-
1
-
-
27844481977
-
Subfunctionalization of expression and peptide domains following the ancient duplication of the proopiomelanocortin gene in teleost fishes
-
de Souza FS, Bumaschny VF, Low MJ, Rubinstein M (2005) Subfunctionalization of expression and peptide domains following the ancient duplication of the proopiomelanocortin gene in teleost fishes. Mol Biol Evol 22: 2417-2427.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 2417-2427
-
-
de Souza, F.S.1
Bumaschny, V.F.2
Low, M.J.3
Rubinstein, M.4
-
2
-
-
0043026937
-
Proopiomelanocortin, a polypeptide precursor with multiple functions: From physiology to pathological conditions
-
Raffin-Sanson ML, de Keyzer Y, Bertagna X (2003) Proopiomelanocortin, a polypeptide precursor with multiple functions: from physiology to pathological conditions. Eur J Endocrinol 149: 79-90.
-
(2003)
Eur J Endocrinol
, vol.149
, pp. 79-90
-
-
Raffin-Sanson, M.L.1
de Keyzer, Y.2
Bertagna, X.3
-
4
-
-
16544385282
-
Role of proopiomelanocortin neurons and peptides in the regulation of energy homeostasis
-
Low MJ (2004) Role of proopiomelanocortin neurons and peptides in the regulation of energy homeostasis. J Endocrinol Invest 27: 95-100.
-
(2004)
J Endocrinol Invest
, vol.27
, pp. 95-100
-
-
Low, M.J.1
-
5
-
-
16244381143
-
Identification of neuronal enhancers of the proopiomelanocortin gene by transgenic mouse analysis and phylogenetic footprinting
-
de Souza FS, Santangelo AM, Bumaschny V, Avale ME, Smart JL, et al. (2005) Identification of neuronal enhancers of the proopiomelanocortin gene by transgenic mouse analysis and phylogenetic footprinting. Mol Cell Biol 25: 3076-3086.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 3076-3086
-
-
de Souza, F.S.1
Santangelo, A.M.2
Bumaschny, V.3
Avale, M.E.4
Smart, J.L.5
-
6
-
-
0032171573
-
Authentic cell-specific and developmentally regulated expression of proopiomelanocortin genomic fragments in hypothalamic and hindbrain neurons of transgenic mice
-
Young JI, Otero V, Cerdan MG, Falzone TL, Chan EC, et al. (1998) Authentic cell-specific and developmentally regulated expression of proopiomelanocortin genomic fragments in hypothalamic and hindbrain neurons of transgenic mice. J Neurosci 18: 6631-6640.
-
(1998)
J Neurosci
, vol.18
, pp. 6631-6640
-
-
Young, J.I.1
Otero, V.2
Cerdan, M.G.3
Falzone, T.L.4
Chan, E.C.5
-
7
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, et al. (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
-
8
-
-
7244245762
-
Finishing the euchromatic sequence of the human genome
-
Consortium HGS
-
Consortium HGS (2004) Finishing the euchromatic sequence of the human genome. Nature 431: 931-945.
-
(2004)
Nature
, vol.431
, pp. 931-945
-
-
-
9
-
-
0013161988
-
The contribution of RNAs and retroposition to evolutionary novelties
-
Brosius J (2003) The contribution of RNAs and retroposition to evolutionary novelties. Genetica 118: 99-116.
-
(2003)
Genetica
, vol.118
, pp. 99-116
-
-
Brosius, J.1
-
10
-
-
1542513556
-
Mobile elements: Drivers of genome evolution
-
Kazazian HH Jr. (2004) Mobile elements: drivers of genome evolution. Science 303: 1626-1632.
-
(2004)
Science
, vol.303
, pp. 1626-1632
-
-
Kazazian Jr., H.H.1
-
11
-
-
0033289533
-
Genomes were forged by massive bombardments with retroelements and retrosequences
-
Brosius J (1999) Genomes were forged by massive bombardments with retroelements and retrosequences. Genetica 107: 209-238.
-
(1999)
Genetica
, vol.107
, pp. 209-238
-
-
Brosius, J.1
-
12
-
-
0038701605
-
The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons
-
Lev-Maor G, Sorek R, Shomron N, Ast G (2003) The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons. Science 300: 1288-1291.
-
(2003)
Science
, vol.300
, pp. 1288-1291
-
-
Lev-Maor, G.1
Sorek, R.2
Shomron, N.3
Ast, G.4
-
13
-
-
0036064148
-
Alu-containing exons are alternatively spliced
-
Sorek R, Ast G, Graur D (2002) Alu-containing exons are alternatively spliced. Genome Res 12: 1060-1067.
-
(2002)
Genome Res
, vol.12
, pp. 1060-1067
-
-
Sorek, R.1
Ast, G.2
Graur, D.3
-
14
-
-
0026447994
-
On "genomenclature": A comprehensive (and respectful) taxonomy for pseudogenes and other "junk DNA". Proc
-
Brosius J, Gould SJ (1992) On "genomenclature": a comprehensive (and respectful) taxonomy for pseudogenes and other "junk DNA". Proc Natl Acad Sci U S A 89: 10706-10710.
-
(1992)
Natl Acad Sci U S A
, vol.89
, pp. 10706-10710
-
-
Brosius, J.1
Gould, S.J.2
-
15
-
-
0020402387
-
Exaptation: A missing term in the science of form
-
Gould SJ, Vrba E (1982) Exaptation: a missing term in the science of form. Paleobiology 8: 4-15.
-
(1982)
Paleobiology
, vol.8
, pp. 4-15
-
-
Gould, S.J.1
Vrba, E.2
-
16
-
-
34249937354
-
Thousands of human mobile element fragments undergo strong purifying selection near developmental genes
-
Lowe CB, Bejerano G, Haussler D (2007) Thousands of human mobile element fragments undergo strong purifying selection near developmental genes. Proc Natl Acad Sci U S A 104: 8005-8010.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 8005-8010
-
-
Lowe, C.B.1
Bejerano, G.2
Haussler, D.3
-
17
-
-
33746801653
-
A family of conserved noncoding elements derived from an ancient transposable element
-
Xie X, Kamal M, Lander ES (2006) A family of conserved noncoding elements derived from an ancient transposable element. Proc Natl Acad Sci U S A 103: 11659-11664.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 11659-11664
-
-
Xie, X.1
Kamal, M.2
Lander, E.S.3
-
18
-
-
33745620751
-
Functional noncoding sequences derived from SINEs in the mammalian genome
-
Nishihara H, Smit AF, Okada N (2006) Functional noncoding sequences derived from SINEs in the mammalian genome. Genome Res 16: 864-874.
-
(2006)
Genome Res
, vol.16
, pp. 864-874
-
-
Nishihara, H.1
Smit, A.F.2
Okada, N.3
-
19
-
-
33644503176
-
A large family of ancient repeat elements in the human genome is under strong selection
-
Kamal M, Xie X, Lander ES (2006) A large family of ancient repeat elements in the human genome is under strong selection. Proc Natl Acad Sci U S A 103: 2740-2745.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 2740-2745
-
-
Kamal, M.1
Xie, X.2
Lander, E.S.3
-
20
-
-
34248512741
-
Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica
-
Gentles AJ, Wakefield MJ, Kohany O, Gu W, Batzer MA, et al. (2007) Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica. Genome Res 17: 992-1004.
-
(2007)
Genome Res
, vol.17
, pp. 992-1004
-
-
Gentles, A.J.1
Wakefield, M.J.2
Kohany, O.3
Gu, W.4
Batzer, M.A.5
-
21
-
-
33646928347
-
A distal enhancer and an ultraconserved exon are derived from a novel retroposon
-
Bejerano G, Lowe CB, Ahituv N, King B, Siepel A, et al. (2006) A distal enhancer and an ultraconserved exon are derived from a novel retroposon. Nature 441: 87-90.
-
(2006)
Nature
, vol.441
, pp. 87-90
-
-
Bejerano, G.1
Lowe, C.B.2
Ahituv, N.3
King, B.4
Siepel, A.5
-
22
-
-
34047108602
-
The delayed rise of present-day mammals
-
Bininda-Emonds OR, Cardillo M, Jones KE, MacPhee RD, Beck RM, et al. (2007) The delayed rise of present-day mammals. Nature 446: 507-512.
-
(2007)
Nature
, vol.446
, pp. 507-512
-
-
Bininda-Emonds, O.R.1
Cardillo, M.2
Jones, K.E.3
MacPhee, R.D.4
Beck, R.M.5
-
23
-
-
0028363018
-
In situ hybridization analysis of anterior pituitary hormone gene expression during fetal mouse development
-
Japon MA, Rubinstein M, Low MJ (1994) In situ hybridization analysis of anterior pituitary hormone gene expression during fetal mouse development. J Histochem Cytochem 42: 1117-1125.
-
(1994)
J Histochem Cytochem
, vol.42
, pp. 1117-1125
-
-
Japon, M.A.1
Rubinstein, M.2
Low, M.J.3
-
24
-
-
0028971143
-
MatInd and MatInspector: New fast and versatile tools for detection of consensus matches in nucleotide sequence data
-
Quandt K, Frech K, Karas H, Wingender E, Werner T (1995) MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Res 23: 4878-4884.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 4878-4884
-
-
Quandt, K.1
Frech, K.2
Karas, H.3
Wingender, E.4
Werner, T.5
-
25
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, et al. (2005) Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res 110: 462-467.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
-
26
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
27
-
-
0033017956
-
CORE-SINEs: Eukaryotic short interspersed retroposing elements with common sequence motifs
-
Gilbert N, Labuda D (1999) CORE-SINEs: eukaryotic short interspersed retroposing elements with common sequence motifs. Proc Natl Acad Sci U S A 96: 2869-2874.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 2869-2874
-
-
Gilbert, N.1
Labuda, D.2
-
28
-
-
0034607549
-
Evolutionary inventions and continuity of CORE-SINEs in mammals
-
Gilbert N, Labuda D (2000) Evolutionary inventions and continuity of CORE-SINEs in mammals. J Mol Biol 298: 365-377.
-
(2000)
J Mol Biol
, vol.298
, pp. 365-377
-
-
Gilbert, N.1
Labuda, D.2
-
29
-
-
0036177682
-
V-SINEs: A new superfamily of vertebrate SINEs that are widespread in vertebrate genomes and retain a strongly conserved segment within each repetitive unit
-
Ogiwara I, Miya M, Ohshima K, Okada N (2002) V-SINEs: a new superfamily of vertebrate SINEs that are widespread in vertebrate genomes and retain a strongly conserved segment within each repetitive unit. Genome Res 12: 316-324.
-
(2002)
Genome Res
, vol.12
, pp. 316-324
-
-
Ogiwara, I.1
Miya, M.2
Ohshima, K.3
Okada, N.4
-
30
-
-
0001414578
-
SINEs: Short interspersed repeated elements of the eukaryotic genome
-
Okada N (1991) SINEs: Short interspersed repeated elements of the eukaryotic genome. Trends Ecol Evol 6: 358-361.
-
(1991)
Trends Ecol Evol
, vol.6
, pp. 358-361
-
-
Okada, N.1
-
31
-
-
0028861735
-
Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the mesozoic era
-
Jurka J, Zietkiewicz E, Labuda D (1995) Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the mesozoic era. Nucleic Acids Res 23: 170-175.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 170-175
-
-
Jurka, J.1
Zietkiewicz, E.2
Labuda, D.3
-
32
-
-
0028804572
-
MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation
-
Smit AF, Riggs AD (1995) MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation. Nucleic Acids Res 23: 98-102.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 98-102
-
-
Smit, A.F.1
Riggs, A.D.2
-
33
-
-
0029927086
-
The 3′ ends of tRNA-derived short interspersed repetitive elements are derived from the 3′ ends of long interspersed repetitive elements
-
Ohshima K, Hamada M, Terai Y, Okada N (1996) The 3′ ends of tRNA-derived short interspersed repetitive elements are derived from the 3′ ends of long interspersed repetitive elements. Mol Cell Biol 16: 3756-3764.
-
(1996)
Mol Cell Biol
, vol.16
, pp. 3756-3764
-
-
Ohshima, K.1
Hamada, M.2
Terai, Y.3
Okada, N.4
-
34
-
-
23844437243
-
SINEs and LINEs: Symbionts of eukaryotic genomes with a common tail
-
Ohshima K, Okada N (2005) SINEs and LINEs: symbionts of eukaryotic genomes with a common tail. Cytogenet Genome Res 110: 475-490.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 475-490
-
-
Ohshima, K.1
Okada, N.2
-
35
-
-
0034809990
-
Evolutionary dynamics and evolutionary history in the RTE clade of non-LTR retrotransposons
-
Zupunski V, Gubensek F, Kordis D (2001) Evolutionary dynamics and evolutionary history in the RTE clade of non-LTR retrotransposons. Mol Biol Evol 18: 1849-1863.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1849-1863
-
-
Zupunski, V.1
Gubensek, F.2
Kordis, D.3
-
36
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, et al. (2005) Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res 15: 1034-1050.
-
(2005)
Genome Res
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
-
37
-
-
33645213700
-
Interaction partners for human ZNF384/CIZ/NMP4-zyxin as a mediator for p130CAS signaling?
-
Janssen H, Marynen P (2006) Interaction partners for human ZNF384/CIZ/NMP4-zyxin as a mediator for p130CAS signaling? Exp Cell Res 312: 1194-1204.
-
(2006)
Exp Cell Res
, vol.312
, pp. 1194-1204
-
-
Janssen, H.1
Marynen, P.2
-
38
-
-
1842584947
-
Applied bioinformatics for the identification of regulatory elements
-
Wasserman WW, Sandelin A (2004) Applied bioinformatics for the identification of regulatory elements. Nat Rev Genet 5: 276-287.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 276-287
-
-
Wasserman, W.W.1
Sandelin, A.2
-
39
-
-
0034598832
-
Evidence for stabilizing selection in a eukaryotic enhancer element
-
Ludwig MZ, Bergman C, Patel NH, Kreitman M (2000) Evidence for stabilizing selection in a eukaryotic enhancer element. Nature 403: 564-567.
-
(2000)
Nature
, vol.403
, pp. 564-567
-
-
Ludwig, M.Z.1
Bergman, C.2
Patel, N.H.3
Kreitman, M.4
-
40
-
-
0029129326
-
Identification of a new subclass of Alu DNA repeats which can function as estrogen receptor-dependent transcriptional enhancers
-
Norris J, Fan D, Aleman C, Marks JR, Futreal PA, et al. (1995) Identification of a new subclass of Alu DNA repeats which can function as estrogen receptor-dependent transcriptional enhancers. J Biol Chem 270: 22777-22782.
-
(1995)
J Biol Chem
, vol.270
, pp. 22777-22782
-
-
Norris, J.1
Fan, D.2
Aleman, C.3
Marks, J.R.4
Futreal, P.A.5
-
41
-
-
33846955397
-
Widespread Alu repeatdriven expansion of consensus DR2 retinoic acid response elements during primate evolution
-
Laperriere D, Wang TT, White JH, Mader S (2007) Widespread Alu repeatdriven expansion of consensus DR2 retinoic acid response elements during primate evolution. BMC Genomics 8: 23.
-
(2007)
BMC Genomics
, vol.8
, pp. 23
-
-
Laperriere, D.1
Wang, T.T.2
White, J.H.3
Mader, S.4
-
42
-
-
0032715524
-
Association of some potential hormone response elements in human genes with the Alu family repeats
-
Babich V, Aksenov N, Alexeenko V, Oei SL, Buchlow G, et al. (1999) Association of some potential hormone response elements in human genes with the Alu family repeats. Gene 239: 341-349.
-
(1999)
Gene
, vol.239
, pp. 341-349
-
-
Babich, V.1
Aksenov, N.2
Alexeenko, V.3
Oei, S.L.4
Buchlow, G.5
-
43
-
-
0031593249
-
Mobile elements inserted in the distant past have taken on important functions
-
Britten RJ (1997) Mobile elements inserted in the distant past have taken on important functions. Gene 205: 177-182.
-
(1997)
Gene
, vol.205
, pp. 177-182
-
-
Britten, R.J.1
-
44
-
-
0242331629
-
An endogenous retroviral long terminal repeat is the dominant promoter for human beta1,3-galactosyltransferase 5 in the colon
-
Dunn CA, Medstrand P, Mager DL (2003) An endogenous retroviral long terminal repeat is the dominant promoter for human beta1,3-galactosyltransferase 5 in the colon. Proc Natl Acad Sci U S A 100: 12841-12846.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 12841-12846
-
-
Dunn, C.A.1
Medstrand, P.2
Mager, D.L.3
-
45
-
-
3242876311
-
BLAST: At the core of a powerful and diverse set of sequence analysis tools
-
McGinnis S, Madden TL (2004) BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res 32: W20-W25.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
McGinnis, S.1
Madden, T.L.2
-
46
-
-
3242810318
-
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
-
Kumar S, Tamura K, Nei M (2004) MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 5: 150-163.
-
(2004)
Brief Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
47
-
-
15844406550
-
HyPhy: Hypothesis testing using phylogenies
-
Pond SL, Frost SD, Muse SV (2005) HyPhy: hypothesis testing using phylogenies. Bioinformatics 21: 676-679.
-
(2005)
Bioinformatics
, vol.21
, pp. 676-679
-
-
Pond, S.L.1
Frost, S.D.2
Muse, S.V.3
-
48
-
-
0025325983
-
The ©megaprimer© method of site-directed mutagenesis
-
Sarkar G, Sommer SS (1990) The ©megaprimer© method of site-directed mutagenesis. Biotechniques 8: 404-407.
-
(1990)
Biotechniques
, vol.8
, pp. 404-407
-
-
Sarkar, G.1
Sommer, S.S.2
-
49
-
-
0034023062
-
Pax2 and homeodomain proteins cooperatively regulate a 435 bp enhancer of the mouse Pax5 gene at the midbrain-hindbrain boundary
-
Pfeffer PL, Bouchard M, Busslinger M (2000) Pax2 and homeodomain proteins cooperatively regulate a 435 bp enhancer of the mouse Pax5 gene at the midbrain-hindbrain boundary. Development 127: 1017-1028.
-
(2000)
Development
, vol.127
, pp. 1017-1028
-
-
Pfeffer, P.L.1
Bouchard, M.2
Busslinger, M.3
|