메뉴 건너뛰기




Volumn 16, Issue 10, 2010, Pages 1925-1934

Missense suppressor mutations in 16S rRNA reveal the importance of helices h8 and h14 in aminoacyl-tRNA selection

Author keywords

Decoding; EF Tu; GTPase; Ribosome; Translation

Indexed keywords

AMINOACYL TRANSFER RNA; RNA 16S; BACTERIAL RNA; STOP CODON;

EID: 77957320587     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.2228510     Document Type: Article
Times cited : (47)

References (52)
  • 1
    • 27144439460 scopus 로고    scopus 로고
    • Contribution of 16S rRNA nucleotides forming the 30S subunit a and P sites to translation in Escherichia coli
    • DOI 10.1261/rna.2118105
    • Abdi NM, Fredrick K. 2005. Contribution of 16S rRNA nucleotides forming the 30S subunit A and P sites to translation in Escherichia coli. RNA 11: 1624-1632. (Pubitemid 41505536)
    • (2005) RNA , vol.11 , Issue.11 , pp. 1624-1632
    • Abdi, N.M.1    Fredrick, K.2
  • 2
    • 0025799516 scopus 로고
    • A single base substitution in 16S ribosomal RNA suppresses streptomycin dependence and increases the frequency of translational errors
    • Allen PN, Noller HF. 1991. A single base substitution in 16S ribosomal RNA suppresses streptomycin dependence and increases the frequency of translational errors. Cell 66: 141-148.
    • (1991) Cell , vol.66 , pp. 141-148
    • Allen, P.N.1    Noller, H.F.2
  • 4
    • 17844395239 scopus 로고    scopus 로고
    • Dissecting eukaryotic translation and its control by ribosome density mapping
    • DOI 10.1093/nar/gki331
    • Arava Y, Boas FE, Brown PO, Herschlag D. 2005. Dissecting eukaryotic translation and its control by ribosome density mapping. Nucleic Acids Res 33: 2421-2432. (Pubitemid 41511261)
    • (2005) Nucleic Acids Research , vol.33 , Issue.8 , pp. 2421-2432
    • Arava, Y.1    Boas, F.E.2    Brown, P.O.3    Herschlag, D.4
  • 5
    • 0032473357 scopus 로고    scopus 로고
    • Mutations in RNAs of both ribosomal subunits cause defects in translation termination
    • Arkov AL, Freistroffer DV, Ehrenberg M, Murgola EJ. 1998. Mutations in RNAs of both ribosomal subunits cause defects in translation termination. EMBO J 17: 1507-1514.
    • (1998) EMBO J , vol.17 , pp. 1507-1514
    • Arkov, A.L.1    Freistroffer, D.V.2    Ehrenberg, M.3    Murgola, E.J.4
  • 6
    • 0032896612 scopus 로고    scopus 로고
    • Novel ribosomal mutations affecting translational accuracy, antibiotic resistance, and virulence of Salmonella typhimurium
    • Bjorkman J, Samuelsson P, Andersson DI, Hughes D. 1999. Novel ribosomal mutations affecting translational accuracy, antibiotic resistance, and virulence of Salmonella typhimurium. Mol Microbiol 31: 53-58.
    • (1999) Mol Microbiol , vol.31 , pp. 53-58
    • Bjorkman, J.1    Samuelsson, P.2    Andersson, D.I.3    Hughes, D.4
  • 7
    • 0016652386 scopus 로고
    • Alteration of ribosomal protein S17 by mutation linked to neamine resistance in Escherichia coli. I. General properties of neaA mutants
    • Bollen A, Cabezon T, de Wilde M, Villarroel R, Herzog A. 1975. Alteration of ribosomal protein S17 by mutation linked to neamine resistance in Escherichia coli. I. General properties of neaA mutants. J Mol Biol 99: 795-806.
    • (1975) J Mol Biol , vol.99 , pp. 795-806
    • Bollen, A.1    Cabezon, T.2    De Wilde, M.3    Villarroel, R.4    Herzog, A.5
  • 8
    • 0030006310 scopus 로고    scopus 로고
    • The translational function of nucleotide C1054 in the small subunit rRNA is conserved throughout evolution: Genetic evidence in yeast
    • Chernoff YO, Newnam GP, Liebman SW. 1996. The translational function of nucleotide C1054 in the small subunit rRNA is conserved throughout evolution: Genetic evidence in yeast. Proc Natl Acad Sci 93: 2517-2522.
    • (1996) Proc Natl Acad Sci , vol.93 , pp. 2517-2522
    • Chernoff, Y.O.1    Newnam, G.P.2    Liebman, S.W.3
  • 9
    • 0023806551 scopus 로고
    • Effects of amino acid substitutions at the active site in Escherichia coli b-galactosidase
    • Cupples CG, Miller JH. 1988. Effects of amino acid substitutions at the active site in Escherichia coli b-galactosidase. Genetics 120: 637-644.
    • (1988) Genetics , vol.120 , pp. 637-644
    • Cupples, C.G.1    Miller, J.H.2
  • 10
    • 0345549815 scopus 로고
    • A set of lacZ mutations in Escherichia coli that allow rapid detection of each of the six base substitutions
    • Cupples CG, Miller JH. 1989. A set of lacZ mutations in Escherichia coli that allow rapid detection of each of the six base substitutions. Proc Natl Acad Sci 86: 5345-5349.
    • (1989) Proc Natl Acad Sci , vol.86 , pp. 5345-5349
    • Cupples, C.G.1    Miller, J.H.2
  • 11
    • 0025231773 scopus 로고
    • Determination of the roles of Glu-461 in β-galactosidase (Escherichia coli) using site-specific mutagenesis
    • Cupples CG, Miller JH, Huber RE. 1990. Determination of the roles of Glu-461 in β-galactosidase (Escherichia coli) using site-specific mutagenesis. J Biol Chem 265: 5512-5518.
    • (1990) J Biol Chem , vol.265 , pp. 5512-5518
    • Cupples, C.G.1    Miller, J.H.2    Huber, R.E.3
  • 12
    • 0033814232 scopus 로고    scopus 로고
    • A novel mutation in ribosomal protein S4 that affects the function of a mutated RF1
    • Dahlgren A, Ryden-Aulin M. 2000. A novel mutation in ribosomal protein S4 that affects the function of a mutated RF1. Biochimie 82: 683-691.
    • (2000) Biochimie , vol.82 , pp. 683-691
    • Dahlgren, A.1    Ryden-Aulin, M.2
  • 13
    • 0000332840 scopus 로고
    • Design and use of a fast and accurate in vitro translation system
    • (ed. G Spedding), IRL Press, Oxford, UK
    • Ehrenberg M, Bilgin N, Kurland CG. 1990. Design and use of a fast and accurate in vitro translation system. In Ribosomes and protein synthesis, (ed. G Spedding), pp. 101-129. IRL Press, Oxford, UK.
    • (1990) Ribosomes and Protein Synthesis , pp. 101-129
    • Ehrenberg, M.1    Bilgin, N.2    Kurland, C.G.3
  • 14
    • 0028856760 scopus 로고
    • Nonsense suppressor and antisuppressor mutations at the 1409-1491 base pair in the decoding region of Escherichia coli 16S rRNA
    • Gregory ST, Dahlberg AE. 1995. Nonsense suppressor and antisuppressor mutations at the 1409-1491 base pair in the decoding region of Escherichia coli 16S rRNA. Nucleic Acids Res 23: 4234-4238.
    • (1995) Nucleic Acids Res , vol.23 , pp. 4234-4238
    • Gregory, S.T.1    Dahlberg, A.E.2
  • 15
    • 0842267211 scopus 로고    scopus 로고
    • Kinetic determinants of high-fidelity tRNA discrimination on the ribosome
    • Gromadski KB, Rodnina MV. 2004. Kinetic determinants of high-fidelity tRNA discrimination on the ribosome. Mol Cell 13: 191-200.
    • (2004) Mol Cell , vol.13 , pp. 191-200
    • Gromadski, K.B.1    Rodnina, M.V.2
  • 16
    • 31544454704 scopus 로고    scopus 로고
    • A uniform response to mismatches in codon-anticodon complexes ensures ribosomal fidelity
    • Gromadski KB, Daviter T, Rodnina MV. 2006. A uniform response to mismatches in codon-anticodon complexes ensures ribosomal fidelity. Mol Cell 21: 369-377.
    • (2006) Mol Cell , vol.21 , pp. 369-377
    • Gromadski, K.B.1    Daviter, T.2    Rodnina, M.V.3
  • 17
    • 0025016539 scopus 로고
    • The involvement of base 1054 in 16S rRNA for UGA stop codon dependent translational termination
    • Hanfler A, Kleuvers B, Goringer HU. 1990. The involvement of base 1054 in 16S rRNA for UGA stop codon dependent translational termination. Nucleic Acids Res 18: 5625-5632. (Pubitemid 120029328)
    • (1990) Nucleic Acids Research , vol.18 , Issue.19 , pp. 5625-5632
    • Hanfler, A.1    Kleuvers, B.2    Goringer, H.U.3
  • 19
    • 33845895536 scopus 로고    scopus 로고
    • The frequency of translational misreading errors in E. coli is largely determined by tRNA competition
    • Kramer EB, Farabaugh PJ. 2007. The frequency of translational misreading errors in E. coli is largely determined by tRNA competition. RNA 13: 87-96.
    • (2007) RNA , vol.13 , pp. 87-96
    • Kramer, E.B.1    Farabaugh, P.J.2
  • 21
    • 46149104347 scopus 로고    scopus 로고
    • Different aa-tRNAs Are Selected Uniformly on the Ribosome
    • DOI 10.1016/j.molcel.2008.04.026, PII S1097276508003353
    • Ledoux S, Uhlenbeck OC. 2008. Different aa-tRNAs are selected uniformly on the ribosome. Mol Cell 31: 114-123. (Pubitemid 351905919)
    • (2008) Molecular Cell , vol.31 , Issue.1 , pp. 114-123
    • Ledoux, S.1    Uhlenbeck, O.C.2
  • 23
    • 35548938590 scopus 로고    scopus 로고
    • Phenylalanyl-tRNA synthetase editing defects result in efficient mistranslation of phenylalanine codons as tyrosine
    • Ling J, Yadavalli SS, Ibba M. 2007. Phenylalanyl-tRNA synthetase editing defects result in efficient mistranslation of phenylalanine codons as tyrosine. RNA 13: 1881-1886.
    • (2007) RNA , vol.13 , pp. 1881-1886
    • Ling, J.1    Yadavalli, S.S.2    Ibba, M.3
  • 24
    • 0030806152 scopus 로고    scopus 로고
    • A conformational switch in Escherichia coli 16S ribosomal RNA during decoding of messenger RNA
    • Lodmell JS, Dahlberg AE. 1997. A conformational switch in Escherichia coli 16S ribosomal RNA during decoding of messenger RNA. Science 277: 1262-1267.
    • (1997) Science , vol.277 , pp. 1262-1267
    • Lodmell, J.S.1    Dahlberg, A.E.2
  • 25
    • 0036431723 scopus 로고    scopus 로고
    • Compensatory adaptation to the deleterious effect of antibiotic resistance in Salmonella typhimurium
    • Maisnier-Patin S, Berg OG, Liljas L, Andersson DI. 2002. Compensatory adaptation to the deleterious effect of antibiotic resistance in Salmonella typhimurium. Mol Microbiol 46: 355-366.
    • (2002) Mol Microbiol , vol.46 , pp. 355-366
    • Maisnier-Patin, S.1    Berg, O.G.2    Liljas, L.3    Andersson, D.I.4
  • 26
    • 33846317719 scopus 로고    scopus 로고
    • Compensatory evolution reveals functional interactions between ribosomal proteins S12, L14, and L19
    • Maisnier-Patin S, Paulander W, Pennhag A, Andersson DI. 2007. Compensatory evolution reveals functional interactions between ribosomal proteins S12, L14, and L19. J Mol Biol 366: 207-215.
    • (2007) J Mol Biol , vol.366 , pp. 207-215
    • Maisnier-Patin, S.1    Paulander, W.2    Pennhag, A.3    Andersson, D.I.4
  • 27
    • 49349113285 scopus 로고    scopus 로고
    • Ribosome collisions and translation efficiency: Optimization by codon usage and mRNA destabilization
    • Mitarai N, Sneppen K, Pedersen S. 2008. Ribosome collisions and translation efficiency: Optimization by codon usage and mRNA destabilization. J Mol Biol 382: 236-245.
    • (2008) J Mol Biol , vol.382 , pp. 236-245
    • Mitarai, N.1    Sneppen, K.2    Pedersen, S.3
  • 28
    • 0027988206 scopus 로고
    • Mutations in helix 34 of Escherichia coli 16 S ribosomal RNA have multiple effects on ribosome function and synthesis
    • DOI 10.1006/jmbi.1994.1668
    • Moine H, Dahlberg AE. 1994. Mutations in helix 34 of Escherichia coli 16 S ribosomal RNA have multiple effects on ribosome function and synthesis. J Mol Biol 243: 402-412. (Pubitemid 24336986)
    • (1994) Journal of Molecular Biology , vol.243 , Issue.3 , pp. 402-412
    • Moine, H.1    Dahlberg, A.E.2
  • 29
    • 0029403107 scopus 로고
    • Variety of nonsense suppressor phenotypes associated with mutational changes at conserved sites in Escherichia coli ribosomal RNA
    • Murgola EJ, Pagel FT, Hijazi KA, Arkov AL, Xu W, Zhao SQ. 1995. Variety of nonsense suppressor phenotypes associated with mutational changes at conserved sites in Escherichia coli ribosomal RNA. Biochem Cell Biol 73: 925-931.
    • (1995) Biochem Cell Biol , vol.73 , pp. 925-931
    • Murgola, E.J.1    Pagel, F.T.2    Hijazi, K.A.3    Arkov, A.L.4    Xu, W.5    Zhao, S.Q.6
  • 30
    • 18844413446 scopus 로고    scopus 로고
    • Structural insights into translational fidelity
    • Ogle JM, Ramakrishnan V. 2005. Structural insights into translational fidelity. Annu Rev Biochem 74: 129-177.
    • (2005) Annu Rev Biochem , vol.74 , pp. 129-177
    • Ogle, J.M.1    Ramakrishnan, V.2
  • 32
    • 0037184536 scopus 로고    scopus 로고
    • Selection of tRNA by the ribosome requires a transition from an open to a closed form
    • Ogle JM, Murphy FV, Tarry MJ, Ramakrishnan V. 2002. Selection of tRNA by the ribosome requires a transition from an open to a closed form. Cell 111: 721-732.
    • (2002) Cell , vol.111 , pp. 721-732
    • Ogle, J.M.1    Murphy, F.V.2    Tarry, M.J.3    Ramakrishnan, V.4
  • 33
    • 0031576998 scopus 로고    scopus 로고
    • Phenotypic heterogeneity of mutational changes at a conserved nucleotide in 16 S ribosomal RNA
    • Pagel FT, Zhao SQ, Hijazi KA, Murgola EJ. 1997. Phenotypic heterogeneity of mutational changes at a conserved nucleotide in 16 S ribosomal RNA. J Mol Biol 267: 1113-1123.
    • (1997) J Mol Biol , vol.267 , pp. 1113-1123
    • Pagel, F.T.1    Zhao, S.Q.2    Hijazi, K.A.3    Murgola, E.J.4
  • 34
    • 0032535207 scopus 로고    scopus 로고
    • Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the a site of the E.coli ribosome
    • DOI 10.1093/emboj/17.24.7490
    • Pape T, Wintermeyer W, Rodnina MV. 1998. Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome. EMBO J 17: 7490-7497. (Pubitemid 29002715)
    • (1998) EMBO Journal , vol.17 , Issue.24 , pp. 7490-7497
    • Pape, T.1    Wintermeyer, W.2    Rodnina, M.V.3
  • 35
    • 0033168212 scopus 로고    scopus 로고
    • Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome
    • DOI 10.1093/emboj/18.13.3800
    • Pape T, Wintermeyer W, Rodnina M. 1999. Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome. EMBO J 18: 3800-3807. (Pubitemid 29308859)
    • (1999) EMBO Journal , vol.18 , Issue.13 , pp. 3800-3807
    • Pape, T.1    Wintermeyer, W.2    Rodnina, M.3
  • 36
    • 0033961143 scopus 로고    scopus 로고
    • Conformational switch in the decoding region of 16S rRNA during aminoacyl-tRNA selection on the ribosome
    • DOI 10.1038/72364
    • Pape T, Wintermeyer W, Rodnina MV. 2000. Conformational switch in the decoding region of 16S rRNA during aminoacyl-tRNA selection on the ribosome. Nat Struct Biol 7: 104-107. (Pubitemid 30082505)
    • (2000) Nature Structural Biology , vol.7 , Issue.2 , pp. 104-107
    • Pape, T.1    Wintermeyer, W.2    Rodnina, M.V.3
  • 37
    • 60649100084 scopus 로고    scopus 로고
    • Control of translation initiation involves a factor-induced rearrangement of helix 44 of 16S ribosomal RNA
    • Qin D, Fredrick K. 2009. Control of translation initiation involves a factor-induced rearrangement of helix 44 of 16S ribosomal RNA. Mol Microbiol 71: 1239-1249.
    • (2009) Mol Microbiol , vol.71 , pp. 1239-1249
    • Qin, D.1    Fredrick, K.2
  • 38
    • 36249023651 scopus 로고    scopus 로고
    • Characterization of 16S rRNA mutations that decrease the fidelity of translation initiation
    • Qin D, Abdi NM, Fredrick K. 2007. Characterization of 16S rRNA mutations that decrease the fidelity of translation initiation. RNA 13: 2348-2355.
    • (2007) RNA , vol.13 , pp. 2348-2355
    • Qin, D.1    Abdi, N.M.2    Fredrick, K.3
  • 40
    • 0346362326 scopus 로고    scopus 로고
    • Genetic evidence against the 16S ribosomal RNA helix 27 conformational switch model
    • Rodriguez-Correa D, Dahlberg AE. 2004. Genetic evidence against the 16S ribosomal RNA helix 27 conformational switch model. RNA 10: 28-33.
    • (2004) RNA , vol.10 , pp. 28-33
    • Rodriguez-Correa, D.1    Dahlberg, A.E.2
  • 44
    • 67651180795 scopus 로고    scopus 로고
    • Contribution of ribosomal residues to P-site tRNA binding
    • Shoji S, Abdi NM, Bundschuh R, Fredrick K. 2009. Contribution of ribosomal residues to P-site tRNA binding. Nucleic Acids Res 37: 4033-4042.
    • (2009) Nucleic Acids Res , vol.37 , pp. 4033-4042
    • Shoji, S.1    Abdi, N.M.2    Bundschuh, R.3    Fredrick, K.4
  • 45
    • 0026409389 scopus 로고
    • Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate
    • Sorensen MA, Pedersen S. 1991. Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate. J Mol Biol 222: 265-280.
    • (1991) J Mol Biol , vol.222 , pp. 265-280
    • Sorensen, M.A.1    Pedersen, S.2
  • 46
    • 66449107983 scopus 로고    scopus 로고
    • Accuracy modulating mutations of the ribosomal protein S4-S5 interface do not necessarily destabilize the rps4-rps5 protein-protein interaction
    • Vallabhaneni H, Farabaugh PJ. 2009. Accuracy modulating mutations of the ribosomal protein S4-S5 interface do not necessarily destabilize the rps4-rps5 protein-protein interaction. RNA 15: 1100-1109.
    • (2009) RNA , vol.15 , pp. 1100-1109
    • Vallabhaneni, H.1    Farabaugh, P.J.2
  • 47
    • 0033862288 scopus 로고    scopus 로고
    • Mutations in helix 27 of the yeast Saccharomyces cerevisiae 18S rRNA affect the function of the decoding center of the ribosome
    • Velichutina IV, Dresios J, Hong JY, Li C, Mankin A, Synetos D, Liebman SW. 2000. Mutations in helix 27 of the yeast Saccharomyces cerevisiae 18S rRNA affect the function of the decoding center of the ribosome. RNA 6: 1174-1184.
    • (2000) RNA , vol.6 , pp. 1174-1184
    • Velichutina, I.V.1    Dresios, J.2    Hong, J.Y.3    Li, C.4    Mankin, A.5    Synetos, D.6    Liebman, S.W.7
  • 49
    • 0029804685 scopus 로고    scopus 로고
    • The G222D mutation in elongation factor Tu inhibits the codon-induced conformational changes leading to GTPase activation on the ribosome
    • Vorstenbosch E, Pape T, Rodnina MV, Kraal B, Wintermeyer W. 1996. The G222D mutation in elongation factor Tu inhibits the codon-induced conformational changes leading to GTPase activation on the ribosome. EMBO J 15: 6766-6774. (Pubitemid 26413808)
    • (1996) EMBO Journal , vol.15 , Issue.23 , pp. 6766-6774
    • Vorstenbosch, E.1    Pape, T.2    Rodnina, M.V.3    Kraal, B.4    Wintermeyer, W.5
  • 51
    • 84886628776 scopus 로고
    • Alteration of ribosomal protein S17 by mutation linked to neamine resistance in Escherichia coli. II. Localization of the amino acid replacement in protein S17 from a meaA mutant
    • Yaguchi M, Wittmann HG, Cabezon T, DeWilde M, Villarroel R, Herzog A, Bollen A. 1976. Alteration of ribosomal protein S17 by mutation linked to neamine resistance in Escherichia coli. II. Localization of the amino acid replacement in protein S17 from a meaA mutant. J Mol Biol 104: 617-620.
    • (1976) J Mol Biol , vol.104 , pp. 617-620
    • Yaguchi, M.1    Wittmann, H.G.2    Cabezon, T.3    DeWilde, M.4    Villarroel, R.5    Herzog, A.6    Bollen, A.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.