M.1    Gray, M.W.2
  • 11
    • 0029566314 scopus 로고
    • Stabilization of RNA stacking by pseudouridine
    • Davis D.R. Stabilization of RNA stacking by pseudouridine. Nucleic Acids Res. 23 (1995) 5020-5026
    • (1995) Nucleic Acids Res. , vol.23 , pp. 5020-5026
    • Davis, D.R.1
  • 12
    • 0036629250 scopus 로고    scopus 로고
    • rRNA modifications and ribosome function
    • Decatur W.A., and Fournier M.J. rRNA modifications and ribosome function. Trends Biochem. Sci. 27 (2002) 344-351
    • (2002) Trends Biochem. Sci. , vol.27 , pp. 344-351
    • Decatur, W.A.1    Fournier, M.J.2
  • 14
    • 0036591884 scopus 로고    scopus 로고
    • Biogenesis of small nucleolar ribonucleoproteins
    • Filipowicz W., and Pogacic V. Biogenesis of small nucleolar ribonucleoproteins. Curr. Opin. Cell Biol. 14 (2002) 319-327
    • (2002) Curr. Opin. Cell Biol. , vol.14 , pp. 319-327
    • Filipowicz, W.1    Pogacic, V.2
  • 15
    • 0038286524 scopus 로고    scopus 로고
    • Catalysis of ribosomal translocation by sparsomycin
    • Fredrick K., and Noller H.F. Catalysis of ribosomal translocation by sparsomycin. Science 300 (2003) 1159-1162
    • (2003) Science , vol.300 , pp. 1159-1162
    • Fredrick, K.1    Noller, H.F.2
  • 18
    • 0034961963 scopus 로고    scopus 로고
    • A second function for pseudouridine synthases: a point mutant of RluD unable to form pseudouridines 1911, 1915, and 1917 in Escherichia coli 23S ribosomal RNA restores normal growth to an RluD-minus strain
    • Gutgsell N.S., Del Campo M.D., Raychaudhuri S., and Ofengand J. A second function for pseudouridine synthases: a point mutant of RluD unable to form pseudouridines 1911, 1915, and 1917 in Escherichia coli 23S ribosomal RNA restores normal growth to an RluD-minus strain. RNA 7 (2001) 990-998
    • (2001) RNA , vol.7 , pp. 990-998
    • Gutgsell, N.S.1    Del Campo, M.D.2    Raychaudhuri, S.3    Ofengand, J.4
  • 20
    • 33745205638 scopus 로고    scopus 로고
    • Conserved loop sequence of helix 69 in Escherichia coli 23 S rRNA is involved in A-site tRNA binding and translational fidelity
    • Hirabayashi N., Sato N.S., and Suzuki T. Conserved loop sequence of helix 69 in Escherichia coli 23 S rRNA is involved in A-site tRNA binding and translational fidelity. J. Biol. Chem. 281 (2006) 17203-17211
    • (2006) J. Biol. Chem. , vol.281 , pp. 17203-17211
    • Hirabayashi, N.1    Sato, N.S.2    Suzuki, T.3
  • 21
    • 0026524798 scopus 로고
    • Conformational rigidity of specific pyrimidine residues in tRNA arises from posttranscriptional modifications that enhance steric interaction between the base and the 2′-hydroxyl group
    • Kawai G., Yamamoto Y., Kamimura T., Masegi T., Sekine M., Hata T., Iimori T., Watanabe T., Miyazawa T., and Yokoyama S. Conformational rigidity of specific pyrimidine residues in tRNA arises from posttranscriptional modifications that enhance steric interaction between the base and the 2′-hydroxyl group. Biochemistry 31 (1992) 1040-1046
    • (1992) Biochemistry , vol.31 , pp. 1040-1046
    • Kawai, G.1    Yamamoto, Y.2    Kamimura, T.3    Masegi, T.4    Sekine, M.5    Hata, T.6    Iimori, T.7    Watanabe, T.8    Miyazawa, T.9    Yokoyama, S.10
  • 22
    • 0037292453 scopus 로고    scopus 로고
    • Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center
    • King T.H., Liu B., McCully R.R., and Fournier M.J. Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center. Mol. Cell 11 (2003) 425-435
    • (2003) Mol. Cell , vol.11 , pp. 425-435
    • King, T.H.1    Liu, B.2    McCully, R.R.3    Fournier, M.J.4
  • 23
    • 0037133942 scopus 로고    scopus 로고
    • Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions
    • Kiss T. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. Cell 109 (2002) 145-148
    • (2002) Cell , vol.109 , pp. 145-148
    • Kiss, T.1
  • 24
    • 12344275917 scopus 로고    scopus 로고
    • Biogenesis of small nuclear RNPs
    • Kiss T. Biogenesis of small nuclear RNPs. J. Cell Sci. 117 (2004) 5949-5951
    • (2004) J. Cell Sci. , vol.117 , pp. 5949-5951
    • Kiss, T.1
  • 25
    • 37349087176 scopus 로고    scopus 로고
    • Conserved ribosomal RNA modifications and their putative role in ribosome biogenesis and translation
    • Grosjean H. (Ed), Springer, New York
    • Lapeyre B. Conserved ribosomal RNA modifications and their putative role in ribosome biogenesis and translation. In: Grosjean H. (Ed). Fine-Tuning of RNA Functions by Modification and Editing (2005), Springer, New York 263-284
    • (2005) Fine-Tuning of RNA Functions by Modification and Editing , pp. 263-284
    • Lapeyre, B.1
  • 26
    • 8844219672 scopus 로고    scopus 로고
    • Spb1p-directed formation of Gm2922 in the ribosome catalytic center occurs at a late processing stage
    • Lapeyre B., and Purushothaman S.K. Spb1p-directed formation of Gm2922 in the ribosome catalytic center occurs at a late processing stage. Mol. Cell 16 (2004) 663-669
    • (2004) Mol. Cell , vol.16 , pp. 663-669
    • Lapeyre, B.1    Purushothaman, S.K.2
  • 27
    • 33749588453 scopus 로고    scopus 로고
    • The helicase Has1p is required for snoRNA release from pre-rRNA
    • Liang X.H., and Fournier M.J. The helicase Has1p is required for snoRNA release from pre-rRNA. Mol. Cell. Biol. 26 (2006) 7437-7450
    • (2006) Mol. Cell. Biol. , vol.26 , pp. 7437-7450
    • Liang, X.H.1    Fournier, M.J.2
  • 28
    • 26444611534 scopus 로고    scopus 로고
    • Analysis of the function of E. coli 23S rRNA helix-loop 69 by mutagenesis
    • 10.1186/1471-2199-6-18
    • Liiv A., Karitkina D., Maiväli U., and Remme J. Analysis of the function of E. coli 23S rRNA helix-loop 69 by mutagenesis. BMC Mol. Biol. 6 (2005) 18 10.1186/1471-2199-6-18
    • (2005) BMC Mol. Biol. , vol.6 , pp. 18
    • Liiv, A.1    Karitkina, D.2    Maiväli, U.3    Remme, J.4
  • 30
    • 19444374397 scopus 로고    scopus 로고
    • The many facets of H/ACA ribonucleoproteins
    • Meier U.T. The many facets of H/ACA ribonucleoproteins. Chromosoma 114 (2005) 1-14
    • (2005) Chromosoma , vol.114 , pp. 1-14
    • Meier, U.T.1
  • 31
    • 0026529433 scopus 로고
    • Identification of intermolecular RNA cross-links at the subunit interface of the Escherichia coli ribosome
    • Mitchell P., Osswald M., and Brimacombe R. Identification of intermolecular RNA cross-links at the subunit interface of the Escherichia coli ribosome. Biochemistry 31 (1992) 3004-3011
    • (1992) Biochemistry , vol.31 , pp. 3004-3011
    • Mitchell, P.1    Osswald, M.2    Brimacombe, R.3
  • 32
    • 0024334898 scopus 로고
    • Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites
    • Moazed D., and Noller H.F. Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites. Cell 57 (1989) 585-597
    • (1989) Cell , vol.57 , pp. 585-597
    • Moazed, D.1    Noller, H.F.2
  • 34
    • 33847270751 scopus 로고    scopus 로고
    • New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA
    • Piekna-Przybylska D., Decatur W.A., and Fournier M.J. New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. RNA 13 (2007) 305-312
    • (2007) RNA , vol.13 , pp. 305-312
    • Piekna-Przybylska, D.1    Decatur, W.A.2    Fournier, M.J.3
  • 35
    • 0031787478 scopus 로고    scopus 로고
    • A pseudouridine synthase required for the formation of two universally conserved pseudouridines in ribosomal RNA is essential for normal growth of Escherichia coli
    • Raychaudhuri S., Conrad J., Hall B.G., and Ofengand J. A pseudouridine synthase required for the formation of two universally conserved pseudouridines in ribosomal RNA is essential for normal growth of Escherichia coli. RNA 4 (1998) 1407-1417
    • (1998) RNA , vol.4 , pp. 1407-1417
    • Raychaudhuri, S.1    Conrad, J.2    Hall, B.G.3    Ofengand, J.4
  • 36
    • 0032526960 scopus 로고    scopus 로고
    • The structure of a methylated tetraloop in 16S ribosomal RNA
    • Rife J.P., and Moore P.B. The structure of a methylated tetraloop in 16S ribosomal RNA. Structure 6 (1998) 747-756
    • (1998) Structure , vol.6 , pp. 747-756
    • Rife, J.P.1    Moore, P.B.2
  • 38
    • 0029745623 scopus 로고    scopus 로고
    • Throwing a spanner in the works: antibiotics and the translation apparatus
    • Spahn C.M., and Prescott C.D. Throwing a spanner in the works: antibiotics and the translation apparatus. J. Mol. Med. 74 (1996) 423-439
    • (1996) J. Mol. Med. , vol.74 , pp. 423-439
    • Spahn, C.M.1    Prescott, C.D.2
  • 39
    • 24044454056 scopus 로고    scopus 로고
    • Effects of nucleotide substitution and modification on the stability and structure of helix 69 from 28S rRNA
    • Sumita M., Desaulniers J.P., Chang Y.C., Chui H.M., Clos II L., and Chow C.S. Effects of nucleotide substitution and modification on the stability and structure of helix 69 from 28S rRNA. RNA 11 (2005) 1420-1429
    • (2005) RNA , vol.11 , pp. 1420-1429
    • Sumita, M.1    Desaulniers, J.P.2    Chang, Y.C.3    Chui, H.M.4    Clos II, L.5    Chow, C.S.6
  • 40
    • 0036176517 scopus 로고    scopus 로고
    • Small nucleolar RNAs: versatile trans-acting molecules of ancient evolutionary origin
    • Terns M.P., and Terns R.M. Small nucleolar RNAs: versatile trans-acting molecules of ancient evolutionary origin. Gene Expr. 10 (2002) 17-39
    • (2002) Gene Expr. , vol.10 , pp. 17-39
    • Terns, M.P.1    Terns, R.M.2
  • 41
    • 0027536869 scopus 로고
    • Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly
    • Tollervey D., Lehtonen H., Jansen R., Kern H., and Hurt E.C. Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly. Cell 72 (1993) 443-457
    • (1993) Cell , vol.72 , pp. 443-457
    • Tollervey, D.1    Lehtonen, H.2    Jansen, R.3    Kern, H.4    Hurt, E.C.5
  • 42
    • 3242771427 scopus 로고    scopus 로고
    • Evolutionary origins of the RNA-guided nucleotide-modification complexes: from the primitive translation apparatus?
    • Tran E., Brown J., and Maxwell E.S. Evolutionary origins of the RNA-guided nucleotide-modification complexes: from the primitive translation apparatus?. Trends Biochem. Sci. 29 (2004) 343-350
    • (2004) Trends Biochem. Sci. , vol.29 , pp. 343-350
    • Tran, E.1    Brown, J.2    Maxwell, E.S.3
  • 43
    • 0024674170 scopus 로고
    • Synthesis of ribosomes in Saccharomyces cerevisiae
    • Warner J.R. Synthesis of ribosomes in Saccharomyces cerevisiae. Microbiol. Rev. 53 (1989) 256-271
    • (1989) Microbiol. Rev. , vol.53 , pp. 256-271
    • Warner, J.R.1
  • 44
  • 47
    • 0032718276 scopus 로고    scopus 로고
    • Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA
    • Zebarjadian Y., King T., Fournier M.J., Clarke L., and Carbon J. Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA. Mol. Cell. Biol. 19 (1999) 7461-7472
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 7461-7472
    • Zebarjadian, Y.1    King, T.2    Fournier, M.J.3    Clarke, L.4    Carbon, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.