-
1
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel DP (2004) MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116(2):281-297.
-
(2004)
Cell
, vol.116
, Issue.2
, pp. 281-297
-
-
Bartel, D.P.1
-
2
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
Bartel DP (2009) MicroRNAs: Target recognition and regulatory functions. Cell 136(2):215-233.
-
(2009)
Cell
, vol.136
, Issue.2
, pp. 215-233
-
-
Bartel, D.P.1
-
3
-
-
84859632747
-
MiRNA-mediated gene silencing by translational repression followed by mRNA deadenylation and decay
-
Djuranovic S, Nahvi A, Green R (2012) miRNA-mediated gene silencing by translational repression followed by mRNA deadenylation and decay. Science 336(6078): 237-240.
-
(2012)
Science
, vol.336
, Issue.6078
, pp. 237-240
-
-
Djuranovic, S.1
Nahvi, A.2
Green, R.3
-
4
-
-
35348962568
-
Target-specific requirements for enhancers of decapping in miRNA-mediated gene silencing
-
Eulalio A, et al. (2007) Target-specific requirements for enhancers of decapping in miRNA-mediated gene silencing. Genes Dev 21(20):2558-2570.
-
(2007)
Genes Dev
, vol.21
, Issue.20
, pp. 2558-2570
-
-
Eulalio, A.1
-
5
-
-
33846045953
-
Principles of microRNA regulation of a human cellular signaling network
-
Cui Q, Yu Z, Purisima EO, Wang E (2006) Principles of microRNA regulation of a human cellular signaling network. Mol Syst Biol 2:46.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 46
-
-
Cui, Q.1
Yu, Z.2
Purisima, E.O.3
Wang, E.4
-
6
-
-
51749093103
-
Degradation of microRNAs by a family of exoribonucleases in Arabidopsis
-
Ramachandran V, Chen X (2008) Degradation of microRNAs by a family of exoribonucleases in Arabidopsis. Science 321(5895):1490-1492.
-
(2008)
Science
, vol.321
, Issue.5895
, pp. 1490-1492
-
-
Ramachandran, V.1
Chen, X.2
-
7
-
-
70349453924
-
Active turnover modulates mature microRNA activity in Caenorhabditis elegans
-
Chatterjee S, Grosshans H (2009) Active turnover modulates mature microRNA activity in Caenorhabditis elegans. Nature 461(7263):546-549.
-
(2009)
Nature
, vol.461
, Issue.7263
, pp. 546-549
-
-
Chatterjee, S.1
Grosshans, H.2
-
8
-
-
54449097149
-
A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence
-
Forman JJ, Legesse-Miller A, Coller HA (2008) A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence. Proc Natl Acad Sci USA 105(39):14879-14884.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.39
, pp. 14879-14884
-
-
Forman, J.J.1
Legesse-Miller, A.2
Coller, H.A.3
-
9
-
-
80053248649
-
Specific sequence determinants of miR-15/107 microRNA gene group targets
-
Nelson PT, et al. (2011) Specific sequence determinants of miR-15/107 microRNA gene group targets. Nucleic Acids Res 39(18):8163-8172.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.18
, pp. 8163-8172
-
-
Nelson, P.T.1
-
10
-
-
65949121645
-
New tricks for animal microRNAS: Targeting of amino acid coding regions at conserved and nonconserved sites
-
Rigoutsos I (2009) New tricks for animal microRNAS: Targeting of amino acid coding regions at conserved and nonconserved sites. Cancer Res 69(8):3245-3248.
-
(2009)
Cancer Res
, vol.69
, Issue.8
, pp. 3245-3248
-
-
Rigoutsos, I.1
-
11
-
-
79960489634
-
Unusually effective microRNA targeting within repeatrich coding regions of mammalian mRNAs
-
Schnall-Levin M, et al. (2011) Unusually effective microRNA targeting within repeatrich coding regions of mammalian mRNAs. Genome Res 21(9):1395-1403.
-
(2011)
Genome Res
, vol.21
, Issue.9
, pp. 1395-1403
-
-
Schnall-Levin, M.1
-
12
-
-
47049085267
-
MicroRNA-126 regulates HOXA9 by binding to the homeobox
-
Shen WF, Hu YL, Uttarwar L, Passegue E, Largman C (2008) MicroRNA-126 regulates HOXA9 by binding to the homeobox. Mol Cell Biol 28(14):4609-4619.
-
(2008)
Mol Cell Biol
, vol.28
, Issue.14
, pp. 4609-4619
-
-
Shen, W.F.1
Hu, Y.L.2
Uttarwar, L.3
Passegue, E.4
Largman, C.5
-
13
-
-
54549108798
-
MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation
-
Tay Y, Zhang J, Thomson AM, Lim B, Rigoutsos I (2008) MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation. Nature 455(7216): 1124-1128.
-
(2008)
Nature
, vol.455
, Issue.7216
, pp. 1124-1128
-
-
Tay, Y.1
Zhang, J.2
Thomson, A.M.3
Lim, B.4
Rigoutsos, I.5
-
14
-
-
84906849728
-
MiR-103a-3p targets the 5? UTR of GPRC5A in pancreatic cells
-
Zhou H, Rigoutsos I (2014) MiR-103a-3p targets the 5? UTR of GPRC5A in pancreatic cells. RNA 20(9):1431-1439.
-
(2014)
RNA
, vol.20
, Issue.9
, pp. 1431-1439
-
-
Zhou, H.1
Rigoutsos, I.2
-
15
-
-
76349122201
-
Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
-
Zisoulis DG, et al. (2010) Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans. Nat Struct Mol Biol 17(2):173-179.
-
(2010)
Nat Struct Mol Biol
, vol.17
, Issue.2
, pp. 173-179
-
-
Zisoulis, D.G.1
-
16
-
-
79551647673
-
Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs
-
Leung AK, et al. (2011) Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs. Nat Struct Mol Biol 18(2): 237-244.
-
(2011)
Nat Struct Mol Biol
, vol.18
, Issue.2
, pp. 237-244
-
-
Leung, A.K.1
-
17
-
-
80054715378
-
A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA
-
Cesana M, et al. (2011) A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA. Cell 147(2):358-369.
-
(2011)
Cell
, vol.147
, Issue.2
, pp. 358-369
-
-
Cesana, M.1
-
18
-
-
67749132423
-
Argonaute HITS-CLIP decodes microRNAmRNA interaction maps
-
Chi SW, Zang JB, Mele A, Darnell RB (2009) Argonaute HITS-CLIP decodes microRNAmRNA interaction maps. Nature 460(7254):479-486.
-
(2009)
Nature
, vol.460
, Issue.7254
, pp. 479-486
-
-
Chi, S.W.1
Zang, J.B.2
Mele, A.3
Darnell, R.B.4
-
19
-
-
38349064711
-
MicroRNA-134 modulates the differentiation of mouse embryonic stem cells, where it causes post-transcriptional attenuation of Nanog and LRH1
-
Tay YM, et al. (2008) MicroRNA-134 modulates the differentiation of mouse embryonic stem cells, where it causes post-transcriptional attenuation of Nanog and LRH1.Stem Cells 26(1):17-29.
-
(2008)
Stem Cells
, vol.26
, Issue.1
, pp. 17-29
-
-
Tay, Y.M.1
-
20
-
-
80054700538
-
Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs
-
Tay Y, et al. (2011) Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs. Cell 147(2):344-357.
-
(2011)
Cell
, vol.147
, Issue.2
, pp. 344-357
-
-
Tay, Y.1
-
21
-
-
73149098353
-
Alu-directed transcriptional regulation of some novel miRNAs
-
Gu TJ, Yi X, Zhao XW, Zhao Y, Yin JQ (2009) Alu-directed transcriptional regulation of some novel miRNAs. BMC Genomics 10:563.
-
(2009)
BMC Genomics
, vol.10
, pp. 563
-
-
Gu, T.J.1
Yi, X.2
Zhao, X.W.3
Zhao, Y.4
Yin, J.Q.5
-
22
-
-
84875372911
-
Natural RNA circles function as efficient microRNA sponges
-
Hansen TB, et al. (2013) Natural RNA circles function as efficient microRNA sponges. Nature 495(7441):384-388.
-
(2013)
Nature
, vol.495
, Issue.7441
, pp. 384-388
-
-
Hansen, T.B.1
-
23
-
-
84875369248
-
Circular RNAs are a large class of animal RNAs with regulatory potency
-
Memczak S, et al. (2013) Circular RNAs are a large class of animal RNAs with regulatory potency. Nature 495(7441):333-338.
-
(2013)
Nature
, vol.495
, Issue.7441
, pp. 333-338
-
-
Memczak, S.1
-
24
-
-
0037370020
-
A uniform system for microRNA annotation
-
Ambros V, et al. (2003) A uniform system for microRNA annotation. RNA 9(3): 277-279.
-
(2003)
RNA
, vol.9
, Issue.3
, pp. 277-279
-
-
Ambros, V.1
-
25
-
-
0038825783
-
Computational identification of Drosophila microRNA genes
-
Lai EC, Tomancak P, Williams RW, Rubin GM (2003) Computational identification of Drosophila microRNA genes. Genome Biol 4(7):R42.
-
(2003)
Genome Biol
, vol.4
, Issue.7
, pp. R42
-
-
Lai, E.C.1
Tomancak, P.2
Williams, R.W.3
Rubin, G.M.4
-
26
-
-
0037423845
-
Vertebrate microRNA genes
-
Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP (2003) Vertebrate microRNA genes. Science 299(5612):1540.
-
(2003)
Science
, vol.299
, Issue.5612
, pp. 1540
-
-
Lim, L.P.1
Glasner, M.E.2
Yekta, S.3
Burge, C.B.4
Bartel, D.P.5
-
27
-
-
37249025294
-
Systematic discovery and characterization of fly microRNAs using12 Drosophila genomes
-
Stark A, et al. (2007) Systematic discovery and characterization of fly microRNAs using12 Drosophila genomes. Genome Res 17(12):1865-1879.
-
(2007)
Genome Res
, vol.17
, Issue.12
, pp. 1865-1879
-
-
Stark, A.1
-
28
-
-
84865837750
-
Discovery of hundreds of mirtrons in mouse and human small RNA data
-
Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC (2012) Discovery of hundreds of mirtrons in mouse and human small RNA data. Genome Res 22(9):1634-1645.
-
(2012)
Genome Res
, vol.22
, Issue.9
, pp. 1634-1645
-
-
Ladewig, E.1
Okamura, K.2
Flynt, A.S.3
Westholm, J.O.4
Lai, E.C.5
-
29
-
-
33845436047
-
Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. Elegans
-
Ruby JG, et al. (2006) Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans. Cell 127(6):1193-1207.
-
(2006)
Cell
, vol.127
, Issue.6
, pp. 1193-1207
-
-
Ruby, J.G.1
-
30
-
-
33748587841
-
A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes
-
Miranda KC, et al. (2006) A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes. Cell 126(6):1203-1217.
-
(2006)
Cell
, vol.126
, Issue.6
, pp. 1203-1217
-
-
Miranda, K.C.1
-
31
-
-
0347755643
-
The microRNA Registry
-
Griffiths-Jones S (2004) The microRNA Registry. Nucleic Acids Res 32(Database issue): D109-D111.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.DATABASE ISSUE
, pp. D109-D111
-
-
Griffiths-Jones, S.1
-
32
-
-
38549150275
-
MiRBase: Tools for microRNA genomics
-
Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ (2008) miRBase: Tools for microRNA genomics. Nucleic Acids Res 36(Database issue):D154-D158.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.DATABASE ISSUE
, pp. D154-D158
-
-
Griffiths-Jones, S.1
Saini, H.K.2
Van Dongen, S.3
Enright, A.J.4
-
33
-
-
84899794728
-
Evidence for the biogenesis of more than 1,000 novel human microRNAs
-
Friedländer MR, et al. (2014) Evidence for the biogenesis of more than 1,000 novel human microRNAs. Genome Biol 15(4):R57.
-
(2014)
Genome Biol
, vol.15
, Issue.4
, pp. R57
-
-
Friedländer, M.R.1
-
34
-
-
78649743127
-
Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs
-
Hematologic Malignancies Research Consortium
-
Jima DD, et al.; Hematologic Malignancies Research Consortium (2010) Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. Blood 116(23):e118-e127.
-
(2010)
Blood
, vol.116
, Issue.23
, pp. e118-e127
-
-
Jima, D.D.1
-
35
-
-
80053159711
-
Deep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAome
-
Joyce CE, et al. (2011) Deep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAome. Hum Mol Genet 20(20):4025-4040.
-
(2011)
Hum Mol Genet
, vol.20
, Issue.20
, pp. 4025-4040
-
-
Joyce, C.E.1
-
36
-
-
78049446142
-
Discovery of microRNAs and other small RNAs in solid tumors
-
Meiri E, et al. (2010) Discovery of microRNAs and other small RNAs in solid tumors. Nucleic Acids Res 38(18):6234-6246.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.18
, pp. 6234-6246
-
-
Meiri, E.1
-
37
-
-
84870768077
-
The repertoire and features of human platelet microRNAs
-
Plé H, et al. (2012) The repertoire and features of human platelet microRNAs. PLoS ONE 7(12):e50746.
-
(2012)
PLoS ONE
, vol.7
, Issue.12
, pp. e50746
-
-
Plé, H.1
-
38
-
-
41849084855
-
Discovering microRNAs from deep sequencing data using miRDeep
-
Friedländer MR, et al. (2008) Discovering microRNAs from deep sequencing data using miRDeep. Nat Biotechnol 26(4):407-415.
-
(2008)
Nat Biotechnol
, vol.26
, Issue.4
, pp. 407-415
-
-
Friedländer, M.R.1
-
39
-
-
84855293838
-
MiRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
-
Friedländer MR, Mackowiak SD, Li N, Chen W, Rajewsky N (2012) miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic Acids Res 40(1):37-52.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.1
, pp. 37-52
-
-
Friedländer, M.R.1
Mackowiak, S.D.2
Li, N.3
Chen, W.4
Rajewsky, N.5
-
40
-
-
71549169628
-
Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs
-
Cole C, et al. (2009) Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. RNA 15(12):2147-2160.
-
(2009)
RNA
, vol.15
, Issue.12
, pp. 2147-2160
-
-
Cole, C.1
-
41
-
-
84870975709
-
Processing of snoRNAs as a new source of regulatory non-coding RNAs: SnoRNA fragments form a new class of functional RNAs
-
Falaleeva M, Stamm S (2013) Processing of snoRNAs as a new source of regulatory non-coding RNAs: snoRNA fragments form a new class of functional RNAs. BioEssays 35(1):46-54.
-
(2013)
BioEssays
, vol.35
, Issue.1
, pp. 46-54
-
-
Falaleeva, M.1
Stamm, S.2
-
42
-
-
72749089855
-
A novel class of small RNAs: TRNAderived RNA fragments (tRFs)
-
Lee YS, Shibata Y, Malhotra A, Dutta A (2009) A novel class of small RNAs: tRNAderived RNA fragments (tRFs). Genes Dev 23(22):2639-2649.
-
(2009)
Genes Dev
, vol.23
, Issue.22
, pp. 2639-2649
-
-
Lee, Y.S.1
Shibata, Y.2
Malhotra, A.3
Dutta, A.4
-
43
-
-
84872870536
-
TRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma
-
Maute RL, et al. (2013) tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma. Proc Natl Acad Sci USA 110(4):1404-1409.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.4
, pp. 1404-1409
-
-
Maute, R.L.1
-
44
-
-
84872183938
-
The complex transcriptional landscape of the anucleate human platelet
-
Bray PF, et al. (2013) The complex transcriptional landscape of the anucleate human platelet. BMC Genomics 14:1.
-
(2013)
BMC Genomics
, vol.14
, pp. 1
-
-
Bray, P.F.1
-
45
-
-
84894611782
-
The human platelet: Strong transcriptome correlations among individuals associate weakly with the platelet proteome
-
Londin ER, et al. (2014) The human platelet: Strong transcriptome correlations among individuals associate weakly with the platelet proteome. Biol Direct 9(1):3.
-
(2014)
Biol Direct
, vol.9
, Issue.1
, pp. 3
-
-
Londin, E.R.1
-
46
-
-
79959813870
-
A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins
-
Kishore S, et al. (2011) A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins. Nat Methods 8(7):559-564.
-
(2011)
Nat Methods
, vol.8
, Issue.7
, pp. 559-564
-
-
Kishore, S.1
-
47
-
-
84857430764
-
The viral and cellular microRNA targetome in lymphoblastoid cell lines
-
Skalsky RL, et al. (2012) The viral and cellular microRNA targetome in lymphoblastoid cell lines. PLoS Pathog 8(1):e1002484.
-
(2012)
PLoS Pathog
, vol.8
, Issue.1
, pp. e1002484
-
-
Skalsky, R.L.1
-
48
-
-
84892821162
-
Transcriptome-wide discovery of microRNA binding sites in human brain
-
Boudreau RL, et al. (2014) Transcriptome-wide discovery of microRNA binding sites in human brain. Neuron 81(2):294-305.
-
(2014)
Neuron
, vol.81
, Issue.2
, pp. 294-305
-
-
Boudreau, R.L.1
-
49
-
-
29144470346
-
Real-time quantification of microRNAs by stem-loop RT-PCR
-
Chen C, et al. (2005) Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res 33(20):e179.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.20
, pp. e179
-
-
Chen, C.1
-
50
-
-
84862831034
-
Strand-specific miR-28-5p and miR-28-3p have distinct effects in colorectal cancer cells
-
e9
-
Almeida MI, et al. (2012) Strand-specific miR-28-5p and miR-28-3p have distinct effects in colorectal cancer cells. Gastroenterology 142(4):886-896, e9.
-
(2012)
Gastroenterology
, vol.142
, Issue.4
, pp. 886-896
-
-
Almeida, M.I.1
-
51
-
-
84887605316
-
The miR-17/92 cluster: A comprehensive update on its genomics, genetics, functions and increasingly important and numerous roles in health and disease
-
Mogilyansky E, Rigoutsos I (2013) The miR-17/92 cluster: A comprehensive update on its genomics, genetics, functions and increasingly important and numerous roles in health and disease. Cell Death Differ 20(12):1603-1614.
-
(2013)
Cell Death Differ
, vol.20
, Issue.12
, pp. 1603-1614
-
-
Mogilyansky, E.1
Rigoutsos, I.2
-
52
-
-
84873707192
-
The microRNAs within the DLK1-DIO3 genomic region: Involvement in disease pathogenesis
-
Benetatos L, et al. (2013) The microRNAs within the DLK1-DIO3 genomic region: Involvement in disease pathogenesis. Cell Mol Life Sci 70(5):795-814.
-
(2013)
Cell Mol Life Sci
, vol.70
, Issue.5
, pp. 795-814
-
-
Benetatos, L.1
-
53
-
-
35348996554
-
Specialization and evolution of endogenous small RNA pathways
-
Chapman EJ, Carrington JC (2007) Specialization and evolution of endogenous small RNA pathways. Nat Rev Genet 8(11):884-896.
-
(2007)
Nat Rev Genet
, vol.8
, Issue.11
, pp. 884-896
-
-
Chapman, E.J.1
Carrington, J.C.2
-
54
-
-
84871974893
-
Birth and expression evolution of mammalian microRNA genes
-
Meunier J, et al. (2013) Birth and expression evolution of mammalian microRNA genes. Genome Res 23(1):34-45.
-
(2013)
Genome Res
, vol.23
, Issue.1
, pp. 34-45
-
-
Meunier, J.1
-
55
-
-
79953086307
-
Evolution and functional diversification of MIRNA genes
-
Cuperus JT, Fahlgren N, Carrington JC (2011) Evolution and functional diversification of MIRNA genes. Plant Cell 23(2):431-442.
-
(2011)
Plant Cell
, vol.23
, Issue.2
, pp. 431-442
-
-
Cuperus, J.T.1
Fahlgren, N.2
Carrington, J.C.3
-
56
-
-
81355123438
-
Evolution of microRNA diversity and regulation in animals
-
Berezikov E (2011) Evolution of microRNA diversity and regulation in animals. Nat Rev Genet 12(12):846-860.
-
(2011)
Nat Rev Genet
, vol.12
, Issue.12
, pp. 846-860
-
-
Berezikov, E.1
-
57
-
-
0033990061
-
Flexible sequence similarity searching with the FASTA3 program package
-
Pearson WR (2000) Flexible sequence similarity searching with the FASTA3 program package. Methods Mol Biol 132:185-219.
-
(2000)
Methods Mol Biol
, vol.132
, pp. 185-219
-
-
Pearson, W.R.1
-
58
-
-
84870829245
-
Interactive exploration of RNA22 microRNA target predictions
-
Loher P, Rigoutsos I (2012) Interactive exploration of RNA22 microRNA target predictions. Bioinformatics 28(24):3322-3323.
-
(2012)
Bioinformatics
, vol.28
, Issue.24
, pp. 3322-3323
-
-
Loher, P.1
Rigoutsos, I.2
-
59
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang W, Sherman BT, Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4(1):44-57.
-
(2009)
Nat Protoc
, vol.4
, Issue.1
, pp. 44-57
-
-
Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
60
-
-
58549112996
-
Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
-
Huang W, Sherman BT, Lempicki RA (2009) Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res 37(1):1-13.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.1
, pp. 1-13
-
-
Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
61
-
-
78651293534
-
MiRBase: Integrating microRNA annotation and deep-sequencing data
-
Kozomara A, Griffiths-Jones S (2011) miRBase: Integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 39(Database issue):D152-D157.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.DATABASE ISSUE
, pp. D152-D157
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
62
-
-
0347357618
-
A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans
-
Johnston RJ, Hobert O (2003) A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans. Nature 426(6968):845-849.
-
(2003)
Nature
, vol.426
, Issue.6968
, pp. 845-849
-
-
Johnston, R.J.1
Hobert, O.2
-
63
-
-
0034708122
-
The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
-
Reinhart BJ, et al. (2000) The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature 403(6772):901-906.
-
(2000)
Nature
, vol.403
, Issue.6772
, pp. 901-906
-
-
Reinhart, B.J.1
-
64
-
-
0033634943
-
The lin-41 RBCC gene acts in the C. Elegans heterochronicpathway between the let-7 regulatory RNA and the LIN-29 transcription factor
-
Slack FJ, et al. (2000) The lin-41 RBCC gene acts in the C. elegans heterochronicpathway between the let-7 regulatory RNA and the LIN-29 transcription factor. Mol Cell 5(4):659-669.
-
(2000)
Mol Cell
, vol.5
, Issue.4
, pp. 659-669
-
-
Slack, F.J.1
-
65
-
-
0038054470
-
Computational and experimental identification of C. Elegans microRNAs
-
Grad Y, et al. (2003) Computational and experimental identification of C. elegans microRNAs. Mol Cell 11(5):1253-1263.
-
(2003)
Mol Cell
, vol.11
, Issue.5
, pp. 1253-1263
-
-
Grad, Y.1
-
66
-
-
0037447334
-
The microRNAs of Caenorhabditis elegans
-
Lim LP, et al. (2003) The microRNAs of Caenorhabditis elegans. Genes Dev 17(8): 991-1008.
-
(2003)
Genes Dev
, vol.17
, Issue.8
, pp. 991-1008
-
-
Lim, L.P.1
-
67
-
-
52949091534
-
The let-7 family of microRNAs
-
Roush S, Slack FJ (2008) The let-7 family of microRNAs. Trends Cell Biol 18(10):505-516.
-
(2008)
Trends Cell Biol
, vol.18
, Issue.10
, pp. 505-516
-
-
Roush, S.1
Slack, F.J.2
-
68
-
-
84899151667
-
Imperfect centered miRNA binding sites are common and can mediate repression of target mRNAs
-
Martin HC, et al. (2014) Imperfect centered miRNA binding sites are common and can mediate repression of target mRNAs. Genome Biol 15(3):R51.
-
(2014)
Genome Biol
, vol.15
, Issue.3
, pp. R51
-
-
Martin, H.C.1
-
69
-
-
33846699083
-
A hexanucleotide element directs microRNA nuclear import
-
Hwang HW, Wentzel EA, Mendell JT (2007) A hexanucleotide element directs microRNA nuclear import. Science 315(5808):97-100.
-
(2007)
Science
, vol.315
, Issue.5808
, pp. 97-100
-
-
Hwang, H.W.1
Wentzel, E.A.2
Mendell, J.T.3
-
70
-
-
84906262205
-
Argonaute-dependent small RNAs derived from singlestranded, non-structured precursors
-
Chak LL, Okamura K (2014) Argonaute-dependent small RNAs derived from singlestranded, non-structured precursors. Front Genet 5:172.
-
(2014)
Front Genet
, vol.5
, pp. 172
-
-
Chak, L.L.1
Okamura, K.2
-
71
-
-
67049159825
-
SHRiMP: Accurate mapping of short color-space reads
-
Rumble SM, et al. (2009) SHRiMP: Accurate mapping of short color-space reads. PLOS Comput Biol 5(5):e1000386.
-
(2009)
PLOS Comput Biol
, vol.5
, Issue.5
, pp. e1000386
-
-
Rumble, S.M.1
-
72
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
Martin M (2011) Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet J 17(1):10-12.
-
(2011)
EMBnet J
, vol.17
, Issue.1
, pp. 10-12
-
-
Martin, M.1
-
73
-
-
84864643089
-
Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis
-
Vourekas A, et al. (2012) Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis. Nat Struct Mol Biol 19(8):773-781.
-
(2012)
Nat Struct Mol Biol
, vol.19
, Issue.8
, pp. 773-781
-
-
Vourekas, A.1
-
74
-
-
80055101895
-
PAR-CliP: A method to identify transcriptome-wide the binding sites of RNA binding proteins
-
Hafner M, et al. (2010) PAR-CliP: A method to identify transcriptome-wide the binding sites of RNA binding proteins. J Vis Exp 41:2034.
-
(2010)
J Vis Exp
, vol.41
, pp. 2034
-
-
Hafner, M.1
|