-
1
-
-
33846032330
-
Xist and the order of silencing
-
DOI 10.1038/sj.embor.7400871, PII 7400871
-
Xist and the order of silencing. Ng K, Pullirsch D, Leeb M, Wutz A, EMBO Rep 2007 8 34 39 10.1038/sj.embor.7400871 17203100 (Pubitemid 46043797)
-
(2007)
EMBO Reports
, vol.8
, Issue.1
, pp. 34-39
-
-
Ng, K.1
Pullirsch, D.2
Leeb, M.3
Wutz, A.4
-
2
-
-
69249235745
-
Lessons from X-chromosome inactivation: Long ncRNA as guides
-
10.1101/gad.1811209 19684108
-
Lessons from X-chromosome inactivation: long ncRNA as guides. Lee JT, Genes Dev 2009 23 1831 1842 10.1101/gad.1811209 19684108
-
(2009)
Genes Dev
, vol.23
, pp. 1831-1842
-
-
Lee, J.T.1
-
3
-
-
39049093762
-
Regulation of imprinting in clusters: Noncoding RNAs versus insulators
-
18282507
-
Regulation of imprinting in clusters: noncoding RNAs versus insulators. Wan L-B, Bartolomei MS, Adv Genet 2008 61 207 223 18282507
-
(2008)
Adv Genet
, vol.61
, pp. 207-223
-
-
Wan, L.-B.1
Bartolomei, M.S.2
-
4
-
-
79960530899
-
Genomic imprinting: The emergence of an epigenetic paradigm
-
21765458
-
Genomic imprinting: the emergence of an epigenetic paradigm. Ferguson-Smith AC, Nat Rev Genet 2011 12 565 575 21765458
-
(2011)
Nat Rev Genet
, vol.12
, pp. 565-575
-
-
Ferguson-Smith, A.C.1
-
5
-
-
34248162440
-
Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
-
DOI 10.1101/gr.6036807
-
Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs. Ponjavic J, Ponting CP, Lunter G, Genome Res 2007 17 556 565 10.1101/gr.6036807 17387145 (Pubitemid 46715505)
-
(2007)
Genome Research
, vol.17
, Issue.5
, pp. 556-565
-
-
Ponjavic, J.1
Ponting, C.P.2
Lunter, G.3
-
6
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
10.1038/nature07672 19182780
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Guttman M, et al. Nature 2009 458 223 227 10.1038/nature07672 19182780
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
-
7
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
-
10.1101/gr.132159.111 22955988
-
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Derrien T, Genome Res 2012 22 1775 1789 10.1101/gr.132159.111 22955988
-
(2012)
Genome Res
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
-
8
-
-
55349109963
-
Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome
-
10.1126/science.1163045 18974356
-
Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Zhao J, Sun BK, Erwin JA, Song J-J, Lee JT, Science 2008 322 750 756 10.1126/science.1163045 18974356
-
(2008)
Science
, vol.322
, pp. 750-756
-
-
Zhao, J.1
Sun, B.K.2
Erwin, J.A.3
Song, J.-J.4
Lee, J.T.5
-
9
-
-
77954572735
-
Long noncoding RNA as modular scaffold of histone modification complexes
-
10.1126/science.1192002 20616235
-
Long noncoding RNA as modular scaffold of histone modification complexes. Tsai M-C, Manor O, Wan Y, Mosammaparast N, Wang JK, Lan F, Shi Y, Segal E, Chang HY, Science 2010 329 689 693 10.1126/science.1192002 20616235
-
(2010)
Science
, vol.329
, pp. 689-693
-
-
Tsai, M.-C.1
Manor, O.2
Wan, Y.3
Mosammaparast, N.4
Wang, J.K.5
Lan, F.6
Shi, Y.7
Segal, E.8
Chang, H.Y.9
-
10
-
-
80054756754
-
Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions
-
10.1016/j.molcel.2011.09.009 21981911
-
Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions. Chu C, Qu K, Zhong FL, Artandi SE, Chang HY, Mol Cell 2011 44 1 12 10.1016/j.molcel.2011.09.009 21981911
-
(2011)
Mol Cell
, vol.44
, pp. 1-12
-
-
Chu, C.1
Qu, K.2
Zhong, F.L.3
Artandi, S.E.4
Chang, H.Y.5
-
11
-
-
84871069553
-
Epigenetic regulation by long noncoding RNAs
-
10.1126/science.1231776 23239728
-
Epigenetic regulation by long noncoding RNAs. Lee JT, Science 2012 338 1435 1439 10.1126/science.1231776 23239728
-
(2012)
Science
, vol.338
, pp. 1435-1439
-
-
Lee, J.T.1
-
12
-
-
84879987789
-
LincRNAs: Genomics, evolution, and mechanisms
-
10.1016/j.cell.2013.06.020 23827673
-
LincRNAs: genomics, evolution, and mechanisms. Ulitsky I, Bartel DP, Cell 2013 154 26 46 10.1016/j.cell.2013.06.020 23827673
-
(2013)
Cell
, vol.154
, pp. 26-46
-
-
Ulitsky, I.1
Bartel, D.P.2
-
13
-
-
17744391429
-
Co-evolution of X-chromosome inactivation and imprinting in mammals
-
DOI 10.1038/nrg1602
-
Co-evolution of X-chromosome inactivation and imprinting in mammals. Reik W, Lewis A, Nat Rev Genet 2005 6 403 410 15818385 (Pubitemid 40577183)
-
(2005)
Nature Reviews Genetics
, vol.6
, Issue.5
, pp. 403-410
-
-
Reik, W.1
Lewis, A.2
-
14
-
-
84455206362
-
Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution
-
10.1016/j.cell.2011.11.055 22196729
-
Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. Ulitsky I, Shkumatava A, Jan CH, Sive H, Bartel DP, Cell 2011 147 1537 1550 10.1016/j.cell.2011.11.055 22196729
-
(2011)
Cell
, vol.147
, pp. 1537-1550
-
-
Ulitsky, I.1
Shkumatava, A.2
Jan, C.H.3
Sive, H.4
Bartel, D.P.5
-
15
-
-
84861222896
-
The long non-coding RNA, MHM, plays a role in chicken embryonic development, including gonadogenesis
-
10.1016/j.ydbio.2012.03.025 22546690
-
The long non-coding RNA, MHM, plays a role in chicken embryonic development, including gonadogenesis. Roeszler KN, Itman C, Sinclair AH, Smith CA, Dev Biol 2012 366 317 326 10.1016/j.ydbio.2012.03.025 22546690
-
(2012)
Dev Biol
, vol.366
, pp. 317-326
-
-
Roeszler, K.N.1
Itman, C.2
Sinclair, A.H.3
Smith, C.A.4
-
16
-
-
84880429542
-
Tandem stem-loops in roX RNAs act together to mediate X chromosome dosage compensation in Drosophila
-
10.1016/j.molcel.2013.07.001 23870142
-
Tandem stem-loops in roX RNAs act together to mediate X chromosome dosage compensation in Drosophila. Ilik IA, et al. Mol Cell 2013 51 156 173 10.1016/j.molcel.2013.07.001 23870142
-
(2013)
Mol Cell
, vol.51
, pp. 156-173
-
-
Ilik, I.A.1
-
17
-
-
0034713375
-
Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene
-
DOI 10.1038/35013100
-
Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene. Bell AC, Felsenfeld G, Nature 2000 405 482 485 10.1038/35013100 10839546 (Pubitemid 30367427)
-
(2000)
Nature
, vol.405
, Issue.6785
, pp. 482-485
-
-
Bell, A.C.1
Felsenfeld, G.2
-
18
-
-
0037075032
-
The non-coding Air RNA is required for silencing autosomal imprinted genes
-
The non-coding Air RNA is required for silencing autosomal imprinted genes. Sleutels F, Zwart R, Barlow DP, Nature 2002 415 810 813 10.1038/415810a 11845212 (Pubitemid 34150505)
-
(2002)
Nature
, vol.415
, Issue.6873
, pp. 810-813
-
-
Sleutels, F.1
Zwart, R.2
Barlow, D.P.3
-
19
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
DOI 10.1016/j.cell.2007.05.022, PII S0092867407006599
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Rinn JL, et al. Cell 2007 129 1311 1323 10.1016/j.cell.2007.05.022 17604720 (Pubitemid 46962090)
-
(2007)
Cell
, vol.129
, Issue.7
, pp. 1311-1323
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
Squazzo, S.L.4
Xu, X.5
Brugmann, S.A.6
Goodnough, L.H.7
Helms, J.A.8
Farnham, P.J.9
Segal, E.10
Chang, H.Y.11
-
20
-
-
34248547495
-
Characterization of a germ-line deletion, including the entire INK4/ARF locus, in a melanoma-neural system tumor family: Identification of ANRIL, an antisense noncoding RNA whose expression coclusters with ARF
-
DOI 10.1158/0008-5472.CAN-06-2004
-
Characterization of a germ-line deletion, including the entire INK4/ARF locus, in a melanoma-neural system tumor family: identification of ANRIL, an antisense noncoding RNA whose expression coclusters with ARF. Pasmant E, Laurendeau I, Heron D, Vidaud M, Vidaud D, Bieche I, Cancer Res 2007 67 3963 3969 10.1158/0008-5472.CAN-06-2004 17440112 (Pubitemid 46762186)
-
(2007)
Cancer Research
, vol.67
, Issue.8
, pp. 3963-3969
-
-
Pasmant, E.1
Laurendeau, I.2
Heron, D.3
Vidaud, M.4
Vidaud, D.5
Bieche, I.6
-
21
-
-
38049155825
-
Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA
-
10.1038/nature06468 18185590
-
Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA. Yu W, Gius D, Onyango P, Muldoon-Jacobs K, Karp J, Feinberg AP, Cui H, Nature 2008 451 202 206 10.1038/nature06468 18185590
-
(2008)
Nature
, vol.451
, pp. 202-206
-
-
Yu, W.1
Gius, D.2
Onyango, P.3
Muldoon-Jacobs, K.4
Karp, J.5
Feinberg, A.P.6
Cui, H.7
-
22
-
-
79955468280
-
Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15INK4B tumor suppressor gene
-
10.1038/onc.2010.568 21151178
-
Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15INK4B tumor suppressor gene. Kotake Y, Nakagawa T, Kitagawa K, Suzuki S, Liu N, Kitagawa M, Xiong Y, Oncogene 2011 30 1956 1962 10.1038/onc.2010.568 21151178
-
(2011)
Oncogene
, vol.30
, pp. 1956-1962
-
-
Kotake, Y.1
Nakagawa, T.2
Kitagawa, K.3
Suzuki, S.4
Liu, N.5
Kitagawa, M.6
Xiong, Y.7
-
24
-
-
65549111754
-
Infernal 1.0: Inference of RNA alignments
-
10.1093/bioinformatics/btp157 19307242
-
Infernal 1.0: inference of RNA alignments. Nawrocki EP, Kolbe DL, Eddy S, Bioinformatics 2009 25 1335 1337 10.1093/bioinformatics/btp157 19307242
-
(2009)
Bioinformatics
, vol.25
, pp. 1335-1337
-
-
Nawrocki, E.P.1
Kolbe, D.L.2
Eddy, S.3
-
25
-
-
70449707788
-
The use of covariance models to annotate RNAs in whole genomes
-
10.1093/bfgp/elp042 19833700
-
The use of covariance models to annotate RNAs in whole genomes. Gardner PP, Brief Funct Genomic Proteomic 2009 8 444 450 10.1093/bfgp/elp042 19833700
-
(2009)
Brief Funct Genomic Proteomic
, vol.8
, pp. 444-450
-
-
Gardner, P.P.1
-
26
-
-
0021944119
-
Evolution and extinction of transposable elements in Mendelian populations
-
Evolution and extinction of transposable elements in Mendelian populations. Kaplan N, Darden T, Langley CH, Genetics 1985 109 459 480 2982700 (Pubitemid 15125917)
-
(1985)
Genetics
, vol.109
, Issue.2
, pp. 459-480
-
-
Kaplan, N.1
Darden, T.2
Langley, C.H.3
-
27
-
-
34147105638
-
The evolutionary history of human DNA transposons: Evidence for intense activity in the primate lineage
-
DOI 10.1101/gr.5826307
-
The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage. Pace JK 2nd, Feschotte C, Genome Res 2007 17 422 432 10.1101/gr.5826307 17339369 (Pubitemid 46556446)
-
(2007)
Genome Research
, vol.17
, Issue.4
, pp. 422-432
-
-
Pace II, J.K.1
Feschotte, C.2
-
28
-
-
70350653828
-
Accurate and efficient reconstruction of deep phylogenies from structured RNAs
-
10.1093/nar/gkp600 19723687
-
Accurate and efficient reconstruction of deep phylogenies from structured RNAs. Stocsits RR, Letsch H, Hertel J, Misof B, Stadler PF, Nucleic Acid Res 2009 37 6184 6193 10.1093/nar/gkp600 19723687
-
(2009)
Nucleic Acid Res
, vol.37
, pp. 6184-6193
-
-
Stocsits, R.R.1
Letsch, H.2
Hertel, J.3
Misof, B.4
Stadler, P.F.5
-
29
-
-
0034129663
-
RRTree: Relative-Rate Tests between groups of sequences on a phylogenetic tree
-
RRTree: relative-rate tests between groups of sequences on a phylogenetic tree. Robinson-Rechavi M, Huchon D, Bioinformatics 2000 16 296 297 10.1093/bioinformatics/16.3.296 10869026 (Pubitemid 30352860)
-
(2000)
Bioinformatics
, vol.16
, Issue.3
, pp. 296-297
-
-
Robinson-Rechavi, M.1
Huchon, D.2
-
30
-
-
78651325932
-
LncRNAdb: A reference database for long noncoding RNAs
-
10.1093/nar/gkq1138
-
lncRNAdb: a reference database for long noncoding RNAs. Amaral PP, Clark MB, Gascoigne DK, Dinger ME, Mattick JS, Nuc Acids Res 2011 39 146 D151 10.1093/nar/gkq1138
-
(2011)
Nuc Acids Res
, vol.39
-
-
Amaral, P.P.1
Clark, M.B.2
Gascoigne, D.K.3
Dinger, M.E.4
Mattick, J.S.5
-
31
-
-
33745125901
-
The Xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene
-
DOI 10.1126/science.1126316
-
The Xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene. Duret L, Chureau C, Samain S, Weissenbach J, Avner P, Science 2006 312 1653 1655 10.1126/science.1126316 16778056 (Pubitemid 43902664)
-
(2006)
Science
, vol.312
, Issue.5780
, pp. 1653-1655
-
-
Duret, L.1
Chureau, C.2
Samain, S.3
Weissanbach, J.4
Avner, P.5
-
32
-
-
70349569056
-
Functional analysis of the chromosome 9p21.3 coronary artery disease risk locus
-
10.1161/ATVBAHA.109.189522 19592466
-
Functional analysis of the chromosome 9p21.3 coronary artery disease risk locus. Jarinova O, et al. Arterioscler Thromb Vasc Biol 2009 29 1671 1677 10.1161/ATVBAHA.109.189522 19592466
-
(2009)
Arterioscler Thromb Vasc Biol
, vol.29
, pp. 1671-1677
-
-
Jarinova, O.1
-
33
-
-
84876864345
-
Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs
-
2005 10.1371/journal.pgen.1003470 23637635
-
Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs. Kapusta A, Kronenberg Z, Lynch VJ, Zhuo X, Ramsay LA, Bourque G, Yandell M, Feschotte C, PLoS Genet 2013 9 1003470 2005 10.1371/journal.pgen.1003470 23637635
-
(2013)
PLoS Genet
, vol.9
, pp. 51003470
-
-
Kapusta, A.1
Kronenberg, Z.2
Lynch, V.J.3
Zhuo, X.4
Ramsay, L.A.5
Bourque, G.6
Yandell, M.7
Feschotte, C.8
-
34
-
-
84869881863
-
Transposable elements reveal a stem cell specific class of long noncoding RNAs
-
10.1186/gb-2012-13-11-r107 23181609
-
Transposable elements reveal a stem cell specific class of long noncoding RNAs. Kelley DR, Rinn J, Genome Biol 2012 13 107 10.1186/gb-2012-13-11-r107 23181609
-
(2012)
Genome Biol
, vol.13
, pp. 18107
-
-
Kelley, D.R.1
Rinn, J.2
-
35
-
-
50349089199
-
Beyond DNA: RNA editing and steps toward Alu exonization in primates
-
10.1016/j.jmb.2008.07.014 18680752
-
Beyond DNA: RNA editing and steps toward Alu exonization in primates. Möller-Krull1 M, Zemann A, Roos C, Brosius J, Schmitz J, J Mol Biol 2008 382 601 609 10.1016/j.jmb.2008.07.014 18680752
-
(2008)
J Mol Biol
, vol.382
, pp. 601-609
-
-
Möller-Krull, M.1
Zemann, A.2
Roos, C.3
Brosius, J.4
Schmitz, J.5
-
36
-
-
17744388101
-
Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence
-
DOI 10.1101/gr.174901
-
Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence. Nesterova TB, et al. Genome Res 2001 11 833 849 10.1101/gr.174901 11337478 (Pubitemid 32447867)
-
(2001)
Genome Research
, vol.11
, Issue.5
, pp. 833-849
-
-
Nesterova, T.B.1
Slobodyanyuk, S.Ya.2
Elisaphenko, E.A.3
Shevchenko, A.I.4
Johnston, C.5
Pavlova, M.E.6
Rogozin, I.B.7
Kolesnikov, N.N.8
Brockdorff, N.9
Zakian, S.M.10
-
37
-
-
40549109924
-
Susceptibility to coronary artery disease and diabetes is encoded by distinct, tightly linked SNPs in the ANRIL locus on chromosome 9p
-
DOI 10.1093/hmg/ddm352
-
Susceptibility to coronary artery disease and diabetes is encoded by distinct, tightly linked SNPs in the ANRIL locus on chromosome 9p. Broadbent HM, et al. Hum Mol Genet 2008 17 806 814 18048406 (Pubitemid 351359697)
-
(2008)
Human Molecular Genetics
, vol.17
, Issue.6
, pp. 806-814
-
-
Broadbent, H.M.1
Peden, J.F.2
Lorkowski, S.3
Goel, A.4
Ongen, H.5
Green, F.6
Clarke, R.7
Collins, R.8
Franzosi, M.G.9
Tognoni, G.10
Seedorf, U.11
Rust, S.12
Eriksson, P.13
Hamsten, A.14
Farrall, M.15
Watkins, H.16
-
38
-
-
77949775636
-
Targeted deletion of the 9p21 non-coding coronary artery disease risk interval in mice
-
10.1038/nature08801 20173736
-
Targeted deletion of the 9p21 non-coding coronary artery disease risk interval in mice. Visel A, Zhu Y, May D, Afzal V, Gong E, Attanasio C, Blow MJ, Cohen JC, Rubin EM, Pennacchio LA, Nature 2010 464 409 412 10.1038/nature08801 20173736
-
(2010)
Nature
, vol.464
, pp. 409-412
-
-
Visel, A.1
Zhu, Y.2
May, D.3
Afzal, V.4
Gong, E.5
Attanasio, C.6
Blow, M.J.7
Cohen, J.C.8
Rubin, E.M.9
Pennacchio, L.A.10
-
39
-
-
79551623370
-
ANRIL, a long, noncoding RNA, is an unexpected major hotspot in GWAS
-
ANRIL, a long, noncoding RNA, is an unexpected major hotspot in GWAS. Pasmant E, Sabbagh A, Vidaud M, Bieche I, The FASEB J 2010 25 444 448
-
(2010)
The FASEB J
, vol.25
, pp. 444-448
-
-
Pasmant, E.1
Sabbagh, A.2
Vidaud, M.3
Bieche, I.4
-
40
-
-
80055010534
-
Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals
-
10.1038/ng.917 21946353
-
Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals. Lynch VJ, Leclerc RD, May G, Wagner GP, Nat Genet 2011 43 1154 1159 10.1038/ng.917 21946353
-
(2011)
Nat Genet
, vol.43
, pp. 1154-1159
-
-
Lynch, V.J.1
Leclerc, R.D.2
May, G.3
Wagner, G.P.4
-
41
-
-
33644503176
-
A large family of ancient repeat elements in the human genome is under strong selection
-
10.1073/pnas.0511238103 16477033
-
A large family of ancient repeat elements in the human genome is under strong selection. Kamal M, Xie X, Lander ES, Proc Natl Acad Sci USA 2006 103 2740 2745 10.1073/pnas.0511238103 16477033
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 2740-2745
-
-
Kamal, M.1
Xie, X.2
Lander, E.S.3
-
42
-
-
84555187722
-
From 'JUNK' to just unexplored noncoding knowledge: The case of transcribed Alus
-
10.1093/bfgp/elr029 21987713
-
From 'JUNK' to just unexplored noncoding knowledge: the case of transcribed Alus. Pandey R, Mukerji M, Brief Funct Genomics 2011 10 294 311 10.1093/bfgp/elr029 21987713
-
(2011)
Brief Funct Genomics
, vol.10
, pp. 294-311
-
-
Pandey, R.1
Mukerji, M.2
-
43
-
-
79951495822
-
LncRNAs transactivate STAU1-mediatedmRNA decay by duplexing with 39 UTRs via Alu elements
-
10.1038/nature09701 21307942
-
LncRNAs transactivate STAU1-mediatedmRNA decay by duplexing with 39 UTRs via Alu elements. Gong C, Maquat LE, Nature 2011 470 284 288 10.1038/nature09701 21307942
-
(2011)
Nature
, vol.470
, pp. 284-288
-
-
Gong, C.1
Maquat, L.E.2
-
44
-
-
79955088437
-
The sequence, structure and evolutionary features of HOTAIR in mammals
-
10.1186/1471-2148-11-102 21496275
-
The sequence, structure and evolutionary features of HOTAIR in mammals. He S, Liu S, Zhu H, BMC Evol Biol 2011 11 102 10.1186/1471-2148-11-102 21496275
-
(2011)
BMC Evol Biol
, vol.11
, pp. 102
-
-
He, S.1
Liu, S.2
Zhu, H.3
-
45
-
-
79957983437
-
Structural and functional differences in the long non-coding RNA Hotair in mouse and human
-
10.1371/journal.pgen.1002071 21637793
-
Structural and functional differences in the long non-coding RNA Hotair in mouse and human. Schorderet P, Duboule D, PLoS Genet 2011 7 1002071 10.1371/journal.pgen.1002071 21637793
-
(2011)
PLoS Genet
, vol.7
, pp. 51002071
-
-
Schorderet, P.1
Duboule, D.2
-
46
-
-
0017771466
-
Evolution and tinkering
-
10.1126/science.860134 860134
-
Evolution and tinkering. Jacob F, Science 1977 196 1161 1166 10.1126/science.860134 860134
-
(1977)
Science
, vol.196
, pp. 1161-1166
-
-
Jacob, F.1
-
47
-
-
0031440969
-
Molecular domestication of mobile elements
-
Molecular domestication of mobile elements. Miller WJ, McDonald JF, Pinsker W, Genetica 1997 100 261 270 10.1023/A:1018306317836 9440279 (Pubitemid 28034773)
-
(1997)
Genetica
, vol.100
, Issue.1-3
, pp. 261-270
-
-
Miller, W.J.1
McDonald, J.F.2
Pinsker, W.3
-
48
-
-
0035997904
-
Transposable elements and the evolution of eukaryotic complexity
-
Transposable elements and the evolution of eukaryotic complexity. Bowen NJ, Jordan IK, Curr Issues Mol Biol 2002 4 65 76 12074196 (Pubitemid 34649544)
-
(2002)
Current Issues in Molecular Biology
, vol.4
, Issue.3
, pp. 65-76
-
-
Bowen, N.J.1
Jordan, I.K.2
-
49
-
-
33744497802
-
Birth of a chimeric primate gene by capture of the transposase gene from a mobile element
-
DOI 10.1073/pnas.0601161103
-
Birth of a chimeric primate gene by capture of the transposase gene from a mobile element. Cordaux R, Udit S, Batzer MA, Feschotte C, Proc Natl Acad Sci USA 2006 103 8101 8106 10.1073/pnas.0601161103 16672366 (Pubitemid 43801059)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.21
, pp. 8101-8106
-
-
Cordaux, R.1
Udit, S.2
Batzer, M.A.3
Feschotte, C.4
-
50
-
-
37549067404
-
Evolution of the xenopus piggyBac transposon family TxpB: Domesticated and untamed strategies of transposon subfamilies
-
10.1093/molbev/msm191 17934208
-
Evolution of the xenopus piggyBac transposon family TxpB: domesticated and untamed strategies of transposon subfamilies. Hikosaka A, Kobayashi T, Saito Y, Kawahara A, Mol Biol Evol 2007 24 2648 2656 10.1093/molbev/msm191 17934208
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2648-2656
-
-
Hikosaka, A.1
Kobayashi, T.2
Saito, Y.3
Kawahara, A.4
-
51
-
-
38349103460
-
Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals
-
17940212
-
Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals. Casola C, Hucks D, Feschotte C, Mol Biol Evol 2008 25 29 41 17940212
-
(2008)
Mol Biol Evol
, vol.25
, pp. 29-41
-
-
Casola, C.1
Hucks, D.2
Feschotte, C.3
-
52
-
-
42349096534
-
Transposable elements and the evolution of regulatory networks
-
DOI 10.1038/nrg2337, PII NRG2337
-
Transposable elements and the evolution of regulatory networks. Feschotte C, Nat Rev Genet 2008 9 397 405 10.1038/nrg2337 18368054 (Pubitemid 351556062)
-
(2008)
Nature Reviews Genetics
, vol.9
, Issue.5
, pp. 397-405
-
-
Feschotte, C.1
-
53
-
-
84868534630
-
Transposable elements, epigenetics, and genome evolution
-
10.1126/science.338.6108.758 23145453
-
Transposable elements, epigenetics, and genome evolution. Fedoroff NV, Science 2012 338 758 767 10.1126/science.338.6108.758 23145453
-
(2012)
Science
, vol.338
, pp. 758-767
-
-
Fedoroff, N.V.1
-
54
-
-
79960634800
-
Selfish genetic elements, genetic conflict, and evolutionary innovation
-
10.1073/pnas.1102343108 21690392
-
Selfish genetic elements, genetic conflict, and evolutionary innovation. Werren JH, Proc Natl Acad Sci USA 2011 108 10863 10870 10.1073/pnas.1102343108 21690392
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 10863-10870
-
-
Werren, J.H.1
-
55
-
-
67849122320
-
MEME SUITE: Tools for motif discovery and searching
-
10.1093/nar/gkp335
-
MEME SUITE: tools for motif discovery and searching. Bailey TL, Bodén M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS, Nuc Acids Res 2009 37 202 W208 10.1093/nar/gkp335
-
(2009)
Nuc Acids Res
, vol.37
-
-
Bailey, T.L.1
Bodén, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
Clementi, L.6
Ren, J.7
Li, W.W.8
Noble, W.S.9
-
56
-
-
13744252890
-
MAFFT version 5: Improvement in accuracy of multiple sequence alignment
-
DOI 10.1093/nar/gki198
-
MAFFT version 5: improvement in accuracy of multiple sequence alignment. Katoh K, Kuma K, Toh H, Miyata T, Nuc Acids Res 2005 33 511 518 10.1093/nar/gki198 (Pubitemid 40360980)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.2
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.-I.2
Toh, H.3
Miyata, T.4
-
57
-
-
0000122573
-
Phylip - Phylogeny inference package
-
Phylip-phylogeny inference package. Felsenstein J, Cladistics 1989 5 164 166
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
58
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
10.1093/molbev/msr121 21546353
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S, Mol Biol Evol 2011 28 2731 2739 10.1093/molbev/msr121 21546353
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
59
-
-
79960130696
-
TimeTree2: Species divergence times on the iPhone
-
10.1093/bioinformatics/btr315 21622662
-
TimeTree2: species divergence times on the iPhone. Kumar S, Hedges SB, Bioinformatics 2011 27 2023 2024 10.1093/bioinformatics/btr315 21622662
-
(2011)
Bioinformatics
, vol.27
, pp. 2023-2024
-
-
Kumar, S.1
Hedges, S.B.2
-
60
-
-
84860109324
-
MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space
-
10.1093/sysbio/sys029 22357727
-
MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Hohna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP, Syst Biol 2012 61 539 542 10.1093/sysbio/sys029 22357727
-
(2012)
Syst Biol
, vol.61
, pp. 539-542
-
-
Ronquist, F.1
Teslenko, M.2
Van Der Mark, P.3
Ayres, D.L.4
Darling, A.5
Hohna, S.6
Larget, B.7
Liu, L.8
Suchard, M.A.9
Huelsenbeck, J.P.10
|