Molecular evolution of Bov-B LINEs in vertebrates

Gene

Volumn 238, Issue 1, 1999, Pages 171-178

  Kordiš, Dušan ^a   Gubenšek, Franc ^a,b  

^a JO EF STEFAN INSTITUTE   (Slovenia)

^b UNIVERSITY OF LJUBLJANA   (Slovenia)

Author keywords

Horizontal transfer; Non LTR retrotransposon; Squamata

Indexed keywords

NUCLEOTIDE; RNA DIRECTED DNA POLYMERASE;

CATTLE; CONTROLLED STUDY; GENE; GENETIC DISTANCE; MAMMAL; MOLECULAR EVOLUTION; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; RETROPOSON; REVIEW; SNAKE; TRANSPOSON; VERTEBRATE;

AMPHIBIA; BOS TAURUS; BOVIDAE; COLUBROIDEA; MAMMALIA; REPTILIA; RUMINANTIA; SERPENTES; SQUAMATA; VERTEBRATA; VIPERIDAE;

EID: 0344172788     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(99)00260-7     Document Type: Article

References (38)

1. Burke W.D., Malik H.S., Lathe III W.C., Eickbush T.H. Are retrotransposons long-term hitchhikers. Nature. 392:1998;141-142.
2. Buntjer J.B., Hoff J.A., Lenstra J.A. Artiodactyl interspersed DNA repeats in cetacean genomes. J. Mol. Evol. 45:1997;66-69.
3. Capy P., Anxolabehere D., Langin T. The strange phylogenies of transposable elements: are horizontal transfers the only explanation? Trends Genet. 10:1994;7-12.
4. Clark J.B., Kidwell M.G. A phylogenetic perspective on P transposable element evolution in Drosophila. Proc. Natl. Acad. Sci. USA. 94:1997;11428-11433.
5. Deininger P.L., Batzer M.A., Hutchinson III C.A., Edgell M.H. Master genes in mammalian repetitive DNA amplification. Trends Genet. 8:1992;307-311.
6. Duncan C.H. Novel Alu-type repeats in artiodactyls. Nucleic Acids Res. 15:1987;1340.
7. Eickbush D.G., Eickbush T.H. Vertical transmission of the retrotransposable elements R1 and R2 during the evolution of the Drosophila melanogaster. Genetics. 139:1995;671-684.
8. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:1981;368-376.
9. Fitch W.M. Toward defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 20:1971;406-416.
10. Gueiros-Filho F.J., Beverley S.M. Trans-kingdom transposition of the Drosophila element mariner within the protozoan Leishmania. Science. 276:1997;1716-1719.
11. Hamada M., Kido Y., Himberg M., Reist J.D., Ying C., Hasegawa M., Okada N. A newly isolated family of short interspersed repetitive elements (SINEs) in coregonid fishes (whitefish) with sequences that are almost identical to those of the Sma I family of repeats: possible evidence for the horizontal transfer of SINEs. Genetics. 146:1997;355-367.
12. Houck M.A., Clark J.B., Peterson K.R., Kidwell M.G. Possible horizontal transfer of Drosophila genes by the mite Proctolaelaps regalis. Science. 253:1991;1125-1129.
13. Hutchison III C.A., Hardies S.C., Loeb D.D., Shehee W.R., Edgell M.H. LINEs and related retroposons. Berg D.E., Howe M.M. Mobile DNA. 1989;593-617 American Society for Microbiology, Washington, DC.
14. Jobse C., Buntjer J.B., Haagsma N., Breukelman H.J., Beintema J.J., Lenstra J.A. Evolution and recombination of bovine DNA repeats. J. Mol. Evol. 41:1995;277-283.
15. John T.R., Smith L.A., Kaiser I.I. Genomic sequences encoding the acidic and basic subunits of Mojave toxin: unusually high sequence identity of non-coding regions. Gene. 139:1994;229-234.
16. Kajikawa M., Ohshima K., Okada N. Determination of the entire sequence of turtle CR1: the first open reading frame of the turtle CR1 element encodes a protein with a novel zinc finger motif. Mol. Biol. Evol. 14:1997;1206-1217.
17. Kidwell M.G. Lateral transfer in natural populations of eukaryotes. Annu. Rev. Genet. 27:1993;235-256.
18. Kordiš D., Gubenšek F. Horizontal SINE transfer between vertebrate classes. Nat. Genet. 10:1995;131-132.
19. 2 genes. Eur. J. Biochem. 240:1996;83-89.
20. 2 genes and in genomes of Viperidae snakes. Eur. J. Biochem. 246:1997;772-779.
21. Kordiš D., Gubenšek F. Unusual horizontal transfer of a long interspersed nuclear element between distant vertebrate classes. Proc. Natl. Acad. Sci. USA. 95:1998;10704-10709.
22. Lenstra J.A., Van Boxtel J.A.F., Zwaagstra K.A., Schwerin M. Short interspersed nuclear element (SINE) sequences of the Bovidae. Anim. Genet. 24:1993;33-39.
23. Li W.H., Gojobori T., Nei M. Pseudogenes as a paradigm of neutral evolution. Nature. 292:1981;237-239.
24. Majewska K., Szemraj J., Plucienniczak G., Jaworski J., Plucienniczak A. A new family of dispersed, highly repetitive sequences in bovine genome. Biochim. Biophys. Acta. 949:1988;119-124.
25. Malik H.S., Eickbush T.H. The RTE class of non-LTR retrotransposons is widely distributed in animals and is the origin of many SINEs. Mol. Biol. Evol. 15:1998;1123-1134.
26. Modi W.S., Gallagher D.S., Womack J.E. Evolutionary histories of highly repeated DNA families among the Artiodactyla (Mammalia). J. Mol. Evol. 42:1996;337-349.
27. 2 isozyme genes. Proc. Natl. Acad. Sci. USA. 92:1995;5605-5609.
28. Nobukuni T., Kobayashi M., Omori A., Ichinose S., Iwanaga T., Takahashi I., Hashimoto K., Hattori S., Kaibuchi K., Miyata Y., Masui T., Iwashita S. An Alu-linked repetitive sequence corresponding to 280 amino acids is expressed in a novel bovine protein, but not in its human homologue. J. Biol. Chem. 272:1997;2801-2807.
29. Okada N., Hamada M. The 3′ ends of of tRNA-derived SINEs originated from the 3′ end of LINEs: a new example from the bovine genome. J. Mol. Evol. 44:(Suppl.):1997;52-56.
30. Okada N., Hamada M., Ogiwara I., Ohshima K. SINEs and LINEs share common 3′ sequences: a review. Gene. 205:1997;229-243.
31. Pascale E., Liu C., Valle E., Usdin K., Furano V. The evolution of long interspersed repeated DNA (L1, LINE 1) as revealed by the analysis of an ancient rodent L1 DNA family. J. Mol. Evol. 36:1993;9-20.
32. Robertson H.M. The mariner transposable element is widespread in insects. Nature. 362:1993;241-245.
33. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425.
34. Smit A.F.A. The origin of interspersed repeats in the human genome. Curr. Opin. Genet. Dev. 6:1996;743-748.
35. Smit A.F.A., Toth G., Riggs A.D., Jurka J. Ancestral mammalian-wide subfamilies of LINE-1 repetitive sequences. J. Mol. Biol. 246:1995;401-417.
36. Szemraj J., Plucienniczak G., Jaworski J., Plucienniczak A. Bovine Alu-like sequences mediate transposition of a new site-specific retroelement. Gene. 152:1995;261-264.
37. Van de Peer Y., de Wachter R. TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput. Appl. Biosci. 10:1994;569-570.
38. Zug G.R. Herpetology: An Introductory Biology of Amphibians and Reptiles. 1993;Academic Press, San Diego.