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Volumn 28, Issue 11, 2011, Pages 3061-3067

Human piRNAs are under selection in Africans and repress transposable elements

Author keywords

Africans; piRNAs; population genetics; selective constraint; transposable elements

Indexed keywords

PIWI INTERACTING RNA;

EID: 80155146885     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msr141     Document Type: Article
Times cited : (30)

References (36)
  • 1
    • 36749037521 scopus 로고    scopus 로고
    • The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race
    • Aravin A, Hannon G, Brennecke J. 2007. The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race. Science. 318:761-764.
    • (2007) Science , vol.318 , pp. 761-764
    • Aravin, A.1    Hannon, G.2    Brennecke, J.3
  • 2
    • 66349118913 scopus 로고    scopus 로고
    • Rapid repetitive element-mediated expansion of piRNA clusters in mammalian evolution
    • Assis R, Kondrashov A. 2009. Rapid repetitive element-mediated expansion of piRNA clusters in mammalian evolution. Proc Natl Acad Sci U S A. 106:7079-7082.
    • (2009) Proc Natl Acad Sci U S A. , vol.106 , pp. 7079-7082
    • Assis, R.1    Kondrashov, A.2
  • 3
    • 0036250811 scopus 로고    scopus 로고
    • Alu repeats and human genomic diversity
    • Batzer M, Deininger P. 2002. Alu repeats and human genomic diversity. Nat Rev Genet. 3:370-379.
    • (2002) Nat Rev Genet , vol.3 , pp. 370-379
    • Batzer, M.1    Deininger, P.2
  • 5
    • 0034086210 scopus 로고    scopus 로고
    • L1 (LINE-1) retrotransposon evolution and amplification in recent human history
    • Boissinot S, Chevret P, Furano A. 2000. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 17:915-928.
    • (2000) Mol Biol Evol , Issue.17 , pp. 915-928
    • Boissinot, S.1    Chevret, P.2    Furano, A.3
  • 6
    • 3543151399 scopus 로고    scopus 로고
    • The insertional history of an active family of L1 retrotransposons in humans
    • Boissinot S, Entezam A, Young L. 2004. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 14:1221-1231.
    • (2004) Genome Res , vol.14 , pp. 1221-1231
    • Boissinot, S.1    Entezam, A.2    Young, L.3
  • 7
    • 33947273235 scopus 로고    scopus 로고
    • Discrete small RNA-generating loci as master regulators of transposon activity inDrosophila
    • Brennecke J, Aravin A, Stark A, Dus M, Kellis M, Sachidanandam R, Hannon G. 2007. Discrete small RNA-generating loci as master regulators of transposon activity inDrosophila. Cell. 128:1089-1103.
    • (2007) Cell , vol.128 , pp. 1089-1103
    • Brennecke, J.1    Aravin, A.2    Stark, A.3    Dus, M.4    Kellis, M.5    Sachidanandam, R.6    Hannon, G.7
  • 9
    • 60149088848 scopus 로고    scopus 로고
    • Origins and mechanisms of miRNAs and siRNAs
    • Carthew R, Sontheimer E. 2009. Origins and mechanisms of miRNAs and siRNAs. Cell. 136:642-655.
    • (2009) Cell , vol.136 , pp. 642-655
    • Carthew, R.1    Sontheimer, E.2
  • 10
    • 19344378811 scopus 로고    scopus 로고
    • Functional bias and spatial organization of genes in mutational hot and cold regions in the human genome
    • Chuang J, Li H. 2004. Functional bias and spatial organization of genes in mutational hot and cold regions in the human genome. PLoS Biol. 2:e29.
    • (2004) PLoS Biol , vol.2
    • Chuang, J.1    Li, H.2
  • 11
    • 70349318211 scopus 로고    scopus 로고
    • The impact of retrotransposons on human genome evolution
    • Cordaux R, Batzer M. 2009. The impact of retrotransposons on human genome evolution. Nat Rev Genet. 10:691-703.
    • (2009) Nat Rev Genet , vol.10 , pp. 691-703
    • Cordaux, R.1    Batzer, M.2
  • 12
    • 79957933956 scopus 로고    scopus 로고
    • Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans
    • forthcoming
    • Ewing A, Kazazian H. forthcoming. 2010. Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans. Genome Res. 21:985-990.
    • (2010) Genome Res , vol.21 , pp. 985-990
    • Ewing, A.1    Kazazian, H.2
  • 13
    • 33745336617 scopus 로고    scopus 로고
    • A germline-specific class of small RNAs binds mammalian Piwi proteins
    • Girard A, Sachidanandam R, Hannon G, Carmell M. 2006. A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature. 7099:199-202.
    • (2006) Nature , vol.7099 , pp. 199-202
    • Girard, A.1    Sachidanandam, R.2    Hannon, G.3    Carmell, M.4
  • 14
    • 0034760666 scopus 로고    scopus 로고
    • A novel active L1 retrotransposon subfamily in the mouse
    • Goodier J, Ostertag E, Du K, Kazazian HJ. 2001. A novel active L1 retrotransposon subfamily in the mouse. Genome Res. 11:1677-1685.
    • (2001) Genome Res , vol.11 , pp. 1677-1685
    • Goodier, J.1    Ostertag, E.2    Du, K.3    Kazazian, H.J.4
  • 15
    • 55249115975 scopus 로고    scopus 로고
    • Early origins and evolution of microRNAs and Piwiinteracting RNAs in animals
    • Grimson A, Srivastava M, Fahey B, Woodcroft B, Chiang H, King N. 2008. Early origins and evolution of microRNAs and Piwiinteracting RNAs in animals. Nature. 455:1193-1197.
    • (2008) Nature , vol.455 , pp. 1193-1197
    • Grimson, A.1    Srivastava, M.2    Fahey, B.3    Woodcroft, B.4    Chiang, H.5    King, N.6
  • 17
    • 34547808850 scopus 로고    scopus 로고
    • Context dependence, ancestral misidentification, and spurious signatures of natural selection
    • Hernandez R, Williamson S, Bustamante C. 2007. Context dependence, ancestral misidentification, and spurious signatures of natural selection. Mol Biol Evol. 24:1792-1800.
    • (2007) Mol Biol Evol , vol.24 , pp. 1792-1800
    • Hernandez, R.1    Williamson, S.2    Bustamante, C.3
  • 18
    • 0030045979 scopus 로고
    • The age of Alu subfamilies
    • Kapitanov V, Jurka J. 1995. The age of Alu subfamilies. J Mol Evol. 42:59-65.
    • (1995) J Mol Evol , vol.42 , pp. 59-65
    • Kapitanov, V.1    Jurka, J.2
  • 19
    • 30044433182 scopus 로고    scopus 로고
    • Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates
    • Khan H, Smit A, Boissinot S. 2006. Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates. Genome Res. 16:78-87.
    • (2006) Genome Res , vol.16 , pp. 78-87
    • Khan, H.1    Smit, A.2    Boissinot, S.3
  • 20
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • (12 co-authors
    • Lander E, Linton L, Birren B, et al. (12 co-authors). 2001. Initial sequencing and analysis of the human genome. Nature. 409:860-921.
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.1    Linton, L.2    Birren, B.3
  • 22
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 25:1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 23
    • 39749139577 scopus 로고    scopus 로고
    • Proportionally more deleterious genetic variation in European than in African populations
    • Lohmueller K, Indap A, Schmidt S, Boyko A, Hernandez R, Hubisz M. 2008. Proportionally more deleterious genetic variation in European than in African populations. Nature. 451:994-997.
    • (2008) Nature , vol.451 , pp. 994-997
    • Lohmueller, K.1    Indap, A.2    Schmidt, S.3    Boyko, A.4    Hernandez, R.5    Hubisz, M.6
  • 24
    • 75649145014 scopus 로고    scopus 로고
    • Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila
    • Lu J, Clark A. 2010. Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila. Genome Res. 20:212-227.
    • (2010) Genome Res , Issue.20 , pp. 212-227
    • Lu, J.1    Clark, A.2
  • 25
    • 65549105694 scopus 로고    scopus 로고
    • Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary
    • Malone C, Brennecke J, Dus M, Stark A, McCombie W, Sachidanandam R. 2009. Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary. Cell. 137:522-535.
    • (2009) Cell , vol.137 , pp. 522-535
    • Malone, C.1    Brennecke, J.2    Dus, M.3    Stark, A.4    McCombie, W.5    Sachidanandam, R.6
  • 26
    • 60149098474 scopus 로고    scopus 로고
    • Small RNAs as guardians of the genome
    • Malone C, Hannon G. 2009. Small RNAs as guardians of the genome. Cell. 136:656-668.
    • (2009) Cell , vol.136 , pp. 656-668
    • Malone, C.1    Hannon, G.2
  • 28
    • 74949092081 scopus 로고    scopus 로고
    • Detection of nonneutral substitution rates on mammalian phylogenies
    • Pollard K, Hubisz M, Rosenbloom K, Siepel A. 2010. Detection of nonneutral substitution rates on mammalian phylogenies. Genome Res. 20:110-121.
    • (2010) Genome Res , Issue.20 , pp. 110-121
    • Pollard, K.1    Hubisz, M.2    Rosenbloom, K.3    Siepel, A.4
  • 29
    • 8744242187 scopus 로고    scopus 로고
    • Whole-genome analysis of Alu repeat elements reveals complex evolutionary history
    • Price A, Eskin E, Pevzner P. 2004. Whole-genome analysis of Alu repeat elements reveals complex evolutionary history. Genome Res. 14:2245-2252.
    • (2004) Genome Res , vol.14 , pp. 2245-2252
    • Price, A.1    Eskin, E.2    Pevzner, P.3
  • 31
    • 0028575909 scopus 로고
    • Alu repeated DNAs are differentially methylated in primate germ cells
    • Rubin C, VandeVoort C, Teplitz R, Schmid C. 1994. Alu repeated DNAs are differentially methylated in primate germ cells. Nucleic Acids Res. 22:5121-5127.
    • (1994) Nucleic Acids Res , vol.22 , pp. 5121-5127
    • Rubin, C.1    VandeVoort, C.2    Teplitz, R.3    Schmid, C.4
  • 32
    • 33845436047 scopus 로고    scopus 로고
    • Largescale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    • Ruby J, Jan C, Player C, Axtell M, Lee W, Nusbaum C. 2006. Largescale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans. Cell. 127:1193-1207.
    • (2006) Cell , vol.127 , pp. 1193-1207
    • Ruby, J.1    Jan, C.2    Player, C.3    Axtell, M.4    Lee, W.5    Nusbaum, C.6
  • 33
    • 0041571675 scopus 로고    scopus 로고
    • Recently integrated Alu elements and human genomic diversity
    • Salem A, Kilroy G, Watkins W, Jorde L, Batzer M. 2003. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 20:1349-1361.
    • (2003) Mol Biol Evol , vol.20 , pp. 1349-1361
    • Salem, A.1    Kilroy, G.2    Watkins, W.3    Jorde, L.4    Batzer, M.5
  • 34
    • 70350238350 scopus 로고    scopus 로고
    • The biogenesis and function of PIWI proteins and piRNAs: Progress and prospect
    • Thomson T, Lin H. 2009. The biogenesis and function of PIWI proteins and piRNAs: Progress and prospect. Annu Rev Cell Dev Biol. 25:355-376.
    • (2009) Annu Rev Cell Dev Biol , vol.25 , pp. 355-376
    • Thomson, T.1    Lin, H.2
  • 35
    • 67649982842 scopus 로고    scopus 로고
    • Mobile elements create structural variation: Analysis of a complete human genome
    • (11 co-authors
    • Xing J, Zhang Y, Han K, et al. (11 co-authors). 2009. Mobile elements create structural variation: Analysis of a complete human genome. Genome Res. 19:1516-1526.
    • (2009) Genome Res , vol.19 , pp. 1516-1526
    • Xing, J.1    Zhang, Y.2    Han, K.3
  • 36
    • 79952589852 scopus 로고    scopus 로고
    • A k-mer scheme to predict piRNAs and characterize locust piRNAs
    • forthcoming
    • Zhang Y, Wang X, Kang L. forthcoming. 2011. A k-mer scheme to predict piRNAs and characterize locust piRNAs. Bioinformatics. 27:771-776.
    • (2011) Bioinformatics , vol.27 , pp. 771-776
    • Zhang, Y.1    Wang, X.2    Kang, L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.