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Volumn 41, Issue 4, 2009, Pages 424-429

Segmental copy number variation shapes tissue transcriptomes

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTOME;

EID: 63449117467     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng.345     Document Type: Article
Times cited : (246)

References (36)
  • 1
    • 4444291843 scopus 로고    scopus 로고
    • Detection of large-scale variation in the human genome
    • Iafrate, A.J. et al. Detection of large-scale variation in the human genome. Nat. Genet. 36, 949-951 (2004).
    • (2004) Nat. Genet , vol.36 , pp. 949-951
    • Iafrate, A.J.1
  • 2
    • 3242808027 scopus 로고    scopus 로고
    • Large-scale copy number polymorphism in the human genome
    • Sebat, J. et al. Large-scale copy number polymorphism in the human genome. Science 305, 525-528 (2004).
    • (2004) Science , vol.305 , pp. 525-528
    • Sebat, J.1
  • 3
    • 35348988679 scopus 로고    scopus 로고
    • Paired-end mapping reveals extensive structural variation in the human genome
    • Korbel, J.O. et al. Paired-end mapping reveals extensive structural variation in the human genome. Science 318, 420-426 (2007).
    • (2007) Science , vol.318 , pp. 420-426
    • Korbel, J.O.1
  • 4
    • 43049143055 scopus 로고    scopus 로고
    • Mapping and sequencing of structural variation from eight human genomes
    • Kidd, J.M. et al. Mapping and sequencing of structural variation from eight human genomes. Nature 453, 56-64 (2008).
    • (2008) Nature , vol.453 , pp. 56-64
    • Kidd, J.M.1
  • 5
    • 33751329250 scopus 로고    scopus 로고
    • Global variation in copy number in the human genome
    • Redon, R. et al. Global variation in copy number in the human genome. Nature 444, 444-454 (2006).
    • (2006) Nature , vol.444 , pp. 444-454
    • Redon, R.1
  • 7
    • 34248525150 scopus 로고    scopus 로고
    • Completing the map of human genetic variation
    • Eichler, E.E. et al. Completing the map of human genetic variation. Nature 447, 161-165 (2007).
    • (2007) Nature , vol.447 , pp. 161-165
    • Eichler, E.E.1
  • 8
    • 34748895999 scopus 로고    scopus 로고
    • Diet and the evolution of human amylase gene copy number variation
    • Perry, G.H. et al. Diet and the evolution of human amylase gene copy number variation. Nat. Genet. 39, 1256-1260 (2007).
    • (2007) Nat. Genet , vol.39 , pp. 1256-1260
    • Perry, G.H.1
  • 9
    • 33846978695 scopus 로고    scopus 로고
    • Relative impact of nucleotide and copy number variation on gene expression phenotypes
    • Stranger, B.E. et al. Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science 315, 848-853 (2007).
    • (2007) Science , vol.315 , pp. 848-853
    • Stranger, B.E.1
  • 10
    • 33746514973 scopus 로고    scopus 로고
    • Submicroscopic deletion in patients with Williams-Beuren syndrome influences expression levels of the nonhemizygous flanking genes
    • Merla, G. et al. Submicroscopic deletion in patients with Williams-Beuren syndrome influences expression levels of the nonhemizygous flanking genes. Am. J. Hum. Genet. 79, 332-341 (2006).
    • (2006) Am. J. Hum. Genet , vol.79 , pp. 332-341
    • Merla, G.1
  • 11
    • 4444242992 scopus 로고    scopus 로고
    • Genomic segmental polymorphisms in inbred mouse strains
    • Li, J. et al. Genomic segmental polymorphisms in inbred mouse strains. Nat. Genet. 36, 952-954 (2004).
    • (2004) Nat. Genet , vol.36 , pp. 952-954
    • Li, J.1
  • 12
    • 20944442436 scopus 로고    scopus 로고
    • Complex haplotypes, copy number polymorphisms and coding variation in two recently divergent mouse strains
    • Adams, D.J. et al. Complex haplotypes, copy number polymorphisms and coding variation in two recently divergent mouse strains. Nat. Genet. 37, 532-536 (2005).
    • (2005) Nat. Genet , vol.37 , pp. 532-536
    • Adams, D.J.1
  • 13
    • 20044371978 scopus 로고    scopus 로고
    • Mapping segmental and sequence variations among laboratory mice using BAC array CGH
    • Snijders, A.M. et al. Mapping segmental and sequence variations among laboratory mice using BAC array CGH. Genome Res. 15, 302-311 (2005).
    • (2005) Genome Res , vol.15 , pp. 302-311
    • Snijders, A.M.1
  • 14
    • 33846614650 scopus 로고    scopus 로고
    • A high-resolution map of segmental DNA copy number variation in the mouse genome
    • Graubert, T.A. et al. A high-resolution map of segmental DNA copy number variation in the mouse genome. PLoS Genet. 3, e3 (2007).
    • (2007) PLoS Genet , vol.3
    • Graubert, T.A.1
  • 15
    • 35649018206 scopus 로고    scopus 로고
    • Recurrent DNA copy number variation in the laboratory mouse
    • Egan, C.M., Sridhar, S., Wigler, M. & Hall, I.M. Recurrent DNA copy number variation in the laboratory mouse. Nat. Genet. 39, 1384-1389 (2007).
    • (2007) Nat. Genet , vol.39 , pp. 1384-1389
    • Egan, C.M.1    Sridhar, S.2    Wigler, M.3    Hall, I.M.4
  • 16
    • 38849101781 scopus 로고    scopus 로고
    • Significant gene content variation characterizes the genomes of inbred mouse strains
    • Cutler, G., Marshall, L.A., Chin, N., Baribault, H. & Kassner, P.D. Significant gene content variation characterizes the genomes of inbred mouse strains. Genome Res. 17, 1743-1754 (2007).
    • (2007) Genome Res , vol.17 , pp. 1743-1754
    • Cutler, G.1    Marshall, L.A.2    Chin, N.3    Baribault, H.4    Kassner, P.D.5
  • 17
    • 42649117472 scopus 로고    scopus 로고
    • Distribution and functional impact of DNA copy number variation in the rat
    • Guryev, V. et al. Distribution and functional impact of DNA copy number variation in the rat. Nat. Genet. 40, 538-545 (2008).
    • (2008) Nat. Genet , vol.40 , pp. 538-545
    • Guryev, V.1
  • 18
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Waterston, R.H. et al. Initial sequencing and comparative analysis of the mouse genome. Nature 420, 520-562 (2002).
    • (2002) Nature , vol.420 , pp. 520-562
    • Waterston, R.H.1
  • 19
    • 0033989159 scopus 로고    scopus 로고
    • Genealogies of mouse inbred strains
    • Beck, J.A. et al. Genealogies of mouse inbred strains. Nat. Genet. 24, 23-25 (2000).
    • (2000) Nat. Genet , vol.24 , pp. 23-25
    • Beck, J.A.1
  • 20
    • 34548295740 scopus 로고    scopus 로고
    • A sequence-based variation map of 8.27 million SNPs in inbred mouse strains
    • Frazer, K.A. et al. A sequence-based variation map of 8.27 million SNPs in inbred mouse strains. Nature 448, 1050-1053 (2007).
    • (2007) Nature , vol.448 , pp. 1050-1053
    • Frazer, K.A.1
  • 22
    • 46249114293 scopus 로고    scopus 로고
    • Mouse segmental duplication and copy number variation
    • She, X., Cheng, Z., Zollner, S., Church, D.M. & Eichler, E.E. Mouse segmental duplication and copy number variation. Nat. Genet. 40, 909-914 (2008).
    • (2008) Nat. Genet , vol.40 , pp. 909-914
    • She, X.1    Cheng, Z.2    Zollner, S.3    Church, D.M.4    Eichler, E.E.5
  • 23
    • 38049055222 scopus 로고    scopus 로고
    • Genomic copy number and expression variation within the C57BL/6J inbred mouse strain
    • Watkins-Chow, D.E. & Pavan, W.J. Genomic copy number and expression variation within the C57BL/6J inbred mouse strain. Genome Res. 18, 60-66 (2008).
    • (2008) Genome Res , vol.18 , pp. 60-66
    • Watkins-Chow, D.E.1    Pavan, W.J.2
  • 24
    • 32044441668 scopus 로고    scopus 로고
    • Spastic paraplegia type 2 associated with axonal neuropathy and apparent PLP1 position effect
    • Lee, J.A. et al. Spastic paraplegia type 2 associated with axonal neuropathy and apparent PLP1 position effect. Ann. Neurol. 59, 398-403 (2006).
    • (2006) Ann. Neurol , vol.59 , pp. 398-403
    • Lee, J.A.1
  • 25
    • 0037047439 scopus 로고    scopus 로고
    • Inappropriate gene activation in FSHD: A repressor complex binds a chromosomal repeat deleted in dystrophic muscle
    • Gabellini, D., Green, M.R. & Tupler, R. Inappropriate gene activation in FSHD: a repressor complex binds a chromosomal repeat deleted in dystrophic muscle. Cell 110, 339-348 (2002).
    • (2002) Cell , vol.110 , pp. 339-348
    • Gabellini, D.1    Green, M.R.2    Tupler, R.3
  • 26
    • 22144447840 scopus 로고    scopus 로고
    • Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees
    • Khaitovich, P. et al. Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees. Science 309, 1850-1854 (2005).
    • (2005) Science , vol.309 , pp. 1850-1854
    • Khaitovich, P.1
  • 27
    • 48249149836 scopus 로고    scopus 로고
    • Abnormal social behaviors and altered gene expression rates in a mouse model for Potocki-Lupski Syndrome
    • Molina, J. et al. Abnormal social behaviors and altered gene expression rates in a mouse model for Potocki-Lupski Syndrome. Hum. Mol. Genet. 17, 2486-2495 (2008).
    • (2008) Hum. Mol. Genet , vol.17 , pp. 2486-2495
    • Molina, J.1
  • 28
    • 20144386111 scopus 로고    scopus 로고
    • Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function
    • Chesler, E.J. et al. Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function. Nat. Genet. 37, 233-242 (2005).
    • (2005) Nat. Genet , vol.37 , pp. 233-242
    • Chesler, E.J.1
  • 29
    • 0031663782 scopus 로고    scopus 로고
    • Position effect in human genetic disease
    • Kleinjan, D.J. & van Heyningen, V. Position effect in human genetic disease. Hum. Mol. Genet. 7, 1611-1618 (1998).
    • (1998) Hum. Mol. Genet , vol.7 , pp. 1611-1618
    • Kleinjan, D.J.1    van Heyningen, V.2
  • 30
    • 11144339384 scopus 로고    scopus 로고
    • Long-range control of gene expression: Emerging mechanisms and disruption in disease
    • Kleinjan, D.A. & van Heyningen, V. Long-range control of gene expression: emerging mechanisms and disruption in disease. Am. J. Hum. Genet. 76, 8-32 (2005).
    • (2005) Am. J. Hum. Genet , vol.76 , pp. 8-32
    • Kleinjan, D.A.1    van Heyningen, V.2
  • 31
    • 33644522383 scopus 로고    scopus 로고
    • Facioscapulohumeral muscular dystrophy in mice overexpressing FRG1
    • Gabellini, D. et al. Facioscapulohumeral muscular dystrophy in mice overexpressing FRG1. Nature 439, 973-977 (2006).
    • (2006) Nature , vol.439 , pp. 973-977
    • Gabellini, D.1
  • 32
    • 28744446805 scopus 로고    scopus 로고
    • Position effect on PLP1 may cause a subset of Pelizaeus-Merzbacher disease symptoms
    • Muncke, N. et al. Position effect on PLP1 may cause a subset of Pelizaeus-Merzbacher disease symptoms. J. Med. Genet. 41, e121 (2004).
    • (2004) J. Med. Genet , vol.41
    • Muncke, N.1
  • 33
    • 34249307315 scopus 로고    scopus 로고
    • Nuclear organization of the genome and the potential for gene regulation
    • Fraser, P. & Bickmore, W. Nuclear organization of the genome and the potential for gene regulation. Nature 447, 413-417 (2007).
    • (2007) Nature , vol.447 , pp. 413-417
    • Fraser, P.1    Bickmore, W.2
  • 34
    • 34250159068 scopus 로고    scopus 로고
    • The ins and outs of gene regulation and chromosome territory organisation
    • Heard, E. & Bickmore, W. The ins and outs of gene regulation and chromosome territory organisation. Curr. Opin. Cell Biol. 19, 311-316 (2007).
    • (2007) Curr. Opin. Cell Biol , vol.19 , pp. 311-316
    • Heard, E.1    Bickmore, W.2
  • 35
    • 34250369629 scopus 로고    scopus 로고
    • Prominent use of distal 5 transcription start sites and discovery of a large number of additional exons in ENCODE regions
    • Denoeud, F. et al. Prominent use of distal 5 transcription start sites and discovery of a large number of additional exons in ENCODE regions. Genome Res. 17, 746-759 (2007).
    • (2007) Genome Res , vol.17 , pp. 746-759
    • Denoeud, F.1
  • 36
    • 38049150491 scopus 로고    scopus 로고
    • A portrait of copy-number polymorphism in Drosophila melanogaster
    • Dopman, E.B. & Hartl, D.L. A portrait of copy-number polymorphism in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 104, 19920-19925 (2007).
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 19920-19925
    • Dopman, E.B.1    Hartl, D.L.2


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