메뉴 건너뛰기




Volumn 23, Issue 3, 2015, Pages 505-531

Evolutionary impact of transposable elements on genomic diversity and lineage-specific innovation in vertebrates

Author keywords

Diversity; Lineage specific evolution; New genes; Transposable elements; Vertebrates

Indexed keywords

LONG UNTRANSLATED RNA; TRANSCRIPTION FACTOR; UNTRANSLATED RNA; RETROPOSON; TRANSPOSON;

EID: 84947486019     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-015-9493-5     Document Type: Article
Times cited : (83)

References (232)
  • 1
    • 84872038659 scopus 로고    scopus 로고
    • Transposable elements domesticated and neofunctionalized by eukaryotic genomes
    • COI: 1:CAS:528:DC%2BC38XhtlKjsrnP, PID: 22960324
    • Alzohairy AM, Gyulai G, Jansen RK, Bahieldin A (2013) Transposable elements domesticated and neofunctionalized by eukaryotic genomes. Plasmid 69:1–15
    • (2013) Plasmid , vol.69 , pp. 1-15
    • Alzohairy, A.M.1    Gyulai, G.2    Jansen, R.K.3    Bahieldin, A.4
  • 2
    • 84878437562 scopus 로고    scopus 로고
    • Non-coding RNAs in homeostasis, disease and stress responses: an evolutionary perspective
    • COI: 1:CAS:528:DC%2BC3sXos12hurk%3D, PID: 23709461
    • Amaral PP, Dinger ME, Mattick JS (2013) Non-coding RNAs in homeostasis, disease and stress responses: an evolutionary perspective. Brief Funct Genomics 12:254–278
    • (2013) Brief Funct Genomics , vol.12 , pp. 254-278
    • Amaral, P.P.1    Dinger, M.E.2    Mattick, J.S.3
  • 3
    • 36549053175 scopus 로고    scopus 로고
    • A genomic view of introgression and hybrid speciation
    • COI: 1:CAS:528:DC%2BD2sXhsVWisbzI, PID: 17933508
    • Baack EJ, Rieseberg LH (2007) A genomic view of introgression and hybrid speciation. Curr Opin Genet Dev 17:513–518
    • (2007) Curr Opin Genet Dev , vol.17 , pp. 513-518
    • Baack, E.J.1    Rieseberg, L.H.2
  • 4
    • 84879355401 scopus 로고    scopus 로고
    • A new exon derived from a mammalian apparent LTR retrotransposon of the SUPT16H gene
    • PID: 23671841
    • Bae MI, Kim YJ, Lee JR, Jung YD, Kim HS (2013) A new exon derived from a mammalian apparent LTR retrotransposon of the SUPT16H gene. Int J Genomics 2013:387594
    • (2013) Int J Genomics , vol.2013 , pp. 387594
    • Bae, M.I.1    Kim, Y.J.2    Lee, J.R.3    Jung, Y.D.4    Kim, H.S.5
  • 5
    • 33847029992 scopus 로고    scopus 로고
    • Null mutations in the filaggrin gene (FLG) determine major susceptibility to early-onset atopic dermatitis that persists into adulthood
    • COI: 1:CAS:528:DC%2BD2sXhs1Crtr0%3D, PID: 16990802
    • Barker JN, Palmer CN, Zhao Y et al (2007) Null mutations in the filaggrin gene (FLG) determine major susceptibility to early-onset atopic dermatitis that persists into adulthood. J Invest Dermatol 127:564–567
    • (2007) J Invest Dermatol , vol.127 , pp. 564-567
    • Barker, J.N.1    Palmer, C.N.2    Zhao, Y.3
  • 6
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • COI: 1:CAS:528:DC%2BD2cXhtVals7o%3D, PID: 14744438
    • Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116:281–297
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 7
    • 39749182717 scopus 로고    scopus 로고
    • The impact of multiple splice sites in human L1 elements
    • COI: 1:CAS:528:DC%2BD1cXis1aksbo%3D, PID: 18261861
    • Belancio VP, Roy-Engel AM, Deininger P (2008) The impact of multiple splice sites in human L1 elements. Gene 411:38–45
    • (2008) Gene , vol.411 , pp. 38-45
    • Belancio, V.P.1    Roy-Engel, A.M.2    Deininger, P.3
  • 8
    • 0030813619 scopus 로고    scopus 로고
    • Identification of a placental enhancer for the human leptin gene
    • COI: 1:CAS:528:DyaK2sXnslGgsb8%3D, PID: 9374555
    • Bi S, Gavrilova O, Gong DW, Mason MM, Reitman M (1997) Identification of a placental enhancer for the human leptin gene. J Biol Chem 272:30583–30588
    • (1997) J Biol Chem , vol.272 , pp. 30583-30588
    • Bi, S.1    Gavrilova, O.2    Gong, D.W.3    Mason, M.M.4    Reitman, M.5
  • 9
    • 0037379495 scopus 로고    scopus 로고
    • Placenta-specific INSL4 expression is mediated by a human endogenous retrovirus element
    • PID: 12606452
    • Bièche I, Laurent A, Laurendeau I et al (2003) Placenta-specific INSL4 expression is mediated by a human endogenous retrovirus element. Biol Reprod 68:1422–1429
    • (2003) Biol Reprod , vol.68 , pp. 1422-1429
    • Bièche, I.1    Laurent, A.2    Laurendeau, I.3
  • 10
    • 0020317050 scopus 로고
    • The molecular basis of P-M hybrid dysgenesis: the role of the P element, a P-strain-specific transposon family
    • COI: 1:CAS:528:DyaL38XltVCqsLk%3D, PID: 6295641
    • Bingham PM, Kidwell MG, Rubin GM (1982) The molecular basis of P-M hybrid dysgenesis: the role of the P element, a P-strain-specific transposon family. Cell 29:995–1004
    • (1982) Cell , vol.29 , pp. 995-1004
    • Bingham, P.M.1    Kidwell, M.G.2    Rubin, G.M.3
  • 11
    • 0242300065 scopus 로고    scopus 로고
    • Genomewide screening for fusogenic human endogenous retrovirus envelopes identifies syncytin 2, a gene conserved on primate evolution
    • COI: 1:CAS:528:DC%2BD3sXoslKms70%3D, PID: 14557543
    • Blaise S, de Parseval N, Bénit L, Heidmann T (2003) Genomewide screening for fusogenic human endogenous retrovirus envelopes identifies syncytin 2, a gene conserved on primate evolution. Proc Natl Acad Sci U S A 100:13013–13018
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 13013-13018
    • Blaise, S.1    de Parseval, N.2    Bénit, L.3    Heidmann, T.4
  • 12
    • 84865420717 scopus 로고    scopus 로고
    • Accumulation and rapid decay of non-LTR retrotransposons in the genome of the three-spine stickleback
    • PID: 22534163
    • Blass E, Bell M, Boissinot S (2012) Accumulation and rapid decay of non-LTR retrotransposons in the genome of the three-spine stickleback. Genome Biol Evol 4:687–702
    • (2012) Genome Biol Evol , vol.4 , pp. 687-702
    • Blass, E.1    Bell, M.2    Boissinot, S.3
  • 13
    • 39749165104 scopus 로고    scopus 로고
    • Transposable elements as drivers of genomic and biological diversity in vertebrates
    • PID: 18293113
    • Böhne A, Brunet F, Galiana-Arnoux D, Schultheis C, Volff JN (2008) Transposable elements as drivers of genomic and biological diversity in vertebrates. Chromosome Res 16:203–215
    • (2008) Chromosome Res , vol.16 , pp. 203-215
    • Böhne, A.1    Brunet, F.2    Galiana-Arnoux, D.3    Schultheis, C.4    Volff, J.N.5
  • 14
    • 83455168092 scopus 로고    scopus 로고
    • Comprehensive analysis of microRNA genomic loci identifies pervasive repetitive-element origins
    • Borchert GM, Holton NW, Williams JD et al (2011) Comprehensive analysis of microRNA genomic loci identifies pervasive repetitive-element origins. Mob Genet Elem 1:8–17
    • (2011) Mob Genet Elem , vol.1 , pp. 8-17
    • Borchert, G.M.1    Holton, N.W.2    Williams, J.D.3
  • 15
    • 71749094924 scopus 로고    scopus 로고
    • Transposable elements in gene regulation and in the evolution of vertebrate genomes
    • COI: 1:CAS:528:DC%2BD1MXhsV2gsrbK, PID: 19914058
    • Bourque G (2009) Transposable elements in gene regulation and in the evolution of vertebrate genomes. Curr Opin Genet Dev 19:607–612
    • (2009) Curr Opin Genet Dev , vol.19 , pp. 607-612
    • Bourque, G.1
  • 16
    • 55549117831 scopus 로고    scopus 로고
    • Evolution of the mammalian transcription factor binding repertoire via transposable elements
    • COI: 1:CAS:528:DC%2BD1cXhtlKhsr3O, PID: 18682548
    • Bourque G, Leong B, Vega VB et al (2008) Evolution of the mammalian transcription factor binding repertoire via transposable elements. Genome Res 18:1752–1762
    • (2008) Genome Res , vol.18 , pp. 1752-1762
    • Bourque, G.1    Leong, B.2    Vega, V.B.3
  • 17
    • 13444257816 scopus 로고    scopus 로고
    • Transposable elements as a source of genetic innovation: expression and evolution of a family of retrotransposon-derived neogenes in mammals
    • COI: 1:CAS:528:DC%2BD2MXhtFejsbk%3D, PID: 15716091
    • Brandt J, Schrauth S, Veith AM et al (2005) Transposable elements as a source of genetic innovation: expression and evolution of a family of retrotransposon-derived neogenes in mammals. Gene 345:101–111
    • (2005) Gene , vol.345 , pp. 101-111
    • Brandt, J.1    Schrauth, S.2    Veith, A.M.3
  • 18
    • 84907867272 scopus 로고    scopus 로고
    • The genomic substrate for adaptive radiation in African cichlid fish
    • COI: 1:CAS:528:DC%2BC2cXhsFOlu7bM, PID: 25186727
    • Brawand D, Wagner CE, Li YI et al (2014) The genomic substrate for adaptive radiation in African cichlid fish. Nature 513:375–381
    • (2014) Nature , vol.513 , pp. 375-381
    • Brawand, D.1    Wagner, C.E.2    Li, Y.I.3
  • 19
    • 0015070886 scopus 로고
    • Repetitive and non-repetitive DNA sequences and a speculation on the origins of evolutionary novelty
    • COI: 1:STN:280:DyaE387hsFSqsw%3D%3D, PID: 5160087
    • Britten RJ, Davidson EH (1971) Repetitive and non-repetitive DNA sequences and a speculation on the origins of evolutionary novelty. Q Rev Biol 46:111–138
    • (1971) Q Rev Biol , vol.46 , pp. 111-138
    • Britten, R.J.1    Davidson, E.H.2
  • 20
    • 0036948420 scopus 로고    scopus 로고
    • Allosteric cascade of spliceosome activation
    • COI: 1:CAS:528:DC%2BD3sXjslekug%3D%3D, PID: 12429696
    • Brow DA (2002) Allosteric cascade of spliceosome activation. Annu Rev Genet 36:333–360
    • (2002) Annu Rev Genet , vol.36 , pp. 333-360
    • Brow, D.A.1
  • 21
    • 33750151691 scopus 로고    scopus 로고
    • Computational characterization of multiple Gag-like human proteins
    • COI: 1:CAS:528:DC%2BD28XhtFeqtLvE, PID: 16979784
    • Campillos M, Doerks T, Shah PK, Bork P (2006) Computational characterization of multiple Gag-like human proteins. Trends Genet 22:585–589
    • (2006) Trends Genet , vol.22 , pp. 585-589
    • Campillos, M.1    Doerks, T.2    Shah, P.K.3    Bork, P.4
  • 23
    • 84859466218 scopus 로고    scopus 로고
    • Mutation in a primate-conserved retrotransposon reveals a noncoding RNA as a mediator of infantile encephalopathy
    • COI: 1:CAS:528:DC%2BC38Xlt1agtbc%3D, PID: 22411793
    • Cartault F, Munier P, Benko E et al (2012) Mutation in a primate-conserved retrotransposon reveals a noncoding RNA as a mediator of infantile encephalopathy. Proc Natl Acad Sci U S A 109:4980–4985
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 4980-4985
    • Cartault, F.1    Munier, P.2    Benko, E.3
  • 24
    • 38349103460 scopus 로고    scopus 로고
    • Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals
    • COI: 1:CAS:528:DC%2BD1cXit12jsLw%3D, PID: 17940212
    • Casola C, Hucks D, Feschotte C (2008) Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals. Mol Biol Evol 25:29–41
    • (2008) Mol Biol Evol , vol.25 , pp. 29-41
    • Casola, C.1    Hucks, D.2    Feschotte, C.3
  • 25
    • 84885788740 scopus 로고    scopus 로고
    • Genetic innovation in vertebrates: gypsy integrase genes and other genes derived from transposable elements
    • PID: 22928150
    • Chalopin D, Galiana D, Volff JN (2012) Genetic innovation in vertebrates: gypsy integrase genes and other genes derived from transposable elements. Int J Evol Biol 2012:724519
    • (2012) Int J Evol Biol , vol.2012 , pp. 724519
    • Chalopin, D.1    Galiana, D.2    Volff, J.N.3
  • 26
    • 84928236059 scopus 로고    scopus 로고
    • Comparative analysis of transposable elements highlights mobilome diversity and evolution in vertebrates
    • COI: 1:CAS:528:DC%2BC2MXkvV2rtL4%3D, PID: 25577199
    • Chalopin D, Naville M, Plard F, Galiana D, Volff JN (2015) Comparative analysis of transposable elements highlights mobilome diversity and evolution in vertebrates. Genome Biol Evol 7:567–580
    • (2015) Genome Biol Evol , vol.7 , pp. 567-580
    • Chalopin, D.1    Naville, M.2    Plard, F.3    Galiana, D.4    Volff, J.N.5
  • 27
    • 51349160670 scopus 로고    scopus 로고
    • Transcriptomic and genomic evolution under constant cold in Antarctic notothenioid fish
    • COI: 1:CAS:528:DC%2BD1cXhtFSjsbjM, PID: 18753634
    • Chen Z, Cheng CH, Zhang J et al (2008) Transcriptomic and genomic evolution under constant cold in Antarctic notothenioid fish. Proc Natl Acad Sci U S A 105:12944–12949
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 12944-12949
    • Chen, Z.1    Cheng, C.H.2    Zhang, J.3
  • 28
    • 58449095204 scopus 로고    scopus 로고
    • Using Alu elements as polyadenylation sites: a case of retroposon exaptation
    • COI: 1:CAS:528:DC%2BD1MXntVeqtA%3D%3D, PID: 18984903
    • Chen C, Ara T, Gautheret D (2009) Using Alu elements as polyadenylation sites: a case of retroposon exaptation. Mol Biol Evol 26:327–334
    • (2009) Mol Biol Evol , vol.26 , pp. 327-334
    • Chen, C.1    Ara, T.2    Gautheret, D.3
  • 29
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • PID: 12466850
    • Chinwalla AT, Cook LL, Delehaunty KD et al (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420:520–562
    • (2002) Nature , vol.420 , pp. 520-562
    • Chinwalla, A.T.1    Cook, L.L.2    Delehaunty, K.D.3
  • 30
    • 55549130502 scopus 로고    scopus 로고
    • Evidence that SIZN1 is a candidate X-linked mental retardation gene
    • COI: 1:CAS:528:DC%2BD1MXitVWgtb4%3D, PID: 18798319
    • Cho G, Bhat SS, Gao J et al (2008a) Evidence that SIZN1 is a candidate X-linked mental retardation gene. Am J Med Genet A 146A:2644–2650
    • (2008) Am J Med Genet A , vol.146A , pp. 2644-2650
    • Cho, G.1    Bhat, S.S.2    Gao, J.3
  • 31
    • 40749122613 scopus 로고    scopus 로고
    • Sizn1 is a novel protein that functions as a transcriptional coactivator of bone morphogenic protein signaling
    • COI: 1:CAS:528:DC%2BD1cXivVajt70%3D, PID: 18160706
    • Cho G, Lim Y, Zand D, Golden JA (2008b) Sizn1 is a novel protein that functions as a transcriptional coactivator of bone morphogenic protein signaling. Mol Cell Biol 28:1565–1572
    • (2008) Mol Cell Biol , vol.28 , pp. 1565-1572
    • Cho, G.1    Lim, Y.2    Zand, D.3    Golden, J.A.4
  • 32
    • 79953052805 scopus 로고    scopus 로고
    • XLMR candidate mouse gene, Zcchc12 (Sizn1) is a novel marker of Cajal-Retzius cells
    • COI: 1:CAS:528:DC%2BC3MXjvV2rsbY%3D, PID: 21172456
    • Cho G, Lim Y, Golden JA (2011) XLMR candidate mouse gene, Zcchc12 (Sizn1) is a novel marker of Cajal-Retzius cells. Gene Expr Patterns 11:216–200
    • (2011) Gene Expr Patterns , vol.11 , pp. 200-216
    • Cho, G.1    Lim, Y.2    Golden, J.A.3
  • 33
    • 84874663519 scopus 로고    scopus 로고
    • Endogenous retroviruses function as species-specific enhancer elements in the placenta
    • COI: 1:CAS:528:DC%2BC3sXit1ahtLk%3D, PID: 23396136
    • Chuong EB, Rumi MAK, Soares MJ, Baker JC (2013) Endogenous retroviruses function as species-specific enhancer elements in the placenta. Nat Genet 45:325–329
    • (2013) Nat Genet , vol.45 , pp. 325-329
    • Chuong, E.B.1    Rumi, M.A.K.2    Soares, M.J.3    Baker, J.C.4
  • 34
    • 33744497802 scopus 로고    scopus 로고
    • Birth of a chimeric primate gene by capture of the transposase gene from a mobile element
    • COI: 1:CAS:528:DC%2BD28Xlt1Cht7w%3D, PID: 16672366
    • Cordaux R, Udit S, Batzer MA, Feschotte C (2006) Birth of a chimeric primate gene by capture of the transposase gene from a mobile element. Proc Natl Acad Sci U S A 103:8101–8106
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 8101-8106
    • Cordaux, R.1    Udit, S.2    Batzer, M.A.3    Feschotte, C.4
  • 35
    • 84857124504 scopus 로고    scopus 로고
    • Ancestral capture of syncytin-Car1, a fusogenic endogenous retroviral envelope gene involved in placentation and conserved in Carnivora
    • COI: 1:CAS:528:DC%2BC38XivVOjtLY%3D, PID: 22308384
    • Cornelis G, Heidmann O, Bernard-Stoecklin S et al (2012) Ancestral capture of syncytin-Car1, a fusogenic endogenous retroviral envelope gene involved in placentation and conserved in Carnivora. Proc Natl Acad Sci U S A 109:E432–E441
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. E432-E441
    • Cornelis, G.1    Heidmann, O.2    Bernard-Stoecklin, S.3
  • 36
    • 84874453328 scopus 로고    scopus 로고
    • Captured retroviral envelope syncytin gene associated with the unique placental structure of higher ruminants
    • COI: 1:CAS:528:DC%2BC3sXkvVyrtLs%3D, PID: 23401540
    • Cornelis G, Heidmann O, Degrelle SA et al (2013) Captured retroviral envelope syncytin gene associated with the unique placental structure of higher ruminants. Proc Natl Acad Sci U S A 110:E828–E837
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. E828-E837
    • Cornelis, G.1    Heidmann, O.2    Degrelle, S.A.3
  • 37
    • 84907898472 scopus 로고    scopus 로고
    • Retroviral envelope syncytin capture in an ancestrally diverged mammalian clade for placentation in the primitive Afrotherian tenrecs
    • COI: 1:CAS:528:DC%2BC2cXhs1ChtrbI, PID: 25267646
    • Cornelis G, Vernochet C, Malicorne S et al (2014) Retroviral envelope syncytin capture in an ancestrally diverged mammalian clade for placentation in the primitive Afrotherian tenrecs. Proc Natl Acad Sci 111:E4332–E4341
    • (2014) Proc Natl Acad Sci , vol.111 , pp. E4332-E4341
    • Cornelis, G.1    Vernochet, C.2    Malicorne, S.3
  • 38
    • 84922309125 scopus 로고    scopus 로고
    • Retroviral envelope gene captures and syncytin exaptation for placentation in marsupials
    • COI: 1:CAS:528:DC%2BC2MXhtFKht74%3D, PID: 25605903
    • Cornelis G, Vernochet C, Carradec Q et al (2015) Retroviral envelope gene captures and syncytin exaptation for placentation in marsupials. Proc Natl Acad Sci U S A 112:E487–E496
    • (2015) Proc Natl Acad Sci U S A , vol.112 , pp. E487-E496
    • Cornelis, G.1    Vernochet, C.2    Carradec, Q.3
  • 39
    • 84879911829 scopus 로고    scopus 로고
    • The evolution of lineage-specific regulatory activities in the human embryonic limb
    • COI: 1:CAS:528:DC%2BC3sXhtVGrsrbF, PID: 23827682
    • Cotney J, Leng J, Yin J et al (2013) The evolution of lineage-specific regulatory activities in the human embryonic limb. Cell 154:185–196
    • (2013) Cell , vol.154 , pp. 185-196
    • Cotney, J.1    Leng, J.2    Yin, J.3
  • 40
    • 84873507928 scopus 로고    scopus 로고
    • Transposable elements re-wire and fine-tune the transcriptome
    • COI: 1:CAS:528:DC%2BC3sXivVehtbk%3D, PID: 23358118
    • Cowley M, Oakey RJ (2013) Transposable elements re-wire and fine-tune the transcriptome. PLoS Genet 9:e1003234
    • (2013) PLoS Genet , vol.9 , pp. e1003234
    • Cowley, M.1    Oakey, R.J.2
  • 41
    • 0032574346 scopus 로고    scopus 로고
    • The evolutionary genetics of speciation
    • COI: 1:STN:280:DyaK1c7psVehsw%3D%3D, PID: 9533126
    • Coyne JA, Orr HA (1998) The evolutionary genetics of speciation. Philos Trans R Soc Lond B Biol Sci 353:287–305
    • (1998) Philos Trans R Soc Lond B Biol Sci , vol.353 , pp. 287-305
    • Coyne, J.A.1    Orr, H.A.2
  • 42
    • 0029156092 scopus 로고
    • Characterization and genomic mapping of the ZNF80 locus: expression of this zinc-finger gene is driven by a solitary LTR of ERV9 endogenous retrovrial family
    • PID: 7659503
    • Cristofano AD, Strazzullo M, Longo L, Mantia GL (1995) Characterization and genomic mapping of the ZNF80 locus: expression of this zinc-finger gene is driven by a solitary LTR of ERV9 endogenous retrovrial family. Nucl Acids Res 23:2823–2830
    • (1995) Nucl Acids Res , vol.23 , pp. 2823-2830
    • Cristofano, A.D.1    Strazzullo, M.2    Longo, L.3    Mantia, G.L.4
  • 43
    • 78650855113 scopus 로고    scopus 로고
    • Impact of Alu repeats on the evolution of human p53 binding sites
    • COI: 1:CAS:528:DC%2BC3MXhsFWitr0%3D, PID: 21208455
    • Cui F, Sirotin MV, Zhurkin VB (2011) Impact of Alu repeats on the evolution of human p53 binding sites. Biol Direct 6:2
    • (2011) Biol Direct , vol.6 , pp. 2
    • Cui, F.1    Sirotin, M.V.2    Zhurkin, V.B.3
  • 44
    • 33947208484 scopus 로고    scopus 로고
    • The tightly regulated promoter of the xanA gene of Aspergillus nidulans is included in a helitron
    • COI: 1:CAS:528:DC%2BD2sXksVWlsLs%3D, PID: 17367381
    • Cultrone A, Domínguez YR, Drevet C, Scazzocchio C, Fernández-Martín R (2007) The tightly regulated promoter of the xanA gene of Aspergillus nidulans is included in a helitron. Mol Microbiol 63:1577–1587
    • (2007) Mol Microbiol , vol.63 , pp. 1577-1587
    • Cultrone, A.1    Domínguez, Y.R.2    Drevet, C.3    Scazzocchio, C.4    Fernández-Martín, R.5
  • 45
    • 38149117037 scopus 로고    scopus 로고
    • Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids
    • PID: 18021408
    • de Boer JG, Yazawa R, Davidson WS, Koop BF (2007) Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids. BMC Genomics 8:422
    • (2007) BMC Genomics , vol.8 , pp. 422
    • de Boer, J.G.1    Yazawa, R.2    Davidson, W.S.3    Koop, B.F.4
  • 46
    • 84877749322 scopus 로고    scopus 로고
    • Exaptation of transposable elements into novel cis-regulatory elements: is the evidence always strong?
    • PID: 23486611
    • de Souza FSJ, Franchini LF, Rubinstein M (2013) Exaptation of transposable elements into novel cis-regulatory elements: is the evidence always strong? Mol Biol Evol 30:1239–1251
    • (2013) Mol Biol Evol , vol.30 , pp. 1239-1251
    • de Souza, F.S.J.1    Franchini, L.F.2    Rubinstein, M.3
  • 47
    • 84855199454 scopus 로고    scopus 로고
    • Alu elements: know the SINEs
    • COI: 1:CAS:528:DC%2BC38XhtVyis7o%3D, PID: 22204421
    • Deininger P (2011a) Alu elements: know the SINEs. Genome Biol 12:236
    • (2011) Genome Biol , vol.12 , pp. 236
    • Deininger, P.1
  • 49
    • 0032796376 scopus 로고    scopus 로고
    • Alu repeats and human disease
    • COI: 1:CAS:528:DyaK1MXjvFWrtr4%3D, PID: 10381326
    • Deininger PL, Batzer MA (1999) Alu repeats and human disease. Mol Genet Metab 67:183–193
    • (1999) Mol Genet Metab , vol.67 , pp. 183-193
    • Deininger, P.L.1    Batzer, M.A.2
  • 50
    • 84907217918 scopus 로고    scopus 로고
    • Noncoding origins of anthropoid traits and a new null model of transposon functionalization
    • PID: 25043600
    • del Rosario RCH, Rayan NA, Prabhakar S (2014) Noncoding origins of anthropoid traits and a new null model of transposon functionalization. Genome Res 24:1469–1484
    • (2014) Genome Res , vol.24 , pp. 1469-1484
    • del Rosario, R.C.H.1    Rayan, N.A.2    Prabhakar, S.3
  • 51
    • 84865727393 scopus 로고    scopus 로고
    • The GENCODE v7 catalogue of human long non-coding RNAs: analysis of their structure, evolution and expression
    • COI: 1:CAS:528:DC%2BC38XhtlentLvO, PID: 22955988
    • Derrien T, Johnson R, Bussotti G et al (2012) The GENCODE v7 catalogue of human long non-coding RNAs: analysis of their structure, evolution and expression. Genome Res 22:1775–1789
    • (2012) Genome Res , vol.22 , pp. 1775-1789
    • Derrien, T.1    Johnson, R.2    Bussotti, G.3
  • 52
    • 84899528769 scopus 로고    scopus 로고
    • RNA-seq reveals transcriptomic shock involving transposable elements reactivation in hybrids of young lake whitefish species
    • COI: 1:CAS:528:DC%2BC2cXmvFCitL4%3D, PID: 24505119
    • Dion-Cote AM, Renaut S, Normandeau E, Bernatchez L (2014) RNA-seq reveals transcriptomic shock involving transposable elements reactivation in hybrids of young lake whitefish species. Mol Biol Evol 31:1188–1199
    • (2014) Mol Biol Evol , vol.31 , pp. 1188-1199
    • Dion-Cote, A.M.1    Renaut, S.2    Normandeau, E.3    Bernatchez, L.4
  • 53
    • 84865757142 scopus 로고    scopus 로고
    • Landscape of transcription in human cells
    • COI: 1:CAS:528:DC%2BC38XhtlGnt73M, PID: 22955620
    • Djebali S, Davis CA, Merkel A et al (2012) Landscape of transcription in human cells. Nature 489:101–108
    • (2012) Nature , vol.489 , pp. 101-108
    • Djebali, S.1    Davis, C.A.2    Merkel, A.3
  • 55
    • 84940767554 scopus 로고    scopus 로고
    • HTT-DB: Horizontally transferred transposable elements database
    • PID: 25940562
    • Dotto BR, Carvalho EL, Silva AF et al (2015) HTT-DB: Horizontally transferred transposable elements database. Bioinformatics 31:2915–2917
    • (2015) Bioinformatics , vol.31 , pp. 2915-2917
    • Dotto, B.R.1    Carvalho, E.L.2    Silva, A.F.3
  • 56
    • 84885215226 scopus 로고    scopus 로고
    • Systematic classification of non-coding RNAs by epigenomic similarity
    • Dozmorov MG, Giles CB, Koelsch KA, Wren JD (2013) Systematic classification of non-coding RNAs by epigenomic similarity. BMC Bioinf 14:S2
    • (2013) BMC Bioinf , vol.14 , pp. S2
    • Dozmorov, M.G.1    Giles, C.B.2    Koelsch, K.A.3    Wren, J.D.4
  • 57
    • 14144254156 scopus 로고    scopus 로고
    • Syncytin-A and syncytin-B, two fusogenic placenta-specific murine envelope genes of retroviral origin conserved in Muridae
    • COI: 1:CAS:528:DC%2BD2MXis1CqsL4%3D, PID: 15644441
    • Dupressoir A, Marceau G, Vernochet C et al (2005) Syncytin-A and syncytin-B, two fusogenic placenta-specific murine envelope genes of retroviral origin conserved in Muridae. Proc Natl Acad Sci U S A 102:725–730
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 725-730
    • Dupressoir, A.1    Marceau, G.2    Vernochet, C.3
  • 58
    • 25144467005 scopus 로고    scopus 로고
    • The SCAN domain family of zinc finger transcription factors
    • COI: 1:CAS:528:DC%2BD2MXhtVanu7nE, PID: 16139965
    • Edelstein LC, Collins T (2005) The SCAN domain family of zinc finger transcription factors. Gene 359:1–17
    • (2005) Gene , vol.359 , pp. 1-17
    • Edelstein, L.C.1    Collins, T.2
  • 59
    • 45849118721 scopus 로고    scopus 로고
    • The evolution of the DLK1-DIO3 imprinted domain in mammals
    • COI: 1:CAS:528:DC%2BD1cXotVejtL8%3D
    • Edwards CA, Mungall AJ, Matthews L et al (2008) The evolution of the DLK1-DIO3 imprinted domain in mammals. PLoS Biol 6:1292–1305
    • (2008) PLoS Biol , vol.6 , pp. 1292-1305
    • Edwards, C.A.1    Mungall, A.J.2    Matthews, L.3
  • 60
    • 49649094943 scopus 로고    scopus 로고
    • A dual origin of the Xist gene from a protein-coding gene and a set of transposable elements
    • Elisaphenko EA, Kolesnikov NN, Shevchenko AI et al (2008) A dual origin of the Xist gene from a protein-coding gene and a set of transposable elements. PLoS One 3:1–11
    • (2008) PLoS One , vol.3 , pp. 1-11
    • Elisaphenko, E.A.1    Kolesnikov, N.N.2    Shevchenko, A.I.3
  • 61
    • 84863946845 scopus 로고    scopus 로고
    • Transformation of a transposon into a derived prolactin promoter with function during human pregnancy
    • COI: 1:CAS:528:DC%2BC38Xht1WrurjJ, PID: 22733751
    • Emera D, Wagner GP (2012a) Transformation of a transposon into a derived prolactin promoter with function during human pregnancy. Proc Natl Acad Sci U S A 109:11246–11251
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 11246-11251
    • Emera, D.1    Wagner, G.P.2
  • 62
    • 84863918449 scopus 로고    scopus 로고
    • Transposable element recruitments in the mammalian placenta: impacts and mechanisms
    • COI: 1:CAS:528:DC%2BC38XhtFantrbI, PID: 22753775
    • Emera D, Wagner GP (2012b) Transposable element recruitments in the mammalian placenta: impacts and mechanisms. Brief Funct Genomics 11:267–276
    • (2012) Brief Funct Genomics , vol.11 , pp. 267-276
    • Emera, D.1    Wagner, G.P.2
  • 63
    • 84861320913 scopus 로고    scopus 로고
    • Convergent evolution of endometrial prolactin expression in primates, mice, and elephants through the independent recruitment of transposable elements
    • COI: 1:CAS:528:DC%2BC3MXhs1ynur3N, PID: 21813467
    • Emera D, Casola C, Lynch VJ, Wildman DE, Agnew D, Wagner GP (2012) Convergent evolution of endometrial prolactin expression in primates, mice, and elephants through the independent recruitment of transposable elements. Mol Biol Evol 29:239–247
    • (2012) Mol Biol Evol , vol.29 , pp. 239-247
    • Emera, D.1    Casola, C.2    Lynch, V.J.3    Wildman, D.E.4    Agnew, D.5    Wagner, G.P.6
  • 64
    • 58949084539 scopus 로고    scopus 로고
    • Adaptive evolution in zinc finger transcription factors
    • PID: 19119423
    • Emerson RO, Thomas JH (2009) Adaptive evolution in zinc finger transcription factors. PLoS Genet 5:e1000325
    • (2009) PLoS Genet , vol.5 , pp. e1000325
    • Emerson, R.O.1    Thomas, J.H.2
  • 65
    • 81255184397 scopus 로고    scopus 로고
    • Retrofitting the genome: L1 extinction follows endogenous retroviral expansion in a group of muroid rodents
    • PID: 21957310
    • Erickson IK, Cantrell MA, Scott L, Wichman HA (2011) Retrofitting the genome: L1 extinction follows endogenous retroviral expansion in a group of muroid rodents. J Virol 85:12315–12323
    • (2011) J Virol , vol.85 , pp. 12315-12323
    • Erickson, I.K.1    Cantrell, M.A.2    Scott, L.3    Wichman, H.A.4
  • 66
    • 4143085887 scopus 로고    scopus 로고
    • Merlin, a new superfamily of DNA transposons identified in diverse animal genomes and related to bacterial IS1016 insertion sequences
    • COI: 1:CAS:528:DC%2BD2cXntVCitbw%3D, PID: 15190130
    • Feschotte C (2004) Merlin, a new superfamily of DNA transposons identified in diverse animal genomes and related to bacterial IS1016 insertion sequences. Mol Biol Evol 21:1769–1780
    • (2004) Mol Biol Evol , vol.21 , pp. 1769-1780
    • Feschotte, C.1
  • 67
    • 42349096534 scopus 로고    scopus 로고
    • Transposable elements and the evolution of regulatory networks
    • COI: 1:CAS:528:DC%2BD1cXkvVOhs7k%3D, PID: 18368054
    • Feschotte C (2008) Transposable elements and the evolution of regulatory networks. Nat Rev Genet 9:397–405
    • (2008) Nat Rev Genet , vol.9 , pp. 397-405
    • Feschotte, C.1
  • 68
    • 37549029474 scopus 로고    scopus 로고
    • DNA transposons and the evolution of eukaryotic genomes
    • COI: 1:CAS:528:DC%2BD1cXns1Sisw%3D%3D, PID: 18076328
    • Feschotte C, Pritham EJ (2007) DNA transposons and the evolution of eukaryotic genomes. Annu Rev Genet 41:331–368
    • (2007) Annu Rev Genet , vol.41 , pp. 331-368
    • Feschotte, C.1    Pritham, E.J.2
  • 69
    • 84901651635 scopus 로고    scopus 로고
    • Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance
    • COI: 1:CAS:528:DC%2BC2cXmvFSjt7w%3D, PID: 24777452
    • Fort A, Hashimoto K, Yamada D et al (2014) Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance. Nat Genet 46:558–566
    • (2014) Nat Genet , vol.46 , pp. 558-566
    • Fort, A.1    Hashimoto, K.2    Yamada, D.3
  • 70
    • 80053067142 scopus 로고    scopus 로고
    • Convergent evolution of two mammalian neuronal enhancers by sequential exaptation of unrelated retroposons
    • COI: 1:CAS:528:DC%2BC3MXht1Gqt7%2FE, PID: 21876128
    • Franchini LF, López-Leal R, Nasif S et al (2011) Convergent evolution of two mammalian neuronal enhancers by sequential exaptation of unrelated retroposons. Proc Natl Acad Sci U S A 108:15270–15275
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 15270-15275
    • Franchini, L.F.1    López-Leal, R.2    Nasif, S.3
  • 71
    • 60149095444 scopus 로고    scopus 로고
    • Most mammalian mRNAs are conserved targets of microRNAs
    • COI: 1:CAS:528:DC%2BD1MXptFWjuw%3D%3D, PID: 18955434
    • Friedman RC, Farh KKH, Burge CB, Bartel DP (2009) Most mammalian mRNAs are conserved targets of microRNAs. Genome Res 19:92–105
    • (2009) Genome Res , vol.19 , pp. 92-105
    • Friedman, R.C.1    Farh, K.K.H.2    Burge, C.B.3    Bartel, D.P.4
  • 72
    • 78549247150 scopus 로고    scopus 로고
    • The rapid generation of chimerical genes expanding protein diversity in zebrafish
    • COI: 1:CAS:528:DC%2BC3cXhsFagt73F, PID: 21106061
    • Fu B, Chen M, Zou M, Long M, He S (2010) The rapid generation of chimerical genes expanding protein diversity in zebrafish. BMC Genomics 11:657
    • (2010) BMC Genomics , vol.11 , pp. 657
    • Fu, B.1    Chen, M.2    Zou, M.3    Long, M.4    He, S.5
  • 73
    • 0348048755 scopus 로고    scopus 로고
    • L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish
    • COI: 1:CAS:528:DC%2BD3sXpvFyrsbs%3D, PID: 14698614
    • Furano AV, Duvernell DD, Boissinot S (2004) L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish. Trends Genet 20:9–14
    • (2004) Trends Genet , vol.20 , pp. 9-14
    • Furano, A.V.1    Duvernell, D.D.2    Boissinot, S.3
  • 74
    • 34248512741 scopus 로고    scopus 로고
    • Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica
    • COI: 1:CAS:528:DC%2BD2sXnvVWktbc%3D, PID: 17495012
    • Gentles AJ, Wakefield MJ, Kohany O et al (2007) Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica. Genome Res 17:992–1004
    • (2007) Genome Res , vol.17 , pp. 992-1004
    • Gentles, A.J.1    Wakefield, M.J.2    Kohany, O.3
  • 75
    • 84876799419 scopus 로고    scopus 로고
    • Transposable elements as genetic regulatory substrates in early development
    • COI: 1:CAS:528:DC%2BC3sXisVSgsLY%3D, PID: 23411159
    • Gifford WD, Pfaff SL, Macfarlan TS (2013) Transposable elements as genetic regulatory substrates in early development. Trends Cell Biol 23:218–226
    • (2013) Trends Cell Biol , vol.23 , pp. 218-226
    • Gifford, W.D.1    Pfaff, S.L.2    Macfarlan, T.S.3
  • 76
    • 77951778552 scopus 로고    scopus 로고
    • A role for host-parasite interactions in the horizontal transfer of transposons across phyla
    • COI: 1:CAS:528:DC%2BC3cXltl2ltrY%3D, PID: 20428170
    • Gilbert C, Schaack S, Pace JK 2nd, Brindley PJ, Feschotte C (2010) A role for host-parasite interactions in the horizontal transfer of transposons across phyla. Nature 464:1347–1350
    • (2010) Nature , vol.464 , pp. 1347-1350
    • Gilbert, C.1    Schaack, S.2    Pace, J.K.3    Brindley, P.J.4    Feschotte, C.5
  • 77
    • 84855898254 scopus 로고    scopus 로고
    • Rampant horizontal transfer of SPIN transposons in squamate reptiles
    • COI: 1:CAS:528:DC%2BC38Xos1Sisw%3D%3D, PID: 21771716
    • Gilbert C, Hernandez SS, Flores-Benabib J, Smith EN, Feschotte C (2012) Rampant horizontal transfer of SPIN transposons in squamate reptiles. Mol Biol Evol 29:503–515
    • (2012) Mol Biol Evol , vol.29 , pp. 503-515
    • Gilbert, C.1    Hernandez, S.S.2    Flores-Benabib, J.3    Smith, E.N.4    Feschotte, C.5
  • 78
    • 84947495588 scopus 로고    scopus 로고
    • Genome-wide identification and classification of microRNAs derived from repetitive elements
    • PID: 25705168
    • Gim JA, Ha HS, Ahn K, Kim DS, Kim HS (2014) Genome-wide identification and classification of microRNAs derived from repetitive elements. Genomics Inform 12:261–267
    • (2014) Genomics Inform , vol.12 , pp. 261-267
    • Gim, J.A.1    Ha, H.S.2    Ahn, K.3    Kim, D.S.4    Kim, H.S.5
  • 79
    • 84979851107 scopus 로고    scopus 로고
    • Transposable elements and DNA methylation create in embryonic stem cells human-specific regulatory sequences associated with distal enhancers and noncoding RNAs
    • COI: 1:CAS:528:DC%2BC2MXhs1Wiu73I, PID: 25956794
    • Glinsky GV (2015) Transposable elements and DNA methylation create in embryonic stem cells human-specific regulatory sequences associated with distal enhancers and noncoding RNAs. Genome Biol Evol 7:1432–1454
    • (2015) Genome Biol Evol , vol.7 , pp. 1432-1454
    • Glinsky, G.V.1
  • 80
    • 68049102316 scopus 로고    scopus 로고
    • Exaptation of an ancient Alu short interspersed element provides a highly conserved vitamin D-mediated innate immune response in humans and primates
    • PID: 19607716
    • Gombart AF, Saito T, Koeffler HP (2009) Exaptation of an ancient Alu short interspersed element provides a highly conserved vitamin D-mediated innate immune response in humans and primates. BMC Genomics 10:321
    • (2009) BMC Genomics , vol.10 , pp. 321
    • Gombart, A.F.1    Saito, T.2    Koeffler, H.P.3
  • 81
    • 23844436019 scopus 로고    scopus 로고
    • Extinction of LINE-1 activity coincident with a major mammalian radiation in rodents
    • COI: 1:STN:280:DC%2BD2Mvislekuw%3D%3D, PID: 16093693
    • Grahn RA, Rinehart TA, Cantrell MA, Wichman HA (2005) Extinction of LINE-1 activity coincident with a major mammalian radiation in rodents. Cytogenet Genome Res 110:407–415
    • (2005) Cytogenet Genome Res , vol.110 , pp. 407-415
    • Grahn, R.A.1    Rinehart, T.A.2    Cantrell, M.A.3    Wichman, H.A.4
  • 82
    • 84904985459 scopus 로고    scopus 로고
    • Regulation of microRNA biogenesis
    • COI: 1:CAS:528:DC%2BC2cXhtFGqu7nP, PID: 25027649
    • Ha M, Kim VN (2014) Regulation of microRNA biogenesis. Nat Rev Mol Cell Biol 15:509–524
    • (2014) Nat Rev Mol Cell Biol , vol.15 , pp. 509-524
    • Ha, M.1    Kim, V.N.2
  • 83
    • 0030845714 scopus 로고    scopus 로고
    • Chicken repeat 1 (CR1) elements, which define an ancient family of vertebrate non-LTR retrotransposons, contain two closely spaced open reading frames
    • COI: 1:CAS:528:DyaK2sXlsFGmsLg%3D, PID: 9332379
    • Haas NB, Grabowski JM, Sivitz AB, Burch JBE (1997) Chicken repeat 1 (CR1) elements, which define an ancient family of vertebrate non-LTR retrotransposons, contain two closely spaced open reading frames. Gene 197:305–309
    • (1997) Gene , vol.197 , pp. 305-309
    • Haas, N.B.1    Grabowski, J.M.2    Sivitz, A.B.3    Burch, J.B.E.4
  • 84
    • 0027379052 scopus 로고
    • Identification and characterization of an Alu-containing, T-cell-specific enhancer located in the last intron of the human CD8 alpha gene
    • COI: 1:CAS:528:DyaK2cXisV2hug%3D%3D, PID: 8413295
    • Hambor JE, Mennone J, Coon ME, Hanke JH, Kavathas P (1993) Identification and characterization of an Alu-containing, T-cell-specific enhancer located in the last intron of the human CD8 alpha gene. Mol Cell Biol 13:7056–7070
    • (1993) Mol Cell Biol , vol.13 , pp. 7056-7070
    • Hambor, J.E.1    Mennone, J.2    Coon, M.E.3    Hanke, J.H.4    Kavathas, P.5
  • 85
    • 84885086234 scopus 로고    scopus 로고
    • Identification and evolution of the silkworm helitrons and their contribution to transcripts
    • COI: 1:CAS:528:DC%2BC3sXhsFOju7fJ, PID: 23771679
    • Han MJ, Shen YH, Xu MS, Liang HY, Zhang HH, Zhang Z (2013) Identification and evolution of the silkworm helitrons and their contribution to transcripts. DNA Res 20:471–484
    • (2013) DNA Res , vol.20 , pp. 471-484
    • Han, M.J.1    Shen, Y.H.2    Xu, M.S.3    Liang, H.Y.4    Zhang, H.H.5    Zhang, Z.6
  • 86
    • 70449098000 scopus 로고    scopus 로고
    • p53 responsive elements in human retrotransposons
    • COI: 1:CAS:528:DC%2BD1MXhtVKhs7rN, PID: 19718052
    • Harris CR, Dewan A, Zupnick A et al (2009) p53 responsive elements in human retrotransposons. Oncogene 28:3857–3865
    • (2009) Oncogene , vol.28 , pp. 3857-3865
    • Harris, C.R.1    Dewan, A.2    Zupnick, A.3
  • 87
    • 0035949607 scopus 로고    scopus 로고
    • Alu-mediated inactivation of the human CMP- N-acetylneuraminic acid hydroxylase gene
    • COI: 1:CAS:528:DC%2BD3MXnt1yqur8%3D, PID: 11562455
    • Hayakawa T, Satta Y, Gagneux P, Varki A, Takahata N (2001) Alu-mediated inactivation of the human CMP- N-acetylneuraminic acid hydroxylase gene. Proc Natl Acad Sci U S A 98:11399–11404
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 11399-11404
    • Hayakawa, T.1    Satta, Y.2    Gagneux, P.3    Varki, A.4    Takahata, N.5
  • 88
    • 84920982305 scopus 로고    scopus 로고
    • Pan-vertebrate comparative genomics unmasks retrovirus macroevolution
    • COI: 1:CAS:528:DC%2BC2cXitFCqs7zN, PID: 25535393
    • Hayward A, Cornwallis CK, Jern P (2015) Pan-vertebrate comparative genomics unmasks retrovirus macroevolution. Proc Natl Acad Sci U S A 112:464–469
    • (2015) Proc Natl Acad Sci U S A , vol.112 , pp. 464-469
    • Hayward, A.1    Cornwallis, C.K.2    Jern, P.3
  • 89
    • 84887376115 scopus 로고    scopus 로고
    • ANRIL/CDKN2B-AS shows two-stage clade-specific evolution and becomes conserved after transposon insertions in simians
    • PID: 24225082
    • He S, Gu W, Li Y, Zhu H (2013) ANRIL/CDKN2B-AS shows two-stage clade-specific evolution and becomes conserved after transposon insertions in simians. BMC Evol Biol 13:247
    • (2013) BMC Evol Biol , vol.13 , pp. 247
    • He, S.1    Gu, W.2    Li, Y.3    Zhu, H.4
  • 90
    • 71949099774 scopus 로고    scopus 로고
    • Identification of an endogenous retroviral envelope gene with fusogenic activity and placenta-specific expression in the rabbit: a new “syncytin” in a third order of mammals
    • PID: 19943933
    • Heidmann O, Vernochet C, Dupressoir A, Heidmann T (2009) Identification of an endogenous retroviral envelope gene with fusogenic activity and placenta-specific expression in the rabbit: a new “syncytin” in a third order of mammals. Retrovirology 6:107
    • (2009) Retrovirology , vol.6 , pp. 107
    • Heidmann, O.1    Vernochet, C.2    Dupressoir, A.3    Heidmann, T.4
  • 91
    • 77951823093 scopus 로고    scopus 로고
    • The genome of the Western clawed frog Xenopus tropicalis
    • COI: 1:CAS:528:DC%2BC3cXlt1Crt70%3D, PID: 20431018
    • Hellsten U, Harland RM, Gilchrist MJ et al (2010) The genome of the Western clawed frog Xenopus tropicalis. Science 328:633–636
    • (2010) Science , vol.328 , pp. 633-636
    • Hellsten, U.1    Harland, R.M.2    Gilchrist, M.J.3
  • 92
    • 84924120484 scopus 로고    scopus 로고
    • Selective expression of sense and antisense transcripts of the sushi-ichi-related retrotransposon—derived family during mouse placentogenesis
    • PID: 25888968
    • Henke C, Strissel PL, Schubert MT et al (2015) Selective expression of sense and antisense transcripts of the sushi-ichi-related retrotransposon—derived family during mouse placentogenesis. Retrovirology 12:9
    • (2015) Retrovirology , vol.12 , pp. 9
    • Henke, C.1    Strissel, P.L.2    Schubert, M.T.3
  • 93
    • 63449117467 scopus 로고    scopus 로고
    • Segmental copy number variation shapes tissue transcriptomes
    • COI: 1:CAS:528:DC%2BD1MXivVKnur8%3D, PID: 19270705
    • Henrichsen CN, Vinckenbosch N, Zöllner S et al (2009) Segmental copy number variation shapes tissue transcriptomes. Nat Genet 41:424–429
    • (2009) Nat Genet , vol.41 , pp. 424-429
    • Henrichsen, C.N.1    Vinckenbosch, N.2    Zöllner, S.3
  • 94
    • 77649269711 scopus 로고    scopus 로고
    • Transcriptional rewiring of the sex determining dmrt1 gene duplicate by transposable elements
    • PID: 20169179
    • Herpin A, Braasch I, Kraeussling M et al (2010) Transcriptional rewiring of the sex determining dmrt1 gene duplicate by transposable elements. PLoS Genet 6:e1000844
    • (2010) PLoS Genet , vol.6 , pp. e1000844
    • Herpin, A.1    Braasch, I.2    Kraeussling, M.3
  • 95
    • 84929705123 scopus 로고    scopus 로고
    • Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species
    • COI: 1:CAS:528:DC%2BC2MXotVCmtb4%3D, PID: 25959816
    • Hezroni H, Koppstein D, Schwartz MG, Avrutin A, Bartel DP, Ulitsky I (2015) Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species. Cell Rep 11:1110–1122
    • (2015) Cell Rep , vol.11 , pp. 1110-1122
    • Hezroni, H.1    Koppstein, D.2    Schwartz, M.G.3    Avrutin, A.4    Bartel, D.P.5    Ulitsky, I.6
  • 96
    • 37549067404 scopus 로고    scopus 로고
    • Evolution of the Xenopus piggyBac transposon family TxpB: domesticated and untamed strategies of transposon subfamilies
    • COI: 1:CAS:528:DC%2BD1cXnsVGjug%3D%3D, PID: 17934208
    • Hikosaka A, Kobayashi T, Saito Y, Kawahara A (2007) Evolution of the Xenopus piggyBac transposon family TxpB: domesticated and untamed strategies of transposon subfamilies. Mol Biol Evol 24:2648–2656
    • (2007) Mol Biol Evol , vol.24 , pp. 2648-2656
    • Hikosaka, A.1    Kobayashi, T.2    Saito, Y.3    Kawahara, A.4
  • 97
    • 10644283823 scopus 로고    scopus 로고
    • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    • COI: 1:CAS:528:DC%2BD2cXhtVGmtb7M
    • Hillier L, Miller W, Birney E et al (2004) Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432:695–716
    • (2004) Nature , vol.432 , pp. 695-716
    • Hillier, L.1    Miller, W.2    Birney, E.3
  • 98
    • 84880799429 scopus 로고    scopus 로고
    • Alu elements in ANRIL non-coding RNA at chromosome 9p21 modulate atherogenic cell functions through trans-regulation of gene networks
    • Holdt LM, Hoffmann S, Sass K et al (2013) Alu elements in ANRIL non-coding RNA at chromosome 9p21 modulate atherogenic cell functions through trans-regulation of gene networks. PLoS Genet 9:1–12
    • (2013) PLoS Genet , vol.9 , pp. 1-12
    • Holdt, L.M.1    Hoffmann, S.2    Sass, K.3
  • 99
    • 35848941492 scopus 로고    scopus 로고
    • Population and evolutionary dynamics of helitron transposable elements in Arabidopsis thaliana
    • COI: 1:CAS:528:DC%2BD2sXhtlGmsbfE, PID: 17890239
    • Hollister JD, Gaut BS (2007) Population and evolutionary dynamics of helitron transposable elements in Arabidopsis thaliana. Mol Biol Evol 24:2515–2524
    • (2007) Mol Biol Evol , vol.24 , pp. 2515-2524
    • Hollister, J.D.1    Gaut, B.S.2
  • 100
    • 84876798186 scopus 로고    scopus 로고
    • The zebrafish reference genome sequence and its relationship to the human genome
    • COI: 1:CAS:528:DC%2BC3sXlvF2isb0%3D, PID: 23594743
    • Howe K, Clark MD, Torroja CF et al (2013) The zebrafish reference genome sequence and its relationship to the human genome. Nature 496:498–503
    • (2013) Nature , vol.496 , pp. 498-503
    • Howe, K.1    Clark, M.D.2    Torroja, C.F.3
  • 101
    • 0035734951 scopus 로고    scopus 로고
    • Evidence for genomic rearrangements mediated by human endogenous retroviruses during primate evolution
    • COI: 1:CAS:528:DC%2BD3MXovFGisrg%3D, PID: 11704760
    • Hughes JF, Coffin JM (2001) Evidence for genomic rearrangements mediated by human endogenous retroviruses during primate evolution. Nat Genet 29:487–489
    • (2001) Nat Genet , vol.29 , pp. 487-489
    • Hughes, J.F.1    Coffin, J.M.2
  • 102
    • 31144439046 scopus 로고    scopus 로고
    • Human endogenous retroviral elements as indicators of ectopic recombination events in the primate genome
    • COI: 1:CAS:528:DC%2BD28Xjs1KrsA%3D%3D, PID: 16157677
    • Hughes JF, Coffin JM (2005) Human endogenous retroviral elements as indicators of ectopic recombination events in the primate genome. Genetics 171:1183–1194
    • (2005) Genetics , vol.171 , pp. 1183-1194
    • Hughes, J.F.1    Coffin, J.M.2
  • 103
    • 25444521540 scopus 로고    scopus 로고
    • Reversion mutation of ib oculocutaneous albinism to wild-type pigmentation in medaka fish
    • COI: 1:CAS:528:DC%2BD2MXhtFeltrfO, PID: 16162178
    • Iida A, Takamatsu N, Hori H et al (2005) Reversion mutation of ib oculocutaneous albinism to wild-type pigmentation in medaka fish. Pigment Cell Res 18:382–384
    • (2005) Pigment Cell Res , vol.18 , pp. 382-384
    • Iida, A.1    Takamatsu, N.2    Hori, H.3
  • 104
    • 84887622325 scopus 로고    scopus 로고
    • Jumping the fine LINE between species: horizontal transfer of transposable elements in animals catalyses genome evolution
    • COI: 1:CAS:528:DC%2BC3sXhvVShsLjI, PID: 24003001
    • Ivancevic AM, Walsh AM, Kortschak RD, Adelson DL (2013) Jumping the fine LINE between species: horizontal transfer of transposable elements in animals catalyses genome evolution. BioEssays 35:1071–1082
    • (2013) BioEssays , vol.35 , pp. 1071-1082
    • Ivancevic, A.M.1    Walsh, A.M.2    Kortschak, R.D.3    Adelson, D.L.4
  • 105
    • 84878522936 scopus 로고    scopus 로고
    • The majority of primate-specific regulatory sequences are derived from transposable elements
    • COI: 1:CAS:528:DC%2BC3sXpsFylsLw%3D, PID: 23675311
    • Jacques PÉ, Jeyakani J, Bourque G (2013) The majority of primate-specific regulatory sequences are derived from transposable elements. PLoS Genet 9:e1003504
    • (2013) PLoS Genet , vol.9 , pp. e1003504
    • Jacques, P.É.1    Jeyakani, J.2    Bourque, G.3
  • 106
    • 84902682913 scopus 로고    scopus 로고
    • The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs
    • COI: 1:CAS:528:DC%2BC2cXhtFWgsrzO, PID: 24850885
    • Johnson R, Guigó R (2014) The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs. RNA 20:959–976
    • (2014) RNA , vol.20 , pp. 959-976
    • Johnson, R.1    Guigó, R.2
  • 107
    • 78649231644 scopus 로고    scopus 로고
    • Origins, evolution, and phenotypic impact of new genes
    • COI: 1:CAS:528:DC%2BC3cXht12jsrjL, PID: 20651121
    • Kaessmann H (2010) Origins, evolution, and phenotypic impact of new genes. Genome Res 20:1313–1326
    • (2010) Genome Res , vol.20 , pp. 1313-1326
    • Kaessmann, H.1
  • 108
    • 84875769579 scopus 로고    scopus 로고
    • The role of genes domesticated from LTR retrotransposons and retroviruses in mammals
    • Kaneko-Ishino T, Ishino F (2012) The role of genes domesticated from LTR retrotransposons and retroviruses in mammals. Front Microbiol 3:1–10
    • (2012) Front Microbiol , vol.3 , pp. 1-10
    • Kaneko-Ishino, T.1    Ishino, F.2
  • 109
    • 84971392079 scopus 로고    scopus 로고
    • Transposable element insertions in long intergenic non-coding RNA genes
    • Kannan S, Chernikova D, Rogozin IB et al (2015) Transposable element insertions in long intergenic non-coding RNA genes. Front Bioeng Biotechnol 3:1–9
    • (2015) Front Bioeng Biotechnol , vol.3 , pp. 1-9
    • Kannan, S.1    Chernikova, D.2    Rogozin, I.B.3
  • 110
    • 0035902449 scopus 로고    scopus 로고
    • Rolling-circle transposons in eukaryotes
    • COI: 1:CAS:528:DC%2BD3MXls1WitLo%3D, PID: 11447285
    • Kapitonov VV, Jurka J (2001) Rolling-circle transposons in eukaryotes. Proc Natl Acad Sci U S A 98:8714–8719
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 8714-8719
    • Kapitonov, V.V.1    Jurka, J.2
  • 111
    • 2542567200 scopus 로고    scopus 로고
    • Harbinger transposons and an ancient HARBI1 gene derived from a transposase
    • COI: 1:CAS:528:DC%2BD2cXkt1OgtL8%3D, PID: 15169610
    • Kapitonov VV, Jurka J (2004) Harbinger transposons and an ancient HARBI1 gene derived from a transposase. DNA Cell Biol 23:311–324
    • (2004) DNA Cell Biol , vol.23 , pp. 311-324
    • Kapitonov, V.V.1    Jurka, J.2
  • 112
    • 33645227457 scopus 로고    scopus 로고
    • Self-synthesizing DNA transposons in eukaryotes
    • COI: 1:CAS:528:DC%2BD28XjtlKisL0%3D, PID: 16537396
    • Kapitonov VV, Jurka J (2006) Self-synthesizing DNA transposons in eukaryotes. Proc Natl Acad Sci U S A 103:4540–4545
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 4540-4545
    • Kapitonov, V.V.1    Jurka, J.2
  • 113
    • 84928580279 scopus 로고    scopus 로고
    • Evolution of the RAG1-RAG2 locus: both proteins came from the same transposon
    • COI: 1:CAS:528:DC%2BC2MXpvFGkt7Y%3D
    • Kapitonov VV, Koonin EV (2015) Evolution of the RAG1-RAG2 locus: both proteins came from the same transposon. Biol Direct 10:1–8
    • (2015) Biol Direct , vol.10 , pp. 1-8
    • Kapitonov, V.V.1    Koonin, E.V.2
  • 114
    • 84921908289 scopus 로고    scopus 로고
    • Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications
    • COI: 1:CAS:528:DC%2BC2cXhsVOhtrzL, PID: 25218058
    • Kapusta A, Feschotte C (2014) Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications. Trends Genet 30:439–452
    • (2014) Trends Genet , vol.30 , pp. 439-452
    • Kapusta, A.1    Feschotte, C.2
  • 115
    • 84876864345 scopus 로고    scopus 로고
    • Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs
    • COI: 1:CAS:528:DC%2BC3sXnt1aqs7o%3D, PID: 23637635
    • Kapusta A, Kronenberg Z, Lynch VJ et al (2013) Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs. PLoS Genet 9:e1003470
    • (2013) PLoS Genet , vol.9 , pp. e1003470
    • Kapusta, A.1    Kronenberg, Z.2    Lynch, V.J.3
  • 116
    • 1542513556 scopus 로고    scopus 로고
    • Mobile elements: drivers of genome evolution
    • COI: 1:CAS:528:DC%2BD2cXhvFCntrk%3D, PID: 15016989
    • Kazazian HH Jr (2004) Mobile elements: drivers of genome evolution. Science 303:1626–1632
    • (2004) Science , vol.303 , pp. 1626-1632
    • Kazazian, H.H.1
  • 117
    • 84869881863 scopus 로고    scopus 로고
    • Transposable elements reveal a stem cell-specific class of long noncoding RNAs
    • PID: 23181609
    • Kelley D, Rinn J (2012) Transposable elements reveal a stem cell-specific class of long noncoding RNAs. Genome Biol 13:R107
    • (2012) Genome Biol , vol.13 , pp. R107
    • Kelley, D.1    Rinn, J.2
  • 118
    • 33745614284 scopus 로고    scopus 로고
    • Vertebrate DNA transposon as a natural mutator: the medaka fish Tol2 element contributes to genetic variation without recognizable traces
    • COI: 1:CAS:528:DC%2BD28XmsVOkurs%3D, PID: 16672286
    • Koga A, Iida A, Hori H, Shimada A, Shima A (2006) Vertebrate DNA transposon as a natural mutator: the medaka fish Tol2 element contributes to genetic variation without recognizable traces. Mol Biol Evol 23:1414–1419
    • (2006) Mol Biol Evol , vol.23 , pp. 1414-1419
    • Koga, A.1    Iida, A.2    Hori, H.3    Shimada, A.4    Shima, A.5
  • 119
    • 84876548744 scopus 로고    scopus 로고
    • Genesis and regulatory wiring of retroelement-derived domesticated genes: a phylogenomic perspective
    • PID: 23348003
    • Kokošar J, Kordiš D (2013) Genesis and regulatory wiring of retroelement-derived domesticated genes: a phylogenomic perspective. Mol Biol Evol 30:1015–1031
    • (2013) Mol Biol Evol , vol.30 , pp. 1015-1031
    • Kokošar, J.1    Kordiš, D.2
  • 120
    • 0345055836 scopus 로고    scopus 로고
    • The Bov-B lines found in Vipera ammodytes toxic PLA2 genes are widespread in snake genomes
    • PID: 9792174
    • Kordiš D, Gubensek F (1998) The Bov-B lines found in Vipera ammodytes toxic PLA2 genes are widespread in snake genomes. Toxicon 36:1585–1590
    • (1998) Toxicon , vol.36 , pp. 1585-1590
    • Kordiš, D.1    Gubensek, F.2
  • 121
    • 0344172788 scopus 로고    scopus 로고
    • Molecular evolution of Bov-B LINEs in vertebrates
    • PID: 10570995
    • Kordiš D, Gubensek F (1999) Molecular evolution of Bov-B LINEs in vertebrates. Gene 238:171–178
    • (1999) Gene , vol.238 , pp. 171-178
    • Kordiš, D.1    Gubensek, F.2
  • 122
    • 78649925356 scopus 로고    scopus 로고
    • Genome size and species diversification
    • PID: 22140283
    • Kraaijeveld K (2010) Genome size and species diversification. Evol Biol 37:227–233
    • (2010) Evol Biol , vol.37 , pp. 227-233
    • Kraaijeveld, K.1
  • 123
    • 25444517024 scopus 로고    scopus 로고
    • Alu-SINE exonization: en route to protein-coding function
    • COI: 1:CAS:528:DC%2BD2MXmslGjsro%3D, PID: 15901843
    • Krull M, Brosius J, Schmitz J (2005) Alu-SINE exonization: en route to protein-coding function. Mol Biol Evol 22:1702–1711
    • (2005) Mol Biol Evol , vol.22 , pp. 1702-1711
    • Krull, M.1    Brosius, J.2    Schmitz, J.3
  • 124
    • 34547643930 scopus 로고    scopus 로고
    • Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs)
    • COI: 1:CAS:528:DC%2BD2sXptVyhsL4%3D, PID: 17623809
    • Krull M, Petrusma M, Makalowski W, Brosius J, Schmitz J (2007) Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs). Genome Res 17:1139–1145
    • (2007) Genome Res , vol.17 , pp. 1139-1145
    • Krull, M.1    Petrusma, M.2    Makalowski, W.3    Brosius, J.4    Schmitz, J.5
  • 125
    • 77954100084 scopus 로고    scopus 로고
    • Transposable elements have rewired the core regulatory network of human embryonic stem cells
    • COI: 1:CAS:528:DC%2BC3cXntVSrsb4%3D, PID: 20526341
    • Kunarso G, Chia NY, Jeyakani J et al (2010) Transposable elements have rewired the core regulatory network of human embryonic stem cells. Nat Genet 42:631–634
    • (2010) Nat Genet , vol.42 , pp. 631-634
    • Kunarso, G.1    Chia, N.Y.2    Jeyakani, J.3
  • 126
    • 84864629645 scopus 로고    scopus 로고
    • Rapid turnover of long noncoding RNAs and the evolution of gene expression
    • COI: 1:CAS:528:DC%2BC38XhtFeisrnO, PID: 22844254
    • Kutter C, Watt S, Stefflova K et al (2012) Rapid turnover of long noncoding RNAs and the evolution of gene expression. PLoS Genet 8:e1002841
    • (2012) PLoS Genet , vol.8 , pp. e1002841
    • Kutter, C.1    Watt, S.2    Stefflova, K.3
  • 127
    • 0037791694 scopus 로고    scopus 로고
    • Functional analysis of the endogenous retroviral promoter of the human endothelin B receptor gene
    • COI: 1:CAS:528:DC%2BD3sXkvV2qu78%3D, PID: 12805445
    • Landry JR, Mager DL (2003) Functional analysis of the endogenous retroviral promoter of the human endothelin B receptor gene. J Virol 77:7459–7466
    • (2003) J Virol , vol.77 , pp. 7459-7466
    • Landry, J.R.1    Mager, D.L.2
  • 128
    • 0036854278 scopus 로고    scopus 로고
    • The Opitz syndrome gene mid1 is transcribed from a human endogenous retroviral promoter
    • COI: 1:CAS:528:DC%2BD38XovFOntbo%3D, PID: 12411602
    • Landry JR, Rouhi A, Medstrand P, Mager DL (2002) The Opitz syndrome gene mid1 is transcribed from a human endogenous retroviral promoter. Mol Biol Evol 19:1934–1942
    • (2002) Mol Biol Evol , vol.19 , pp. 1934-1942
    • Landry, J.R.1    Rouhi, A.2    Medstrand, P.3    Mager, D.L.4
  • 129
    • 33750461976 scopus 로고    scopus 로고
    • Population genetics models of competition between transposable element subfamilies
    • PID: 16888345
    • Le Rouzic A, Capy P (2006) Population genetics models of competition between transposable element subfamilies. Genetics 174:785–793
    • (2006) Genetics , vol.174 , pp. 785-793
    • Le Rouzic, A.1    Capy, P.2
  • 130
    • 0027751663 scopus 로고
    • The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • COI: 1:CAS:528:DyaK2cXpslGqtA%3D%3D, PID: 8252621
    • Lee RC (1993) The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75:843–854
    • (1993) Cell , vol.75 , pp. 843-854
    • Lee, R.C.1
  • 131
    • 29144525954 scopus 로고    scopus 로고
    • The SET domain protein Metnase mediates foreign DNA integration and links integration to nonhomologous end-joining repair
    • COI: 1:CAS:528:DC%2BD2MXhtlersr3J, PID: 16332963
    • Lee SH, Oshige M, Durant ST et al (2005) The SET domain protein Metnase mediates foreign DNA integration and links integration to nonhomologous end-joining repair. Proc Natl Acad Sci U S A 102:18075–18080
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 18075-18080
    • Lee, S.H.1    Oshige, M.2    Durant, S.T.3
  • 132
    • 55249096744 scopus 로고    scopus 로고
    • Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3′-end of genes
    • COI: 1:CAS:528:DC%2BD1MXisFOmuw%3D%3D, PID: 18757892
    • Lee JY, Ji Z, Tian B (2008) Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3′-end of genes. Nucl Acids Res 36:5581–5590
    • (2008) Nucl Acids Res , vol.36 , pp. 5581-5590
    • Lee, J.Y.1    Ji, Z.2    Tian, B.3
  • 133
    • 0038701605 scopus 로고    scopus 로고
    • The birth of an alternatively spliced exon: 3ʹ splice-site selection in Alu exons
    • COI: 1:CAS:528:DC%2BD3sXktFGkt7w%3D, PID: 12764196
    • Lev-Maor G, Sorek R, Shomron N, Ast G (2003) The birth of an alternatively spliced exon: 3ʹ splice-site selection in Alu exons. Science 300:1288–1291
    • (2003) Science , vol.300 , pp. 1288-1291
    • Lev-Maor, G.1    Sorek, R.2    Shomron, N.3    Ast, G.4
  • 134
    • 0033537716 scopus 로고    scopus 로고
    • Regulation of maternal behavior and offspring growth by paternally expressed Peg3
    • COI: 1:CAS:528:DyaK1MXitlOgt7Y%3D, PID: 10195900
    • Li L, Keverne EB, Aparicio SA, Ishino F, Barton SC, Surani MA (1999) Regulation of maternal behavior and offspring growth by paternally expressed Peg3. Science 284:330–333
    • (1999) Science , vol.284 , pp. 330-333
    • Li, L.1    Keverne, E.B.2    Aparicio, S.A.3    Ishino, F.4    Barton, S.C.5    Surani, M.A.6
  • 135
    • 66149120239 scopus 로고    scopus 로고
    • Large-scale analysis of exonized mammalian-wide interspersed repeats in primate genomes
    • COI: 1:CAS:528:DC%2BD1MXmtlWntLs%3D, PID: 19324900
    • Lin L, Jiang P, Shen S, Sato S, Davidson BL, Xing Y (2009) Large-scale analysis of exonized mammalian-wide interspersed repeats in primate genomes. Hum Mol Genet 18:2204–2214
    • (2009) Hum Mol Genet , vol.18 , pp. 2204-2214
    • Lin, L.1    Jiang, P.2    Shen, S.3    Sato, S.4    Davidson, B.L.5    Xing, Y.6
  • 136
    • 33846627783 scopus 로고    scopus 로고
    • The human SETMAR protein preserves most of the activities of the ancestral Hsmar1 transposase
    • PID: 17130240
    • Liu D, Bischerour J, Siddique A, Buisine N, Bigot Y, Chalmers R (2007) The human SETMAR protein preserves most of the activities of the ancestral Hsmar1 transposase. Mol Cell Biol 27:1125–1132
    • (2007) Mol Cell Biol , vol.27 , pp. 1125-1132
    • Liu, D.1    Bischerour, J.2    Siddique, A.3    Buisine, N.4    Bigot, Y.5    Chalmers, R.6
  • 137
    • 78649467088 scopus 로고    scopus 로고
    • Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells
    • COI: 1:CAS:528:DC%2BC3cXhtl2jsbzE, PID: 21057500
    • Loewer S, Cabili MN, Guttman M et al (2010) Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells. Nat Genet 42:1113–1117
    • (2010) Nat Genet , vol.42 , pp. 1113-1117
    • Loewer, S.1    Cabili, M.N.2    Guttman, M.3
  • 138
    • 84924388328 scopus 로고    scopus 로고
    • Analysis of 13 cell types reveals evidence for the expression of numerous novel primate- and tissue-specific microRNAs
    • COI: 1:CAS:528:DC%2BC2MXjtFemtbo%3D, PID: 25713380
    • Londin E, Loher P, Telonis AG et al (2015) Analysis of 13 cell types reveals evidence for the expression of numerous novel primate- and tissue-specific microRNAs. Proc Natl Acad Sci U S A 112:E1106–E1115
    • (2015) Proc Natl Acad Sci U S A , vol.112 , pp. E1106-E1115
    • Londin, E.1    Loher, P.2    Telonis, A.G.3
  • 139
    • 80155146885 scopus 로고    scopus 로고
    • Human piRNAs are under selection in Africans and repress transposable elements
    • COI: 1:CAS:528:DC%2BC3MXhtlyqsbvJ, PID: 21613236
    • Lukic S, Chen K (2011) Human piRNAs are under selection in Africans and repress transposable elements. Mol Biol Evol 28:3061–3067
    • (2011) Mol Biol Evol , vol.28 , pp. 3061-3067
    • Lukic, S.1    Chen, K.2
  • 140
    • 80055010534 scopus 로고    scopus 로고
    • Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals
    • COI: 1:CAS:528:DC%2BC3MXht1anurbO, PID: 21946353
    • Lynch VJ, Leclerc RD, May G, Wagner GP (2011) Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals. Nat Genet 43:1154–1159
    • (2011) Nat Genet , vol.43 , pp. 1154-1159
    • Lynch, V.J.1    Leclerc, R.D.2    May, G.3    Wagner, G.P.4
  • 141
    • 84922820231 scopus 로고    scopus 로고
    • Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy
    • COI: 1:CAS:528:DC%2BC2MXhvVOqt7s%3D, PID: 25640180
    • Lynch VJ, Nnamani MC, Kapusta A et al (2015) Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy. Cell Rep 10:551–561
    • (2015) Cell Rep , vol.10 , pp. 551-561
    • Lynch, V.J.1    Nnamani, M.C.2    Kapusta, A.3
  • 143
    • 27844557002 scopus 로고    scopus 로고
    • Emergence of young human genes after a burst of retroposition in primates
    • COI: 1:CAS:528:DC%2BD2MXht1als77E
    • Marques AC, Dupanloup I, Vinckenbosch N, Reymond A, Kaessmann H (2005) Emergence of young human genes after a burst of retroposition in primates. PLoS Biol 3:1970–1979
    • (2005) PLoS Biol , vol.3 , pp. 1970-1979
    • Marques, A.C.1    Dupanloup, I.2    Vinckenbosch, N.3    Reymond, A.4    Kaessmann, H.5
  • 144
    • 45549083763 scopus 로고    scopus 로고
    • Functional diversification of duplicate genes through subcellular adaptation of encoded proteins
    • PID: 18336717
    • Marques AC, Vinckenbosch N, Brawand D, Kaessmann H (2008) Functional diversification of duplicate genes through subcellular adaptation of encoded proteins. Genome Biol 9:R54
    • (2008) Genome Biol , vol.9 , pp. R54
    • Marques, A.C.1    Vinckenbosch, N.2    Brawand, D.3    Kaessmann, H.4
  • 145
    • 77952303782 scopus 로고    scopus 로고
    • Location analysis for the estrogen receptor-α reveals binding to diverse ERE sequences and widespread binding within repetitive DNA elements
    • COI: 1:CAS:528:DC%2BC3cXkvVOrs74%3D, PID: 20047966
    • Mason CE, Shu FJ, Wang C et al (2010) Location analysis for the estrogen receptor-α reveals binding to diverse ERE sequences and widespread binding within repetitive DNA elements. Nucl Acids Res 38:2355–2368
    • (2010) Nucl Acids Res , vol.38 , pp. 2355-2368
    • Mason, C.E.1    Shu, F.J.2    Wang, C.3
  • 146
    • 33748750454 scopus 로고    scopus 로고
    • Mouse homologue of skin-specific retroviral-like aspartic protease involved in wrinkle formation
    • COI: 1:CAS:528:DC%2BD28XptlKmtLc%3D, PID: 16837463
    • Matsui T, Kinoshita-Ida Y, Hayashi-Kisumi F et al (2006) Mouse homologue of skin-specific retroviral-like aspartic protease involved in wrinkle formation. J Biol Chem 281:27512–27525
    • (2006) J Biol Chem , vol.281 , pp. 27512-27525
    • Matsui, T.1    Kinoshita-Ida, Y.2    Hayashi-Kisumi, F.3
  • 147
    • 79957895462 scopus 로고    scopus 로고
    • SASPase regulates stratum corneum hydration through profilaggrin-to-filaggrin processing
    • COI: 1:CAS:528:DC%2BC3MXnsFKrs7o%3D, PID: 21542132
    • Matsui T, Miyamoto K, Kubo A et al (2011) SASPase regulates stratum corneum hydration through profilaggrin-to-filaggrin processing. EMBO Mol Med 3:320–333
    • (2011) EMBO Mol Med , vol.3 , pp. 320-333
    • Matsui, T.1    Miyamoto, K.2    Kubo, A.3
  • 148
    • 77049292314 scopus 로고
    • Controlling elements and the gene
    • COI: 1:STN:280:DyaG2s%2FotVansg%3D%3D, PID: 13433592
    • McClintock B (1956) Controlling elements and the gene. Cold Spring Harb Symp Quant Biol 21:197–216
    • (1956) Cold Spring Harb Symp Quant Biol , vol.21 , pp. 197-216
    • McClintock, B.1
  • 149
    • 37249013294 scopus 로고    scopus 로고
    • Genomic instability within centromeres of interspecific marsupial hybrids
    • COI: 1:CAS:528:DC%2BD1cXhtlCjtrc%3D, PID: 18073443
    • Metcalfe CJ, Bulazel KV, Ferreri GC et al (2007) Genomic instability within centromeres of interspecific marsupial hybrids. Genetics 177:2507–2517
    • (2007) Genetics , vol.177 , pp. 2507-2517
    • Metcalfe, C.J.1    Bulazel, K.V.2    Ferreri, G.C.3
  • 150
    • 84867761085 scopus 로고    scopus 로고
    • Evolution of the Australian lungfish (Neoceratodus forsteri) genome: a major role for CR1 and L2 LINE elements
    • COI: 1:CAS:528:DC%2BC38XhsFCru7jN, PID: 22734051
    • Metcalfe CJ, Filee J, Germon I, Joss J, Casane D (2012) Evolution of the Australian lungfish (Neoceratodus forsteri) genome: a major role for CR1 and L2 LINE elements. Mol Biol Evol 29:3529–3539
    • (2012) Mol Biol Evol , vol.29 , pp. 3529-3539
    • Metcalfe, C.J.1    Filee, J.2    Germon, I.3    Joss, J.4    Casane, D.5
  • 151
    • 84871974893 scopus 로고    scopus 로고
    • Birth and expression evolution of mammalian microRNA genes
    • COI: 1:CAS:528:DC%2BC3sXnvV2ltQ%3D%3D, PID: 23034410
    • Meunier J, Lemoine F, Soumillon M et al (2013) Birth and expression evolution of mammalian microRNA genes. Genome Res 23:34–45
    • (2013) Genome Res , vol.23 , pp. 34-45
    • Meunier, J.1    Lemoine, F.2    Soumillon, M.3
  • 152
    • 0342545919 scopus 로고    scopus 로고
    • Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis
    • COI: 1:CAS:528:DC%2BD3cXhsVWitLg%3D, PID: 10693809
    • Mi S, Lee X, Li X et al (2000) Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis. Nature 403:785–789
    • (2000) Nature , vol.403 , pp. 785-789
    • Mi, S.1    Lee, X.2    Li, X.3
  • 153
    • 84868266826 scopus 로고    scopus 로고
    • A fish-specific transposable element shapes the repertoire of p53 target genes in zebrafish
    • COI: 1:CAS:528:DC%2BC38XhslWjs7nN, PID: 23118857
    • Micale L, Loviglio MN, Manzoni M et al (2012) A fish-specific transposable element shapes the repertoire of p53 target genes in zebrafish. PLoS One 7:e46642
    • (2012) PLoS One , vol.7 , pp. e46642
    • Micale, L.1    Loviglio, M.N.2    Manzoni, M.3
  • 154
    • 0027478362 scopus 로고
    • The emergence of new DNA repeats and the divergence of primates
    • COI: 1:CAS:528:DyaK3sXhs1agsrs%3D, PID: 8446601
    • Minghetti PP, Dugaiczyk A (1993) The emergence of new DNA repeats and the divergence of primates. Proc Natl Acad Sci U S A 90:1872–1876
    • (1993) Proc Natl Acad Sci U S A , vol.90 , pp. 1872-1876
    • Minghetti, P.P.1    Dugaiczyk, A.2
  • 155
    • 33749389932 scopus 로고    scopus 로고
    • Comparative genomics modeling of the NRSF/REST repressor network: from single conserved sites to genome-wide repertoire
    • COI: 1:CAS:528:DC%2BD28XhtVOmtrnL, PID: 16963704
    • Mortazavi A, Leeper Thompson EC, Garcia ST, Myers RM, Wold B (2006) Comparative genomics modeling of the NRSF/REST repressor network: from single conserved sites to genome-wide repertoire. Genome Res 16:1208–1221
    • (2006) Genome Res , vol.16 , pp. 1208-1221
    • Mortazavi, A.1    Leeper Thompson, E.C.2    Garcia, S.T.3    Myers, R.M.4    Wold, B.5
  • 156
    • 84865286053 scopus 로고    scopus 로고
    • A SINE-derived element constitutes a unique modular enhancer for mammalian diencephalic Fgf8
    • COI: 1:CAS:528:DC%2BC38Xht1Oit7rO, PID: 22937095
    • Nakanishi A, Kobayashi N, Suzuki-Hirano A et al (2012) A SINE-derived element constitutes a unique modular enhancer for mammalian diencephalic Fgf8. PLoS One 7:e43785
    • (2012) PLoS One , vol.7 , pp. e43785
    • Nakanishi, A.1    Kobayashi, N.2    Suzuki-Hirano, A.3
  • 157
    • 84895908120 scopus 로고    scopus 로고
    • The evolution of lncRNA repertoires and expression patterns in tetrapods
    • COI: 1:CAS:528:DC%2BC2cXhsFemtLg%3D, PID: 24463510
    • Necsulea A, Soumillon M, Warnefors M et al (2014) The evolution of lncRNA repertoires and expression patterns in tetrapods. Nature 505:635–640
    • (2014) Nature , vol.505 , pp. 635-640
    • Necsulea, A.1    Soumillon, M.2    Warnefors, M.3
  • 158
    • 84925778794 scopus 로고    scopus 로고
    • A family of transposable elements co-opted into developmental enhancers in the mouse neocortex
    • COI: 1:CAS:528:DC%2BC2MXhtF2itLzK, PID: 25806706
    • Notwell JH, Chung T, Heavner W, Bejerano G (2015) A family of transposable elements co-opted into developmental enhancers in the mouse neocortex. Nat Commun 6:6644
    • (2015) Nat Commun , vol.6 , pp. 6644
    • Notwell, J.H.1    Chung, T.2    Heavner, W.3    Bejerano, G.4
  • 159
    • 77958130019 scopus 로고    scopus 로고
    • Rapid sequence and expression divergence suggest selection for novel function in primate-specific KRAB-ZNF genes
    • COI: 1:CAS:528:DC%2BC3cXhtlShu7rF, PID: 20573777
    • Nowick K, Hamilton AT, Zhang H, Stubbs L (2010) Rapid sequence and expression divergence suggest selection for novel function in primate-specific KRAB-ZNF genes. Mol Biol Evol 27:2606–2617
    • (2010) Mol Biol Evol , vol.27 , pp. 2606-2617
    • Nowick, K.1    Hamilton, A.T.2    Zhang, H.3    Stubbs, L.4
  • 160
    • 0009673698 scopus 로고    scopus 로고
    • Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid
    • PID: 9590690
    • O’Neill RJ, O’Neill MJ, Graves JA (1998) Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid. Nature 393:68–72
    • (1998) Nature , vol.393 , pp. 68-72
    • O’Neill, R.J.1    O’Neill, M.J.2    Graves, J.A.3
  • 161
    • 29444434486 scopus 로고    scopus 로고
    • Deletion of Peg10, an imprinted gene acquired from a retrotransposon, causes early embryonic lethality
    • COI: 1:CAS:528:DC%2BD2MXhtlCmtr%2FJ, PID: 16341224
    • Ono R, Nakamura K, Inoue K et al (2006) Deletion of Peg10, an imprinted gene acquired from a retrotransposon, causes early embryonic lethality. Nat Genet 38:101–106
    • (2006) Nat Genet , vol.38 , pp. 101-106
    • Ono, R.1    Nakamura, K.2    Inoue, K.3
  • 162
    • 63449122253 scopus 로고    scopus 로고
    • Burst of young retrogenes and independent retrogene formation in mammals
    • PID: 19325906
    • Pan D, Zhang L (2009) Burst of young retrogenes and independent retrogene formation in mammals. PLoS One 4:e5040
    • (2009) PLoS One , vol.4 , pp. e5040
    • Pan, D.1    Zhang, L.2
  • 163
    • 68049137925 scopus 로고    scopus 로고
    • Cloning, characterization, and expression analysis of the novel acetyltransferase retrogene Ard1b in the mouse
    • COI: 1:CAS:528:DC%2BD1MXptVaitb0%3D, PID: 19246321
    • Pang ALY, Peacock S, Johnson W, Bear DH, Rennert OM, Chan WY (2009) Cloning, characterization, and expression analysis of the novel acetyltransferase retrogene Ard1b in the mouse. Biol Reprod 81:302–309
    • (2009) Biol Reprod , vol.81 , pp. 302-309
    • Pang, A.L.Y.1    Peacock, S.2    Johnson, W.3    Bear, D.H.4    Rennert, O.M.5    Chan, W.Y.6
  • 164
    • 34748895999 scopus 로고    scopus 로고
    • Diet and the evolution of human amylase gene copy number variation
    • COI: 1:CAS:528:DC%2BD2sXhtV2isL7J, PID: 17828263
    • Perry GH, Dominy NJ, Claw KG et al (2007) Diet and the evolution of human amylase gene copy number variation. Nat Genet 39:1256–1260
    • (2007) Nat Genet , vol.39 , pp. 1256-1260
    • Perry, G.H.1    Dominy, N.J.2    Claw, K.G.3
  • 165
    • 9144249570 scopus 로고    scopus 로고
    • The LTR enhancer of ERV-9 human endogenous retrovirus is active in oocytes and progenitor cells in transgenic zebrafish and humans
    • COI: 1:CAS:528:DC%2BD2cXhsVWhu70%3D, PID: 14718667
    • Pi W, Yang Z, Wang J et al (2004) The LTR enhancer of ERV-9 human endogenous retrovirus is active in oocytes and progenitor cells in transgenic zebrafish and humans. Proc Natl Acad Sci U S A 101:805–810
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 805-810
    • Pi, W.1    Yang, Z.2    Wang, J.3
  • 166
    • 34250776711 scopus 로고    scopus 로고
    • A family of human microRNA genes from miniature inverted-repeat transposable elements
    • PID: 17301878
    • Piriyapongsa J, Jordan IK (2007) A family of human microRNA genes from miniature inverted-repeat transposable elements. PLoS One 2:e203
    • (2007) PLoS One , vol.2 , pp. e203
    • Piriyapongsa, J.1    Jordan, I.K.2
  • 167
    • 34250729886 scopus 로고    scopus 로고
    • Origin and evolution of human microRNAs from transposable elements
    • COI: 1:CAS:528:DC%2BD2sXovVOqs7k%3D, PID: 17435244
    • Piriyapongsa J, Mariño-Ramírez L, Jordan IK (2007a) Origin and evolution of human microRNAs from transposable elements. Genetics 176:1323–1337
    • (2007) Genetics , vol.176 , pp. 1323-1337
    • Piriyapongsa, J.1    Mariño-Ramírez, L.2    Jordan, I.K.3
  • 169
    • 80053190889 scopus 로고    scopus 로고
    • Tracking the ancestry of a deeply conserved eumetazoan SINE domain
    • COI: 1:CAS:528:DC%2BC3MXht1eiu7vP, PID: 21512106
    • Piskurek O, Jackson DJ (2011) Tracking the ancestry of a deeply conserved eumetazoan SINE domain. Mol Biol Evol 28:2727–2730
    • (2011) Mol Biol Evol , vol.28 , pp. 2727-2730
    • Piskurek, O.1    Jackson, D.J.2
  • 170
    • 33750496896 scopus 로고    scopus 로고
    • Arc/Arg3.1 is essential for the consolidation of synaptic plasticity and memories
    • COI: 1:CAS:528:DC%2BD28Xht1KhtbjE, PID: 17088210
    • Plath N, Ohana O, Dammermann B et al (2006) Arc/Arg3.1 is essential for the consolidation of synaptic plasticity and memories. Neuron 52:437–444
    • (2006) Neuron , vol.52 , pp. 437-444
    • Plath, N.1    Ohana, O.2    Dammermann, B.3
  • 171
    • 43249118306 scopus 로고    scopus 로고
    • Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes
    • COI: 1:CAS:528:DC%2BD1cXlvFCitL0%3D
    • Potrzebowski L, Vinckenbosch N, Marques AC, Chalmel F, Jégou B, Kaessmann H (2008) Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes. PLoS Biol 6:709–716
    • (2008) PLoS Biol , vol.6 , pp. 709-716
    • Potrzebowski, L.1    Vinckenbosch, N.2    Marques, A.C.3    Chalmel, F.4    Jégou, B.5    Kaessmann, H.6
  • 172
    • 72449140662 scopus 로고    scopus 로고
    • The emergence of new genes on the young therian X
    • COI: 1:CAS:528:DC%2BD1MXhs1WksrfK, PID: 19931933
    • Potrzebowski L, Vinckenbosch N, Kaessmann H (2010) The emergence of new genes on the young therian X. Trends Genet 26:1–4
    • (2010) Trends Genet , vol.26 , pp. 1-4
    • Potrzebowski, L.1    Vinckenbosch, N.2    Kaessmann, H.3
  • 173
    • 84938633193 scopus 로고    scopus 로고
    • The role of transposable elements in the origin and evolution of microRNAs in human
    • PID: 26115450
    • Qin S, Jin P, Zhou X, Chen L, Ma F (2015) The role of transposable elements in the origin and evolution of microRNAs in human. Plos One 10:e0131365
    • (2015) Plos One , vol.10 , pp. e0131365
    • Qin, S.1    Jin, P.2    Zhou, X.3    Chen, L.4    Ma, F.5
  • 174
    • 43149103661 scopus 로고    scopus 로고
    • Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus
    • COI: 1:CAS:528:DC%2BD1cXlslChs7g%3D, PID: 18340040
    • Ray DA, Feschotte C, Pagan HJT et al (2008) Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus. Genome Res 18:717–728
    • (2008) Genome Res , vol.18 , pp. 717-728
    • Ray, D.A.1    Feschotte, C.2    Pagan, H.J.T.3
  • 175
    • 84867050577 scopus 로고    scopus 로고
    • Transposable elements: an abundant and natural source of regulatory sequences for host genes
    • COI: 1:CAS:528:DC%2BC38XhvVyktbnN, PID: 22905872
    • Rebollo R, Romanish MT, Mager DL (2012) Transposable elements: an abundant and natural source of regulatory sequences for host genes. Annu Rev Genet 46:21–42
    • (2012) Annu Rev Genet , vol.46 , pp. 21-42
    • Rebollo, R.1    Romanish, M.T.2    Mager, D.L.3
  • 176
    • 79952261267 scopus 로고    scopus 로고
    • Dioxin receptor and SLUG transcription factors regulate the insulator activity of B1 SINE retrotransposons via an RNA polymerase switch
    • PID: 21324874
    • Román AC, González-Rico FJ, Moltó E et al (2011) Dioxin receptor and SLUG transcription factors regulate the insulator activity of B1 SINE retrotransposons via an RNA polymerase switch. Genome Res 21:422–432
    • (2011) Genome Res , vol.21 , pp. 422-432
    • Román, A.C.1    González-Rico, F.J.2    Moltó, E.3
  • 178
    • 0025282303 scopus 로고
    • Retroviral and pseudogene insertion sites reveal the lineage of human salivary and pancreatic amylase genes from a single gene during primate evolution
    • COI: 1:CAS:528:DyaK3cXkvFantrs%3D, PID: 1692956
    • Samuelson LC, Wiebauer K, Snow CM, Meisler MH (1990) Retroviral and pseudogene insertion sites reveal the lineage of human salivary and pancreatic amylase genes from a single gene during primate evolution. Mol Cell Biol 10:2513–2520
    • (1990) Mol Cell Biol , vol.10 , pp. 2513-2520
    • Samuelson, L.C.1    Wiebauer, K.2    Snow, C.M.3    Meisler, M.H.4
  • 179
    • 35948981635 scopus 로고    scopus 로고
    • Ancient exaptation of a CORE-SINE retroposon into a highly conserved mammalian neuronal enhancer of the proopiomelanocortin gene
    • COI: 1:CAS:528:DC%2BD2sXhsVOgu7fF, PID: 17922573
    • Santangelo AM, de Souza FSJ, Franchini LF, Bumaschny VF, Low MJ, Rubinstein M (2007) Ancient exaptation of a CORE-SINE retroposon into a highly conserved mammalian neuronal enhancer of the proopiomelanocortin gene. PLoS Genet 3:1813–1826
    • (2007) PLoS Genet , vol.3 , pp. 1813-1826
    • Santangelo, A.M.1    de Souza, F.S.J.2    Franchini, L.F.3    Bumaschny, V.F.4    Low, M.J.5    Rubinstein, M.6
  • 180
    • 84871215627 scopus 로고    scopus 로고
    • HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency
    • COI: 1:CAS:528:DC%2BC3sXivVOrtL8%3D, PID: 23253934
    • Santoni FA, Guerra J, Luban J (2012) HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency. Retrovirology 9:111
    • (2012) Retrovirology , vol.9 , pp. 111
    • Santoni, F.A.1    Guerra, J.2    Luban, J.3
  • 181
    • 84911454495 scopus 로고    scopus 로고
    • The evolution of cichlid fish egg-spots is linked with a cis-regulatory change
    • COI: 1:CAS:528:DC%2BC2cXitVaksLfP, PID: 25296686
    • Santos ME, Braasch I, Boileau N et al (2014) The evolution of cichlid fish egg-spots is linked with a cis-regulatory change. Nat Commun 5:5149
    • (2014) Nat Commun , vol.5 , pp. 5149
    • Santos, M.E.1    Braasch, I.2    Boileau, N.3
  • 182
    • 41949093041 scopus 로고    scopus 로고
    • Possible involvement of SINEs in mammalian-specific brain formation
    • COI: 1:CAS:528:DC%2BD1cXkt1ehsr4%3D, PID: 18334644
    • Sasaki T, Nishihara H, Hirakawa M et al (2008) Possible involvement of SINEs in mammalian-specific brain formation. Proc Natl Acad Sci U S A 105:4220–4225
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 4220-4225
    • Sasaki, T.1    Nishihara, H.2    Hirakawa, M.3
  • 183
    • 33847665108 scopus 로고    scopus 로고
    • Human polymorphism at microRNAs and microRNA target sites
    • COI: 1:CAS:528:DC%2BD2sXjtVWltrs%3D, PID: 17360642
    • Saunders MA, Liang H, Li WH (2007) Human polymorphism at microRNAs and microRNA target sites. Proc Natl Acad Sci U S A 104:3300–3305
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 3300-3305
    • Saunders, M.A.1    Liang, H.2    Li, W.H.3
  • 184
    • 77955658052 scopus 로고    scopus 로고
    • Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution
    • PID: 20591532
    • Schaack S, Gilbert C, Feschotte C (2010) Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution. Trends Ecol Evol 25:537–546
    • (2010) Trends Ecol Evol , vol.25 , pp. 537-546
    • Schaack, S.1    Gilbert, C.2    Feschotte, C.3
  • 185
    • 0032710999 scopus 로고    scopus 로고
    • Melanoma loss-of-function mutants in Xiphophorus caused by Xmrk-oncogene deletion and gene disruption by a transposable element
    • COI: 1:CAS:528:DyaK1MXnslSjsbY%3D, PID: 10545466
    • Schartl M, Hornung U, Gutbrod H, Volff JN, Wittbrodt J (1999) Melanoma loss-of-function mutants in Xiphophorus caused by Xmrk-oncogene deletion and gene disruption by a transposable element. Genetics 153:1385–1394
    • (1999) Genetics , vol.153 , pp. 1385-1394
    • Schartl, M.1    Hornung, U.2    Gutbrod, H.3    Volff, J.N.4    Wittbrodt, J.5
  • 186
    • 80355122714 scopus 로고    scopus 로고
    • V(D)J recombination: mechanisms of initiation
    • COI: 1:CAS:528:DC%2BC3MXhs1ahtr3I, PID: 21854230
    • Schatz DG, Swanson PC (2011) V(D)J recombination: mechanisms of initiation. Annu Rev Genet 45:167–202
    • (2011) Annu Rev Genet , vol.45 , pp. 167-202
    • Schatz, D.G.1    Swanson, P.C.2
  • 187
    • 84863393570 scopus 로고    scopus 로고
    • Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages
    • COI: 1:CAS:528:DC%2BC38XhtFKgtr4%3D, PID: 22244452
    • Schmidt D, Schwalie PC, Wilson MD et al (2012) Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages. Cell 148:335–348
    • (2012) Cell , vol.148 , pp. 335-348
    • Schmidt, D.1    Schwalie, P.C.2    Wilson, M.D.3
  • 188
    • 80053564717 scopus 로고    scopus 로고
    • Exonization of transposed elements: a challenge and opportunity for evolution
    • COI: 1:CAS:528:DC%2BC3MXht1Gqs7zN, PID: 21787833
    • Schmitz J, Brosius J (2011) Exonization of transposed elements: a challenge and opportunity for evolution. Biochimie 93:1928–1934
    • (2011) Biochimie , vol.93 , pp. 1928-1934
    • Schmitz, J.1    Brosius, J.2
  • 189
    • 27344449164 scopus 로고    scopus 로고
    • The human PNMA family: novel neuronal proteins implicated in paraneoplastic neurological disease
    • PID: 16214224
    • Schüller M, Jenne D, Voltz R (2005) The human PNMA family: novel neuronal proteins implicated in paraneoplastic neurological disease. J Neuroimmunol 169:172–176
    • (2005) J Neuroimmunol , vol.169 , pp. 172-176
    • Schüller, M.1    Jenne, D.2    Voltz, R.3
  • 190
    • 0031746566 scopus 로고    scopus 로고
    • Structure and phylogenetic analysis of an endogenous retrovirus inserted into the human growth factor gene pleiotrophin
    • COI: 1:CAS:528:DyaK1cXjvFGltLs%3D, PID: 9621070
    • Schulte AM, Wellstein A (1998) Structure and phylogenetic analysis of an endogenous retrovirus inserted into the human growth factor gene pleiotrophin. J Virol 72:6065–6072
    • (1998) J Virol , vol.72 , pp. 6065-6072
    • Schulte, A.M.1    Wellstein, A.2
  • 191
    • 38649091005 scopus 로고    scopus 로고
    • Role of retrotransposon-derived imprinted gene, Rtl1, in the feto-maternal interface of mouse placenta
    • COI: 1:CAS:528:DC%2BD1cXhsVSjsbo%3D, PID: 18176565
    • Sekita Y, Wagatsuma H, Nakamura K et al (2008) Role of retrotransposon-derived imprinted gene, Rtl1, in the feto-maternal interface of mouse placenta. Nat Genet 40:243–248
    • (2008) Nat Genet , vol.40 , pp. 243-248
    • Sekita, Y.1    Wagatsuma, H.2    Nakamura, K.3
  • 192
    • 34748869000 scopus 로고    scopus 로고
    • Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu’s unique role in shaping the human transcriptome
    • PID: 17594509
    • Sela N, Mersch B, Gal-Mark N, Lev-Maor G, Hotz-Wagenblatt A, Ast G (2007) Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu’s unique role in shaping the human transcriptome. Genome Biol 8:R127
    • (2007) Genome Biol , vol.8 , pp. R127
    • Sela, N.1    Mersch, B.2    Gal-Mark, N.3    Lev-Maor, G.4    Hotz-Wagenblatt, A.5    Ast, G.6
  • 193
    • 77956222970 scopus 로고    scopus 로고
    • Characteristics of transposable element exonization within human and mouse
    • PID: 20532223
    • Sela N, Mersch B, Hotz-Wagenblatt A, Ast G (2010) Characteristics of transposable element exonization within human and mouse. PLoS One 5:e10907
    • (2010) PLoS One , vol.5 , pp. e10907
    • Sela, N.1    Mersch, B.2    Hotz-Wagenblatt, A.3    Ast, G.4
  • 194
    • 79952615527 scopus 로고    scopus 로고
    • Widespread establishment and regulatory impact of Alu exons in human genes
    • COI: 1:CAS:528:DC%2BC3MXitl2ht7k%3D, PID: 21282640
    • Shen S, Lin L, Cai JJ et al (2011) Widespread establishment and regulatory impact of Alu exons in human genes. Proc Natl Acad Sci U S A 108:2837–2842
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 2837-2842
    • Shen, S.1    Lin, L.2    Cai, J.J.3
  • 195
    • 3843093872 scopus 로고    scopus 로고
    • From “junk” to gene: curriculum vitae of a primate receptor isoform gene
    • COI: 1:CAS:528:DC%2BD2cXmt1CitLo%3D, PID: 15328599
    • Singer SS, Männel DN, Hehlgans T, Brosius J, Schmitz J (2004) From “junk” to gene: curriculum vitae of a primate receptor isoform gene. J Mol Biol 341:883–886
    • (2004) J Mol Biol , vol.341 , pp. 883-886
    • Singer, S.S.1    Männel, D.N.2    Hehlgans, T.3    Brosius, J.4    Schmitz, J.5
  • 196
    • 62349089758 scopus 로고    scopus 로고
    • Molecular domestication of transposable elements: from detrimental parasites to useful host genes
    • COI: 1:CAS:528:DC%2BD1MXjtFKqsbc%3D, PID: 19132291
    • Sinzelle L, Izsvák Z, Ivics Z (2009) Molecular domestication of transposable elements: from detrimental parasites to useful host genes. Cell Mol Life Sci 66:1073–1093
    • (2009) Cell Mol Life Sci , vol.66 , pp. 1073-1093
    • Sinzelle, L.1    Izsvák, Z.2    Ivics, Z.3
  • 197
    • 19444367079 scopus 로고    scopus 로고
    • Mammalian microRNAs derived from genomic repeats
    • COI: 1:CAS:528:DC%2BD2MXks1Cmsb4%3D, PID: 15922829
    • Smalheiser NR, Torvik VI (2005) Mammalian microRNAs derived from genomic repeats. Trends Genet 21:322–326
    • (2005) Trends Genet , vol.21 , pp. 322-326
    • Smalheiser, N.R.1    Torvik, V.I.2
  • 198
    • 84897490429 scopus 로고    scopus 로고
    • Functional microRNAs and target sites are created by lineage-specific transposition
    • COI: 1:CAS:528:DC%2BC2cXmtVemsrw%3D, PID: 24234653
    • Spengler RM, Oakley CK, Davidson BL (2014) Functional microRNAs and target sites are created by lineage-specific transposition. Hum Mol Genet 23:1783–1793
    • (2014) Hum Mol Genet , vol.23 , pp. 1783-1793
    • Spengler, R.M.1    Oakley, C.K.2    Davidson, B.L.3
  • 199
    • 84928761213 scopus 로고    scopus 로고
    • The landscape of long noncoding RNA classification
    • COI: 1:CAS:528:DC%2BC2MXlsVKqsr8%3D, PID: 25869999
    • St. Laurent G, Wahlestedt C, Kapranov P (2015) The landscape of long noncoding RNA classification. Trends Genet 31:239–251
    • (2015) Trends Genet , vol.31 , pp. 239-251
    • St. Laurent, G.1    Wahlestedt, C.2    Kapranov, P.3
  • 200
    • 27744555914 scopus 로고    scopus 로고
    • Y chromosomes: born to be destroyed
    • COI: 1:CAS:528:DC%2BD2MXhtFKqtb3M, PID: 16163733
    • Steinemann S, Steinemann M (2005) Y chromosomes: born to be destroyed. BioEssays 27:1076–1083
    • (2005) BioEssays , vol.27 , pp. 1076-1083
    • Steinemann, S.1    Steinemann, M.2
  • 201
    • 84865806641 scopus 로고    scopus 로고
    • LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders
    • PID: 22200636
    • Sun C, Shepard DB, Chong RA et al (2012) LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders. Genome Biol Evol 4:168–183
    • (2012) Genome Biol Evol , vol.4 , pp. 168-183
    • Sun, C.1    Shepard, D.B.2    Chong, R.A.3
  • 202
    • 84911936991 scopus 로고    scopus 로고
    • Widespread contribution of transposable elements to the innovation of gene regulatory networks
    • COI: 1:CAS:528:DC%2BC2cXitVOls77L, PID: 25319995
    • Sundaram V, Cheng Y, Ma Z et al (2014) Widespread contribution of transposable elements to the innovation of gene regulatory networks. Genome Res 24:1963–1976
    • (2014) Genome Res , vol.24 , pp. 1963-1976
    • Sundaram, V.1    Cheng, Y.2    Ma, Z.3
  • 203
    • 84928004436 scopus 로고    scopus 로고
    • Repeated horizontal transfers of four DNA transposons in invertebrates and bats
    • PID: 25606061
    • Tang Z, Zhang HH, Huang K, Zhang XG, Han MJ, Zhang Z (2015) Repeated horizontal transfers of four DNA transposons in invertebrates and bats. Mob DNA 6:3
    • (2015) Mob DNA , vol.6 , pp. 3
    • Tang, Z.1    Zhang, H.H.2    Huang, K.3    Zhang, X.G.4    Han, M.J.5    Zhang, Z.6
  • 204
    • 82955188747 scopus 로고    scopus 로고
    • A mammalian conserved element derived from SINE displays enhancer properties recapitulating satb2 expression in early-born callosal projection neurons
    • COI: 1:CAS:528:DC%2BC3MXhs1Oqur3N, PID: 22174821
    • Tashiro K, Teissier A, Kobayashi N et al (2011) A mammalian conserved element derived from SINE displays enhancer properties recapitulating satb2 expression in early-born callosal projection neurons. PLoS One 6:e28497
    • (2011) PLoS One , vol.6 , pp. e28497
    • Tashiro, K.1    Teissier, A.2    Kobayashi, N.3
  • 205
    • 77958487981 scopus 로고    scopus 로고
    • Pervasive horizontal transfer of rolling-circle transposons among animals
    • PID: 20693155
    • Thomas J, Schaack S, Pritham EJ (2010) Pervasive horizontal transfer of rolling-circle transposons among animals. Genome Biol Evol 2:656–664
    • (2010) Genome Biol Evol , vol.2 , pp. 656-664
    • Thomas, J.1    Schaack, S.2    Pritham, E.J.3
  • 206
    • 84929996202 scopus 로고    scopus 로고
    • Rolling-circle transposons catalyze genomic innovation in a mammalian lineage
    • COI: 1:CAS:528:DC%2BC2cXitFGiu7%2FE, PID: 25223768
    • Thomas J, Phillips CD, Baker RJ, Pritham EJ (2014) Rolling-circle transposons catalyze genomic innovation in a mammalian lineage. Genome Biol Evol 6:2595–2610
    • (2014) Genome Biol Evol , vol.6 , pp. 2595-2610
    • Thomas, J.1    Phillips, C.D.2    Baker, R.J.3    Pritham, E.J.4
  • 207
    • 67650869803 scopus 로고    scopus 로고
    • The role of transposable elements in the regulation of IFN-λ1 gene expression
    • COI: 1:CAS:528:DC%2BD1MXptVKjsbg%3D, PID: 19570999
    • Thomson SJP, Goh FG, Banks H et al (2009) The role of transposable elements in the regulation of IFN-λ1 gene expression. Proc Natl Acad Sci U S A 106:11564–11569
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 11564-11569
    • Thomson, S.J.P.1    Goh, F.G.2    Banks, H.3
  • 208
    • 0026668650 scopus 로고
    • Endogenous retroviral sequences are required for tissue-specific expression of a human salivary amylase gene
    • COI: 1:CAS:528:DyaK38XlsVCktr4%3D, PID: 1379564
    • Ting CN, Rosenberg MP, Snow CM, Samuelson LC, Meisler MH (1992) Endogenous retroviral sequences are required for tissue-specific expression of a human salivary amylase gene. Genes Dev 6:1457–1465
    • (1992) Genes Dev , vol.6 , pp. 1457-1465
    • Ting, C.N.1    Rosenberg, M.P.2    Snow, C.M.3    Samuelson, L.C.4    Meisler, M.H.5
  • 209
    • 3342951462 scopus 로고    scopus 로고
    • Isolation and characterisation of GTF2IRD2, a novel fusion gene and member of the TFII-I family of transcription factors, deleted in Williams-Beuren syndrome
    • COI: 1:CAS:528:DC%2BD2cXltF2htbc%3D, PID: 15100712
    • Tipney HJ, Hinsley TA, Brass A, Metcalfe K, Donnai D, Tassabehji M (2004) Isolation and characterisation of GTF2IRD2, a novel fusion gene and member of the TFII-I family of transcription factors, deleted in Williams-Beuren syndrome. Eur J Hum Genet 12:551–560
    • (2004) Eur J Hum Genet , vol.12 , pp. 551-560
    • Tipney, H.J.1    Hinsley, T.A.2    Brass, A.3    Metcalfe, K.4    Donnai, D.5    Tassabehji, M.6
  • 210
    • 0035863861 scopus 로고    scopus 로고
    • CENP-B is not critical for meiotic chromosome segregation in male mice
    • COI: 1:CAS:528:DC%2BD3MXosFOjur8%3D, PID: 11719105
    • Tomascik-Cheeseman L, Marchetti F, Lowe X et al (2002) CENP-B is not critical for meiotic chromosome segregation in male mice. Mutat Res 513:197–203
    • (2002) Mutat Res , vol.513 , pp. 197-203
    • Tomascik-Cheeseman, L.1    Marchetti, F.2    Lowe, X.3
  • 211
    • 0021127698 scopus 로고
    • Alu sequences are processed 7SL RNA genes
    • COI: 1:CAS:528:DyaL2MXktVymtw%3D%3D, PID: 6209580
    • Ullu E, Tschudi C (1984) Alu sequences are processed 7SL RNA genes. Nature 312:171–172
    • (1984) Nature , vol.312 , pp. 171-172
    • Ullu, E.1    Tschudi, C.2
  • 212
    • 84904735424 scopus 로고    scopus 로고
    • Transcriptional regulatory functions of nuclear long noncoding RNAs
    • COI: 1:CAS:528:DC%2BC2cXhtVKhurfI, PID: 24974018
    • Vance KW, Ponting CP (2014) Transcriptional regulatory functions of nuclear long noncoding RNAs. Trends Genet 30:348–355
    • (2014) Trends Genet , vol.30 , pp. 348-355
    • Vance, K.W.1    Ponting, C.P.2
  • 213
    • 0001918159 scopus 로고    scopus 로고
    • Loss of N-glycolylneuraminic acid in humans: mechanisms, consequences, and implications for hominid evolution
    • Varki A (2001) Loss of N-glycolylneuraminic acid in humans: mechanisms, consequences, and implications for hominid evolution. Am J Phys Anthropol Suppl 33:54–69
    • (2001) Am J Phys Anthropol Suppl , vol.33 , pp. 54-69
    • Varki, A.1
  • 214
    • 77952369047 scopus 로고    scopus 로고
    • Colloquium paper: uniquely human evolution of sialic acid genetics and biology
    • COI: 1:CAS:528:DC%2BC3cXmt1yitb8%3D, PID: 20445087
    • Varki A (2010) Colloquium paper: uniquely human evolution of sialic acid genetics and biology. Proc Natl Acad Sci U S A 107(Suppl):8939–8946
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 8939-8946
    • Varki, A.1
  • 215
    • 0032530173 scopus 로고    scopus 로고
    • Determining and dating recent rodent speciation events by using L1 (LINE-1) retrotransposons
    • COI: 1:CAS:528:DyaK1cXmt1agsL4%3D, PID: 9736728
    • Verneau O, Catzeflis F, Furano AV (1998) Determining and dating recent rodent speciation events by using L1 (LINE-1) retrotransposons. Proc Natl Acad Sci U S A 95:11284–11289
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 11284-11289
    • Verneau, O.1    Catzeflis, F.2    Furano, A.V.3
  • 216
    • 84922302820 scopus 로고    scopus 로고
    • The captured retroviral envelope syncytin-A and syncytin-B genes are conserved in the Spalacidae together with hemotrichorial placentation
    • PID: 25339103
    • Vernochet C, Redelsperger F, Harper F et al (2014) The captured retroviral envelope syncytin-A and syncytin-B genes are conserved in the Spalacidae together with hemotrichorial placentation. Biol Reprod 91:148–148
    • (2014) Biol Reprod , vol.91 , pp. 148
    • Vernochet, C.1    Redelsperger, F.2    Harper, F.3
  • 217
    • 84922295278 scopus 로고    scopus 로고
    • Enhancer evolution across 20 mammalian species
    • COI: 1:CAS:528:DC%2BC2MXitFyls7k%3D, PID: 25635462
    • Villar D, Berthelot C, Aldridge S et al (2015) Enhancer evolution across 20 mammalian species. Cell 160:554–566
    • (2015) Cell , vol.160 , pp. 554-566
    • Villar, D.1    Berthelot, C.2    Aldridge, S.3
  • 218
    • 33644777605 scopus 로고    scopus 로고
    • Evolutionary fate of retroposed gene copies in the human genome
    • COI: 1:CAS:528:DC%2BD28XksF2kt7s%3D, PID: 16492757
    • Vinckenbosch N, Dupanloup I, Kaessmann H (2006) Evolutionary fate of retroposed gene copies in the human genome. Proc Natl Acad Sci U S A 103:3220–3225
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 3220-3225
    • Vinckenbosch, N.1    Dupanloup, I.2    Kaessmann, H.3
  • 219
    • 33748936552 scopus 로고    scopus 로고
    • Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes
    • COI: 1:CAS:528:DC%2BD28XhtVKqsrjM, PID: 16937363
    • Volff JN (2006) Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes. BioEssays 28:913–922
    • (2006) BioEssays , vol.28 , pp. 913-922
    • Volff, J.N.1
  • 220
    • 0345724809 scopus 로고    scopus 로고
    • Diversity of retrotransposable elements in compact pufferfish genomes
    • COI: 1:CAS:528:DC%2BD3sXpt1emsb4%3D, PID: 14642744
    • Volff JN, Bouneau L, Ozouf-Costaz C, Fischer C (2003) Diversity of retrotransposable elements in compact pufferfish genomes. Trends Genet 19:674–678
    • (2003) Trends Genet , vol.19 , pp. 674-678
    • Volff, J.N.1    Bouneau, L.2    Ozouf-Costaz, C.3    Fischer, C.4
  • 221
    • 34248189595 scopus 로고    scopus 로고
    • Governing sex determination in fish: regulatory putsches and ephemeral dictators
    • PID: 18391519
    • Volff JN, Nanda I, Schmid M, Schartl M (2007) Governing sex determination in fish: regulatory putsches and ephemeral dictators. Sex Dev 1:85–99
    • (2007) Sex Dev , vol.1 , pp. 85-99
    • Volff, J.N.1    Nanda, I.2    Schmid, M.3    Schartl, M.4
  • 222
    • 84866370634 scopus 로고    scopus 로고
    • Horizontal transposon transfer in eukarya: detection, bias, and perspectives
    • PID: 22798449
    • Wallau GL, Ortiz MF, Loreto EL (2012) Horizontal transposon transfer in eukarya: detection, bias, and perspectives. Genome Biol Evol 4:689–699
    • (2012) Genome Biol Evol , vol.4 , pp. 689-699
    • Wallau, G.L.1    Ortiz, M.F.2    Loreto, E.L.3
  • 223
    • 36749061982 scopus 로고    scopus 로고
    • Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53
    • COI: 1:CAS:528:DC%2BD2sXhtl2ku7nI, PID: 18003932
    • Wang T, Zeng J, Lowe CB et al (2007) Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53. Proc Natl Acad Sci U S A 104:18613–18618
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 18613-18618
    • Wang, T.1    Zeng, J.2    Lowe, C.B.3
  • 224
    • 84922115236 scopus 로고    scopus 로고
    • Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells
    • COI: 1:CAS:528:DC%2BC2cXhvVemtrvJ, PID: 25317556
    • Wang J, Xie G, Singh M et al (2014) Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells. Nature 516:405–409
    • (2014) Nature , vol.516 , pp. 405-409
    • Wang, J.1    Xie, G.2    Singh, M.3
  • 225
    • 84898747543 scopus 로고    scopus 로고
    • Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals
    • COI: 1:CAS:528:DC%2BC2cXmt1Crs7Y%3D, PID: 24429298
    • Washietl S, Kellis M, Garber M (2014) Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals. Genome Res 24:616–628
    • (2014) Genome Res , vol.24 , pp. 616-628
    • Washietl, S.1    Kellis, M.2    Garber, M.3
  • 226
    • 77950414161 scopus 로고    scopus 로고
    • Genomic organization of duplicated short wave-sensitive and long wave-sensitive opsin genes in the green swordtail, Xiphophorus helleri
    • PID: 20353595
    • Watson CT, Lubieniecki KP, Loew E, Davidson WS, Breden F (2010) Genomic organization of duplicated short wave-sensitive and long wave-sensitive opsin genes in the green swordtail, Xiphophorus helleri. BMC Evol Biol 10:87
    • (2010) BMC Evol Biol , vol.10 , pp. 87
    • Watson, C.T.1    Lubieniecki, K.P.2    Loew, E.3    Davidson, W.S.4    Breden, F.5
  • 227
    • 19944432437 scopus 로고    scopus 로고
    • The repetitive landscape of the chicken genome
    • PID: 15256510
    • Wicker T, Robertson JS, Schulze SR et al (2005) The repetitive landscape of the chicken genome. Genome Res 15:126–136
    • (2005) Genome Res , vol.15 , pp. 126-136
    • Wicker, T.1    Robertson, J.S.2    Schulze, S.R.3
  • 228
    • 84887091047 scopus 로고    scopus 로고
    • Origin and evolution of yolk proteins: expansion and functional diversification of large lipid transfer protein superfamily
    • PID: 23426435
    • Wu LT, Hui JHL, Chu KH (2013) Origin and evolution of yolk proteins: expansion and functional diversification of large lipid transfer protein superfamily. Biol Reprod 88:102
    • (2013) Biol Reprod , vol.88 , pp. 102
    • Wu, L.T.1    Hui, J.H.L.2    Chu, K.H.3
  • 229
    • 33845218958 scopus 로고    scopus 로고
    • Emergence of primate genes by retrotransposon-mediated sequence transduction
    • COI: 1:CAS:528:DC%2BD28Xht1KnurnP, PID: 17101974
    • Xing J, Wang H, Belancio VP, Cordaux R, Deininger PL, Batzer MA (2006) Emergence of primate genes by retrotransposon-mediated sequence transduction. Proc Natl Acad Sci U S A 103:17608–17613
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 17608-17613
    • Xing, J.1    Wang, H.2    Belancio, V.P.3    Cordaux, R.4    Deininger, P.L.5    Batzer, M.A.6
  • 230
    • 78149243536 scopus 로고    scopus 로고
    • Origin and evolution of a placental-specific microRNA family in the human genome
    • PID: 21067568
    • Yuan Z, Sun X, Jiang D et al (2010) Origin and evolution of a placental-specific microRNA family in the human genome. BMC Evol Biol 10:346
    • (2010) BMC Evol Biol , vol.10 , pp. 346
    • Yuan, Z.1    Sun, X.2    Jiang, D.3
  • 231
    • 79959876171 scopus 로고    scopus 로고
    • A single nucleotide polymorphism in a miR-1302 binding site in CGA increases the risk of idiopathic male infertility
    • COI: 1:CAS:528:DC%2BC3MXosFWgsbs%3D, PID: 21601192
    • Zhang H, Liu Y, Su D et al (2011) A single nucleotide polymorphism in a miR-1302 binding site in CGA increases the risk of idiopathic male infertility. Fertil Steril 96:34–39
    • (2011) Fertil Steril , vol.96 , pp. 34-39
    • Zhang, H.1    Liu, Y.2    Su, D.3
  • 232
    • 84883103192 scopus 로고    scopus 로고
    • Inferring the expression variability of human transposable element-derived exons by linear model analysis of deep RNA sequencing data
    • COI: 1:CAS:528:DC%2BC3sXhsVKrtL%2FE, PID: 23984937
    • Zhang W, Edwards A, Fan W, Fang Z, Deininger P, Zhang K (2013) Inferring the expression variability of human transposable element-derived exons by linear model analysis of deep RNA sequencing data. BMC Genomics 14:584
    • (2013) BMC Genomics , vol.14 , pp. 584
    • Zhang, W.1    Edwards, A.2    Fan, W.3    Fang, Z.4    Deininger, P.5    Zhang, K.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.