메뉴 건너뛰기




Volumn 10, Issue 1, 2010, Pages

Genomic organization of duplicated short wave-sensitive and long wave-sensitive opsin genes in the green swordtail, Xiphophorus helleri

Author keywords

[No Author keywords available]

Indexed keywords

COLOR MORPH; EVOLUTIONARY BIOLOGY; EYE; FRESHWATER ECOSYSTEM; GENE; GENE EXPRESSION; GENOMICS; MATE ATTRACTION; MATE CHOICE; PHYLOGENETICS; POLYMERASE CHAIN REACTION; REAL TIME; SEXUAL SELECTION; SPECIATION (BIOLOGY); TELEOST;

EID: 77950414161     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-10-87     Document Type: Article
Times cited : (32)

References (108)
  • 2
    • 33744945003 scopus 로고    scopus 로고
    • Sexual selection and mate choice
    • 10.1016/j.tree.2006.03.015. 16769428
    • Sexual selection and mate choice. M Andersson LW Simmons, Trends Ecol Evol 2006 21 296 302 10.1016/j.tree.2006.03.015 16769428
    • (2006) Trends Ecol Evol , vol.21 , pp. 296-302
    • Andersson, M.1    Simmons, L.W.2
  • 3
    • 33747502148 scopus 로고    scopus 로고
    • Dissecting the complex genetic basis of mate choice
    • 10.1038/nrg1924. 16921346
    • Dissecting the complex genetic basis of mate choice. SF Chenoweth MW Blows, Nat Rev Genet 2006 7 681 692 10.1038/nrg1924 16921346
    • (2006) Nat Rev Genet , vol.7 , pp. 681-692
    • Chenoweth, S.F.1    Blows, M.W.2
  • 5
    • 73949125564 scopus 로고    scopus 로고
    • Cichlid fish visual systems: Mechanisms of spectral tuning
    • Cichlid fish visual systems: mechanisms of spectral tuning. KL Carleton, Integr Zool 2009 4 74 86
    • (2009) Integr Zool , vol.4 , pp. 74-86
    • Carleton, K.L.1
  • 7
    • 34248182596 scopus 로고    scopus 로고
    • Long-wavelength sensitive visual pigments of the guppy (Poecilia reticulata): Six opsins expressed in a single individual
    • 10.1186/1471-2148-7-S1-S11. 17288569
    • Long-wavelength sensitive visual pigments of the guppy (Poecilia reticulata): six opsins expressed in a single individual. CJ Weadick BSW Chang, BMC Evol Biol 2007 7 Suppl 1 11 10.1186/1471-2148-7-S1-S11 17288569
    • (2007) BMC Evol Biol , vol.7 , Issue.SUPPL 1 , pp. 1911
    • Weadick, C.J.1    Chang, B.S.W.2
  • 8
    • 50849091595 scopus 로고    scopus 로고
    • The molecular basis of color vision in colorful fish: Four Long Wave-Sensitive (LWS) opsins in guppies (Poecilia reticulata) are defined by amino acid substitutions at key functional sites
    • 10.1186/1471-2148-8-210. 18638376
    • The molecular basis of color vision in colorful fish: Four Long Wave-Sensitive (LWS) opsins in guppies (Poecilia reticulata) are defined by amino acid substitutions at key functional sites. MN Ward AM Churcher KJ Dick CRJ Laver GL Owens MD Polack PR Ward F Breden JS Taylor, BMC Evol Biol 2008 8 210 10.1186/1471-2148-8-210 18638376
    • (2008) BMC Evol Biol , vol.8 , pp. 210
    • Ward, M.N.1    Churcher, A.M.2    Dick, K.J.3    Laver, C.R.J.4    Owens, G.L.5    Polack, M.D.6    Ward, P.R.7    Breden, F.8    Taylor, J.S.9
  • 9
    • 0034002482 scopus 로고    scopus 로고
    • Molecular evolution of vertebrate visual pigments
    • 10.1016/S1350-9462(00)00002-1. 10785616
    • Molecular Evolution of Vertebrate Visual Pigments. S Yokoyama, Prog Retin Eye Res 2000 19 385 419 10.1016/S1350-9462(00)00002-1 10785616
    • (2000) Prog Retin Eye Res , vol.19 , pp. 385-419
    • Yokoyama, S.1
  • 10
    • 51349093264 scopus 로고    scopus 로고
    • Evolution of vertebrate visual pigments
    • 10.1016/j.visres.2008.03.025. 18590925
    • Evolution of vertebrate visual pigments. JK Bowmaker, Vision Res 2008 48 2022 2041 10.1016/j.visres.2008.03.025 18590925
    • (2008) Vision Res , vol.48 , pp. 2022-2041
    • Bowmaker, J.K.1
  • 11
  • 12
    • 26244445167 scopus 로고    scopus 로고
    • Mix and match color vision: Tuning spectral sensitivity by differential opsin gene expression in Lake Malawi cichlids
    • 10.1016/j.cub.2005.08.010. 16213819
    • Mix and match color vision: tuning spectral sensitivity by differential opsin gene expression in Lake Malawi cichlids. JWL Parry KL Carleton T Spady A Carboo DM Hunt JK Bowmaker, Curr Biol 2005 15 1734 1739 10.1016/j.cub.2005.08. 010 16213819
    • (2005) Curr Biol , vol.15 , pp. 1734-1739
    • Parry, J.W.L.1    Carleton, K.L.2    Spady, T.3    Carboo, A.4    Hunt, D.M.5    Bowmaker, J.K.6
  • 14
    • 70350436461 scopus 로고    scopus 로고
    • Evolutionary replacement of UV vision by violet vision in fish
    • 10.1073/pnas.0903839106. 19805066
    • Evolutionary replacement of UV vision by violet vision in fish. T Tada A Altun S Yokoyama, Proc Natl Acad Sci USA 2009 106 17457 17462 10.1073/pnas.0903839106 19805066
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 17457-17462
    • Tada, T.1    Altun, A.2    Yokoyama, S.3
  • 15
    • 34250116272 scopus 로고
    • Female preference and sexual selection for male coloration in the guppy (Poecilia reticulata)
    • 10.1007/BF00300137
    • Female preference and sexual selection for male coloration in the guppy (Poecilia reticulata). A Kodric-Brown, Behav Ecol Sociobiol 1985 17 199 205 10.1007/BF00300137
    • (1985) Behav Ecol Sociobiol , vol.17 , pp. 199-205
    • Kodric-Brown, A.1
  • 16
    • 0027336229 scopus 로고
    • Positive genetic correlation between female preference and preferred male ornament in sticklebacks
    • DOI 10.1038/363255a0
    • Positive genetic correlation between female preference and preferred male ornament in sticklebacks. TCM Bakker, Nature 1993 363 255 257 10.1038/363255a0 (Pubitemid 23158527)
    • (1993) Nature , vol.363 , Issue.6426 , pp. 255-257
    • Bakker, T.C.M.1
  • 17
    • 0031969541 scopus 로고    scopus 로고
    • The effect of male coloration on female mate choice in closely related Lake Victoria cichlids (Haplochromis nyererei complex)
    • DOI 10.1007/s002650050405
    • The effect of male coloration on female mate choice in closely related Lake Victoria cichlids (Haplochromis nyererei complex). O Seehausen JJM van Alphen, Sociobiology 1998 42 1 8 10.1007/s002650050405 (Pubitemid 28189726)
    • (1998) Behavioral Ecology and Sociobiology , vol.42 , Issue.1 , pp. 1-8
    • Seehausen, O.1    Van Alphen, J.J.M.2
  • 18
    • 0033730150 scopus 로고    scopus 로고
    • Variation of female preference for male coloration in the eastern mosquitofish Gambusia holbrooki
    • 10.1023/A:1001914208075. 11105394
    • Variation of female preference for male coloration in the eastern mosquitofish Gambusia holbrooki. A Bisazza A Pilastro, Behav Genet 2000 30 207 10.1023/A:1001914208075 11105394
    • (2000) Behav Genet , vol.30 , pp. 207
    • Bisazza, A.1    Pilastro, A.2
  • 19
    • 0021084757 scopus 로고
    • Natural and sexual selection on color patterns in poeciliid fishes
    • 10.1007/BF00690861
    • Natural and sexual selection on color patterns in poeciliid fishes. JA Endler, Environ Biol Fishes 1983 9 173 190 10.1007/BF00690861
    • (1983) Environ Biol Fishes , vol.9 , pp. 173-190
    • Endler, J.A.1
  • 21
    • 0025683764 scopus 로고
    • Female preference for male sword length in the green swordtail, Xiphophorus helleri (Pisces: Poeciliidae)
    • 10.1016/S0003-3472(05)80928-5
    • Female preference for male sword length in the green swordtail, Xiphophorus helleri (Pisces: Poeciliidae). AL Basolo, Anim Behav 1990 40 332 338 10.1016/S0003-3472(05)80928-5
    • (1990) Anim Behav , vol.40 , pp. 332-338
    • Basolo, A.L.1
  • 22
    • 0036059361 scopus 로고    scopus 로고
    • Secondary reduction of preference for the sword ornament in the pygmy swordtail Xiphophorus nigrensis (Pisces: Poeciliidae)
    • 10.1006/anbe.2001.1887
    • Secondary reduction of preference for the sword ornament in the pygmy swordtail Xiphophorus nigrensis (Pisces: Poeciliidae). GG Rosenthal WE Wagner Jr MJ Ryan, Anim Behav 2002 63 37 45 10.1006/anbe.2001.1887
    • (2002) Anim Behav , vol.63 , pp. 37-45
    • Rosenthal, G.G.1    Wagner Jr., W.E.2    Ryan, M.J.3
  • 23
    • 29844434472 scopus 로고    scopus 로고
    • Female disdain for swords in a swordtail fish
    • 10.1086/498278. 16475105
    • Female disdain for swords in a swordtail fish. BBM Wong GG Rosenthal, Am Nat 2006 167 136 140 10.1086/498278 16475105
    • (2006) Am Nat , vol.167 , pp. 136-140
    • Wong, B.B.M.1    Rosenthal, G.G.2
  • 24
    • 0003035259 scopus 로고
    • Mate choice based upon naturally occurring color-pattern variation in a guppy population
    • 10.2307/2408968
    • Mate choice based upon naturally occurring color-pattern variation in a guppy population. AE Houde, Evolution 1987 41 1 10 10.2307/2408968
    • (1987) Evolution , vol.41 , pp. 1-10
    • Houde, A.E.1
  • 26
    • 0242416557 scopus 로고    scopus 로고
    • The role of sexual selection in maintaining a colour polymorphism in the pygmy swordtail, Xiphophorus pygmaeus
    • DOI 10.1006/anbe.2003.2110
    • The role of sexual selection in maintaining a colour polymorphism in the pygmy swordtail, Xiphophorus pygmaeus. JJ Kingston GG Rosenthal MJ Ryan, Anim Behav 2003 65 735 743 10.1006/anbe.2003.2110 (Pubitemid 36453592)
    • (2003) Animal Behaviour , vol.65 , Issue.4 , pp. 735-743
    • Kingston, J.I.1    Rosenthal, G.G.2    Ryan, M.J.3
  • 27
    • 0000788928 scopus 로고
    • Male predation risk determines female preference in the Trinidad guppy
    • 10.1038/329831a0
    • Male predation risk determines female preference in the Trinidad guppy. F Breden G Stoner, Nature 1987 329 831 833 10.1038/329831a0
    • (1987) Nature , vol.329 , pp. 831-833
    • Breden, F.1    Stoner, G.2
  • 28
    • 0025199545 scopus 로고
    • Correlated evolution of female mating preferences and male color patterns in the guppy Poecilia reticulata
    • 10.1126/science.248.4961.1405. 17747527
    • Correlated evolution of female mating preferences and male color patterns in the guppy Poecilia reticulata. AE Houde JA Endler, Science 1990 248 1405 1408 10.1126/science.248.4961.1405 17747527
    • (1990) Science , vol.248 , pp. 1405-1408
    • Houde, A.E.1    Endler, J.A.2
  • 29
    • 0028980357 scopus 로고
    • Geographic variation in female preferences for male traits in Poecilia reticulata
    • 10.2307/2410270
    • Geographic variation in female preferences for male traits in Poecilia reticulata. JA Endler AE Houde, Evolution 1995 49 456 468 10.2307/2410270
    • (1995) Evolution , vol.49 , pp. 456-468
    • Endler, J.A.1    Houde, A.E.2
  • 30
    • 0023635958 scopus 로고
    • Visual pigment polymorphism in the guppy, Poecilia reticulata
    • 10.1016/0042-6989(87)90200-8. 3424671
    • Visual pigment polymorphism in the guppy, Poecilia reticulata. SN Archer JA Endler JN Lythgoe JC Partridge, Vision Res 1987 27 1243 1252 10.1016/0042-6989(87)90200-8 3424671
    • (1987) Vision Res , vol.27 , pp. 1243-1252
    • Archer, S.N.1    Endler, J.A.2    Lythgoe, J.N.3    Partridge, J.C.4
  • 31
    • 0025139892 scopus 로고
    • The visual pigment basis for cone polymorphism in the guppy, Poecilia reticulata
    • 10.1016/0042-6989(90)90038-M. 2309457
    • The visual pigment basis for cone polymorphism in the guppy, Poecilia reticulata. SN Archer JN Lythgoe, Vision Res 1990 30 225 230 10.1016/0042-6989(90)90038-M 2309457
    • (1990) Vision Res , vol.30 , pp. 225-230
    • Archer, S.N.1    Lythgoe, J.N.2
  • 32
    • 0037296550 scopus 로고    scopus 로고
    • Gene duplication and spectral diversification of cone visual pigments of zebrafish
    • 12618404
    • Gene duplication and spectral diversification of cone visual pigments of zebrafish. A Chinen T Hamaoka Y Yamada S Kawamura, Genetics 2003 163 663 675 12618404
    • (2003) Genetics , vol.163 , pp. 663-675
    • Chinen, A.1    Hamaoka, T.2    Yamada, Y.3    Kawamura, S.4
  • 33
    • 33645788379 scopus 로고    scopus 로고
    • Functional characterization of visual opsin repertoire in Medaka (Oryzias latipes)
    • 10.1016/j.gene.2005.12.005. 16460888
    • Functional characterization of visual opsin repertoire in Medaka (Oryzias latipes). Y Matsumoto S Fukamachi H Mitani S Kawamura, Gene 2006 371 268 278 10.1016/j.gene.2005.12.005 16460888
    • (2006) Gene , vol.371 , pp. 268-278
    • Matsumoto, Y.1    Fukamachi, S.2    Mitani, H.3    Kawamura, S.4
  • 35
    • 0023764551 scopus 로고
    • Tandem array of human visual pigment genes at Xq28
    • 10.1126/science.2837827. 2837827
    • Tandem array of human visual pigment genes at Xq28. TD Vollrath J Nathans RW Davis, Science 1988 240 1669 1672 10.1126/science.2837827 2837827
    • (1988) Science , vol.240 , pp. 1669-1672
    • Vollrath, T.D.1    Nathans, J.2    Davis, R.W.3
  • 36
    • 0032766491 scopus 로고    scopus 로고
    • The evolution of trichromatic color vision by opsin gene duplication in New World and Old World primates
    • 10413401
    • The evolution of trichromatic color vision by opsin gene duplication in New World and Old World primates. KS Dulai M von Dornum JD Mollon DM Hunt, Genome Res 1999 9 629 638 10413401
    • (1999) Genome Res , vol.9 , pp. 629-638
    • Dulai, K.S.1    Von Dornum, M.2    Mollon, J.D.3    Hunt, D.M.4
  • 37
    • 33847294672 scopus 로고    scopus 로고
    • Visual pigments of the platypus: A novel route to mammalian colour vision
    • 10.1016/j.cub.2007.01.037. 17339011
    • Visual pigments of the platypus: A novel route to mammalian colour vision. WL Davies LS Carvalho JA Cowing LD Beazley DM Hunt CA Arrese, Curr Biol 2007 17 161 R163 10.1016/j.cub.2007.01.037 17339011
    • (2007) Curr Biol , vol.17
    • Davies, W.L.1    Carvalho, L.S.2    Cowing, J.A.3    Beazley, L.D.4    Hunt, D.M.5    Arrese, C.A.6
  • 40
    • 0026806222 scopus 로고
    • A locus control region adjacent to the human red and green visual pigment genes
    • 10.1016/0896-6273(92)90181-C. 1524826
    • A locus control region adjacent to the human red and green visual pigment genes. Y Wang JP Macke SL Merbs DJ Zack B Klaunberg J Bennett J Gearhart J Nathans, Neuron 1992 9 429 440 10.1016/0896-6273(92)90181-C 1524826
    • (1992) Neuron , vol.9 , pp. 429-440
    • Wang, Y.1    MacKe, J.P.2    Merbs, S.L.3    Zack, D.J.4    Klaunberg, B.5    Bennett, J.6    Gearhart, J.7    Nathans, J.8
  • 41
    • 0026686691 scopus 로고
    • Selective expression of human X-chromosome-linked green opsin genes
    • 10.1073/pnas.89.20.9710. 1409688
    • Selective expression of human X-chromosome-linked green opsin genes. J Winderickx L Battisti AG Motulsky SS Deeb, Proc Natl Acad Sci USA 1992 89 9710 9714 10.1073/pnas.89.20.9710 1409688
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 9710-9714
    • Winderickx, J.1    Battisti, L.2    Motulsky, A.G.3    Deeb, S.S.4
  • 42
    • 0037154161 scopus 로고    scopus 로고
    • Role of a locus control region in the mutually exclusive expression of human red and green cone pigment genes
    • 10.1073/pnas.022629799. 11773636
    • Role of a locus control region in the mutually exclusive expression of human red and green cone pigment genes. PM Smallwood Y Wang J Nathans, Proc Natl Acad Sci USA 2002 99 1008 1011 10.1073/pnas.022629799 11773636
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 1008-1011
    • Smallwood, P.M.1    Wang, Y.2    Nathans, J.3
  • 43
    • 33645866796 scopus 로고    scopus 로고
    • Genomic resources for Xiphophorus research
    • 10.1089/zeb.2006.3.11. 18248243
    • Genomic resources for Xiphophorus research. RB Walter Z Ju A Martinez C Amemiya PB Samollow, Zebrafish 2006 3 11 22 10.1089/zeb.2006.3.11 18248243
    • (2006) Zebrafish , vol.3 , pp. 11-22
    • Walter, R.B.1    Ju, Z.2    Martinez, A.3    Amemiya, C.4    Samollow, P.B.5
  • 44
    • 45449084443 scopus 로고    scopus 로고
    • Genomic organization and characterization of two vomeronasal 1 receptor-like genes (ora1 and ora2) in Atlantic salmon Salmo salar
    • DOI 10.1016/j.margen.2008.04.003, PII S1874778708000056
    • Genomic organization and characterization of two vomeronasal 1 receptor-like genes (ora1 and ora2) in Atlantic salmon Salmo salar. KA Johnstone KP Lubieniecki W Chow RB Phillips BF Koop WS Davidson, Mar Genomics 2008 1 23 31 10.1016/j.margen.2008.04.003 (Pubitemid 351852861)
    • (2008) Marine Genomics , vol.1 , Issue.1 , pp. 23-31
    • Johnstone, K.A.1    Lubieniecki, K.P.2    Chow, W.3    Phillips, R.B.4    Koop, B.F.5    Davidson, W.S.6
  • 46
    • 0031978181 scopus 로고    scopus 로고
    • Base calling of automated sequencer traces using phred. II. Error probabilities
    • 9521922
    • Base calling of automated sequencer traces using phred. II. Error probabilities. B Ewing P Green, Genome Res 1998 8 186 194 9521922
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 47
    • 0031955518 scopus 로고    scopus 로고
    • Base calling of automated sequencer traces using phred. I. Accuracy assessment
    • 9521921
    • Base calling of automated sequencer traces using phred. I. Accuracy assessment. B Ewing L Hillier M Wendl P Green, Genome Res 1998 8 175 185 9521921
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.3    Green, P.4
  • 48
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • 9521923
    • Consed: a graphical tool for sequence finishing. D Gordon C Abajian P Green, Genome Res 1998 8 195 202 9521923
    • (1998) Genome Res , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 50
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • 10.1093/nar/25.17.3389. 9254694
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. S Altschul T Madden A Schaffer J Zhang Z Zhang W Miller D Lipman, Nucleic Acids Res 1997 25 3389 3402 10.1093/nar/25.17.3389 9254694
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.1    Madden, T.2    Schaffer, A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.7
  • 51
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - The BLAST-like alignment tool
    • 11932250
    • BLAT - the BLAST-like alignment tool. W Kent, Genome Res 2002 12 656 664 11932250
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.1
  • 52
    • 0034764307 scopus 로고    scopus 로고
    • SSAHA: A fast search method for large DNA databases
    • 10.1101/gr.194201. 11591649
    • SSAHA: a fast search method for large DNA databases. Z Ning AJ Cox JC Mullikin, Genome Res 2001 11 1725 1729 10.1101/gr.194201 11591649
    • (2001) Genome Res , vol.11 , pp. 1725-1729
    • Ning, Z.1    Cox, A.J.2    Mullikin, J.C.3
  • 54
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • DOI 10.1006/jmbi.2000.4315
    • Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. A Krogh B Larsson G von Heijne EL Sonnhammer, Journal of Molecular Biology 2001 3 567 580 10.1006/jmbi.2000.4315 (Pubitemid 33032862)
    • (2001) Journal of Molecular Biology , vol.305 , Issue.3 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Von Heijne, G.3    Sonnhammer, E.L.L.4
  • 56
    • 33846057724 scopus 로고    scopus 로고
    • NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • 10.1093/nar/gkl842. 17130148
    • NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. K Pruitt T Tatusova D Maglott, Nucleic Acids Res 2007 35 61 65 10.1093/nar/gkl842 17130148
    • (2007) Nucleic Acids Res , vol.35 , pp. 461-65
    • Pruitt, K.1    Tatusova, T.2    Maglott, D.3
  • 57
    • 34347388470 scopus 로고    scopus 로고
    • UniRef: Comprehensive and non-redundant UniProt reference clusters
    • DOI 10.1093/bioinformatics/btm098
    • UniRef: comprehensive and non-redundant UniProt reference clusters. B Suzek H Huang P McGarvey R Mazumder C Wu, Bioinformatics (Oxford) 2007 23 1282 1288 10.1093/bioinformatics/btm098 (Pubitemid 47050545)
    • (2007) Bioinformatics , vol.23 , Issue.10 , pp. 1282-1288
    • Suzek, B.E.1    Huang, H.2    McGarvey, P.3    Mazumder, R.4    Wu, C.H.5
  • 59
    • 2642608655 scopus 로고    scopus 로고
    • The "five-sites" rule and the evolution of red and green color vision in mammals
    • 9580985
    • The "five-sites" rule and the evolution of red and green color vision in mammals. S Yokoyama FB Radlwimmer, Mol Biol Evol 1998 15 560 567 9580985
    • (1998) Mol Biol Evol , vol.15 , pp. 560-567
    • Yokoyama, S.1    Radlwimmer, F.B.2
  • 60
    • 0028279102 scopus 로고
    • A third, ultraviolet-sensitive, visual pigment in the Tokay Gecko (Gekko gecko)
    • 10.1016/0042-6989(94)90143-0. 8023453
    • A third, ultraviolet-sensitive, visual pigment in the Tokay Gecko (Gekko gecko). ER Loew, Vision Res 1994 34 1427 1431 10.1016/0042-6989(94)90143-0 8023453
    • (1994) Vision Res , vol.34 , pp. 1427-1431
    • Loew, E.R.1
  • 62
    • 0022451582 scopus 로고
    • A unifying presentation of photopigment spectra
    • 10.1016/0042-6989(86)90174-4. 3303673
    • A unifying presentation of photopigment spectra. EFJ MacNichol, Vision Res 1986 26 1543 1556 10.1016/0042-6989(86)90174-4 3303673
    • (1986) Vision Res , vol.26 , pp. 1543-1556
    • MacNichol, E.F.J.1
  • 63
    • 0023812745 scopus 로고
    • Application of an invariant spectral form to the visual pigments of crustaceans: Implications regarding the binding of the chromophore
    • 10.1016/0042-6989(88)90135-6. 3257012
    • Application of an invariant spectral form to the visual pigments of crustaceans: Implications regarding the binding of the chromophore. LE Lipitz TW Cronin, Vision Res 1988 28 1083 1093 10.1016/0042-6989(88)90135-6 3257012
    • (1988) Vision Res , vol.28 , pp. 1083-1093
    • Lipitz, L.E.1    Cronin, T.W.2
  • 64
    • 0027968068 scopus 로고
    • Clustal-W-Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 10.1093/nar/22.22.4673. 7984417
    • Clustal-W-Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. JD Thompson DG Higgins TJ Gibson, Nucleic Acids Res 1994 22 4673 4680 10.1093/nar/22.22.4673 7984417
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 65
    • 77951203911 scopus 로고    scopus 로고
    • eBioX1.5.1. http://www.ebioinformatics.org
    • EBioX1.5.1
  • 67
    • 58049218990 scopus 로고    scopus 로고
    • TOPALi v2: A rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops
    • 10.1093/bioinformatics/btn575
    • TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. I Milne D Lindner M Bayer D Husmeier G McGuire DF Marshall F Wright, Bioinformatics (Oxford) 2009 25 126 127 10.1093/bioinformatics/btn575
    • (2009) Bioinformatics (Oxford) , vol.25 , pp. 126-127
    • Milne, I.1    Lindner, D.2    Bayer, M.3    Husmeier, D.4    McGuire, G.5    Marshall, D.F.6    Wright, F.7
  • 70
    • 0028785863 scopus 로고
    • Widely spaced, directly repeated PuGGTCA elements act as promiscuous enhancers for different classes of nuclear receptors
    • 7565738
    • Widely spaced, directly repeated PuGGTCA elements act as promiscuous enhancers for different classes of nuclear receptors. S Kato H Sasaki M Suzawa S Masushige L Tora P Chambon H Gronemeyer, Molecular and Cellular Biology 1995 15 5858 5867 7565738
    • (1995) Molecular and Cellular Biology , vol.15 , pp. 5858-5867
    • Kato, S.1    Sasaki, H.2    Suzawa, M.3    Masushige, S.4    Tora, L.5    Chambon, P.6    Gronemeyer, H.7
  • 71
    • 0030781996 scopus 로고    scopus 로고
    • Crx, a novel Otx-like paired-homeodomain protein, binds to and transactivates photoreceptor cell-specific genes
    • 10.1016/S0896-6273(00)80394-3. 9390516
    • Crx, a novel Otx-like paired-homeodomain protein, binds to and transactivates photoreceptor cell-specific genes. SM Chen QL Wang ZQ Nie H Sun G Lennon NG Copeland DJ Gilbert NA Jenkins DJ Zack, Neuron 1997 19 1017 1030 10.1016/S0896-6273(00)80394-3 9390516
    • (1997) Neuron , vol.19 , pp. 1017-1030
    • Chen, S.M.1    Wang, Q.L.2    Nie, Z.Q.3    Sun, H.4    Lennon, G.5    Copeland, N.G.6    Gilbert, D.J.7    Jenkins, N.A.8    Zack, D.J.9
  • 72
    • 0030725687 scopus 로고    scopus 로고
    • Crx, a novel otx-like homeobox gene, shows photoreceptor-specific expression and regulates photoreceptor differentiation
    • 10.1016/S0092-8674(00)80439-0. 9390562
    • Crx, a novel otx-like homeobox gene, shows photoreceptor-specific expression and regulates photoreceptor differentiation. T Furukawa EM Morrow CL Cepko, Cell 1997 91 531 541 10.1016/S0092-8674(00)80439-0 9390562
    • (1997) Cell , vol.91 , pp. 531-541
    • Furukawa, T.1    Morrow, E.M.2    Cepko, C.L.3
  • 73
    • 57749177443 scopus 로고    scopus 로고
    • RNA-based gene duplication: Mechanistic and evolutionary insights
    • 10.1038/nrg2487
    • RNA-based gene duplication: mechanistic and evolutionary insights. H Kaessmann N Vinckenbosch M Long, Nat Rev Genet 2008 10 19 31 10.1038/nrg2487
    • (2008) Nat Rev Genet , vol.10 , pp. 19-31
    • Kaessmann, H.1    Vinckenbosch, N.2    Long, M.3
  • 74
    • 77049119298 scopus 로고    scopus 로고
    • The opsin repertoire of Jenynsia onca : AA new perspective on gene duplication and divergence in livebearers
    • 10.1186/1756-0500-2-159. 19656397
    • The opsin repertoire of Jenynsia onca : a new perspective on gene duplication and divergence in livebearers. DJ Windsor GL Owens, BMC Research Notes 2009 2 159 10.1186/1756-0500-2-159 19656397
    • (2009) BMC Research Notes , vol.2 , pp. 159
    • Windsor, D.J.1    Owens, G.L.2
  • 75
    • 67650270666 scopus 로고    scopus 로고
    • A fish eye out of water: Ten visual opsins in the four-eyed fish, Anableps anableps
    • 10.1371/journal.pone.0005970. 19551143
    • A fish eye out of water: Ten visual opsins in the four-eyed fish, Anableps anableps. GL Owens DJ Windsor J Mui JS Taylor, PLoS One 2009 4 5970 10.1371/journal.pone.0005970 19551143
    • (2009) PLoS One , vol.4 , pp. 55970
    • Owens, G.L.1    Windsor, D.J.2    Mui, J.3    Taylor, J.S.4
  • 76
    • 33644777605 scopus 로고    scopus 로고
    • Evolutionary fate of retroposed gene copies in the human genome
    • 10.1073/pnas.0511307103. 16492757
    • Evolutionary fate of retroposed gene copies in the human genome. N Vinckenbosch I Dupanloup H Kaessmann, Proc Natl Acad Sci USA 2006 103 3220 3225 10.1073/pnas.0511307103 16492757
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 3220-3225
    • Vinckenbosch, N.1    Dupanloup, I.2    Kaessmann, H.3
  • 77
    • 56449118064 scopus 로고    scopus 로고
    • Retrocopy contributions to the evolution of the human genome
    • 10.1186/1471-2164-9-466. 18842134
    • Retrocopy contributions to the evolution of the human genome. R Baertsch M Diekhans WJ Kent D Haussler J Brosius, BMC Genomics 2008 9 466 10.1186/1471-2164-9-466 18842134
    • (2008) BMC Genomics , vol.9 , pp. 466
    • Baertsch, R.1    Diekhans, M.2    Kent, W.J.3    Haussler, D.4    Brosius, J.5
  • 78
    • 68949199595 scopus 로고    scopus 로고
    • Evolutionary origin and functions of retrogene introns
    • 10.1093/molbev/msp125. 19553367
    • Evolutionary origin and functions of retrogene introns. M Fablet M Bueno L Potrzebowski H Kaessmann, Mol Biol Evol 2009 26 2147 2156 10.1093/molbev/ msp125 19553367
    • (2009) Mol Biol Evol , vol.26 , pp. 2147-2156
    • Fablet, M.1    Bueno, M.2    Potrzebowski, L.3    Kaessmann, H.4
  • 79
    • 0026780339 scopus 로고
    • Structure and function in rhodopsin. Studies of the interaction between the rhodopsin cytoplasmic domain and transducin
    • 1634520
    • Structure and function in rhodopsin. Studies of the interaction between the rhodopsin cytoplasmic domain and transducin. RR Franke TP Sakmar RM Graham HG Khorana, Journal of Biological Chemistry 1992 267 14767 14774 1634520
    • (1992) Journal of Biological Chemistry , vol.267 , pp. 14767-14774
    • Franke, R.R.1    Sakmar, T.P.2    Graham, R.M.3    Khorana, H.G.4
  • 81
    • 14744304174 scopus 로고    scopus 로고
    • Putative ultraviolet-photosensitivity in the retina of 1-year-old nibbler Girella punctata: Based on molecular and histological evidences
    • DOI 10.1111/j.1444-2906.2005.00943.x
    • Putative ultraviolet-photosensitivity in the retina of 1-year-old nibbler Girella punctata : Based on molecular and histological evidences. T Miyazaki M Yamauchi M Takami J Kohbara, Fish Sci 2005 71 159 167 10.1111/j.1444-2906.2005. 00943.x (Pubitemid 40328535)
    • (2005) Fisheries Science , vol.71 , Issue.1 , pp. 159-167
    • Miyazaki, T.1    Yamauchi, M.2    Takami, M.3    Kohbara, J.4
  • 82
    • 33644872116 scopus 로고    scopus 로고
    • Convergent loss of an anciently duplicated, functionally divergent RH2 opsin gene in the fugu and Tetraodon pufferfish lineages
    • DOI 10.1016/j.gene.2006.01.002, PII S037811190600045X
    • Convergent loss of an anciently duplicated, functionally divergent RH2 opsin gene in the fugu and Tetraodon pufferfish lineages. DE Neafsey DL Hartl, Gene 2006 370 125 125 10.1016/j.gene.2006.01.002 (Pubitemid 43375908)
    • (2006) Gene , vol.370 , Issue.1-2 , pp. 125
    • Neafsey, D.E.1    Hartl, D.L.2
  • 83
    • 33748072399 scopus 로고    scopus 로고
    • Evolution of the cichlid visual palette through ontogenetic subfunctionalization of the opsin gene arrays
    • 10.1093/molbev/msl014. 16720697
    • Evolution of the cichlid visual palette through ontogenetic subfunctionalization of the opsin gene arrays. TC Spady JW Parry PR Robinson DM Hunt JK Bowmaker KL Carleton, Mol Biol Evol 2006 23 1538 1547 10.1093/molbev/msl014 16720697
    • (2006) Mol Biol Evol , vol.23 , pp. 1538-1547
    • Spady, T.C.1    Parry, J.W.2    Robinson, P.R.3    Hunt, D.M.4    Bowmaker, J.K.5    Carleton, K.L.6
  • 84
    • 0032752715 scopus 로고    scopus 로고
    • Genetic analyses of visual pigments of the pigeon (Columba livia)
    • 10581289
    • Genetic analyses of visual pigments of the pigeon (Columba livia). S Kawamura NS Blow S Yokoyama, Genetics 1999 153 1839 1850 10581289
    • (1999) Genetics , vol.153 , pp. 1839-1850
    • Kawamura, S.1    Blow, N.S.2    Yokoyama, S.3
  • 86
    • 0034089338 scopus 로고    scopus 로고
    • Phylogenetic analysis and experimental approaches to study color vision in vertebrates
    • full-text. 10736710
    • Phylogenetic analysis and experimental approaches to study color vision in vertebrates. S Yokoyama, Methods Enzymol 2000 315 312 325 full-text 10736710
    • (2000) Methods Enzymol , vol.315 , pp. 312-325
    • Yokoyama, S.1
  • 87
    • 33748562846 scopus 로고    scopus 로고
    • Spectral sensitivity of mollies: Comparing surface- and cave-dwelling Atlantic mollies, Poecilia mexicana
    • DOI 10.1111/j.1095-8649.2006.01056.x
    • Spectral sensitivity of mollies: comparing surface- and cave-dwelling Atlantic mollies, Poecilia mexicana. KE Körner I Schlupp M Plath ER Loew, J Fish Biol 2006 69 54 65 10.1111/j.1095-8649.2006.01056.x (Pubitemid 44365985)
    • (2006) Journal of Fish Biology , vol.69 , Issue.1 , pp. 54-65
    • Korner, K.E.1    Schlupp, I.2    Plath, M.3    Loew, E.R.4
  • 88
    • 0025729153 scopus 로고
    • Spectral tuning of pigments underlying red-green color vision
    • 10.1126/science.1903559. 1903559
    • Spectral tuning of pigments underlying red-green color vision. M Neitz J Neitz GH Jacobs, Science 1991 252 971 974 10.1126/science.1903559 1903559
    • (1991) Science , vol.252 , pp. 971-974
    • Neitz, M.1    Neitz, J.2    Jacobs, G.H.3
  • 89
    • 0026352455 scopus 로고
    • Design, chemical synthesis, and expression of genes for the three human color vision pigments
    • 10.1021/bi00112a002. 1742276
    • Design, chemical synthesis, and expression of genes for the three human color vision pigments. DD Oprian AB Asenjo N Lee SL Pelletier, Biochemistry 1991 30 11367 11372 10.1021/bi00112a002 1742276
    • (1991) Biochemistry , vol.30 , pp. 11367-11372
    • Oprian, D.D.1    Asenjo, A.B.2    Lee, N.3    Pelletier, S.L.4
  • 90
    • 0034857787 scopus 로고    scopus 로고
    • The molecular genetics and evolution of red and green color vision in vertebrates
    • The molecular genetics and evolution of red and green color vision in vertebrates. S Yokoyama FB Radlwimmer, Genetics 2001 158 1697 1710 11545071 (Pubitemid 32783150)
    • (2001) Genetics , vol.158 , Issue.4 , pp. 1697-1710
    • Yokoyama, S.1    Radlwimmer, F.B.2
  • 91
    • 34249280953 scopus 로고    scopus 로고
    • A novel spectral tuning in the short wavelength-sensitive (SWS1 and SWS2) pigments of bluefin killifish (Lucania goodei)
    • 10.1016/j.gene.2007.03.019. 17498892
    • A novel spectral tuning in the short wavelength-sensitive (SWS1 and SWS2) pigments of bluefin killifish (Lucania goodei). S Yokoyama N Takenaka NS Blow, Gene 2007 396 196 202 10.1016/j.gene.2007.03.019 17498892
    • (2007) Gene , vol.396 , pp. 196-202
    • Yokoyama, S.1    Takenaka, N.2    Blow, N.S.3
  • 92
    • 0035410966 scopus 로고    scopus 로고
    • Neurochemical anatomy of the zebrafish retina as determined by immunocytochemistry
    • DOI 10.1023/A:1016512617484
    • Neurochemical anatomy of the zebrafish retina as determined by immunocytochemistry. S Yazulla KM Studholme, Jour Neurocytol 2001 30 551 592 10.1023/A:1016512617484 (Pubitemid 34969942)
    • (2001) Journal of Neurocytology , vol.30 , Issue.7 , pp. 551-592
    • Yazulla, S.1    Studholme, K.M.2
  • 93
  • 94
    • 0030047457 scopus 로고    scopus 로고
    • RER, an evolutionarily conserved sequence upstream of the rhodopsin gene, has enhancer activity
    • 10.1074/jbc.271.5.2667. 8576239
    • RER, an evolutionarily conserved sequence upstream of the rhodopsin gene, has enhancer activity. Z Nie S Chen S Kumar DJ Zack, Journal of Biological Chemistry 1996 271 2667 2675 10.1074/jbc.271.5.2667 8576239
    • (1996) Journal of Biological Chemistry , vol.271 , pp. 2667-2675
    • Nie, Z.1    Chen, S.2    Kumar, S.3    Zack, D.J.4
  • 95
    • 34547918335 scopus 로고    scopus 로고
    • Identification of a locus control region for quadruplicated green-sensitive opsin genes in zebrafish
    • 10.1073/pnas.0704061104. 17646658
    • Identification of a locus control region for quadruplicated green-sensitive opsin genes in zebrafish. T Tsujimura A Chinen S Kawamura, Proc Natl Acad Sci USA 2007 104 12813 12818 10.1073/pnas.0704061104 17646658
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 12813-12818
    • Tsujimura, T.1    Chinen, A.2    Kawamura, S.3
  • 96
    • 57649130596 scopus 로고    scopus 로고
    • Identification of cis-acting elements repressing blue opsin expression in zebrafish UV cones and pineal cells
    • 10.1074/jbc.M806226200. 18796431
    • Identification of cis-acting elements repressing blue opsin expression in zebrafish UV cones and pineal cells. M Takechi S Seno S Kawamura, Journal of Biological Chemistry 2008 283 31625 31632 10.1074/jbc.M806226200 18796431
    • (2008) Journal of Biological Chemistry , vol.283 , pp. 31625-31632
    • Takechi, M.1    Seno, S.2    Kawamura, S.3
  • 97
    • 0034957480 scopus 로고    scopus 로고
    • Nuclear hormone receptors and gene expression
    • 11427696
    • Nuclear hormone receptors and gene expression. A Aranda A Pascual, Physiol Rev 2001 81 1269 1304 11427696
    • (2001) Physiol Rev , vol.81 , pp. 1269-1304
    • Aranda, A.1    Pascual, A.2
  • 99
    • 0036847475 scopus 로고    scopus 로고
    • Distinct functions of photoreceptor cell-specific nuclear receptor, thyroid hormone receptor 2 and CRX in cone photoreceptor development
    • 12407160
    • Distinct functions of photoreceptor cell-specific nuclear receptor, thyroid hormone receptor 2 and CRX in cone photoreceptor development. Y Yanagi S Takezawa S Kato, Invest Ophthalmol Vis Sci 2002 43 3489 3494 12407160
    • (2002) Invest Ophthalmol Vis Sci , vol.43 , pp. 3489-3494
    • Yanagi, Y.1    Takezawa, S.2    Kato, S.3
  • 100
    • 24644470128 scopus 로고    scopus 로고
    • Retinoid X Receptor is necessary to establish the S-opsin gradient in cone photoreceptors of the developing mouse retina
    • 10.1167/iovs.05-0093. 16043864
    • Retinoid X Receptor is necessary to establish the S-opsin gradient in cone photoreceptors of the developing mouse retina. MR Roberts A Hendrickson CR McGuire TA Reh, Invest Ophthalmol Vis Sci 2005 46 2897 2904 10.1167/iovs.05-0093 16043864
    • (2005) Invest Ophthalmol Vis Sci , vol.46 , pp. 2897-2904
    • Roberts, M.R.1    Hendrickson, A.2    McGuire, C.R.3    Reh, T.A.4
  • 101
    • 33646583234 scopus 로고    scopus 로고
    • Making the gradient: Thyroid hormone regulates cone opsin expression in the developing mouse retina
    • 10.1073/pnas.0509981103. 16606843
    • Making the gradient: Thyroid hormone regulates cone opsin expression in the developing mouse retina. MR Roberts M Srinivas D Forrest G Morreale de Escobar TA Reh, Proc Natl Acad Sci USA 2006 103 6218 6223 10.1073/pnas. 0509981103 16606843
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 6218-6223
    • Roberts, M.R.1    Srinivas, M.2    Forrest, D.3    Morreale De Escobar, G.4    Reh, T.A.5
  • 102
    • 66849099169 scopus 로고    scopus 로고
    • Thyroid hormone induces a time-dependent opsin switch in the retina of salmonid fishes
    • 10.1167/iovs.08-2713. 19218617
    • Thyroid hormone induces a time-dependent opsin switch in the retina of salmonid fishes. CL Cheng KJ Gan IN Flamarique, Invest Ophthalmol Vis Sci 2009 50 3024 3032 10.1167/iovs.08-2713 19218617
    • (2009) Invest Ophthalmol Vis Sci , vol.50 , pp. 3024-3032
    • Cheng, C.L.1    Gan, K.J.2    Flamarique, I.N.3
  • 103
    • 15544377813 scopus 로고    scopus 로고
    • Genome evolution and biodiversity in teleostfish
    • 10.1038/sj.hdy.6800635. 15674378
    • Genome evolution and biodiversity in teleostfish. J-N Volff, Heredity 2005 94 280 294 10.1038/sj.hdy.6800635 15674378
    • (2005) Heredity , vol.94 , pp. 280-294
    • Volff, J.-N.1
  • 104
    • 0032749223 scopus 로고    scopus 로고
    • Retinopathy and attenuated circadian entrainment in Crx-deficient mice
    • 10.1038/70591. 10581037
    • Retinopathy and attenuated circadian entrainment in Crx-deficient mice. T Furukawa EM Morrow T Li FC Davis CL Cepko, Nat Genet 1999 23 466 470 10.1038/70591 10581037
    • (1999) Nat Genet , vol.23 , pp. 466-470
    • Furukawa, T.1    Morrow, E.M.2    Li, T.3    Davis, F.C.4    Cepko, C.L.5
  • 105
    • 33750126137 scopus 로고    scopus 로고
    • Topography of long- and middle-wavelength sensitive cone opsin gene expression in human and Old World monkey retina
    • 10.1017/S095252380623325X. 16961970
    • Topography of long- and middle-wavelength sensitive cone opsin gene expression in human and Old World monkey retina. M Neitz SD Balding C McMahon SA Sjoberg J Neitz, Vis Neurosci 2006 23 379 385 10.1017/S095252380623325X 16961970
    • (2006) Vis Neurosci , vol.23 , pp. 379-385
    • Neitz, M.1    Balding, S.D.2    McMahon, C.3    Sjoberg, S.A.4    Neitz, J.5
  • 106
    • 39749149729 scopus 로고    scopus 로고
    • The L:M cone ratio in males of African descent with normal color vision
    • 10.1167/8.2.5
    • The L:M cone ratio in males of African descent with normal color vision. C McMahon J Carroll S Awua J Neitz M Neitz, J Vision 2008 8 1 9 10.1167/8.2.5
    • (2008) J Vision , vol.8 , pp. 1-9
    • McMahon, C.1    Carroll, J.2    Awua, S.3    Neitz, J.4    Neitz, M.5
  • 107
    • 46749092562 scopus 로고    scopus 로고
    • Nucleotide polymorphisms upstream of the X-chromosome opsin gene array tune L:M cone ratio
    • 10.1017/S0952523808080280. 18598397
    • Nucleotide polymorphisms upstream of the X-chromosome opsin gene array tune L:M cone ratio. KL Gunther J Neitz M Neitz, Vis Neurosci 2008 25 265 271 10.1017/S0952523808080280 18598397
    • (2008) Vis Neurosci , vol.25 , pp. 265-271
    • Gunther, K.L.1    Neitz, J.2    Neitz, M.3
  • 108
    • 17644392833 scopus 로고    scopus 로고
    • Temporal and spatial changes in the expression pattern of multiple red and green subtype opsin genes during zebrafish development
    • 10.1242/jeb.01532. 15781894
    • Temporal and spatial changes in the expression pattern of multiple red and green subtype opsin genes during zebrafish development. M Takechi S Kawamura, Journal of Experimental Biology 2005 208 1337 1345 10.1242/jeb.01532 15781894
    • (2005) Journal of Experimental Biology , vol.208 , pp. 1337-1345
    • Takechi, M.1    Kawamura, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.