Genomic instability within centromeres of interspecific marsupial hybrids

Genetics

Volumn 177, Issue 4, 2007, Pages 2507-2517

  Metcalfe, Cushla J ^a,e   Bulazel, Kira V ^a   Ferreri, Gianni C ^a   Schroeder Reiter, Elizabeth ^c   Wanner, Gerhard ^c   Rens, Willem ^b   Obergfell, Craig ^a   Eldridge, Mark D B ^d   O'Neill, Rachel J ^a  

^a UNIVERSITY OF CONNECTICUT   (United States)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^c UNIVERSITY OF MUNICH   (Germany)

^d AUSTRALIAN MUSEUM   (Australia)

^e CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

SATELLITE DNA;

ANIMAL CELL; ARTICLE; CENTROMERE; CHROMATIN STRUCTURE; CHROMOSOMAL INSTABILITY; CHROMOSOME PAINTING; CHROMOSOME REARRANGEMENT; CONTROLLED STUDY; DNA PROBE; FEMALE; GENOMIC INSTABILITY; HETEROCHROMATIN; HYBRID; MALE; MARSUPIAL; NONHUMAN; PRIORITY JOURNAL; SCANNING ELECTRON MICROSCOPY; STAINING; TRANSPOSON;

ANIMALS; CENTROMERE; CHIMERA; CHROMATIN ASSEMBLY AND DISASSEMBLY; DNA TRANSPOSABLE ELEMENTS; GENE REARRANGEMENT; GENOMIC INSTABILITY; KARYOTYPING; MARSUPIALIA; SPECIES SPECIFICITY;

BETTONGIA; MACROPODIDAE; MACROPUS AGILIS; MACROPUS RUFOGRISEUS; METATHERIA; POTOROUS;

EID: 37249013294     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.107.082313     Document Type: Article

References (63)

1. ANANIEV, E. V., R. L. PHILLIPS and H. W. RINES, 1998 A knob-associated tandem repeat in maize capable of forming fold-back DNA segments: Are chromosome knobs megatransposons? Proc. Natl. Acad. Sci. USA 95: 10785-10790.
2. BOUZINBA-SEGARD, H., A. GUAIS and C. FRANCASTEL, 2006 Accumulation of small murine minor satellite transcripts leads to impaired centromeric architecture and function. Proc. Natl. Acad. Sci. USA 103: 8709-8714.
3. BRENNECKE, J., A. A. ARAVIN, A. STARK, M. DUS, M. KELLIS et al., 2007 Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 128: 1089-1103.
4. BULAZEL, K., C. METCALFE, G. FERRERI, J. YU, M. ELDRIDGE et al., 2006 Cytogenetic and molecular evaluation of centromere-associated DNA sequences from a marsupial (Macropodidae: Macropus rufogriseus) X chromosome. Genetics 172: 1129-1137.
5. BULAZEL, K. V., G. C. FERRERI, M. D. ELDRIDGE and R. J. O'NEILL, 2007 Species-specific shifts in centromere sequence composition are coincident with break point reuse in karyotypically divergent lineages. Genome Biol. 8: R170.
6. CACERES, M., M. Puig and A. RUIZ, 2001 Molecular characterization of two natural hotspots in the Drosophila buzzatii genome induced by transposon insertions. Genome Res. 11: 1353-1364.
7. CHENG, Z., R. M. STUPAR, M. GU and J. JIANG, 2001 A tandemly repeated DNA sequence is associated with both knob-like heterochromatin and a highly decondensed structure in the meiotic pachytene chromosomes of rice. Chromosoma 110: 24-31.
8. COOPER, D. W., C. EDWARDS, E. JAMES, G. B. SHARMAN, J. L. VANDEBERG et al., 1977 Studies on metatherian sex chromosomes. VI. A third state of an X-linked gene: partial activity for the paternally derived Pgk-A allele in cultured fibroblasts of Macropus giganteus and M. parryi. Aust. J. Biol. Sci. 30: 431-443.
9. DOBIGNY, G., C. OZOUF-COSTAZ, P. D. WATERS, C. BONILLO, J. P. COUTANCEAU et al., 2004 LINE-1 amplification accompanies explosive genome repatterning in rodents. Chromosome Res. 12: 787-793.
10. DUTRILLAUX, B., 1979 Chromosomal evolution in primates: tentative phylogeny from Microcebus murinus (Prosimian) to man. Hum. Genet. 48: 251-314.
11. ELDRIDGE, M. D. B., 1991 Chromosomal rearrangements and speciation in rock wallabies, Petrogale. Ph.D. Thesis, Macquarie University, Sydney.
12. ELDRIDGE, M. D. B., and R. L. CLOSE, 1993 Radiation of chromosome shuffles. Curr. Opin. Genet. Dev. 3: 915-922.
13. ELDRIDGE, M. D. B., and C. J. METCALFE, 2006 Marsupial chromosomes, pp. 9-62 in Atlas of Mammalian Chromosomes, edited by S. J. O'BRIEN, J. MENNINGER and W. NASH. Wiley, New York.
14. ELDRIDGE, M. D. B., R. L. CLOSE and P. G. JOHNSTON, 1991 Chromosomal rearrangements in rock wallabies Petrogale (Marsupialia: Macropodidae). IV. G-banding analysis of the Petrogale lateralis complex. Aust. J. Zool. 39: 621-628.
15. ELDRIDGE, M. D. B., P. G. JOHNSTON and R. L. CLOSE, 1992 Chromosomal rearrangements in rock wallabies, Petrogale (Marsupialia: Macropodidae). VI. Determination of the plesiomorphic karyotype: G-banding comparison of Thylogale with Petrogale persephone, P. xanthopus, and P. l. lateralis. Cytogenet. Cell Genet. 61: 29-33.
16. EVGEN'EV, M. B., H. ZELENTSOVA, H. POLUECTOVA, G. T. LYOZIN, V. VELEIKODVORSKAJA et al., 2000 Mobile elements and chromosomal evolution in the virilis group of Drosophila. Proc. Natl. Acad. Sci. USA 97: 11337-11342.
17. FERRERI, G. C., M. MARZELLI, W. RENS and R. J. O'NEILL, 2004 A centromere-specific retroviral element associated with breaks of synteny in macropodine marsupials. Cytogenet. Genome Res. 107: 115-118.
18. FERRERI, G. C., D. M. LISCINSKY, J. A. MACK, M. D. ELDRIDGE and R. J. O'NEILL, 2005 Retention of latent centromeres in the mammalian genome. J. Hered. 96: 217-224.
19. FONTDEVILA, A., 1992 Genetic instability and rapid speciation: Are they coupled? Genetica 86: 247-258.
20. FONTDEVILA, A., 2005 Hybrid genome evolution by transposition. Cytogenet. Genome Res. 110: 49-55.
21. FUKAGAWA, T., M. NOGAMI, M. YOSHIKAWA, M. IKENO, T. OKAZAKI et al., 2004 Dicer is essential for formation of the heterochromatin structure in vertebrate cells. Nat. Cell Biol. 6: 784-791.
22. GREWAL, S. I., and S. JIA, 2007 Heterochromatin revisited. Nat. Rev. Genet. 8: 35-46.
23. HAYMAN, D. L., 1990 Marsupial cytogenetics. Aust. J. Zool. 37: 331-349.
24. HENIKOFF, S., and H. S. MALIK, 2002 Centromeres: selfish drivers. Nature 417: 227.
25. HENIKOFF, S., K. AHMAD and H. S. MALIK, 2001 The centromere paradox: stable inheritance with rapidly evolving DNA. Science 293: 1098-1102.
26. HOUBEN, A., and I. SCHUBERT, 2003 DNA and proteins of plant centromeres. Curr. Opin. Plant Biol. 6: 554-560.
27. KANELLOPOULOU, C., S. A. MULJO, A. L. KUNG, S. GANESAN, R. DRAPKIN et al., 2005 Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing. Genes Dev. 19: 489-501.
28. KEHRER-SAWATZKI, H., B. SCHREINER, S. TANZER, M. PLATZER, S. MULLER et al., 2002 Molecular characterization of the pericentric inversion that causes differences between chimpanzee chromosome 19 and human chromosome 17. Am. J. Hum. Genet. 71: 375-388.
29. KING, M., 1993 Species Evolution: The Role of Chromosome Change. Cambridge University Press, Cambridge, UK.
30. LABRADOR, M., M. FARRE, F. UTZET and A. FONTDEVILA, 1999 Interspecific hybridization increases transposition rates of Osvaldo. Mol. Biol. Evol. 16: 931-937.
31. LIM, J. K., 1988 Intrachromosomal rearrangements mediated by hobo transposons in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 85: 9153-9157.
32. LIM, J. K., and M. J. SIMMONS, 1994 Gross chromosome rearrangements mediated by transposable elements in Drosophila melanogaster. BioEssays 16: 269-275.
33. LIPPMAN, Z., and R. MARTIENSSEN, 2004 The role of RNA interference in heterochromatic silencing. Nature 431: 364-370.
34. LOWRY, P. S., M. D. B. ELDRIDGE and P. G. JOHNSTON, 1995 Genetic analysis of a female macropodid hybrid (Macropus agilis X M. rufogriseus) and her backcross offspring. Aust. Mammal. 18: 79-82.
35. MALIK, H. S., and S. HENIKOFF, 2001 Adaptive evolution of Cid, a centromere-specific histone in Drosophila. Genetics 157: 1293-1298.
36. MALIK, H. S., and S. HENIKOFF, 2002 Conflict begets complexity: the evolution of centromeres. Curr. Opin. Genet. Dev. 12: 711-718.
37. MARTIN, R., W. BUSCH, R. G. HERRMANN and G. WANNER, 1994 Efficient preparation of plant chromosomes for high-resolution scanning electron microscopy. Chromosome Res. 2: 411-415.
38. MCCLINTOCK, B., 1929 Chromosome morphology in Zea Mays. Science 69: 629.
39. MCCLINTOCK, B., 1987 The Discovery and Characterization of Transposable Elements. Garland Publishing, New York.
40. MEISTER, G., and T. TUSCHL, 2004 Mechanisms of gene silencing by double-stranded RNA. Nature 431: 343-349.
41. MINIOU, P., M. JEANPIERRE, V. BLANQUET, V. SIBELLA, D. BONNEAU et al., 1994 Abnormal methylation pattern in constitutive and facultative (X inactive chromosome) heterochromatin of ICF patients. Hum. Mol. Genet. 3: 2093-2102.
42. O'NEILL, R. J., M. J. O'NEILL and J. A. MARSHALL GRAVES, 1998 Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid. Nature 393: 68-72.
43. O'NEILL, R. J., M. D. B. ELDRIDGE, R. TODER, M. A. FERGUSON-SMITH, P. C. O'BRIEN et al., 1999 Chromosome evolution in kangaroos (Marsupialia: Macropodidae): cross species chromosome painting between the tammar wallaby and rock wallaby spp. with the 2n = 22 ancestral macropodid karyotype. Genome 42: 525-530.
44. O'NEILL, R. J., M. D. B. ELDRIDGE and J. A. M. GRAVES, 2001 Chromosome heterozygosity and de novo chromosome rearrangements in mammalian interspecies hybrids. Mamm. Genome 12: 256-259.
45. O'NEILL, R. J., M. D. B. ELDRIDGE and C. J. METCALFE, 2004 Centromere dynamics and chromosome evolution in marsupials. J. Hered. 95: 375-381.
46. PAL-BHADRA, M., B. A. LEIBOVITCH, S. G. GANDHI, M. RAO, U. BHADRA et al., 2004 Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery. Science 303: 669-672.
47. PARDO-MANUEL DE VILLENA, F., and C. SAPIENZA, 2001 Female meiosis drives karyotypic evolution in mammals. Genetics 159: 1179-1189.
48. RENS, W., P. C. M. O'BRIEN, F. YANG, J. A. M. GRAVES and M. A. FERGUSON-SMITH, 1999 Karyotype relationships between four distantly related marsupials revealed by reciprocal chromosome painting. Chromosome Res. 7: 461-474.
49. ROFE, R. H., 1978 G-banded chromosomes and the evolution of the Macropodidae. Aust. Mammal. 2: 53-63.
50. RUIZ-HERRERA, A., J. CASTRESANA and T. ROBINSON, 2006 Is mammalian chromosomal evolution driven by regions of genome fragility? Genome Biol. 7: R115.
51. SCHWARTZ, A., D. CHAN, L. BROWN, R. ALAGAPPAN, D. PETTAY et al., 1998 Reconstructing hominid Y evolution: X-homologous block, created by X-Y transposition, was disrupted by Yp inversion through LINE-LINE recombination. Hum. Mol. Genet. 7: 1-11.
52. SHARMAN, G. B., 1961 The mitotic chromosomes of marsupials and their bearing on taxonomy and phylogeny. Aust. J. Zool. 9: 38-60.
53. SUGIMOTO, K., H. YATA, Y. MURO and M. HIMENO, 1994 Human centromere protein C (CENP-C) is a DNA-binding protein which possesses a novel DNA-binding motif. J. Biochem. 116: 877-881.
54. SUMNER, A., 1972 A simple technique for demonstrating centromeric heterochromatin. Exp. Cell Res. 75: 304-306.
55. SUMNER, A., 1998 The structure of the centromeric region of CHO chromosomes. Cell Biol. Int. 22(2): 127-130.
56. SUMNER, A., 2003 Chromosomes: Organisation and Structure. Blackwell Science, Malden, MA.
57. TALBERT, P. B., T. D. BRYSON and S. HENIKOFF, 2004 Adaptive evolution of centromere proteins in plants and animals. J. Biol. 3: 18.
58. UNGERER, M. C., S. C. STRAKOSH and Y. ZHEN, 2006 Genome expansion in three hybrid sunflower species is associated with retro-transposon proliferation. Curr. Biol. 16: R872-R873.
59. VOLPE, T. A., C. KIDNER, I. M. HALL, G. TENG, S. I. S. GREWAL et al., 2002 Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 297: 1833-1837.
60. VOLPE, T., V. SCHRAMKE, G. L. HAMILTON, S. A. WHITE, G. TENG et al., 2003 RNA interference is required for normal centromere function infission yeast. Chromosome Res. 11: 137-146.
61. WANNER, G., and H. FORMANEK, 1995 Imaging of DNA in human and plant chromosomes by high-resolution scanning electron microscopy. Chromosome Res. 3: 368-374.
62. WANNER, G., and H. FORMANEK, 2000 A new chromosome model. J. Struct. Biol. 132: 147-161.
63. ZHANG, J., and T. PETERSON, 1999 Genome rearrangements by non-linear transposons in maize. Genetics 153: 1403-1410