-
1
-
-
33749444113
-
Competition may determine the diversity of transposable elements
-
Abrusan G, Krambeck HJ (2006) Competition may determine the diversity of transposable elements. Theor Popul Biol 70: 364-375.
-
(2006)
Theor Popul Biol
, vol.70
, pp. 364-375
-
-
Abrusan, G.1
Krambeck, H.J.2
-
2
-
-
0032551829
-
Transposition mediated by RAG1 and RAG2 and its implications for the evolution of the immune system
-
Agrawal A, Eastman QM, Schatz DG (1998) Transposition mediated by RAG1 and RAG2 and its implications for the evolution of the immune system. Nature 394: 744-751.
-
(1998)
Nature
, vol.394
, pp. 744-751
-
-
Agrawal, A.1
Eastman, Q.M.2
Schatz, D.G.3
-
3
-
-
15544378974
-
Human endogenous retrovirus glycoprotein-mediated induction of redox reactants causes oligodendrocyte death and demyelination
-
Antony JM, van Marle G, Opii W et al. (2004) Human endogenous retrovirus glycoprotein-mediated induction of redox reactants causes oligodendrocyte death and demyelination. Nat Neurosci 7: 1088-1095.
-
(2004)
Nat Neurosci
, vol.7
, pp. 1088-1095
-
-
Antony, J.M.1
Van Marle, G.2
Opii, W.3
-
4
-
-
0037162885
-
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
-
Aparicio S, Chapman J, Stupka E et al. (2002) Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297: 1301-1310.
-
(2002)
Science
, vol.297
, pp. 1301-1310
-
-
Aparicio, S.1
Chapman, J.2
Stupka, E.3
-
5
-
-
18244405064
-
Chromosome speciation: Humans, Drosophila, and mosquitoes
-
Supplement 1
-
Ayala FJ, Coluzzi M (2005) Chromosome speciation: humans, Drosophila, and mosquitoes. Proc Natl Acad Sci USA 102 (Supplement 1): 6535-6542.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 6535-6542
-
-
Ayala, F.J.1
Coluzzi, M.2
-
6
-
-
33646928347
-
A distal enhancer and an ultraconserved exon are derived from a novel retroposon
-
Bejerano G, Lowe CB, Ahituv N et al. (2006) A distal enhancer and an ultraconserved exon are derived from a novel retroposon. Nature 441: 87-90.
-
(2006)
Nature
, vol.441
, pp. 87-90
-
-
Bejerano, G.1
Lowe, C.B.2
Ahituv, N.3
-
7
-
-
16344379697
-
High copy number in human endogenous retrovirus families is associated with copying mechanisms in addition to reinfection
-
Belshaw R, Katzourakis A, Paces J, Burt A, Tristem M (2005) High copy number in human endogenous retrovirus families is associated with copying mechanisms in addition to reinfection. Mol Biol Evol 22: 814-817.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 814-817
-
-
Belshaw, R.1
Katzourakis, A.2
Paces, J.3
Burt, A.4
Tristem, M.5
-
8
-
-
0029763293
-
Positional cloning of the mouse retrovirus restriction gene Fv1
-
Best S, Le Tissier P, Towers G, Stoye JP (1996) Positional cloning of the mouse retrovirus restriction gene Fv1. Nature 382: 826-829.
-
(1996)
Nature
, vol.382
, pp. 826-829
-
-
Best, S.1
Le Tissier, P.2
Towers, G.3
Stoye, J.P.4
-
9
-
-
33749522239
-
Genetics: Junk DNA as an evolutionary force
-
Biémont C, Vieira C (2006) Genetics: junk DNA as an evolutionary force. Nature 443: 521-524.
-
(2006)
Nature
, vol.443
, pp. 521-524
-
-
Biémont, C.1
Vieira, C.2
-
10
-
-
0242300065
-
Genomewide screening for fusogenic human endogenous retrovirus envelopes identifies syncytin 2, a gene conserved on primate evolution
-
Blaise S, de Parseval N, Benit L, Heidmann T (2003) Genomewide screening for fusogenic human endogenous retrovirus envelopes identifies syncytin 2, a gene conserved on primate evolution. Proc Natl Acad Sci USA 100: 13013-13018.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 13013-13018
-
-
Blaise, S.1
De Parseval, N.2
Benit, L.3
Heidmann, T.4
-
11
-
-
0035207819
-
Adaptive evolution in LINE-1 retrotransposons
-
Boissinot S, Furano AV (2001) Adaptive evolution in LINE-1 retrotransposons. Mol Biol Evol 18: 2186-2194.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 2186-2194
-
-
Boissinot, S.1
Furano, A.V.2
-
12
-
-
0038148190
-
An active non-LTR retrotransposon with tandem structure in the compact genome of the pufferfish Tetraodon nigroviridis
-
Bouneau L, Fischer C, Ozouf-Costaz C et al. (2003) An active non-LTR retrotransposon with tandem structure in the compact genome of the pufferfish Tetraodon nigroviridis. Genome Res 13: 1686-1695.
-
(2003)
Genome Res
, vol.13
, pp. 1686-1695
-
-
Bouneau, L.1
Fischer, C.2
Ozouf-Costaz, C.3
-
13
-
-
13444257816
-
Transposable elements as a source of genetic innovation: Expression and evolution of a family of retrotransposon-derived neogenes in mammals
-
Brandt J, Schrauth S, Veith AM et al. (2005) Transposable elements as a source of genetic innovation: expression and evolution of a family of retrotransposon-derived neogenes in mammals. Gene 345: 101-111.
-
(2005)
Gene
, vol.345
, pp. 101-111
-
-
Brandt, J.1
Schrauth, S.2
Veith, A.M.3
-
14
-
-
0025098497
-
I transposable elements and I-R hybrid dysgenesis in Drosophila
-
Bucheton A (1990) I transposable elements and I-R hybrid dysgenesis in Drosophila. Trends Genet 6: 16-21.
-
(1990)
Trends Genet
, vol.6
, pp. 16-21
-
-
Bucheton, A.1
-
15
-
-
33750151691
-
Computational characterization of multiple Gag-like human proteins
-
Campillos M, Doerks T, Shah PK, Bork P (2006) Computational characterization of multiple Gag-like human proteins. Trends Genet 22: 585-589.
-
(2006)
Trends Genet
, vol.22
, pp. 585-589
-
-
Campillos, M.1
Doerks, T.2
Shah, P.K.3
Bork, P.4
-
16
-
-
0034128820
-
The end of the LINE?: Lack of recent L1 activity in a group of South American rodents
-
Casavant NC, Scott L, Cantrell MA, Wiggins LE, Baker RJ, Wichman HA (2000) The end of the LINE?: lack of recent L1 activity in a group of South American rodents. Genetics 154: 1809-1817.
-
(2000)
Genetics
, vol.154
, pp. 1809-1817
-
-
Casavant, N.C.1
Scott, L.2
Cantrell, M.A.3
Wiggins, L.E.4
Baker, R.J.5
Wichman, H.A.6
-
17
-
-
39749190990
-
Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals
-
(Oct 16); [Epub ahead of print].
-
Casola C, Hucks D, Feschotte C (2007) Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals. Mol Biol Evol (Oct 16); [Epub ahead of print].
-
(2007)
Mol Biol Evol
-
-
Casola, C.1
Hucks, D.2
Feschotte, C.3
-
18
-
-
22844438250
-
A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease
-
Chen JM, Stenson PD, Cooper DN, Ferec C (2005) A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease. Hum Genet 117: 411-427.
-
(2005)
Hum Genet
, vol.117
, pp. 411-427
-
-
Chen, J.M.1
Stenson, P.D.2
Cooper, D.N.3
Ferec, C.4
-
19
-
-
24344500211
-
Initial sequence of the chimpanzee genome and comparison with the human genome
-
Chimpanzee Sequencing and Analysis Consortium
-
Chimpanzee Sequencing and Analysis Consortium (2005) Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437: 69-87.
-
(2005)
Nature
, vol.437
, pp. 69-87
-
-
-
20
-
-
33744497802
-
Birth of a chimeric primate gene by capture of the transposase gene from a mobile element
-
Cordaux R, Udit S, Batzer MA, Feschotte C (2006) Birth of a chimeric primate gene by capture of the transposase gene from a mobile element. Proc Natl Acad Sci USA 103: 8101-8106.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 8101-8106
-
-
Cordaux, R.1
Udit, S.2
Batzer, M.A.3
Feschotte, C.4
-
21
-
-
0242636324
-
The outs and ins of transposition: From mu to kangaroo
-
Curcio MJ, Derbyshire KM (2003) The outs and ins of transposition: from mu to kangaroo. Nat Rev Mol Cell Biol 4: 865-877.
-
(2003)
Nat Rev Mol Cell Biol
, vol.4
, pp. 865-877
-
-
Curcio, M.J.1
Derbyshire, K.M.2
-
22
-
-
0037108746
-
Remarkable compartmentalization of transposable elements and pseudogenes in the heterochromatin of the Tetraodon nigroviridis genome
-
Dasilva C, Hadji H, Ozouf-Costaz C et al. (2002) Remarkable compartmentalization of transposable elements and pseudogenes in the heterochromatin of the Tetraodon nigroviridis genome. Proc Natl Acad Sci USA 99: 13636-13641.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 13636-13641
-
-
Dasilva, C.1
Hadji, H.2
Ozouf-Costaz, C.3
-
23
-
-
2242464840
-
The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins
-
Dehal P, Satou Y, Campbell RK et al. (2002) The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science 298: 2157-2167.
-
(2002)
Science
, vol.298
, pp. 2157-2167
-
-
Dehal, P.1
Satou, Y.2
Campbell, R.K.3
-
25
-
-
0041353551
-
LINE-mediated retrotransposition of marked Alu sequences
-
Dewannieux M, Esnault C, Heidmann T (2003) LINE-mediated retrotransposition of marked Alu sequences. Nat Genet 35: 41-48.
-
(2003)
Nat Genet
, vol.35
, pp. 41-48
-
-
Dewannieux, M.1
Esnault, C.2
Heidmann, T.3
-
26
-
-
0018894384
-
Selfish genes, the phenotype paradigm and genome evolution
-
Doolittle WF, Sapienza C (1980) Selfish genes, the phenotype paradigm and genome evolution. Nature 284: 601-603.
-
(1980)
Nature
, vol.284
, pp. 601-603
-
-
Doolittle, W.F.1
Sapienza, C.2
-
27
-
-
33749254071
-
Endogenous retroviruses regulate periimplantation placental growth and differentiation
-
Dunlap KA, Palmarini M, Varela M et al. (2006). Endogenous retroviruses regulate periimplantation placental growth and differentiation. Proc Natl Acad Sci USA 103: 14390-14395.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 14390-14395
-
-
Dunlap, K.A.1
Palmarini, M.2
Varela, M.3
-
28
-
-
14144254156
-
Syncytin-A and syncytin-B, two fusogenic placenta-specific murine envelope genes of retroviral origin conserved in Muridae
-
Dupressoir A, Marceau G, Vernochet C et al. (2005) Syncytin-A and syncytin-B, two fusogenic placenta-specific murine envelope genes of retroviral origin conserved in Muridae. Proc Natl Acad Sci USA 102: 725-730.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 725-730
-
-
Dupressoir, A.1
Marceau, G.2
Vernochet, C.3
-
29
-
-
85158069207
-
Origins and evolution of retrotransposons
-
ASM Press Washington
-
Eickbush TH, Malik HS (2002) Origins and evolution of retrotransposons. In: Craig NL, Craigie R, Gellert M, Lambowitz AM, eds., Mobile DNA II, ASM Press, Washington, pp. 1111-1144.
-
(2002)
Mobile DNA II
, pp. 1111-1144
-
-
Eickbush, T.H.1
Malik, H.S.2
Craig, N.L.3
Craigie, R.4
Gellert, M.5
Lambowitz, A.M.6
-
30
-
-
23844456247
-
Penelope-like elements - A new class of retroelements: Distribution, function and possible evolutionary significance
-
Evgen'ev MB, Arkhipova IR (2005) Penelope-like elements - a new class of retroelements: distribution, function and possible evolutionary significance. Cytogenet Genome Res 110: 510-521.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 510-521
-
-
Evgen'Ev, M.B.1
Arkhipova, I.R.2
-
31
-
-
37549029474
-
DNA transposons and the evolution of eukaryotic genomes
-
Feschotte C, Pritham EJ (2007) DNA transposons and the evolution of eukaryotic genomes. Annu Rev Genet 41: 331-368.
-
(2007)
Annu Rev Genet
, vol.41
, pp. 331-368
-
-
Feschotte, C.1
Pritham, E.J.2
-
32
-
-
23844468088
-
Hybrid genome evolution by transposition
-
Fontdevila A (2005) Hybrid genome evolution by transposition. Cytogenet Genome Res 110: 49-55.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 49-55
-
-
Fontdevila, A.1
-
33
-
-
0348048755
-
L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish
-
Furano AV, Duvernell DD, Boissinot S (2004) L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish. Trends Genet 20: 9-14.
-
(2004)
Trends Genet
, vol.20
, pp. 9-14
-
-
Furano, A.V.1
Duvernell, D.D.2
Boissinot, S.3
-
34
-
-
34248512741
-
Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica
-
Gentles AJ, Wakefield MJ, Kohany O et al. (2007) Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica. Genome Res 17: 992-1004.
-
(2007)
Genome Res
, vol.17
, pp. 992-1004
-
-
Gentles, A.J.1
Wakefield, M.J.2
Kohany, O.3
-
35
-
-
1842684068
-
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
-
Gibbs RA, Weinstock GM, Metzker ML et al. (2004) Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature 428: 493-521.
-
(2004)
Nature
, vol.428
, pp. 493-521
-
-
Gibbs, R.A.1
Weinstock, G.M.2
Metzker, M.L.3
-
37
-
-
24644516249
-
LINE-1 retrotransposons: Modulators of quantity and quality of mammalian gene expression?
-
Han JS, Boeke JD (2005) LINE-1 retrotransposons: modulators of quantity and quality of mammalian gene expression? Bioessays 27: 775-784.
-
(2005)
Bioessays
, vol.27
, pp. 775-784
-
-
Han, J.S.1
Boeke, J.D.2
-
38
-
-
35948983427
-
Alu recombination-mediated structural deletions in the chimpanzee genome
-
Han K, Lee J, Meyer TJ et al. (2007) Alu recombination-mediated structural deletions in the chimpanzee genome. PLoS Genet 3: e184.
-
(2007)
PLoS Genet
, vol.3
, pp. 184
-
-
Han, K.1
Lee, J.2
Meyer, T.J.3
-
39
-
-
34250701215
-
Retrotransposons influence the mouse transcriptome: Implication for the divergence of genetic traits
-
Horie K, Saito ES, Keng VW, Ikeda R, Ishihara H, Takeda J (2007) Retrotransposons influence the mouse transcriptome: implication for the divergence of genetic traits. Genetics 176: 815-827.
-
(2007)
Genetics
, vol.176
, pp. 815-827
-
-
Horie, K.1
Saito, E.S.2
Keng, V.W.3
Ikeda, R.4
Ishihara, H.5
Takeda, J.6
-
40
-
-
35748943568
-
Acquisition of endonuclease specificity during evolution of L1 retrotransposon
-
Ichiyanagi K, Nishihara H, Duvernell DD, Okada N (2007) Acquisition of endonuclease specificity during evolution of L1 retrotransposon. Mol Biol Evol 24: 2009-2015.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2009-2015
-
-
Ichiyanagi, K.1
Nishihara, H.2
Duvernell, D.D.3
Okada, N.4
-
41
-
-
10644283823
-
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
-
International Chicken Genome Sequencing Consortium
-
International Chicken Genome Sequencing Consortium (2004) Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432: 695-716.
-
(2004)
Nature
, vol.432
, pp. 695-716
-
-
-
42
-
-
7244259101
-
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
-
Jaillon O, Aury JM, Brunet F et al. (2004) Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 431: 946-957.
-
(2004)
Nature
, vol.431
, pp. 946-957
-
-
Jaillon, O.1
Aury, J.M.2
Brunet, F.3
-
43
-
-
22744445703
-
RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons
-
Kapitonov VV, Jurka J (2005) RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons. PLoS Biol 3: e181.
-
(2005)
PLoS Biol
, vol.3
, pp. 181
-
-
Kapitonov, V.V.1
Jurka, J.2
-
44
-
-
33645227457
-
Self-synthesizing DNA transposons in eukaryotes
-
Kapitonov VV, Jurka J (2006) Self-synthesizing DNA transposons in eukaryotes. Proc Natl Acad Sci USA 103: 4540-4545.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 4540-4545
-
-
Kapitonov, V.V.1
Jurka, J.2
-
45
-
-
34848876954
-
Helitrons on a roll: Eukaryotic rolling-circle transposons
-
Kapitonov VV, Jurka J (2007) Helitrons on a roll: eukaryotic rolling-circle transposons. Trends Genet 23: 521-529.
-
(2007)
Trends Genet
, vol.23
, pp. 521-529
-
-
Kapitonov, V.V.1
Jurka, J.2
-
46
-
-
34249994907
-
The medaka draft genome and insights into vertebrate genome evolution
-
Kasahara M, Naruse K, Sasaki S et al. (2007) The medaka draft genome and insights into vertebrate genome evolution. Nature 447: 714-719.
-
(2007)
Nature
, vol.447
, pp. 714-719
-
-
Kasahara, M.1
Naruse, K.2
Sasaki, S.3
-
47
-
-
1542513556
-
Mobile elements: Drivers of genome evolution
-
Kazazian HH Jr (2004) Mobile elements: drivers of genome evolution. Science 303: 1626-1632.
-
(2004)
Science
, vol.303
, pp. 1626-1632
-
-
Kazazian Jr., H.H.1
-
48
-
-
33846376502
-
Structural divergence between the human and chimpanzee genomes
-
Kehrer-Sawatzki H, Cooper DN (2007) Structural divergence between the human and chimpanzee genomes. Hum Genet 120: 759-778.
-
(2007)
Hum Genet
, vol.120
, pp. 759-778
-
-
Kehrer-Sawatzki, H.1
Cooper, D.N.2
-
49
-
-
0032168623
-
Unusual horizontal transfer of a long interspersed nuclear element between distant vertebrate classes
-
Kordis D, Gubensek F (1998) Unusual horizontal transfer of a long interspersed nuclear element between distant vertebrate classes. Proc Natl Acad Sci USA 95: 10704-10709.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 10704-10709
-
-
Kordis, D.1
Gubensek, F.2
-
50
-
-
34547643930
-
Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs)
-
Krull M, Petrusma M, Makalowski W, Brosius J, Schmitz J (2007) Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs). Genome Res 17: 1139-1145.
-
(2007)
Genome Res
, vol.17
, pp. 1139-1145
-
-
Krull, M.1
Petrusma, M.2
Makalowski, W.3
Brosius, J.4
Schmitz, J.5
-
51
-
-
0035822688
-
A novel family of predicted retroviral-like aspartyl proteases with a possible key role in eukaryotic cell cycle control
-
Krylov DM, Koonin EV (2001) A novel family of predicted retroviral-like aspartyl proteases with a possible key role in eukaryotic cell cycle control. Curr Biol 11: R584-R587.
-
(2001)
Curr Biol
, vol.11
-
-
Krylov, D.M.1
Koonin, E.V.2
-
52
-
-
0035933310
-
Birth of a gene: Locus of neuronal BC200 snmRNA in three prosimians and human BC200 pseudogenes as archives of change in the Anthropoidea lineage
-
Kuryshev VY, Skryabin BV, Kremerskothen J, Jurka J, Brosius J (2001) Birth of a gene: locus of neuronal BC200 snmRNA in three prosimians and human BC200 pseudogenes as archives of change in the Anthropoidea lineage. J Mol Biol 309: 1049-1066.
-
(2001)
J Mol Biol
, vol.309
, pp. 1049-1066
-
-
Kuryshev, V.Y.1
Skryabin, B.V.2
Kremerskothen, J.3
Jurka, J.4
Brosius, J.5
-
53
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B et al. (2001) Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
-
54
-
-
28644447707
-
Genome sequence, comparative analysis and haplotype structure of the domestic dog
-
Lindblad-Toh K, Wade CM, Mikkelsen TS et al. (2005) Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 438: 803-819.
-
(2005)
Nature
, vol.438
, pp. 803-819
-
-
Lindblad-Toh, K.1
Wade, C.M.2
Mikkelsen, T.S.3
-
55
-
-
34249937354
-
Thousands of human mobile element fragments undergo strong purifying selection near developmental genes
-
Lowe CB, Bejerano G, Haussler D (2007) Thousands of human mobile element fragments undergo strong purifying selection near developmental genes. Proc Natl Acad Sci USA 104: 8005-8010.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 8005-8010
-
-
Lowe, C.B.1
Bejerano, G.2
Haussler, D.3
-
56
-
-
0027450385
-
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
-
Luan DD, Korman MH, Jakubczak JL, Eickbush TH (1993) Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72: 595-605.
-
(1993)
Cell
, vol.72
, pp. 595-605
-
-
Luan, D.D.1
Korman, M.H.2
Jakubczak, J.L.3
Eickbush, T.H.4
-
57
-
-
0034612242
-
LINE-1 elements and X chromosome inactivation: A function for "junk" DNA?
-
Lyon MF (2000) LINE-1 elements and X chromosome inactivation: a function for "junk" DNA? Proc Natl Acad Sci USA 97: 6248-6249.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 6248-6249
-
-
Lyon, M.F.1
-
58
-
-
1242319527
-
The endogenous retroviral locus ERVWE1 is a bona fide gene involved in hominoid placental physiology
-
Mallet F, Bouton O, Prudhomme S et al. (2004) The endogenous retroviral locus ERVWE1 is a bona fide gene involved in hominoid placental physiology. Proc Natl Acad Sci USA 101: 1731-1736.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 1731-1736
-
-
Mallet, F.1
Bouton, O.2
Prudhomme, S.3
-
59
-
-
33748490697
-
Gene transposition as a cause of hybrid sterility in Drosophila
-
Masly JP, Jones CD, Noor MA, Locke J, Orr HA (2006) Gene transposition as a cause of hybrid sterility in Drosophila. Science 313: 1448-1450.
-
(2006)
Science
, vol.313
, pp. 1448-1450
-
-
Masly, J.P.1
Jones, C.D.2
Noor, M.A.3
Locke, J.4
Orr, H.A.5
-
60
-
-
0342545919
-
Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis
-
Mi S, Lee X, Li XP et al. (2000). Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis. Nature 403: 785-789.
-
(2000)
Nature
, vol.403
, pp. 785-789
-
-
Mi, S.1
Lee, X.2
Li, X.P.3
-
61
-
-
34248576291
-
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
-
Mikkelsen TS, Wakefield MJ, Aken B et al. (2007) Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature 447: 167-177.
-
(2007)
Nature
, vol.447
, pp. 167-177
-
-
Mikkelsen, T.S.1
Wakefield, M.J.2
Aken, B.3
-
62
-
-
33645464594
-
Recently mobilized transposons in the human and chimpanzee genomes
-
Mills RE, Bennett EA, Iskow RC et al. (2006) Recently mobilized transposons in the human and chimpanzee genomes. Am J Hum Genet 78: 671-679.
-
(2006)
Am J Hum Genet
, vol.78
, pp. 671-679
-
-
Mills, R.E.1
Bennett, E.A.2
Iskow, R.C.3
-
64
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Mouse Genome Sequencing Consortium
-
Mouse Genome Sequencing Consortium (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
-
65
-
-
0032489351
-
Reversing time: Origin of telomerase
-
Nakamura TM, Cech TR (1998) Reversing time: origin of telomerase. Cell 92: 587-590.
-
(1998)
Cell
, vol.92
, pp. 587-590
-
-
Nakamura, T.M.1
Cech, T.R.2
-
66
-
-
0037432734
-
Chromosomal speciation and molecular divergence - Accelerated evolution in rearranged chromosomes
-
Navarro A, Barton NH (2003) Chromosomal speciation and molecular divergence - accelerated evolution in rearranged chromosomes. Science 300: 321-324.
-
(2003)
Science
, vol.300
, pp. 321-324
-
-
Navarro, A.1
Barton, N.H.2
-
67
-
-
8444229706
-
Different regulatory mechanisms underlie similar transposable element profiles in pufferfish and fruitflies
-
Neafsey DE, Blumenstiel JP, Hartl DL (2004) Different regulatory mechanisms underlie similar transposable element profiles in pufferfish and fruitflies. Mol Biol Evol 21: 2310-2318.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 2310-2318
-
-
Neafsey, D.E.1
Blumenstiel, J.P.2
Hartl, D.L.3
-
68
-
-
0035500898
-
Transposable elements are found in a large number of human protein-coding genes
-
Nekrutenko A, Li WH (2001) Transposable elements are found in a large number of human protein-coding genes. Trends Genet 17: 619-621.
-
(2001)
Trends Genet
, vol.17
, pp. 619-621
-
-
Nekrutenko, A.1
Li, W.H.2
-
69
-
-
33745620751
-
Functional noncoding sequences derived from SINEs in the mammalian genome
-
Nishihara H, Smit AF, Okada N (2006) Functional noncoding sequences derived from SINEs in the mammalian genome. Genome Res 16: 864-874.
-
(2006)
Genome Res
, vol.16
, pp. 864-874
-
-
Nishihara, H.1
Smit, A.F.2
Okada, N.3
-
70
-
-
33750005972
-
Evolutionary genetics: Jumping into a new species
-
Noor MA, Chang AS (2006) Evolutionary genetics: jumping into a new species. Curr Biol 16: R890-R892.
-
(2006)
Curr Biol
, vol.16
-
-
Noor, M.A.1
Chang, A.S.2
-
71
-
-
0009673698
-
Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid
-
O'Neill RJ, O'Neill MJ, Graves JA (1998) Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid. Nature 393: 68-72.
-
(1998)
Nature
, vol.393
, pp. 68-72
-
-
O'Neill, R.J.1
O'Neill, M.J.2
Graves, J.A.3
-
72
-
-
29444434486
-
Deletion of Peg10, an imprinted gene acquired from a retrotransposon, causes early embryonic lethality
-
Ono R, Nakamura K, Inoue K et al. (2006) Deletion of Peg10, an imprinted gene acquired from a retrotransposon, causes early embryonic lethality. Nat Genet 38: 101-106.
-
(2006)
Nat Genet
, vol.38
, pp. 101-106
-
-
Ono, R.1
Nakamura, K.2
Inoue, K.3
-
73
-
-
0018857680
-
Selfish DNA: The ultimate parasite
-
Orgel LE, Crick FH (1980) Selfish DNA: the ultimate parasite. Nature 284: 604-607.
-
(1980)
Nature
, vol.284
, pp. 604-607
-
-
Orgel, L.E.1
Crick, F.H.2
-
74
-
-
34147105638
-
The evolutionary history of human DNA transposons: Evidence for intense activity in the primate lineage
-
Pace JK II, Feschotte C (2007) The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage. Genome Res 17: 422-432.
-
(2007)
Genome Res
, vol.17
, pp. 422-432
-
-
Pace II, J.K.1
Feschotte, C.2
-
75
-
-
5044251591
-
Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos
-
Peaston AE, Evsikov AV, Graber JH et al. (2004). Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos. Dev Cell 7: 597-606.
-
(2004)
Dev Cell
, vol.7
, pp. 597-606
-
-
Peaston, A.E.1
Evsikov, A.V.2
Graber, J.H.3
-
76
-
-
0342313559
-
Frequent human genomic DNA transduction driven by LINE-1 retrotransposition
-
Pickeral OK, Makalowski W, Boguski MS, Boeke JD (2000) Frequent human genomic DNA transduction driven by LINE-1 retrotransposition. Genome Res 10: 411-415.
-
(2000)
Genome Res
, vol.10
, pp. 411-415
-
-
Pickeral, O.K.1
Makalowski, W.2
Boguski, M.S.3
Boeke, J.D.4
-
77
-
-
34250729886
-
Origin and evolution of human microRNAs from transposable elements
-
Piriyapongsa J, Marino-Ramirez L, Jordan IK (2007) Origin and evolution of human microRNAs from transposable elements. Genetics 176: 1323-1337.
-
(2007)
Genetics
, vol.176
, pp. 1323-1337
-
-
Piriyapongsa, J.1
Marino-Ramirez, L.2
Jordan, I.K.3
-
78
-
-
34547505117
-
Poxviruses as possible vectors for horizontal transfer of retroposons from reptiles to mammals
-
Piskurek O, Okada N (2007) Poxviruses as possible vectors for horizontal transfer of retroposons from reptiles to mammals. Proc Natl Acad Sci USA 104: 12046-12051.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 12046-12051
-
-
Piskurek, O.1
Okada, N.2
-
79
-
-
23844559179
-
DIRS-1 and the other tyrosine recombinase retrotransposons
-
Poulter RT, Goodwin TJ (2005) DIRS-1 and the other tyrosine recombinase retrotransposons. Cytogenet Genome Res 110: 575-588.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 575-588
-
-
Poulter, R.T.1
Goodwin, T.J.2
-
80
-
-
33846931279
-
Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus
-
Pritham EJ, Feschotte C (2007) Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus. Proc Natl Acad Sci USA 104: 1895-1900.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 1895-1900
-
-
Pritham, E.J.1
Feschotte, C.2
-
81
-
-
33846939973
-
Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses
-
Pritham EJ, Putliwala T, Feschotte C (2007) Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses. Gene 390: 3-17.
-
(2007)
Gene
, vol.390
, pp. 3-17
-
-
Pritham, E.J.1
Putliwala, T.2
Feschotte, C.3
-
82
-
-
6944240085
-
Reverse transcriptase and endonuclease activities encoded by Penelope-like retroelements
-
Pyatkov KI, Arkhipova IR, Malkova NV, Finnegan DJ, Evgen'ev MB (2004) Reverse transcriptase and endonuclease activities encoded by Penelope-like retroelements. Proc Natl Acad Sci USA 101: 14719-14724.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 14719-14724
-
-
Pyatkov, K.I.1
Arkhipova, I.R.2
Malkova, N.V.3
Finnegan, D.J.4
Evgen'Ev, M.B.5
-
84
-
-
34247352040
-
Evolutionary and biomedical insights from the rhesus macaque genome
-
Rhesus Macaque Genome Sequencing and Analysis Consortium
-
Rhesus Macaque Genome Sequencing and Analysis Consortium (2007) Evolutionary and biomedical insights from the rhesus macaque genome. Science 316: 222-234.
-
(2007)
Science
, vol.316
, pp. 222-234
-
-
-
85
-
-
8744304935
-
An active murine transposon family pair: Retrotransposition of "master" MusD copies and ETn trans-mobilization
-
Ribet D, Dewannieux M, Heidmann T (2004) An active murine transposon family pair: retrotransposition of "master" MusD copies and ETn trans-mobilization. Genome Res 14: 2261-2267.
-
(2004)
Genome Res
, vol.14
, pp. 2261-2267
-
-
Ribet, D.1
Dewannieux, M.2
Heidmann, T.3
-
86
-
-
35948981635
-
Ancient exaptation of a CORE-SINE retroposon into a highly conserved mammalian neuronal enhancer of the proopiomelanocortin gene
-
Santangelo AM, de Souza FS, Franchini LF, Bumaschny VF, LowMJ, Rubinstein M (2007) Ancient exaptation of a CORE-SINE retroposon into a highly conserved mammalian neuronal enhancer of the proopiomelanocortin gene. PLoS Genet 3: e166.
-
(2007)
PLoS Genet
, vol.3
, pp. 166
-
-
Santangelo, A.M.1
De Souza, F.S.2
Franchini, L.F.3
Bumaschny, V.F.4
Low, M.J.5
Rubinstein, M.6
-
87
-
-
27344449164
-
The human PNMA family: Novel neuronal proteins implicated in paraneoplastic neurological disease
-
Schuller M, Jenne D, Voltz R (2005) The human PNMA family: novel neuronal proteins implicated in paraneoplastic neurological disease. J Neuroimmunol 169: 172-176.
-
(2005)
J Neuroimmunol
, vol.169
, pp. 172-176
-
-
Schuller, M.1
Jenne, D.2
Voltz, R.3
-
88
-
-
33646256347
-
Extensive individual variation in L1 retrotransposition capability contributes to human genetic diversity
-
Seleme MC, Vetter MR, Cordaux R, Bastone L, Batzer MA, Kazazian HH Jr. (2006) Extensive individual variation in L1 retrotransposition capability contributes to human genetic diversity. Proc Natl Acad Sci USA 103: 6611-6616.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 6611-6616
-
-
Seleme, M.C.1
Vetter, M.R.2
Cordaux, R.3
Bastone, L.4
Batzer, M.A.5
Kazazian Jr., H.H.6
-
89
-
-
33745244299
-
Human genomic deletions mediated by recombination between Alu elements
-
Sen SK, Han K, Wang J et al. (2006) Human genomic deletions mediated by recombination between Alu elements. Am J Hum Genet 79: 41-53.
-
(2006)
Am J Hum Genet
, vol.79
, pp. 41-53
-
-
Sen, S.K.1
Han, K.2
Wang, J.3
-
90
-
-
0347949569
-
Genome structure and thymic expression of an endogenous retrovirus in zebrafish
-
Shen CH, Steiner LA (2004) Genome structure and thymic expression of an endogenous retrovirus in zebrafish. J Virol 78: 899-911.
-
(2004)
J Virol
, vol.78
, pp. 899-911
-
-
Shen, C.H.1
Steiner, L.A.2
-
91
-
-
33947303168
-
Transposable elements and the epigenetic regulation of the genome
-
Slotkin RK, Martienssen R (2007) Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 8: 272-285.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 272-285
-
-
Slotkin, R.K.1
Martienssen, R.2
-
92
-
-
33745972414
-
Retroviral invasion of the koala genome
-
Tarlinton RE, Meers J, Young PR (2006) Retroviral invasion of the koala genome. Nature 442: 79-81.
-
(2006)
Nature
, vol.442
, pp. 79-81
-
-
Tarlinton, R.E.1
Meers, J.2
Young, P.R.3
-
93
-
-
31844443500
-
Transposable elements as a significant source of transcription regulating signals
-
Thornburg BG, Gotea V, Makalowski W (2006) Transposable elements as a significant source of transcription regulating signals. Gene 365: 104-110.
-
(2006)
Gene
, vol.365
, pp. 104-110
-
-
Thornburg, B.G.1
Gotea, V.2
Makalowski, W.3
-
94
-
-
0029159814
-
Epileptic seizures caused by inactivation of a novel gene, jerky, related to centromere binding protein-B in transgenic mice
-
Toth M, Grimsby J, Buzsaki G, Donovan GP (1995) Epileptic seizures caused by inactivation of a novel gene, jerky, related to centromere binding protein-B in transgenic mice. Nat Genet 11: 71-75.
-
(1995)
Nat Genet
, vol.11
, pp. 71-75
-
-
Toth, M.1
Grimsby, J.2
Buzsaki, G.3
Donovan, G.P.4
-
95
-
-
0141561907
-
Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions
-
van de Lagemaat LN, Landry JR, Mager DL, Medstrand P (2003) Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions. Trends Genet 19: 530-536.
-
(2003)
Trends Genet
, vol.19
, pp. 530-536
-
-
Van De Lagemaat, L.N.1
Landry, J.R.2
Mager, D.L.3
Medstrand, P.4
-
96
-
-
34247342594
-
Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome
-
Venkatesh B, Kirkness EF, Loh YH et al. (2007) Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome. PLoS Biol 5: e101.
-
(2007)
PLoS Biol
, vol.5
, pp. 101
-
-
Venkatesh, B.1
Kirkness, E.F.2
Loh, Y.H.3
-
98
-
-
33748936552
-
Turning junk into gold: Domestication of transposable elements and the creation of new genes in eukaryotes
-
Volff JN (2006) Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes. Bioessays 28: 913-922.
-
(2006)
Bioessays
, vol.28
, pp. 913-922
-
-
Volff, J.N.1
-
99
-
-
38549180414
-
Modern genomes with retro-look: Retrotransposed elements, retroposition and the origin of new genes
-
Volff JN, Brosius J (2007) Modern genomes with retro-look: retrotransposed elements, retroposition and the origin of new genes. Genome Dyn 3: 175-190.
-
(2007)
Genome Dyn
, vol.3
, pp. 175-190
-
-
Volff, J.N.1
Brosius, J.2
-
100
-
-
0033745895
-
Multiple lineages of the non-LTR retrotransposon Rex1 with varying success in invading fish genomes
-
Volff JN, Korting C, Schartl M (2000) Multiple lineages of the non-LTR retrotransposon Rex1 with varying success in invading fish genomes. Mol Biol Evol 17: 1673-1684.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 1673-1684
-
-
Volff, J.N.1
Korting, C.2
Schartl, M.3
-
101
-
-
0034882247
-
Fish retroposons related to the Penelope element of Drosophila virilis define a new group of retrotransposable elements
-
Volff JN, Hornung U, Schartl M (2001a) Fish retroposons related to the Penelope element of Drosophila virilis define a new group of retrotransposable elements. Mol Genet Genomics 265: 711-720.
-
(2001)
Mol Genet Genomics
, vol.265
, pp. 711-720
-
-
Volff, J.N.1
Hornung, U.2
Schartl, M.3
-
102
-
-
0035052604
-
Non-LTR retrotransposons encoding a restriction enzyme-like endonuclease in vertebrates
-
Volff JN, Korting C, Froschauer A, Sweeney K, Schartl M (2001b) Non-LTR retrotransposons encoding a restriction enzyme-like endonuclease in vertebrates. J Mol Evol 52: 351-360.
-
(2001)
J Mol Evol
, vol.52
, pp. 351-360
-
-
Volff, J.N.1
Korting, C.2
Froschauer, A.3
Sweeney, K.4
Schartl, M.5
-
103
-
-
0035103096
-
Evolution and discontinuous distribution of Rex3 retrotransposons in fish
-
Volff JN, Korting C, Meyer A, Schartl M (2001c) Evolution and discontinuous distribution of Rex3 retrotransposons in fish. Mol Biol Evol 18: 427-431.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 427-431
-
-
Volff, J.N.1
Korting, C.2
Meyer, A.3
Schartl, M.4
-
104
-
-
0345724809
-
Diversity of retrotransposable elements in compact pufferfish genomes
-
Volff JN, Bouneau L, Ozouf-Costaz C, Fischer C (2003) Diversity of retrotransposable elements in compact pufferfish genomes. Trends Genet 19: 674-678.
-
(2003)
Trends Genet
, vol.19
, pp. 674-678
-
-
Volff, J.N.1
Bouneau, L.2
Ozouf-Costaz, C.3
Fischer, C.4
-
105
-
-
28444448708
-
SVA elements: A hominid-specific retroposon family
-
Wang H, Xing J, Grover D et al. (2005) SVA elements: a hominid-specific retroposon family. J Mol Biol 354: 994-1007.
-
(2005)
J Mol Biol
, vol.354
, pp. 994-1007
-
-
Wang, H.1
Xing, J.2
Grover, D.3
-
106
-
-
19944432437
-
The repetitive landscape of the chicken genome
-
Wicker T, Robertson JS, Schulze SR et al. (2005) The repetitive landscape of the chicken genome. Genome Res 15: 126-136.
-
(2005)
Genome Res
, vol.15
, pp. 126-136
-
-
Wicker, T.1
Robertson, J.S.2
Schulze, S.R.3
-
107
-
-
33845218958
-
Emergence of primate genes by retrotransposon-mediated sequence transduction
-
Xing J, Wang H, Belancio VP, Cordaux R, Deininger PL, Batzer MA (2006) Emergence of primate genes by retrotransposon-mediated sequence transduction. Proc Natl Acad Sci USA 103: 17608-17613.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 17608-17613
-
-
Xing, J.1
Wang, H.2
Belancio, V.P.3
Cordaux, R.4
Deininger, P.L.5
Batzer, M.A.6
-
108
-
-
13944250658
-
Protein coding potential of retroviruses and other transposable elements in vertebrate genomes
-
Zdobnov EM, Campillos M, Harrington ED, Torrents D, Bork P (2005) Protein coding potential of retroviruses and other transposable elements in vertebrate genomes. Nucleic Acids Res 33: 946-954
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 946-954
-
-
Zdobnov, E.M.1
Campillos, M.2
Harrington, E.D.3
Torrents, D.4
Bork, P.5
-
109
-
-
33645866187
-
Helitron transposons on the sex chromosomes of the platyfish Xiphophorus maculatus and their evolution in animal genomes
-
Zhou Q, Froschauer A, Schultheis C et al. (2006) Helitron transposons on the sex chromosomes of the platyfish Xiphophorus maculatus and their evolution in animal genomes. Zebrafish 3: 39-52.
-
(2006)
Zebrafish
, vol.3
, pp. 39-52
-
-
Zhou, Q.1
Froschauer, A.2
Schultheis, C.3
|