메뉴 건너뛰기




Volumn 197, Issue 6, 2015, Pages 1017-1025

Modulation of decoding fidelity by ribosomal proteins S4 and S5

Author keywords

[No Author keywords available]

Indexed keywords

KANAMYCIN; PROTEIN S4; PROTEIN S5; RIBOSOME PROTEIN; RIBOSOME RNA; SPECTINOMYCIN; STREPTOMYCIN; UNCLASSIFIED DRUG; BACTERIOCIN; ESCHERICHIA COLI PROTEIN; MUTACIN II PREPEPTIDE, BACTERIA; PEPTIDE; RIBOSOMAL PROTEIN S4; RIBOSOMAL PROTEIN S5;

EID: 84923290649     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.02485-14     Document Type: Article
Times cited : (19)

References (43)
  • 3
    • 0014674086 scopus 로고
    • A ribosomal ambiguity mutation
    • Rosset R, Gorini L. 1969. A ribosomal ambiguity mutation. J Mol Biol 39:95-112. http://dx.doi.org/10.1016/0022-2836(69)90336-2.
    • (1969) J Mol Biol , vol.39 , pp. 95-112
    • Rosset, R.1    Gorini, L.2
  • 4
    • 0024722501 scopus 로고
    • Errors and alternatives in reading the universal genetic code
    • Parker J. 1989. Errors and alternatives in reading the universal genetic code. Microbiol Rev 53:273-298.
    • (1989) Microbiol Rev , vol.53 , pp. 273-298
    • Parker, J.1
  • 5
    • 0016792246 scopus 로고
    • Effect of different mutations in ribosomal protein S5 of Escherichia coli on translational fidelity
    • Piepersberg W, Bock A, Wittmann HG. 1975. Effect of different mutations in ribosomal protein S5 of Escherichia coli on translational fidelity. Mol Gen Genet 140:91-100. http://dx.doi.org/10.1007/BF00329777.
    • (1975) Mol Gen Genet , vol.140 , pp. 91-100
    • Piepersberg, W.1    Bock, A.2    Wittmann, H.G.3
  • 6
    • 18844413446 scopus 로고    scopus 로고
    • Structural insights into translational fidelity
    • Ogle JM, Ramakrishnan V. 2005. Structural insights into translational fidelity. Annu Rev Biochem 74:129-177. http://dx.doi.org/10.1146/annurev.biochem.74.061903.155440.
    • (2005) Annu Rev Biochem , vol.74 , pp. 129-177
    • Ogle, J.M.1    Ramakrishnan, V.2
  • 7
    • 0037184536 scopus 로고    scopus 로고
    • Selection of tRNA by the ribosome requires a transition from an open to a closed form
    • Ogle JM, Murphy FV, Tarry MJ, Ramakrishnan V. 2002. Selection of tRNA by the ribosome requires a transition from an open to a closed form. Cell 111:721-732. http://dx.doi.org/10.1016/S0092-8674(02)01086-3.
    • (2002) Cell , vol.111 , pp. 721-732
    • Ogle, J.M.1    Murphy, F.V.2    Tarry, M.J.3    Ramakrishnan, V.4
  • 8
    • 0032896612 scopus 로고    scopus 로고
    • Novel ribosomal mutations affecting translational accuracy, antibiotic resistance and virulence of Salmonella typhimurium
    • Björkman J, Samuelsson P, Andersson DI, Hughes D. 1999. Novel ribosomal mutations affecting translational accuracy, antibiotic resistance and virulence of Salmonella typhimurium. Mol Microbiol 31:53-58. http://dx.doi.org/10.1046/j.1365-2958.1999.01142.x.
    • (1999) Mol Microbiol , vol.31 , pp. 53-58
    • Björkman, J.1    Samuelsson, P.2    Andersson, D.I.3    Hughes, D.4
  • 9
    • 77949532149 scopus 로고    scopus 로고
    • Appropriate maturation and folding of 16S rRNA during 30S subunit biogenesis are critical for translational fidelity
    • Roy-Chaudhuri B, Kirthi N, Culver GM. 2010. Appropriate maturation and folding of 16S rRNA during 30S subunit biogenesis are critical for translational fidelity. Proc Natl Acad Sci U S A 107:4567-4572. http://dx.doi.org/10.1073/pnas.0912305107.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 4567-4572
    • Roy-Chaudhuri, B.1    Kirthi, N.2    Culver, G.M.3
  • 10
    • 66449107983 scopus 로고    scopus 로고
    • Accuracy modulating mutations of the ribosomal protein S4-S5 interface do not necessarily destabilize the rps4-rps5 protein-protein interaction
    • Vallabhaneni H, Farabaugh PJ. 2009. Accuracy modulating mutations of the ribosomal protein S4-S5 interface do not necessarily destabilize the rps4-rps5 protein-protein interaction. RNA 15:1100-1109. http://dx.doi.org/10.1261/rna.1530509.
    • (2009) RNA , vol.15 , pp. 1100-1109
    • Vallabhaneni, H.1    Farabaugh, P.J.2
  • 12
    • 84878993928 scopus 로고    scopus 로고
    • Ribosomal ambiguity made less ambiguous
    • Moore PB. 2013. Ribosomal ambiguity made less ambiguous. Proc Natl Acad Sci U S A 110:9627-9628. http://dx.doi.org/10.1073/pnas.1307288110.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. 9627-9628
    • Moore, P.B.1
  • 13
    • 0015711959 scopus 로고
    • Localization of the aminoacid exchange in protein S5 from an Escherichia coli mutant resistant to spectinomycin
    • DeWilde M, Wittmann-Liebold B. 1973. Localization of the aminoacid exchange in protein S5 from an Escherichia coli mutant resistant to spectinomycin. Mol Gen Genet 127:273-276. http://dx.doi.org/10.1007/BF00333767.
    • (1973) Mol Gen Genet , vol.127 , pp. 273-276
    • DeWilde, M.1    Wittmann-Liebold, B.2
  • 14
    • 0016710637 scopus 로고
    • Cooperative control of translational fidelity by ribosomal proteins in Escherichia coli. II. Localization of amino acid replacements in proteins S5 and S12 altered in double mutants resistant to neamine
    • Yaguchi M, Wittmann HG, Cabezon T, De Wilde M, Villarroel R, Herzog A, Bollen A. 1975. Cooperative control of translational fidelity by ribosomal proteins in Escherichia coli. II. Localization of amino acid replacements in proteins S5 and S12 altered in double mutants resistant to neamine. Mol Gen Genet 142:35-43.
    • (1975) Mol Gen Genet , vol.142 , pp. 35-43
    • Yaguchi, M.1    Wittmann, H.G.2    Cabezon, T.3    De Wilde, M.4    Villarroel, R.5    Herzog, A.6    Bollen, A.7
  • 15
    • 79958702906 scopus 로고    scopus 로고
    • Error-prone and errorrestrictive mutations affecting ribosomal protein S12
    • Agarwal D, Gregory ST, O'Connor M. 2011. Error-prone and errorrestrictive mutations affecting ribosomal protein S12. J Mol Biol 410:1-9. http://dx.doi.org/10.1016/j.jmb.2011.04.068.
    • (2011) J Mol Biol , vol.410 , pp. 1-9
    • Agarwal, D.1    Gregory, S.T.2    O'Connor, M.3
  • 16
    • 78650105927 scopus 로고    scopus 로고
    • Inactivation of the RluD pseudouridine synthase has minimal effects on growth and ribosome function in wildtype Escherichia coli and Salmonella enterica
    • O'Connor M, Gregory ST. 2011. Inactivation of the RluD pseudouridine synthase has minimal effects on growth and ribosome function in wildtype Escherichia coli and Salmonella enterica. J Bacteriol 193:154-162. http://dx.doi.org/10.1128/JB.00970-10.
    • (2011) J Bacteriol , vol.193 , pp. 154-162
    • O'Connor, M.1    Gregory, S.T.2
  • 17
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko KA, Wanner BL. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97:6640-6645. http://dx.doi.org/10.1073/pnas.120163297.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 18
    • 79955632736 scopus 로고    scopus 로고
    • Mutations in the intersubunit bridge regions of 16S rRNA affect decoding and subunit-subunit interactions on the 70S ribosome
    • Sun Q, Vila-Sanjurjo A, O'Connor M. 2011. Mutations in the intersubunit bridge regions of 16S rRNA affect decoding and subunit-subunit interactions on the 70S ribosome. Nucleic Acids Res 39:3321-3330. http://dx.doi.org/10.1093/nar/gkq1253.
    • (2011) Nucleic Acids Res , vol.39 , pp. 3321-3330
    • Sun, Q.1    Vila-Sanjurjo, A.2    O'Connor, M.3
  • 19
    • 0033532514 scopus 로고    scopus 로고
    • Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 5= end of 16S rRNA
    • Wachi M, Umitsuki G, Shimizu M, Takada A, Nagai K. 1999. Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 5= end of 16S rRNA. Biochem Biophys Res Commun 259:483-488. http://dx.doi.org/10.1006/bbrc.1999.0806.
    • (1999) Biochem Biophys Res Commun , vol.259 , pp. 483-488
    • Wachi, M.1    Umitsuki, G.2    Shimizu, M.3    Takada, A.4    Nagai, K.5
  • 20
    • 0017273722 scopus 로고
    • Processing of the 17-S Escherichia coli precursor RNA in the 27-S pre-ribosomal particle
    • Hayes F, Vasseur M. 1976. Processing of the 17-S Escherichia coli precursor RNA in the 27-S pre-ribosomal particle. Eur J Biochem 61:433-442. http://dx.doi.org/10.1111/j.1432-1033.1976.tb10037.x.
    • (1976) Eur J Biochem , vol.61 , pp. 433-442
    • Hayes, F.1    Vasseur, M.2
  • 21
    • 0019180196 scopus 로고
    • How partially inhibitory concentrations of chloramphenicol affect the growth of Escherichia coli
    • Harvey RJ, Koch AL. 1980. How partially inhibitory concentrations of chloramphenicol affect the growth of Escherichia coli. Antimicrob Agents Chemother 18:323-337. http://dx.doi.org/10.1128/AAC.18.2.323.
    • (1980) Antimicrob Agents Chemother , vol.18 , pp. 323-337
    • Harvey, R.J.1    Koch, A.L.2
  • 22
    • 33845895536 scopus 로고    scopus 로고
    • The frequency of translational misreading errors in E. coli is largely determined by tRNA competition
    • Kramer EB, Farabaugh PJ. 2007. The frequency of translational misreading errors in E. coli is largely determined by tRNA competition. RNA 13:87-96. http://dx.doi.org/10.1261/rna.294907.
    • (2007) RNA , vol.13 , pp. 87-96
    • Kramer, E.B.1    Farabaugh, P.J.2
  • 23
    • 0030763966 scopus 로고    scopus 로고
    • Decoding fidelity at the ribosomal A and P sites: influence of mutations in three different regions of the decoding domain in 16S rRNA
    • O'Connor M, Thomas CL, Zimmermann RA, Dahlberg AE. 1997. Decoding fidelity at the ribosomal A and P sites: influence of mutations in three different regions of the decoding domain in 16S rRNA. Nucleic Acids Res 25:1185-1193. http://dx.doi.org/10.1093/nar/25.6.1185.
    • (1997) Nucleic Acids Res , vol.25 , pp. 1185-1193
    • O'Connor, M.1    Thomas, C.L.2    Zimmermann, R.A.3    Dahlberg, A.E.4
  • 24
    • 0033814232 scopus 로고    scopus 로고
    • A novel mutation in ribosomal protein S4 that affects the function of a mutated RF1
    • Dahlgren A, Ryden-Aulin M. 2000. A novel mutation in ribosomal protein S4 that affects the function of a mutated RF1. Biochimie 82:683-691. http://dx.doi.org/10.1016/S0300-9084(00)01160-3.
    • (2000) Biochimie , vol.82 , pp. 683-691
    • Dahlgren, A.1    Ryden-Aulin, M.2
  • 25
    • 0017275724 scopus 로고
    • Cooperative control of translational fidelity by ribosomal proteins in Escherichia coli. III. A ram mutation in the structural gene for protein S5(rpx E)
    • Cabezon T, Herzog A, De Wilde M, Villarroel R, Bollen A. 1976. Cooperative control of translational fidelity by ribosomal proteins in Escherichia coli. III. A ram mutation in the structural gene for protein S5(rpx E). Mol Gen Genet 144:59-62.
    • (1976) Mol Gen Genet , vol.144 , pp. 59-62
    • Cabezon, T.1    Herzog, A.2    De Wilde, M.3    Villarroel, R.4    Bollen, A.5
  • 26
    • 0014402830 scopus 로고
    • Ribosomal protein conferring sensitivity to the antibiotic spectinomycin in Escherichia coli
    • Bollen A, Davies J, Ozaki M, Mizushima S. 1969. Ribosomal protein conferring sensitivity to the antibiotic spectinomycin in Escherichia coli. Science 165:85-86.
    • (1969) Science , vol.165 , pp. 85-86
    • Bollen, A.1    Davies, J.2    Ozaki, M.3    Mizushima, S.4
  • 27
    • 77957320587 scopus 로고    scopus 로고
    • Missense suppressor mutations in 16S rRNA reveal the importance of helices h8 and h14 in aminoacyl-tRNA selection
    • McClory SP, Leisring JM, Qin D, Fredrick K. 2010. Missense suppressor mutations in 16S rRNA reveal the importance of helices h8 and h14 in aminoacyl-tRNA selection. RNA 16:1925-1934. http://dx.doi.org/10.1261/rna.2228510.
    • (2010) RNA , vol.16 , pp. 1925-1934
    • McClory, S.P.1    Leisring, J.M.2    Qin, D.3    Fredrick, K.4
  • 28
    • 0016250230 scopus 로고
    • Pleiotropic effects of ribosomal protein s4 studied in Escherichia coli mutants
    • Olsson M, Isaksson L, Kurland CG. 1974. Pleiotropic effects of ribosomal protein s4 studied in Escherichia coli mutants. Mol Gen Genet 135:191-202. http://dx.doi.org/10.1007/BF00268615.
    • (1974) Mol Gen Genet , vol.135 , pp. 191-202
    • Olsson, M.1    Isaksson, L.2    Kurland, C.G.3
  • 29
    • 84875423497 scopus 로고    scopus 로고
    • Specific contacts between protein S4 and ribosomal RNA are required at multiple stages of ribosome assembly
    • Mayerle M, Woodson SA. 2013. Specific contacts between protein S4 and ribosomal RNA are required at multiple stages of ribosome assembly. RNA 19:574-585. http://dx.doi.org/10.1261/rna.037028.112.
    • (2013) RNA , vol.19 , pp. 574-585
    • Mayerle, M.1    Woodson, S.A.2
  • 30
    • 0033577789 scopus 로고    scopus 로고
    • RNase G (CafA protein) and RNase E are both required for the 5= maturation of 16S ribosomal RNA
    • Li Z, Pandit S, Deutscher MP. 1999. RNase G (CafA protein) and RNase E are both required for the 5= maturation of 16S ribosomal RNA. EMBO J 18:2878-2885. http://dx.doi.org/10.1093/emboj/18.10.2878.
    • (1999) EMBO J , vol.18 , pp. 2878-2885
    • Li, Z.1    Pandit, S.2    Deutscher, M.P.3
  • 31
    • 77954298382 scopus 로고    scopus 로고
    • Hyperaccurate and error-prone ribosomes exploit distinct mechanisms during tRNA selection
    • Zaher HS, Green R. 2010. Hyperaccurate and error-prone ribosomes exploit distinct mechanisms during tRNA selection. Mol Cell 39:110-120. http://dx.doi.org/10.1016/j.molcel.2010.06.009.
    • (2010) Mol Cell , vol.39 , pp. 110-120
    • Zaher, H.S.1    Green, R.2
  • 32
    • 0020603594 scopus 로고
    • Ram ribosomes are defective proofreaders
    • Andersson DI, Kurland CG. 1983. Ram ribosomes are defective proofreaders. Mol Gen Genet 191:378-381. http://dx.doi.org/10.1007/BF00425749.
    • (1983) Mol Gen Genet , vol.191 , pp. 378-381
    • Andersson, D.I.1    Kurland, C.G.2
  • 33
    • 0036431723 scopus 로고    scopus 로고
    • Compensatory adaptation to the deleterious effect of antibiotic resistance in Salmonella typhimurium
    • Maisnier-Patin S, Berg OG, Liljas L, Andersson DI. 2002. Compensatory adaptation to the deleterious effect of antibiotic resistance in Salmonella typhimurium. Mol Microbiol 46:355-366. http://dx.doi.org/10.1046/j.1365-2958.2002.03173.x.
    • (2002) Mol Microbiol , vol.46 , pp. 355-366
    • Maisnier-Patin, S.1    Berg, O.G.2    Liljas, L.3    Andersson, D.I.4
  • 34
    • 0025175852 scopus 로고
    • Bacillus subtilis mutants with alterations in ribosomal protein S4
    • Henkin TM, Chambliss GH, Grundy FJ. 1990. Bacillus subtilis mutants with alterations in ribosomal protein S4. J Bacteriol 172:6380-6385.
    • (1990) J Bacteriol , vol.172 , pp. 6380-6385
    • Henkin, T.M.1    Chambliss, G.H.2    Grundy, F.J.3
  • 35
    • 0034884129 scopus 로고    scopus 로고
    • Construction of an in vivo nonsense readthrough assay system and functional analysis of ribosomal proteins S12, S4, and S5 in Bacillus subtilis
    • Inaoka T, Kasai K, Ochi K. 2001. Construction of an in vivo nonsense readthrough assay system and functional analysis of ribosomal proteins S12, S4, and S5 in Bacillus subtilis. J Bacteriol 183:4958-4963. http://dx.doi.org/10.1128/JB.183.17.4958-4963.2001.
    • (2001) J Bacteriol , vol.183 , pp. 4958-4963
    • Inaoka, T.1    Kasai, K.2    Ochi, K.3
  • 36
    • 0018169695 scopus 로고
    • The primary structure of protein S5 from the small subunit of the Escherichia coli ribosome
    • Wittmann-Liebold B, Greuer B. 1978. The primary structure of protein S5 from the small subunit of the Escherichia coli ribosome. FEBS Lett 95:91-98. http://dx.doi.org/10.1016/0014-5793(78)80059-3.
    • (1978) FEBS Lett , vol.95 , pp. 91-98
    • Wittmann-Liebold, B.1    Greuer, B.2
  • 38
    • 84899495597 scopus 로고    scopus 로고
    • Structural insights into the assembly of the 30S ribosomal subunit in vivo: functional role of S5 and location of the 17S rRNA precursor sequence
    • Yang Z, Guo Q, Goto S, Chen Y, Li N, Yan K, Zhang Y, Muto A, Deng H, Himeno H, Lei J, Gao N. 2014. Structural insights into the assembly of the 30S ribosomal subunit in vivo: functional role of S5 and location of the 17S rRNA precursor sequence. Protein Cell 5:394-407. http://dx.doi.org/10.1007/s13238-014-0044-1.
    • (2014) Protein Cell , vol.5 , pp. 394-407
    • Yang, Z.1    Guo, Q.2    Goto, S.3    Chen, Y.4    Li, N.5    Yan, K.6    Zhang, Y.7    Muto, A.8    Deng, H.9    Himeno, H.10    Lei, J.11    Gao, N.12
  • 39
    • 60149099539 scopus 로고    scopus 로고
    • Fidelity at the molecular level: lessons from protein synthesis
    • Zaher HS, Green R. 2009. Fidelity at the molecular level: lessons from protein synthesis. Cell 136:746-762. http://dx.doi.org/10.1016/j.cell.2009.01.036.
    • (2009) Cell , vol.136 , pp. 746-762
    • Zaher, H.S.1    Green, R.2
  • 40
    • 14544285163 scopus 로고    scopus 로고
    • Recognition and selection of tRNA in translation
    • Rodnina MV, Gromadski KB, Kothe U, Wieden HJ. 2005. Recognition and selection of tRNA in translation. FEBS Lett 579:938-942. http://dx.doi.org/10.1016/j.febslet.2004.11.048.
    • (2005) FEBS Lett , vol.579 , pp. 938-942
    • Rodnina, M.V.1    Gromadski, K.B.2    Kothe, U.3    Wieden, H.J.4
  • 41
    • 42049086762 scopus 로고    scopus 로고
    • Rate and accuracy of bacterial protein synthesis revisited
    • Johansson M, Lovmar M, Ehrenberg M. 2008. Rate and accuracy of bacterial protein synthesis revisited. Curr Opin Microbiol 11:141-147. http://dx.doi.org/10.1016/j.mib.2008.02.015.
    • (2008) Curr Opin Microbiol , vol.11 , pp. 141-147
    • Johansson, M.1    Lovmar, M.2    Ehrenberg, M.3
  • 42
    • 84896540630 scopus 로고    scopus 로고
    • Distinct functional classes of ram mutations in 16S rRNA
    • McClory SP, Devaraj A, Fredrick K. 2014. Distinct functional classes of ram mutations in 16S rRNA. RNA 20:496-504. http://dx.doi.org/10.1261/rna.043331.113.
    • (2014) RNA , vol.20 , pp. 496-504
    • McClory, S.P.1    Devaraj, A.2    Fredrick, K.3
  • 43
    • 84896074098 scopus 로고    scopus 로고
    • Diverse effects of residues 74-78 in ribosomal protein S12 on decoding and antibiotic sensitivity
    • Agarwal D, O'Connor M. 2014. Diverse effects of residues 74-78 in ribosomal protein S12 on decoding and antibiotic sensitivity. Biochem Biophys Res Commun 445:475-479. http://dx.doi.org/10.1016/j.bbrc.2014.02.031.
    • (2014) Biochem Biophys Res Commun , vol.445 , pp. 475-479
    • Agarwal, D.1    O'Connor, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.