메뉴 건너뛰기




Volumn 349, Issue 1, 2005, Pages 47-59

Multiple effects of S13 in modulating the strength of intersubunit interactions in the ribosome during translation

Author keywords

Fidelity; Ribosome; rpsM(S13); Subunit interface; Translation

Indexed keywords

PORTEIN S13; PROTEIN SUBUNIT; RIBOSOME PROTEIN; TRANSFER RNA; UNCLASSIFIED DRUG;

EID: 18144409413     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2005.03.075     Document Type: Article
Times cited : (49)

References (48)
  • 2
    • 0024458904 scopus 로고
    • Intermediate states in the movement of transfer RNA in the ribosome
    • D. Moazed, and H.F. Noller Intermediate states in the movement of transfer RNA in the ribosome Nature 342 1989 142 148
    • (1989) Nature , vol.342 , pp. 142-148
    • Moazed, D.1    Noller, H.F.2
  • 3
    • 0033534198 scopus 로고    scopus 로고
    • Nucleotides in 23 S rRNA protected by the association of 30 S and 50 S ribosomal subunits
    • C. Merryman, D. Moazed, G. Daubresse, and H.F. Noller Nucleotides in 23 S rRNA protected by the association of 30 S and 50 S ribosomal subunits J. Mol. Biol. 285 1999 107 113
    • (1999) J. Mol. Biol. , vol.285 , pp. 107-113
    • Merryman, C.1    Moazed, D.2    Daubresse, G.3    Noller, H.F.4
  • 4
    • 0033534197 scopus 로고    scopus 로고
    • Nucleotides in 16 S rRNA protected by the association of 30 S and 50 S ribosomal subunits
    • C. Merryman, D. Moazed, J. McWhirter, and H.F. Noller Nucleotides in 16 S rRNA protected by the association of 30 S and 50 S ribosomal subunits J. Mol. Biol. 285 1999 97 105
    • (1999) J. Mol. Biol. , vol.285 , pp. 97-105
    • Merryman, C.1    Moazed, D.2    McWhirter, J.3    Noller, H.F.4
  • 6
    • 0029402180 scopus 로고
    • A model of the translational apparatus based on a three-dimensional reconstruction of the Escherichia coli ribosome
    • J. Frank, A. Verschoor, Y. Li, J. Zhu, R.K. Lata, and M. Radermacher A model of the translational apparatus based on a three-dimensional reconstruction of the Escherichia coli ribosome Biochem. Cell. Biol. 73 1995 757 765
    • (1995) Biochem. Cell. Biol. , vol.73 , pp. 757-765
    • Frank, J.1    Verschoor, A.2    Li, Y.3    Zhu, J.4    Lata, R.K.5    Radermacher, M.6
  • 7
    • 0030582394 scopus 로고    scopus 로고
    • Three-dimensional reconstruction of the Escherichia coli 30 S ribosomal subunit in ice
    • K.R. Lata, R.K. Agrawal, P. Penczek, R. Grassucci, J. Zhu, and J. Frank Three-dimensional reconstruction of the Escherichia coli 30 S ribosomal subunit in ice J. Mol. Biol. 262 1996 43 52
    • (1996) J. Mol. Biol. , vol.262 , pp. 43-52
    • Lata, K.R.1    Agrawal, R.K.2    Penczek, P.3    Grassucci, R.4    Zhu, J.5    Frank, J.6
  • 9
    • 0034691576 scopus 로고    scopus 로고
    • A ratchet-like inter-subunit reorganization of the ribosome during translocation
    • J. Frank, and R.K. Agrawal A ratchet-like inter-subunit reorganization of the ribosome during translocation Nature 406 2000 318 322
    • (2000) Nature , vol.406 , pp. 318-322
    • Frank, J.1    Agrawal, R.K.2
  • 10
    • 0038275890 scopus 로고    scopus 로고
    • Study of the structural dynamics of the E. coli 70 S ribosome using real-space refinement
    • H. Gao, J. Sengupta, M. Valle, A. Korostelev, N. Eswar, and S.M. Stagg Study of the structural dynamics of the E. coli 70 S ribosome using real-space refinement Cell 113 2003 789 801
    • (2003) Cell , vol.113 , pp. 789-801
    • Gao, H.1    Sengupta, J.2    Valle, M.3    Korostelev, A.4    Eswar, N.5    Stagg, S.M.6
  • 11
    • 0042173407 scopus 로고    scopus 로고
    • Ribosomal proteins S12 and S13 function as control elements for translocation of the mRNA:tRNA complex
    • A.R. Cukras, D.R. Southworth, J.L. Brunelle, G.M. Culver, and R. Green Ribosomal proteins S12 and S13 function as control elements for translocation of the mRNA:tRNA complex Mol. Cell 12 2003 321 328
    • (2003) Mol. Cell , vol.12 , pp. 321-328
    • Cukras, A.R.1    Southworth, D.R.2    Brunelle, J.L.3    Culver, G.M.4    Green, R.5
  • 12
    • 0034759978 scopus 로고    scopus 로고
    • Interaction of translation initiation factor 3 with the 30 S ribosomal subunit
    • A. Dallas, and H.F. Noller Interaction of translation initiation factor 3 with the 30 S ribosomal subunit Mol. Cell 8 2001 855 864
    • (2001) Mol. Cell , vol.8 , pp. 855-864
    • Dallas, A.1    Noller, H.F.2
  • 14
    • 17744377418 scopus 로고    scopus 로고
    • Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3
    • M. Pioletti, F. Schlunzen, J. Harms, R. Zarivach, M. Gluhmann, and H. Avila Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3 EMBO J. 20 2001 1829 1839
    • (2001) EMBO J. , vol.20 , pp. 1829-1839
    • Pioletti, M.1    Schlunzen, F.2    Harms, J.3    Zarivach, R.4    Gluhmann, M.5    Avila, H.6
  • 15
    • 0033063428 scopus 로고    scopus 로고
    • Novel roles for classical factors at the interface between translation termination and initiation
    • R. Karimi, M.Y. Pavlov, R.H. Buckingham, and M. Ehrenberg Novel roles for classical factors at the interface between translation termination and initiation Mol. Cell 3 1999 601 609
    • (1999) Mol. Cell , vol.3 , pp. 601-609
    • Karimi, R.1    Pavlov, M.Y.2    Buckingham, R.H.3    Ehrenberg, M.4
  • 18
    • 0142041880 scopus 로고    scopus 로고
    • The roles of initiation factor 2 and guanosine triphosphate in initiation of protein synthesis
    • A. Antoun, M.Y. Pavlov, K. Andersson, T. Tenson, and M. Ehrenberg The roles of initiation factor 2 and guanosine triphosphate in initiation of protein synthesis EMBO J. 22 2003 5593 5601
    • (2003) EMBO J. , vol.22 , pp. 5593-5601
    • Antoun, A.1    Pavlov, M.Y.2    Andersson, K.3    Tenson, T.4    Ehrenberg, M.5
  • 19
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • K.A. Datsenko, and B.L. Wanner One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products Proc. Natl Acad. Sci. USA 97 2000 6640 6645
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 21
    • 0031785757 scopus 로고    scopus 로고
    • Sequence analysis of Tn10 insertion sites in a collection of Escherichia coli strains used for genetic mapping and strain construction
    • B.P. Nichols, O. Shafiq, and V. Meiners Sequence analysis of Tn10 insertion sites in a collection of Escherichia coli strains used for genetic mapping and strain construction J. Bacteriol. 180 1998 6408 6411
    • (1998) J. Bacteriol. , vol.180 , pp. 6408-6411
    • Nichols, B.P.1    Shafiq, O.2    Meiners, V.3
  • 22
    • 0033057324 scopus 로고    scopus 로고
    • Efficient reconstitution of functional Escherichia coli 30 S ribosomal subunits from a complete set of recombinant small subunit ribosomal proteins
    • G.M. Culver, and H.F. Noller Efficient reconstitution of functional Escherichia coli 30 S ribosomal subunits from a complete set of recombinant small subunit ribosomal proteins RNA 5 1999 832 843
    • (1999) RNA , vol.5 , pp. 832-843
    • Culver, G.M.1    Noller, H.F.2
  • 23
    • 2542470615 scopus 로고    scopus 로고
    • The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release
    • E.M. Youngman, J.L. Brunelle, A.B. Kochaniak, and R. Green The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release Cell 117 2004 589 599
    • (2004) Cell , vol.117 , pp. 589-599
    • Youngman, E.M.1    Brunelle, J.L.2    Kochaniak, A.B.3    Green, R.4
  • 24
    • 0842267211 scopus 로고    scopus 로고
    • Kinetic determinants of high-fidelity tRNA discrimination on the ribosome
    • K.B. Gromadski, and M.V. Rodnina Kinetic determinants of high-fidelity tRNA discrimination on the ribosome Mol. Cell 13 2004 191 200
    • (2004) Mol. Cell , vol.13 , pp. 191-200
    • Gromadski, K.B.1    Rodnina, M.V.2
  • 25
    • 0036671344 scopus 로고    scopus 로고
    • Important contribution to catalysis of peptide bond formation by a single ionizing group within the ribosome
    • V.I. Katunin, G.W. Muth, S.A. Strobel, W. Wintermeyer, and M.V. Rodnina Important contribution to catalysis of peptide bond formation by a single ionizing group within the ribosome Mol. Cell 10 2002 1 20
    • (2002) Mol. Cell , vol.10 , pp. 1-20
    • Katunin, V.I.1    Muth, G.W.2    Strobel, S.A.3    Wintermeyer, W.4    Rodnina, M.V.5
  • 26
    • 0036926943 scopus 로고    scopus 로고
    • EFG-independent translocation of the mRNA:tRNA complex is promoted by modification of the ribosome with thiol-specific reagents
    • D.R. Southworth, J.L. Brunelle, and R. Green EFG-independent translocation of the mRNA:tRNA complex is promoted by modification of the ribosome with thiol-specific reagents J. Mol. Biol. 324 2002 611 623
    • (2002) J. Mol. Biol. , vol.324 , pp. 611-623
    • Southworth, D.R.1    Brunelle, J.L.2    Green, R.3
  • 27
    • 0346362324 scopus 로고    scopus 로고
    • EF-G-independent reactivity of a pre-translocation state ribosome complex with the aminoacyl tRNA substrate puromycin supports an intermediate (hybrid) state of tRNA binding
    • D. Sharma, D.R. Southworth, and R. Green EF-G-independent reactivity of a pre-translocation state ribosome complex with the aminoacyl tRNA substrate puromycin supports an intermediate (hybrid) state of tRNA binding RNA 10 2004 102 113
    • (2004) RNA , vol.10 , pp. 102-113
    • Sharma, D.1    Southworth, D.R.2    Green, R.3
  • 28
    • 0038286524 scopus 로고    scopus 로고
    • Catalysis of ribosomal translocation by sparsomycin
    • K. Fredrick, and H.F. Noller Catalysis of ribosomal translocation by sparsomycin Science 300 2003 1159 1162
    • (2003) Science , vol.300 , pp. 1159-1162
    • Fredrick, K.1    Noller, H.F.2
  • 29
    • 0027244750 scopus 로고
    • Simple phagemid-based system for generating allele replacements in Escherichia coli
    • S. Slater, and R. Maurer Simple phagemid-based system for generating allele replacements in Escherichia coli J. Bacteriol. 175 1993 4260 4262
    • (1993) J. Bacteriol. , vol.175 , pp. 4260-4262
    • Slater, S.1    Maurer, R.2
  • 30
    • 0030763966 scopus 로고    scopus 로고
    • Decoding fidelity at the ribosomal a and P sites: Influence of mutations in three different regions of the decoding domain in 16 S rRNA
    • M. O'Connor, C.L. Thomas, R.A. Zimmermann, and A.E. Dahlberg Decoding fidelity at the ribosomal A and P sites: influence of mutations in three different regions of the decoding domain in 16 S rRNA Nucl. Acids Res. 25 1997 1185 1193
    • (1997) Nucl. Acids Res. , vol.25 , pp. 1185-1193
    • O'Connor, M.1    Thomas, C.L.2    Zimmermann, R.A.3    Dahlberg, A.E.4
  • 31
    • 0018129317 scopus 로고
    • Mutational alterations in 50 proteins of the Escherichia coli ribosome
    • E.R. Dabbs Mutational alterations in 50 proteins of the Escherichia coli ribosome Mol. Gen. Genet. 165 1978 73 78
    • (1978) Mol. Gen. Genet. , vol.165 , pp. 73-78
    • Dabbs, E.R.1
  • 32
    • 0028229628 scopus 로고
    • Antisuppression by a mutation in rpsM(S13) giving a shortened ribosomal protein S13
    • M. Faxen, A. Walles-Granberg, and L.A. Isaksson Antisuppression by a mutation in rpsM(S13) giving a shortened ribosomal protein S13 Biochim. Biophys. Acta 1218 1994 27 34
    • (1994) Biochim. Biophys. Acta , vol.1218 , pp. 27-34
    • Faxen, M.1    Walles-Granberg, A.2    Isaksson, L.A.3
  • 33
  • 34
    • 4344693455 scopus 로고    scopus 로고
    • Creating ribosomes with an all-RNA 30 S subunit P site
    • L. Hoang, K. Fredrick, and H.F. Noller Creating ribosomes with an all-RNA 30 S subunit P site Proc. Natl Acad. Sci. USA 101 2004 12439 12443
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 12439-12443
    • Hoang, L.1    Fredrick, K.2    Noller, H.F.3
  • 36
    • 0028906075 scopus 로고
    • Suppression of a cold-sensitive mutation in 16 S rRNA by overexpression of a novel ribosome-binding factor, RbfA
    • C.S. Dammel, and H.F. Noller Suppression of a cold-sensitive mutation in 16 S rRNA by overexpression of a novel ribosome-binding factor, RbfA Genes. Dev. 9 1995 626 637
    • (1995) Genes. Dev. , vol.9 , pp. 626-637
    • Dammel, C.S.1    Noller, H.F.2
  • 37
    • 0034870708 scopus 로고    scopus 로고
    • Hybrid protein between ribosomal protein S16 and RimM of Escherichia coli retains the ribosome maturation function of both proteins
    • J.M. Lovgren, and P.M. Wikstrom Hybrid protein between ribosomal protein S16 and RimM of Escherichia coli retains the ribosome maturation function of both proteins J. Bacteriol. 183 2001 5352 5357
    • (2001) J. Bacteriol. , vol.183 , pp. 5352-5357
    • Lovgren, J.M.1    Wikstrom, P.M.2
  • 38
    • 0037459218 scopus 로고    scopus 로고
    • Rapid kinetic analysis of EF-G-dependent mRNA translocation in the ribosome
    • S.M. Studer, J.S. Feinberg, and S. Joseph Rapid kinetic analysis of EF-G-dependent mRNA translocation in the ribosome J. Mol. Biol. 327 2003 369 381
    • (2003) J. Mol. Biol. , vol.327 , pp. 369-381
    • Studer, S.M.1    Feinberg, J.S.2    Joseph, S.3
  • 39
    • 0031028688 scopus 로고    scopus 로고
    • Hydrolysis of GTP by elongation factor G drives tRNA movement on the ribosome
    • M.V. Rodnina, A. Savelsbergh, V.I. Katunin, and W. Wintermeyer Hydrolysis of GTP by elongation factor G drives tRNA movement on the ribosome Nature 385 1997 37 41
    • (1997) Nature , vol.385 , pp. 37-41
    • Rodnina, M.V.1    Savelsbergh, A.2    Katunin, V.I.3    Wintermeyer, W.4
  • 40
    • 0027375408 scopus 로고
    • Mutations at U2555, a tRNA-protected base in 23 S rRNA, affect translational fidelity
    • M. O'Connor, and A.E. Dahlberg Mutations at U2555, a tRNA-protected base in 23 S rRNA, affect translational fidelity Proc. Natl Acad. Sci. USA 90 1993 9214 9218
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 9214-9218
    • O'Connor, M.1    Dahlberg, A.E.2
  • 41
    • 0029617892 scopus 로고
    • The involvement of two distinct regions of 23 S ribosomal RNA in tRNA selection
    • M. O'Connor, and A.E. Dahlberg The involvement of two distinct regions of 23 S ribosomal RNA in tRNA selection J. Mol. Biol. 254 1995 838 847
    • (1995) J. Mol. Biol. , vol.254 , pp. 838-847
    • O'Connor, M.1    Dahlberg, A.E.2
  • 43
    • 0036384314 scopus 로고    scopus 로고
    • The protein synthesis inhibitors, oxazolidinones and chloramphenicol, cause extensive translational inaccuracy in vivo
    • J. Thompson, M. O'Connor, J.A. Mills, and A.E. Dahlberg The protein synthesis inhibitors, oxazolidinones and chloramphenicol, cause extensive translational inaccuracy in vivo J. Mol. Biol. 322 2002 273 279
    • (2002) J. Mol. Biol. , vol.322 , pp. 273-279
    • Thompson, J.1    O'Connor, M.2    Mills, J.A.3    Dahlberg, A.E.4
  • 44
    • 0027477087 scopus 로고
    • Increased ribosomal accuracy increases a programmed translational frameshift in Escherichia coli
    • J. Sipley, and E. Goldman Increased ribosomal accuracy increases a programmed translational frameshift in Escherichia coli Proc. Natl Acad. Sci. USA 90 1993 2315 2319
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 2315-2319
    • Sipley, J.1    Goldman, E.2
  • 45
    • 0023777735 scopus 로고
    • Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli
    • E. Amann, B. Ochs, and K.J. Abel Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli Gene 69 1988 301 315
    • (1988) Gene , vol.69 , pp. 301-315
    • Amann, E.1    Ochs, B.2    Abel, K.J.3
  • 46
    • 0003785155 scopus 로고
    • Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
    • J.H. Miller Experiments in Molecular Genetics 1972 Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
    • (1972) Experiments in Molecular Genetics
    • Miller, J.H.1
  • 47
    • 0024506353 scopus 로고
    • A collection of strains containing genetically linked alternating antibiotic resistance elements for genetic mapping of Escherichia coli
    • M. Singer, T.A. Baker, G. Schnitzler, S.M. Deischel, M. Goel, and W. Dove A collection of strains containing genetically linked alternating antibiotic resistance elements for genetic mapping of Escherichia coli Microbiol. Rev. 53 1989 1 24
    • (1989) Microbiol. Rev. , vol.53 , pp. 1-24
    • Singer, M.1    Baker, T.A.2    Schnitzler, G.3    Deischel, S.M.4    Goel, M.5    Dove, W.6
  • 48
    • 0025012472 scopus 로고
    • Dominant lethal mutations in a conserved loop in 16 S rRNA
    • T. Powers, and H.F. Noller Dominant lethal mutations in a conserved loop in 16 S rRNA Proc. Natl Acad. Sci. USA 87 1990 1042 1046
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 1042-1046
    • Powers, T.1    Noller, H.F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.