-
1
-
-
75949088274
-
DNA zip codes control an ancient mechanism for gene targeting to the nuclear periphery
-
Ahmed S, Brickner DG, LightWH,Cajigas I,McDonough M, Froyshteter AB, Volpe T, Brickner JH. 2010. DNA zip codes control an ancient mechanism for gene targeting to the nuclear periphery. Nat Cell Biol 12: 111-118.
-
(2010)
Nat Cell Biol
, vol.12
, pp. 111-118
-
-
Ahmed, S.1
Brickner, D.G.2
Light, W.H.3
Cajigas, I.4
McDonough, M.5
Froyshteter, A.B.6
Volpe, T.7
Brickner, J.H.8
-
2
-
-
36849038994
-
Sensing X chromosome pairs before X inactivation via a novel X-pairing region of the Xic
-
Augui S, Filion GJ, Huart S, Nora E, Guggiari M, Maresca M, Stewart AF, Heard E. 2007. Sensing X chromosome pairs before X inactivation via a novel X-pairing region of the Xic. Science 318: 1632-1636.
-
(2007)
Science
, vol.318
, pp. 1632-1636
-
-
Augui, S.1
Filion, G.J.2
Huart, S.3
Nora, E.4
Guggiari, M.5
Maresca, M.6
Stewart, A.F.7
Heard, E.8
-
3
-
-
33644751726
-
Transient colocalization of X-inactivation centres accompanies the initiation of X inactivation
-
Bacher CP, Guggiari M, Brors B, Augui S, Clerc P, Avner P, Eils R, Heard E. 2006. Transient colocalization of X-inactivation centres accompanies the initiation of X inactivation. Nat Cell Biol 8: 293-299.
-
(2006)
Nat Cell Biol
, vol.8
, pp. 293-299
-
-
Bacher, C.P.1
Guggiari, M.2
Brors, B.3
Augui, S.4
Clerc, P.5
Avner, P.6
Eils, R.7
Heard, E.8
-
4
-
-
78651514974
-
Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila
-
Bantignies F, Roure V, Comet I, Leblanc B, Schuettengruber B, Bonnet J, Tixier V, Mas A, Cavalli G. 2011. Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila. Cell 144: 214-226.
-
(2011)
Cell
, vol.144
, pp. 214-226
-
-
Bantignies, F.1
Roure, V.2
Comet, I.3
Leblanc, B.4
Schuettengruber, B.5
Bonnet, J.6
Tixier, V.7
Mas, A.8
Cavalli, G.9
-
6
-
-
78650994865
-
The three-dimensional folding of the αglobin gene domain reveals formation of chromatin globules
-
Bau D, Sanyal A, Lajoie BR, Capriotti E, Byron M, Lawrence JB, Dekker J, Marti-Renom MA. 2010. The three-dimensional folding of the αglobin gene domain reveals formation of chromatin globules. Nat Struct Mol Biol 18: 107-114.
-
(2010)
Nat Struct Mol Biol
, vol.18
, pp. 107-114
-
-
Bau, D.1
Sanyal, A.2
Lajoie, B.R.3
Capriotti, E.4
Byron, M.5
Lawrence, J.B.6
Dekker, J.7
Marti-Renom, M.A.8
-
7
-
-
33747174553
-
Flanking HS-62.5 and 3′ HS1, and regions upstream of the LCR, are not required for β-globin transcription
-
Bender MA, Byron R, Ragoczy T, Telling A, Bulger M, Groudine M. 2006. Flanking HS-62.5 and 3′ HS1, and regions upstream of the LCR, are not required for β-globin transcription. Blood 108: 1395-1401.
-
(2006)
Blood
, vol.108
, pp. 1395-1401
-
-
Bender, M.A.1
Byron, R.2
Ragoczy, T.3
Telling, A.4
Bulger, M.5
Groudine, M.6
-
8
-
-
0018851190
-
Ribonucleoprotein structure in nascent hnRNA is nonrandom and sequence-dependent
-
Beyer AL, Miller OL, McKnight SL. 1980. Ribonucleoprotein structure in nascent hnRNA is nonrandom and sequence-dependent. Cell 20: 75-84.
-
(1980)
Cell
, vol.20
, pp. 75-84
-
-
Beyer, A.L.1
Miller, O.L.2
McKnight, S.L.3
-
9
-
-
0035253606
-
The spatial organization of human chromosomes within the nuclei of normal and emerin-mutant cells
-
Boyle S, Gilchrist S, Bridger JM, Mahy NL, Ellis JA, BickmoreWA. 2001. The spatial organization of human chromosomes within the nuclei of normal and emerin-mutant cells. Hum Mol Genet 10: 211-219.
-
(2001)
Hum Mol Genet
, vol.10
, pp. 211-219
-
-
Boyle, S.1
Gilchrist, S.2
Bridger, J.M.3
Mahy, N.L.4
Ellis, J.A.5
Bickmore, W.A.6
-
10
-
-
33646729244
-
Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations
-
Branco MR, Pombo A. 2006. Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations. PLoS Biol 4: e138.
-
(2006)
PLoS Biol
, vol.4
-
-
Branco, M.R.1
Pombo, A.2
-
11
-
-
14044266853
-
Gene recruitment of the activated INO1 locus to the nuclear membrane
-
Brickner JH, Walter P. 2004. Gene recruitment of the activated INO1 locus to the nuclear membrane. PLoS Biol 2: e342.
-
(2004)
PLoS Biol
, vol.2
-
-
Brickner, J.H.1
Walter, P.2
-
13
-
-
30944469000
-
Coregulated human globin genes are frequently in spatial proximity when active
-
Brown JM, Leach J, Reittie JE, Atzberger A, Lee-Prudhoe J, Wood WG, Higgs DR, Iborra FJ, Buckle VJ. 2006. Coregulated human globin genes are frequently in spatial proximity when active. J Cell Biol 172: 177-187.
-
(2006)
J Cell Biol
, vol.172
, pp. 177-187
-
-
Brown, J.M.1
Leach, J.2
Reittie, J.E.3
Atzberger, A.4
Lee-Prudhoe, J.5
Wood, W.G.6
Higgs, D.R.7
Iborra, F.J.8
Buckle, V.J.9
-
14
-
-
0033215443
-
Looping versus linking: Toward a model for long-distance gene activation
-
Bulger M, Groudine M. 1999. Looping versus linking: Toward a model for long-distance gene activation. Genes Dev 13: 2465-2477.
-
(1999)
Genes Dev
, vol.13
, pp. 2465-2477
-
-
Bulger, M.1
Groudine, M.2
-
15
-
-
79551655285
-
Functional and mechanistic diversity of distal transcription enhancers
-
Bulger M, Groudine M. 2011. Functional and mechanistic diversity of distal transcription enhancers. Cell 144: 327-339.
-
(2011)
Cell
, vol.144
, pp. 327-339
-
-
Bulger, M.1
Groudine, M.2
-
17
-
-
33750465872
-
SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes
-
Cai S, Lee CC, Kohwi-Shigematsu T. 2006. SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes. Nat Genet 38: 1278-1288.
-
(2006)
Nat Genet
, vol.38
, pp. 1278-1288
-
-
Cai, S.1
Lee, C.C.2
Kohwi-Shigematsu, T.3
-
18
-
-
2342501365
-
Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization
-
Casolari JM, Brown CR, Komili S,West J, Hieronymus H, Silver PA. 2004. Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization. Cell 117: 427-439.
-
(2004)
Cell
, vol.117
, pp. 427-439
-
-
Casolari, J.M.1
Brown, C.R.2
Komili, S.3
West, J.4
Hieronymus, H.5
Silver, P.A.6
-
19
-
-
84875200698
-
Functional implications of genome topology
-
Cavalli G, Misteli T. 2013. Functional implications of genome topology. Nat Struct Mol Biol 20: 290-299.
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 290-299
-
-
Cavalli, G.1
Misteli, T.2
-
20
-
-
80053558376
-
Genome-wide translocation sequencing reveals mechanisms of chromosome breaks and rearrangements in B cells
-
Chiarle R, Zhang Y, Frock RL, Lewis SM, Molinie B, Ho YJ, Myers DR, Choi VW, Compagno M, Malkin DJ, et al. 2011. Genome-wide translocation sequencing reveals mechanisms of chromosome breaks and rearrangements in B cells. Cell 147: 107-119.
-
(2011)
Cell
, vol.147
, pp. 107-119
-
-
Chiarle, R.1
Zhang, Y.2
Frock, R.L.3
Lewis, S.M.4
Molinie, B.5
Ho, Y.J.6
Myers, D.R.7
Choi, V.W.8
Compagno, M.9
Malkin, D.J.10
-
21
-
-
0020464770
-
Analysis of chromosome positions in the interphase nucleus of Chinese hamster cells by laser-UV-microirradiation experiments
-
Cremer T, Cremer C, Schneider T, Baumann H, Hens L, Kirsch-Volders M. 1982. Analysis of chromosome positions in the interphase nucleus of Chinese hamster cells by laser-UV-microirradiation experiments. Hum Genet 62: 201-209.
-
(1982)
Hum Genet
, vol.62
, pp. 201-209
-
-
Cremer, T.1
Cremer, C.2
Schneider, T.3
Baumann, H.4
Hens, L.5
Kirsch-Volders, M.6
-
22
-
-
0041885232
-
Inheritance of gene density-related higher order chromatin arrangements in normal and tumor cell nuclei
-
Cremer M, Kupper K, Wagler B, Wizelman L, von Hase J J, Weiland Y, Kreja L, Diebold J, Speicher MR, Cremer T. 2003. Inheritance of gene density-related higher order chromatin arrangements in normal and tumor cell nuclei. J Cell Biol 162: 809-820.
-
(2003)
J Cell Biol
, vol.162
, pp. 809-820
-
-
Cremer, M.1
Kupper, K.2
Wagler, B.3
Wizelman, L.4
von Hase, J.J.5
Weiland, Y.6
Kreja, L.7
Diebold, J.8
Speicher, M.R.9
Cremer, T.10
-
23
-
-
0033553877
-
Differences in the localization and morphology of chromosomes in the human nucleus
-
Croft JA, Bridger JM, Boyle S, Perry P, Teague P, Bickmore WA. 1999. Differences in the localization and morphology of chromosomes in the human nucleus. J Cell Biol 145: 1119-1131.
-
(1999)
J Cell Biol
, vol.145
, pp. 1119-1131
-
-
Croft, J.A.1
Bridger, J.M.2
Boyle, S.3
Perry, P.4
Teague, P.5
Bickmore, W.A.6
-
24
-
-
79954510417
-
In the loop: Long range chromatin interactions and gene regulation
-
Dean A. 2011. In the loop: Long range chromatin interactions and gene regulation. Brief Funct Genomics 10: 3-10.
-
(2011)
Brief Funct Genomics
, vol.10
, pp. 3-10
-
-
Dean, A.1
-
25
-
-
79251579996
-
Nuclear lamins
-
Dechat T, Adam SA, Taimen P, Shimi T, Goldman RD. 2010. Nuclear lamins. Cold Spring Harb Perspect Biol 2: a000547.
-
(2010)
Cold Spring Harb Perspect Biol
, vol.2
-
-
Dechat, T.1
Adam, S.A.2
Taimen, P.3
Shimi, T.4
Goldman, R.D.5
-
26
-
-
31344477982
-
The three 'C's of chromosome conformation capture: Controls, controls, controls
-
Dekker J. 2006. The three 'C's of chromosome conformation capture: Controls, controls, controls. Nat Methods 3: 17-21.
-
(2006)
Nat Methods
, vol.3
, pp. 17-21
-
-
Dekker, J.1
-
28
-
-
0042880630
-
Spatial organization of gene expression: The active chromatin hub
-
de LaatW, Grosveld F. 2003. Spatial organization of gene expression: The active chromatin hub. Chromosome Res 11: 447-459.
-
(2003)
Chromosome Res
, vol.11
, pp. 447-459
-
-
de Laat, W.1
Grosveld, F.2
-
29
-
-
77956647538
-
Do chromatin loops provide epigenetic gene expression states?
-
Deng W, Blobel GA. 2010. Do chromatin loops provide epigenetic gene expression states? Curr Opin Genet Dev 20: 548-554.
-
(2010)
Curr Opin Genet Dev
, vol.20
, pp. 548-554
-
-
Deng, W.1
Blobel, G.A.2
-
30
-
-
67651205709
-
Disease-causing 7.4 kb cis-regulatory deletion disrupting conserved non-coding sequences and their interaction with the FOXL2 promotor: Implications for mutation screening
-
D'Haene B, Attanasio C, Beysen D, Dostie J, Lemire E, Bouchard P, Field M, Jones K, Lorenz B, Menten B, et al. 2009. Disease-causing 7.4 kb cis-regulatory deletion disrupting conserved non-coding sequences and their interaction with the FOXL2 promotor: Implications for mutation screening. PLoS Genet 5: e1000522.
-
(2009)
PLoS Genet
, vol.5
-
-
D'Haene, B.1
Attanasio, C.2
Beysen, D.3
Dostie, J.4
Lemire, E.5
Bouchard, P.6
Field, M.7
Jones, K.8
Lorenz, B.9
Menten, B.10
-
31
-
-
84861095603
-
Topological domains in mammalian genomes identified by analysis of chromatin interactions
-
Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y,Hu M, Liu JS, Ren B. 2012. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485: 376-380.
-
(2012)
Nature
, vol.485
, pp. 376-380
-
-
Dixon, J.R.1
Selvaraj, S.2
Yue, F.3
Kim, A.4
Li, Y.5
Shen, Y.6
Hu, M.7
Liu, J.S.8
Ren, B.9
-
32
-
-
67650076211
-
The pluripotency factor Oct4 interacts with Ctcf and also controls X-chromosome pairing and counting
-
Donohoe ME, Silva SS, Pinter SF, Xu N, Lee JT. 2009. The pluripotency factor Oct4 interacts with Ctcf and also controls X-chromosome pairing and counting. Nature 460: 128-132.
-
(2009)
Nature
, vol.460
, pp. 128-132
-
-
Donohoe, M.E.1
Silva, S.S.2
Pinter, S.F.3
Xu, N.4
Lee, J.T.5
-
33
-
-
33749400168
-
Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements
-
Dostie J, Richmond TA, Arnaout RA, Selzer RR, Lee WL, Honan TA, Rubio ED, Krumm A, Lamb J, Nusbaum C, et al. 2006. Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements. Genome Res 16: 1299-1309.
-
(2006)
Genome Res
, vol.16
, pp. 1299-1309
-
-
Dostie, J.1
Richmond, T.A.2
Arnaout, R.A.3
Selzer, R.R.4
Lee, W.L.5
Honan, T.A.6
Rubio, E.D.7
Krumm, A.8
Lamb, J.9
Nusbaum, C.10
-
34
-
-
5444255213
-
The active spatial organization of the β-globin locus requires the transcription factor EKLF
-
Drissen R, Palstra RJ, Gillemans N, Splinter E, Grosveld F, Philipsen S, de Laat W. 2004. The active spatial organization of the β-globin locus requires the transcription factor EKLF. Genes Dev 18: 2485-2490.
-
(2004)
Genes Dev
, vol.18
, pp. 2485-2490
-
-
Drissen, R.1
Palstra, R.J.2
Gillemans, N.3
Splinter, E.4
Grosveld, F.5
Philipsen, S.6
de Laat, W.7
-
36
-
-
2242433534
-
A kinetic framework for a mammalian RNA polymerase in vivo
-
Dundr M, Hoffmann-Rohrer U, Hu Q, Grummt I, Rothblum LI, Phair RD, Misteli T. 2002. A kinetic framework for a mammalian RNA polymerase in vivo. Science 298: 1623-1626.
-
(2002)
Science
, vol.298
, pp. 1623-1626
-
-
Dundr, M.1
Hoffmann-Rohrer, U.2
Hu, Q.3
Grummt, I.4
Rothblum, L.I.5
Phair, R.D.6
Misteli, T.7
-
38
-
-
79955550445
-
A user's guide to the Encyclopedia of DNA Elements
-
ENCODE Project Consortium. 2011. A user's guide to the Encyclopedia of DNA Elements. PLoS Biol 9: e1001046.
-
(2011)
PLoS Biol
, vol.9
-
-
ENCODE Project Consortium1
-
39
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
ENCODE Project Consortium, Bernstein BE, Birney E, Dunham I, Green ED, Gunter C, Snyder M. 2012. An integrated encyclopedia of DNA elements in the human genome. Nature 489: 57-74.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Bernstein, B.E.1
Birney, E.2
Dunham, I.3
Green, E.D.4
Gunter, C.5
Snyder, M.6
-
40
-
-
80052402894
-
Transcription factories and nuclear organization of the genome
-
Eskiw CH, Cope NF, Clay I, Schoenfelder S, Nagano T, Fraser P. 2011. Transcription factories and nuclear organization of the genome. Cold Spring Harb Symp Quant Biol 75: 501-506.
-
(2011)
Cold Spring Harb Symp Quant Biol
, vol.75
, pp. 501-506
-
-
Eskiw, C.H.1
Cope, N.F.2
Clay, I.3
Schoenfelder, S.4
Nagano, T.5
Fraser, P.6
-
41
-
-
85015069067
-
Controlling the double helix
-
Felsenfeld G, Groudine M. 2003. Controlling the double helix. Nature 421: 448-453.
-
(2003)
Nature
, vol.421
, pp. 448-453
-
-
Felsenfeld, G.1
Groudine, M.2
-
42
-
-
41949121084
-
Recruitment to the nuclear periphery can alter expression of genes in human cells
-
Finlan LE, Sproul D, Thomson I, Boyle S, Kerr E, Perry P, Ylstra B, Chubb JR, Bickmore WA. 2008. Recruitment to the nuclear periphery can alter expression of genes in human cells. PLoS Genet 4: e1000039.
-
(2008)
PLoS Genet
, vol.4
-
-
Finlan, L.E.1
Sproul, D.2
Thomson, I.3
Boyle, S.4
Kerr, E.5
Perry, P.6
Ylstra, B.7
Chubb, J.R.8
Bickmore, W.A.9
-
43
-
-
70449103609
-
An oestrogen-receptor-α-bound human chromatin interactome
-
Fullwood MJ, Liu MH, Pan YF, Liu J, Xu H, Mohamed YB, Orlov YL, Velkov S, Ho A, Mei PH, et al. 2009. An oestrogen-receptor-α-bound human chromatin interactome. Nature 462: 58-64.
-
(2009)
Nature
, vol.462
, pp. 58-64
-
-
Fullwood, M.J.1
Liu, M.H.2
Pan, Y.F.3
Liu, J.4
Xu, H.5
Mohamed, Y.B.6
Orlov, Y.L.7
Velkov, S.8
Ho, A.9
Mei, P.H.10
-
44
-
-
34447510932
-
Local and cis effects of the H element on expression of odorant receptor genes in mouse
-
Fuss SH, Omura M, Mombaerts P. 2007. Local and cis effects of the H element on expression of odorant receptor genes in mouse. Cell 130: 373-384.
-
(2007)
Cell
, vol.130
, pp. 373-384
-
-
Fuss, S.H.1
Omura, M.2
Mombaerts, P.3
-
46
-
-
77955235716
-
Cell-type-specific long-range looping interactions identify distant regulatory elements of the CFTR gene
-
Gheldof N, Smith EM, Tabuchi TM, Koch CM, Dunham I, Stamatoyannopoulos JA, Dekker J. 2010. Cell-type-specific long-range looping interactions identify distant regulatory elements of the CFTR gene. Nucleic Acids Res 38: 4325-4336.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 4325-4336
-
-
Gheldof, N.1
Smith, E.M.2
Tabuchi, T.M.3
Koch, C.M.4
Dunham, I.5
Stamatoyannopoulos, J.A.6
Dekker, J.7
-
47
-
-
84876838711
-
The hierarchy of the 3D genome
-
Gibcus JH, Dekker J. 2013. The hierarchy of the 3D genome.Mol Cell 49: 773-782.
-
(2013)
Mol Cell
, vol.49
, pp. 773-782
-
-
Gibcus, J.H.1
Dekker, J.2
-
49
-
-
45149084413
-
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
-
Guelen L, Pagie L, Brasset E, Meuleman W, Faza MB, Talhout W, Eussen BH, de Klein A,Wessels L, de LaatW, et al. 2008. Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions. Nature 453: 948-951.
-
(2008)
Nature
, vol.453
, pp. 948-951
-
-
Guelen, L.1
Pagie, L.2
Brasset, E.3
Meuleman, W.4
Faza, M.B.5
Talhout, W.6
Eussen, B.H.7
de Klein, A.8
Wessels, L.9
de Laat, W.10
-
50
-
-
80054702528
-
Two forms of loops generate the chromatin conformation of the immunoglobulin heavy-chain gene locus
-
Guo C, Gerasimova T, Hao H, Ivanova I, Chakraborty T, Selimyan R, Oltz EM, Sen R. 2011. Two forms of loops generate the chromatin conformation of the immunoglobulin heavy-chain gene locus. Cell 147: 332-343.
-
(2011)
Cell
, vol.147
, pp. 332-343
-
-
Guo, C.1
Gerasimova, T.2
Hao, H.3
Ivanova, I.4
Chakraborty, T.5
Selimyan, R.6
Oltz, E.M.7
Sen, R.8
-
51
-
-
67650997080
-
Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus
-
Hadjur S,Williams LM, Ryan NK, Cobb BS, Sexton T, Fraser P, Fisher AG, Merkenschlager M. 2009. Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus. Nature 460: 410-413.
-
(2009)
Nature
, vol.460
, pp. 410-413
-
-
Hadjur, S.1
Williams, L.M.2
Ryan, N.K.3
Cobb, B.S.4
Sexton, T.5
Fraser, P.6
Fisher, A.G.7
Merkenschlager, M.8
-
52
-
-
50049112678
-
Clustering of yeast tRNA genes is mediated by specific association of condensin with tRNA gene transcription complexes
-
Haeusler RA, Pratt-Hyatt M, Good PD, Gipson TA, Engelke DR. 2008. Clustering of yeast tRNA genes is mediated by specific association of condensin with tRNA gene transcription complexes. Genes Dev 22: 2204-2214.
-
(2008)
Genes Dev
, vol.22
, pp. 2204-2214
-
-
Haeusler, R.A.1
Pratt-Hyatt, M.2
Good, P.D.3
Gipson, T.A.4
Engelke, D.R.5
-
53
-
-
84859910607
-
Chromosome conformation techniques
-
Hakim O, Misteli T. 2012. Chromosome conformation techniques. Cell 148: 1068.
-
(2012)
Cell
, vol.148
, pp. 1068
-
-
Hakim, O.1
Misteli, T.2
-
54
-
-
84859474968
-
DNA damage defines sites of recurrent chromosomal translocations in B lymphocytes
-
Hakim O, Resch W, Yamane A, Klein I, Kieffer-Kwon KR, Jankovic M, Oliveira T, Bothmer A,Voss TC, Ansarah-Sobrinho C, et al. 2012. DNA damage defines sites of recurrent chromosomal translocations in B lymphocytes. Nature 484: 69-74.
-
(2012)
Nature
, vol.484
, pp. 69-74
-
-
Hakim, O.1
Resch, W.2
Yamane, A.3
Klein, I.4
Kieffer-Kwon, K.R.5
Jankovic, M.6
Oliveira, T.7
Bothmer, A.8
Voss, T.C.9
Ansarah-Sobrinho, C.10
-
55
-
-
0027499230
-
Visualization of focal sites of transcription within human nuclei
-
Jackson DA, Hassan AB, Errington RJ, Cook PR. 1993. Visualization of focal sites of transcription within human nuclei. EMBO J 12: 1059- 1065.
-
(1993)
EMBO J
, vol.12
, pp. 1059-1065
-
-
Jackson, D.A.1
Hassan, A.B.2
Errington, R.J.3
Cook, P.R.4
-
56
-
-
77957139539
-
Mediator and cohesin connect gene expression and chromatin architecture
-
Kagey MH, Newman JJ, Bilodeau S, Zhan Y, Orlando DA, van Berkum NL, Ebmeier CC, Goossens J, Rahl PB, Levine SS, et al. 2010. Mediator and cohesin connect gene expression and chromatin architecture. Nature 467: 430-435.
-
(2010)
Nature
, vol.467
, pp. 430-435
-
-
Kagey, M.H.1
Newman, J.J.2
Bilodeau, S.3
Zhan, Y.4
Orlando, D.A.5
van Berkum, N.L.6
Ebmeier, C.C.7
Goossens, J.8
Rahl, P.B.9
Levine, S.S.10
-
57
-
-
84862917808
-
Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
-
Kalhor R, Tjong H, Jayahilaka N, Alber F, Chen L. 2011. Genome architectures revealed by tethered chromosome conformation capture and population-based modeling. Nat Biotechnol 30: 90-98.
-
(2011)
Nat Biotechnol
, vol.30
, pp. 90-98
-
-
Kalhor, R.1
Tjong, H.2
Jayahilaka, N.3
Alber, F.4
Chen, L.5
-
58
-
-
75749117571
-
Nucleoporins directly stimulate expression of developmental and cell-cycle genes inside the nucleoplasm
-
Kalverda B, Pickersgill H, Shloma VV, Fornerod M. 2010. Nucleoporins directly stimulate expression of developmental and cell-cycle genes inside the nucleoplasm. Cell 140: 360-371.
-
(2010)
Cell
, vol.140
, pp. 360-371
-
-
Kalverda, B.1
Pickersgill, H.2
Shloma, V.V.3
Fornerod, M.4
-
59
-
-
0024265336
-
A Drosophila rRNA gene located in euchromatin is active in transcription and nucleolus formation
-
Karpen GH, Schaefer JE, Laird CD. 1988. A Drosophila rRNA gene located in euchromatin is active in transcription and nucleolus formation. Genes Dev 2: 1745-1763.
-
(1988)
Genes Dev
, vol.2
, pp. 1745-1763
-
-
Karpen, G.H.1
Schaefer, J.E.2
Laird, C.D.3
-
60
-
-
33947201809
-
Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome
-
Kim TH, Abdullaev ZK, Smith AD, Ching KA, Loukinov DI, Green RD, Zhang MQ, Lobanenkov VV, Ren B. 2007. Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome. Cell 128: 1231-1245.
-
(2007)
Cell
, vol.128
, pp. 1231-1245
-
-
Kim, T.H.1
Abdullaev, Z.K.2
Smith, A.D.3
Ching, K.A.4
Loukinov, D.I.5
Green, R.D.6
Zhang, M.Q.7
Lobanenkov, V.V.8
Ren, B.9
-
61
-
-
70350672529
-
BRG1 directly regulates nucleosome structure and chromatin looping of the α globin locus to activate transcription
-
Kim SI, Bresnick EH, Bultman SJ. 2009a. BRG1 directly regulates nucleosome structure and chromatin looping of the α globin locus to activate transcription. Nucleic Acids Res 37: 6019-6027.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 6019-6027
-
-
Kim, S.I.1
Bresnick, E.H.2
Bultman, S.J.3
-
62
-
-
60549103722
-
BRG1 requirement for long-range interaction of a locus control region with a downstream promoter
-
Kim SI, Bultman SJ, Kiefer CM, Dean A, Bresnick EH. 2009b. BRG1 requirement for long-range interaction of a locus control region with a downstream promoter. Proc Natl Acad Sci 106: 2259-2264.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 2259-2264
-
-
Kim, S.I.1
Bultman, S.J.2
Kiefer, C.M.3
Dean, A.4
Bresnick, E.H.5
-
63
-
-
77954818442
-
Genome-nuclear lamina interactions and gene regulation
-
Kind J, van Steensel B. 2010. Genome-nuclear lamina interactions and gene regulation. Curr Opin Cell Biol 22: 320-325.
-
(2010)
Curr Opin Cell Biol
, vol.22
, pp. 320-325
-
-
Kind, J.1
van Steensel, B.2
-
64
-
-
80053502216
-
Translocation-capture sequencing reveals the extent and nature of chromosomal rearrangements in B lymphocytes
-
Klein IA, Resch W, Jankovic M, Oliveira T, Yamane A, Nakahashi H, Di Virgilio M, Bothmer A, Nussenzweig A, Robbiani DF, et al. 2011. Translocation-capture sequencing reveals the extent and nature of chromosomal rearrangements in B lymphocytes. Cell 147: 95-106.
-
(2011)
Cell
, vol.147
, pp. 95-106
-
-
Klein, I.A.1
Resch, W.2
Jankovic, M.3
Oliveira, T.4
Yamane, A.5
Nakahashi, H.6
Di Virgilio, M.7
Bothmer, A.8
Nussenzweig, A.9
Robbiani, D.F.10
-
65
-
-
0037023361
-
Subnuclear compartmentalization of immunoglobulin loci during lymphocyte development
-
Kosak ST, Skok JA,Medina KL, Riblet R, Le Beau MM, Fisher AG, Singh H. 2002. Subnuclear compartmentalization of immunoglobulin loci during lymphocyte development. Science 296: 158-162.
-
(2002)
Science
, vol.296
, pp. 158-162
-
-
Kosak, S.T.1
Skok, J.A.2
Medina, K.L.3
Riblet, R.4
Le Beau, M.M.5
Fisher, A.G.6
Singh, H.7
-
66
-
-
38349043904
-
A genetic locus targeted to the nuclear periphery in living cells maintains its transcriptional competence
-
Kumaran RI, Spector DL. 2008. A genetic locus targeted to the nuclear periphery in living cells maintains its transcriptional competence. J Cell Biol 180: 51-65.
-
(2008)
J Cell Biol
, vol.180
, pp. 51-65
-
-
Kumaran, R.I.1
Spector, D.L.2
-
67
-
-
33846283384
-
Dynamic genome architecture in the nuclear space: Regulation of gene expression in three dimensions
-
Lanctot C, Cheutin T, Cremer M, Cavalli G, Cremer T. 2007. Dynamic genome architecture in the nuclear space: Regulation of gene expression in three dimensions. Nat Rev Genet 8: 104-115.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 104-115
-
-
Lanctot, C.1
Cheutin, T.2
Cremer, M.3
Cavalli, G.4
Cremer, T.5
-
68
-
-
34848825691
-
Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex
-
Lanzuolo C, Roure V, Dekker J, Bantignies F, Orlando V. 2007. Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex. Nat Cell Biol 9: 1167-1174.
-
(2007)
Nat Cell Biol
, vol.9
, pp. 1167-1174
-
-
Lanzuolo, C.1
Roure, V.2
Dekker, J.3
Bantignies, F.4
Orlando, V.5
-
69
-
-
79953163378
-
Chromatin higher-order structures and gene regulation
-
Li G, Reinberg D. 2011. Chromatin higher-order structures and gene regulation. Curr Opin Genet Dev 21: 175-186.
-
(2011)
Curr Opin Genet Dev
, vol.21
, pp. 175-186
-
-
Li, G.1
Reinberg, D.2
-
70
-
-
77953191060
-
ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing
-
Li G, Fullwood MJ, Xu H,Mulawadi FH, Velkov S, Vega V, Ariyaratne PN, Mohamed YB, Ooi HS, Tennakoon C, et al. 2010. ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing. Genome Biol 11: R22.
-
(2010)
Genome Biol
, vol.11
-
-
Li, G.1
Fullwood, M.J.2
Xu, H.3
Mulawadi, F.H.4
Velkov, S.5
Vega, V.6
Ariyaratne, P.N.7
Mohamed, Y.B.8
Ooi, H.S.9
Tennakoon, C.10
-
71
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden E, van Berkum NL,Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR, Sabo PJ, Dorschner MO, et al. 2009. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326: 289-293.
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
Telling, A.6
Amit, I.7
Lajoie, B.R.8
Sabo, P.J.9
Dorschner, M.O.10
-
72
-
-
77957377062
-
Interaction of a DNA zip code with the nuclear pore complex promotes H2A.Z incorporation and INO1 transcriptional memory
-
Light WH, Brickner DG, Brand VR, Brickner JH. 2010. Interaction of a DNA zip code with the nuclear pore complex promotes H2A.Z incorporation and INO1 transcriptional memory. Mol Cell 40: 112-125.
-
(2010)
Mol Cell
, vol.40
, pp. 112-125
-
-
Light, W.H.1
Brickner, D.G.2
Brand, V.R.3
Brickner, J.H.4
-
73
-
-
71249101060
-
Nuclear receptor-induced chromosomal proximity and DNA breaks underlie specific translocations in cancer
-
Lin C, Yang L, Tanasa B,Hutt K, Ju BG, Ohgi K, Zhang J, RoseDW, FuXD, Glass CK, et al. 2009. Nuclear receptor-induced chromosomal proximity and DNA breaks underlie specific translocations in cancer. Cell 139: 1069-1083.
-
(2009)
Cell
, vol.139
, pp. 1069-1083
-
-
Lin, C.1
Yang, L.2
Tanasa, B.3
Hutt, K.4
Ju, B.G.5
Ohgi, K.6
Zhang, J.7
Rose, D.W.8
Fu, X.D.9
Glass, C.K.10
-
75
-
-
33746228114
-
Interchromosomal interactions and olfactory receptor choice
-
Lomvardas S, Barnea G, Pisapia DJ, Mendelsohn M, Kirkland J, Axel R. 2006. Interchromosomal interactions and olfactory receptor choice. Cell 126: 403-413.
-
(2006)
Cell
, vol.126
, pp. 403-413
-
-
Lomvardas, S.1
Barnea, G.2
Pisapia, D.J.3
Mendelsohn, M.4
Kirkland, J.5
Axel, R.6
-
76
-
-
77449121614
-
Target-enrichment strategies for next-generation sequencing
-
Mamanova L, Coffey AJ, Scott CE, Kozarewa I, Turner EH, Kumar A, Howard E, Shendure J, Turner DJ. 2010. Target-enrichment strategies for next-generation sequencing. Nat Methods 7: 111-118.
-
(2010)
Nat Methods
, vol.7
, pp. 111-118
-
-
Mamanova, L.1
Coffey, A.J.2
Scott, C.E.3
Kozarewa, I.4
Turner, E.H.5
Kumar, A.6
Howard, E.7
Shendure, J.8
Turner, D.J.9
-
77
-
-
70849135782
-
Induced chromosomal proximity and gene fusions in prostate cancer
-
Mani RS, Tomlins SA, Callahan K, Ghosh A, Nyati MK, Varambally S, Palanisamy N, Chinnaiyan AM. 2009. Induced chromosomal proximity and gene fusions in prostate cancer. Science 326: 1230.
-
(2009)
Science
, vol.326
, pp. 1230
-
-
Mani, R.S.1
Tomlins, S.A.2
Callahan, K.3
Ghosh, A.4
Nyati, M.K.5
Varambally, S.6
Palanisamy, N.7
Chinnaiyan, A.M.8
-
78
-
-
79955540235
-
Live-cell chromosome dynamics and outcome of X chromosome pairing events during ES cell differentiation
-
Masui O, Bonnet I, Le Baccon P, Brito I, Pollex T, Murphy N, Hupe P, Barillot E, Belmont AS, Heard E. 2011. Live-cell chromosome dynamics and outcome of X chromosome pairing events during ES cell differentiation. Cell 145: 447-458.
-
(2011)
Cell
, vol.145
, pp. 447-458
-
-
Masui, O.1
Bonnet, I.2
Le Baccon, P.3
Brito, I.4
Pollex, T.5
Murphy, N.6
Hupe, P.7
Barillot, E.8
Belmont, A.S.9
Heard, E.10
-
79
-
-
65249165421
-
Gene deregulation and spatial genome reorganization near breakpoints prior to formation of translocations in anaplastic large cell lymphoma
-
Mathas S, Kreher S,Meaburn KJ, Johrens K, Lamprecht B, Assaf C, Sterry W, Kadin ME, Daibata M, Joos S, et al. 2009. Gene deregulation and spatial genome reorganization near breakpoints prior to formation of translocations in anaplastic large cell lymphoma. Proc Natl Acad Sci 106: 5831-5836.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 5831-5836
-
-
Mathas, S.1
Kreher, S.2
Meaburn, K.J.3
Johrens, K.4
Lamprecht, B.5
Assaf, C.6
Sterry, W.7
Kadin, M.E.8
Daibata, M.9
Joos, S.10
-
80
-
-
84873349707
-
Correlated alterations in genome organization, histone methylation, and DNA-lamin A/C interactions in Hutchinson-Gilford progeria syndrome
-
McCord RP, Nazario-Toole A, Zhang H, Chines PS, Zhan Y, Erdos MR, Collins FS, Dekker J, Cao K. 2013. Correlated alterations in genome organization, histone methylation, and DNA-lamin A/C interactions in Hutchinson-Gilford progeria syndrome. Genome Res 23: 260-269.
-
(2013)
Genome Res
, vol.23
, pp. 260-269
-
-
McCord, R.P.1
Nazario-Toole, A.2
Zhang, H.3
Chines, P.S.4
Zhan, Y.5
Erdos, M.R.6
Collins, F.S.7
Dekker, J.8
Cao, K.9
-
81
-
-
55849109584
-
The epigenetics of rRNA genes: From molecular to chromosome biology
-
McStay B, Grummt I. 2008. The epigenetics of rRNA genes: From molecular to chromosome biology. Annu Rev Cell Dev Biol 24: 131-157.
-
(2008)
Annu Rev Cell Dev Biol
, vol.24
, pp. 131-157
-
-
McStay, B.1
Grummt, I.2
-
82
-
-
33846535507
-
Cell biology: Chromosome territories
-
Meaburn KJ, Misteli T. 2007. Cell biology: Chromosome territories. Nature 445: 379-781.
-
(2007)
Nature
, vol.445
, pp. 379-781
-
-
Meaburn, K.J.1
Misteli, T.2
-
83
-
-
38349080953
-
Locus-specific and activity-independent gene repositioning during early tumorigenesis
-
Meaburn KJ, Misteli T. 2008. Locus-specific and activity-independent gene repositioning during early tumorigenesis. J Cell Biol 180: 39-50.
-
(2008)
J Cell Biol
, vol.180
, pp. 39-50
-
-
Meaburn, K.J.1
Misteli, T.2
-
84
-
-
77950920142
-
The spatial dynamics of tissue-specific promoters during C. elegans development
-
Meister P, Towbin BD, Pike BL, Ponti A, Gasser SM. 2010. The spatial dynamics of tissue-specific promoters during C. elegans development. Genes Dev 24: 766-782.
-
(2010)
Genes Dev
, vol.24
, pp. 766-782
-
-
Meister, P.1
Towbin, B.D.2
Pike, B.L.3
Ponti, A.4
Gasser, S.M.5
-
85
-
-
33847077659
-
Beyond the sequence: Cellular organization of genome function
-
Misteli T. 2007. Beyond the sequence: Cellular organization of genome function. Cell 128: 787-800.
-
(2007)
Cell
, vol.128
, pp. 787-800
-
-
Misteli, T.1
-
86
-
-
78349288865
-
Higher-order genome organization in human disease
-
Misteli T. 2010. Higher-order genome organization in human disease. Cold Spring Harb Perspect Biol 2: a000794.
-
(2010)
Cold Spring Harb Perspect Biol
, vol.2
-
-
Misteli, T.1
-
87
-
-
79951821740
-
The inner life of the genome
-
Misteli T. 2011. The inner life of the genome. Sci Am 304: 66-73.
-
(2011)
Sci Am
, vol.304
, pp. 66-73
-
-
Misteli, T.1
-
88
-
-
62849083222
-
The emerging role of nuclear architecture in DNA repair and genome maintenance
-
Misteli T, Soutoglou E. 2009. The emerging role of nuclear architecture in DNA repair and genome maintenance. Nat Rev Mol Cell Biol 10: 243-254.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, pp. 243-254
-
-
Misteli, T.1
Soutoglou, E.2
-
89
-
-
81855227640
-
A regulatory archipelago controls Hox genes transcription in digits
-
Montavon T, Soshnikova N, Mascrez B, Joye E, Thevenet L, Splinter E, de Laat W, Spitz F, Duboule D. 2011. A regulatory archipelago controls Hox genes transcription in digits. Cell 147: 1132-1145.
-
(2011)
Cell
, vol.147
, pp. 1132-1145
-
-
Montavon, T.1
Soshnikova, N.2
Mascrez, B.3
Joye, E.4
Thevenet, L.5
Splinter, E.6
de Laat, W.7
Spitz, F.8
Duboule, D.9
-
90
-
-
84856922144
-
Barrier-to-autointegration factor influences specific histone modifications
-
Montes de Oca R, Andreassen PR, Wilson KL. 2011. Barrier-to-autointegration factor influences specific histone modifications. Nucleus 2: 580-590.
-
(2011)
Nucleus
, vol.2
, pp. 580-590
-
-
Montes de Oca, R.1
Andreassen, P.R.2
Wilson, K.L.3
-
91
-
-
0033082237
-
Core promoter elements can regulate transcription on a separate chromosome in trans
-
Morris JR, Geyer PK,Wu CT. 1999. Core promoter elements can regulate transcription on a separate chromosome in trans. Genes Dev 13: 253- 258.
-
(1999)
Genes Dev
, vol.13
, pp. 253-258
-
-
Morris, J.R.1
Geyer, P.K.2
Wu, C.T.3
-
92
-
-
0033557569
-
The nuclear topography of ABL, BCR, PML, and RARalpha genes: Evidence for gene proximity in specific phases of the cell cycle and stages of hematopoietic differentiation
-
Neves H, Ramos C, da Silva MG, Parreira A, Parreira L. 1999. The nuclear topography of ABL, BCR, PML, and RARalpha genes: Evidence for gene proximity in specific phases of the cell cycle and stages of hematopoietic differentiation. Blood 93: 1197-1207.
-
(1999)
Blood
, vol.93
, pp. 1197-1207
-
-
Neves, H.1
Ramos, C.2
da Silva, M.G.3
Parreira, A.4
Parreira, L.5
-
93
-
-
79960980390
-
Variegated gene expression caused by cell-specific long-range DNA interactions
-
Noordermeer D, deWit E, Klous P, van deWerken H, Simonis M, Lopez-Jones M, Eussen B, de Klein A, Singer RH, de LaatW. 2011. Variegated gene expression caused by cell-specific long-range DNA interactions. Nat Cell Biol 13: 944-951.
-
(2011)
Nat Cell Biol
, vol.13
, pp. 944-951
-
-
Noordermeer, D.1
deWit, E.2
Klous, P.3
van deWerken, H.4
Simonis, M.5
Lopez-Jones, M.6
Eussen, B.7
de Klein, A.8
Singer, R.H.9
de Laat, W.10
-
94
-
-
84861100147
-
Spatial partitioning of the regulatory landscape of the X-inactivation centre
-
Nora EP, Lajoie BR, Schulz EG, Giorgetti L, Okamoto I, Servant N, Piolot T, van Berkum NL,Meisig J, Sedat J, et al. 2012. Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature 485: 381-385.
-
(2012)
Nature
, vol.485
, pp. 381-385
-
-
Nora, E.P.1
Lajoie, B.R.2
Schulz, E.G.3
Giorgetti, L.4
Okamoto, I.5
Servant, N.6
Piolot, T.7
van Berkum, N.L.8
Meisig, J.9
Sedat, J.10
-
95
-
-
5444243359
-
Active genes dynamcially colocalize to shared sites of ongoing transcription
-
Osborne CS, Chakalova L, Brown KE, Carter D, Horton A, Debrand E, Goyenechea B, Mitchell JA, Lopes S, Reik W, et al. 2004. Active genes dynamcially colocalize to shared sites of ongoing transcription. Nat Genet 36: 1065-1071.
-
(2004)
Nat Genet
, vol.36
, pp. 1065-1071
-
-
Osborne, C.S.1
Chakalova, L.2
Brown, K.E.3
Carter, D.4
Horton, A.5
Debrand, E.6
Goyenechea, B.7
Mitchell, J.A.8
Lopes, S.9
Reik, W.10
-
96
-
-
34548210885
-
Myc dynamically and preferentially relocates to a transcription factory occupied by Igh
-
Osborne CS, Chakalova L, Mitchell JA, Horton A,Wood AL, Bolland DJ, Corcoran AE, Fraser P. 2007. Myc dynamically and preferentially relocates to a transcription factory occupied by Igh. PLoS Biol 5: e192.
-
(2007)
PLoS Biol
, vol.5
-
-
Osborne, C.S.1
Chakalova, L.2
Mitchell, J.A.3
Horton, A.4
Wood, A.L.5
Bolland, D.J.6
Corcoran, A.E.7
Fraser, P.8
-
97
-
-
73949111636
-
Intronic enhancers coordinate epithelial-specific looping of the active CFTR locus
-
Ott CJ, Blackledge NP, Kerschner JL, Leir SH, Crawford GE, Cotton CU, Harris A. 2009. Intronic enhancers coordinate epithelial-specific looping of the active CFTR locus. Proc Natl Acad Sci 106: 19934-19939.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 19934-19939
-
-
Ott, C.J.1
Blackledge, N.P.2
Kerschner, J.L.3
Leir, S.H.4
Crawford, G.E.5
Cotton, C.U.6
Harris, A.7
-
98
-
-
70649100110
-
Effects of chromosomal rearrangements on transvection at the yellow gene of Drosophila melanogaster
-
Ou SA, Chang E, Lee S, So K, Wu CT, Morris JR. 2009. Effects of chromosomal rearrangements on transvection at the yellow gene of Drosophila melanogaster. Genetics 183: 483-496.
-
(2009)
Genetics
, vol.183
, pp. 483-496
-
-
Ou, S.A.1
Chang, E.2
Lee, S.3
So, K.4
Wu, C.T.5
Morris, J.R.6
-
99
-
-
0141730403
-
The β-globin nuclear compartment in development and erythroid differentiation
-
Palstra RJ, Tolhuis B, Splinter E, Nijmeijer R, Grosveld F, de LaatW. 2003. The β-globin nuclear compartment in development and erythroid differentiation. Nat Genet 35: 190-194.
-
(2003)
Nat Genet
, vol.35
, pp. 190-194
-
-
Palstra, R.J.1
Tolhuis, B.2
Splinter, E.3
Nijmeijer, R.4
Grosveld, F.5
de Laat, W.6
-
100
-
-
77954814120
-
Genome architecture and the role of transcription
-
Papantonis A, Cook PR. 2010. Genome architecture and the role of transcription. Curr Opin Cell Biol 22: 271-276.
-
(2010)
Curr Opin Cell Biol
, vol.22
, pp. 271-276
-
-
Papantonis, A.1
Cook, P.R.2
-
101
-
-
77955047663
-
Active RNA polymerases: Mobile or immobile molecular machines?
-
Papantonis A, Larkin JD, Wada Y, Ohta Y, Ihara S, Kodama T, Cook PR. 2011. Active RNA polymerases: Mobile or immobile molecular machines? PLoS Biol 8: e1000419.
-
(2011)
PLoS Biol
, vol.8
-
-
Papantonis, A.1
Larkin, J.D.2
Wada, Y.3
Ohta, Y.4
Ihara, S.5
Kodama, T.6
Cook, P.R.7
-
102
-
-
0036795327
-
Conservation of relative chromosome positioning in normal and cancer cells
-
Parada L,McQueen P,Munson P, Misteli T. 2002. Conservation of relative chromosome positioning in normal and cancer cells. Curr Biol 12: 1692.
-
(2002)
Curr Biol
, vol.12
, pp. 1692
-
-
Parada, L.1
McQueen, P.2
Munson, P.3
Misteli, T.4
-
103
-
-
0041346000
-
An uncertainty principle in chromosome positioning
-
Parada LA, Roix JJ, Misteli T. 2003. An uncertainty principle in chromosome positioning. Trends Cell Biol 13: 393-396.
-
(2003)
Trends Cell Biol
, vol.13
, pp. 393-396
-
-
Parada, L.A.1
Roix, J.J.2
Misteli, T.3
-
106
-
-
67549119096
-
CTCF: Master weaver of the genome
-
Phillips JE, Corces VG. 2009. CTCF: Master weaver of the genome. Cell 137: 1194-1211.
-
(2009)
Cell
, vol.137
, pp. 1194-1211
-
-
Phillips, J.E.1
Corces, V.G.2
-
107
-
-
77956276464
-
TRNAbiology charges to the front
-
Phizicky EM, Hopper AK. 2010. tRNAbiology charges to the front. Genes Dev 24: 1832-1860.
-
(2010)
Genes Dev
, vol.24
, pp. 1832-1860
-
-
Phizicky, E.M.1
Hopper, A.K.2
-
108
-
-
33748289518
-
Characterization of the Drosophila melanogaster genome at the nuclear lamina
-
Pickersgill H, Kalverda B, deWit E, TalhoutW, Fornerod M, van Steensel B. 2006. Characterization of the Drosophila melanogaster genome at the nuclear lamina. Nat Genet 38: 1005-1014.
-
(2006)
Nat Genet
, vol.38
, pp. 1005-1014
-
-
Pickersgill, H.1
Kalverda, B.2
deWit, E.3
Talhout, W.4
Fornerod, M.5
van Steensel, B.6
-
109
-
-
79952370251
-
On emerging nuclear order
-
Rajapakse I, Groudine M. 2011. On emerging nuclear order. J Cell Biol 192: 711-721.
-
(2011)
J Cell Biol
, vol.192
, pp. 711-721
-
-
Rajapakse, I.1
Groudine, M.2
-
110
-
-
40749122641
-
Transcriptional repression mediated by repositioning of genes to the nuclear lamina
-
Reddy KL, Zullo JM, Bertolino E, Singh H. 2008. Transcriptional repression mediated by repositioning of genes to the nuclear lamina. Nature 452: 243-247.
-
(2008)
Nature
, vol.452
, pp. 243-247
-
-
Reddy, K.L.1
Zullo, J.M.2
Bertolino, E.3
Singh, H.4
-
111
-
-
0038054340
-
Spatial proximity of translocation-prone gene loci in human lymphomas
-
Roix JJ, McQueen PG, Munson PJ, Parada LA, Misteli T. 2003. Spatial proximity of translocation-prone gene loci in human lymphomas. Nat Genet 34: 287-291.
-
(2003)
Nat Genet
, vol.34
, pp. 287-291
-
-
Roix, J.J.1
McQueen, P.G.2
Munson, P.J.3
Parada, L.A.4
Misteli, T.5
-
112
-
-
79957864084
-
Chromatin globules: A common motif of higher order chromosome structure?
-
Sanyal A, BauD,Marti-Renom MA, Dekker J. 2011. Chromatin globules: A common motif of higher order chromosome structure? Curr Opin Cell Biol 23: 325-331.
-
(2011)
Curr Opin Cell Biol
, vol.23
, pp. 325-331
-
-
Sanyal, A.1
Bau, D.2
Marti-Renom, M.A.3
Dekker, J.4
-
113
-
-
84865800494
-
The long-range interaction landscape of gene promoters
-
Sanyal A, Lajoie BR, Jain G, Dekker J. 2012. The long-range interaction landscape of gene promoters. Nature 489: 109-113.
-
(2012)
Nature
, vol.489
, pp. 109-113
-
-
Sanyal, A.1
Lajoie, B.R.2
Jain, G.3
Dekker, J.4
-
114
-
-
0037447160
-
The β-globin locus control region (LCR) functions primarily by enhancing the transition from transcription initiation to elongation
-
Sawado T, Halow J, Bender MA, Groudine M. 2003. The β-globin locus control region (LCR) functions primarily by enhancing the transition from transcription initiation to elongation. Genes Dev 17: 1009-1018.
-
(2003)
Genes Dev
, vol.17
, pp. 1009-1018
-
-
Sawado, T.1
Halow, J.2
Bender, M.A.3
Groudine, M.4
-
115
-
-
43149124203
-
Lamin A-dependent misregulation of adult stem cells associated with accelerated ageing
-
Scaffidi P, Misteli T. 2008. Lamin A-dependent misregulation of adult stem cells associated with accelerated ageing. Nat Cell Biol 10: 452- 459.
-
(2008)
Nat Cell Biol
, vol.10
, pp. 452-459
-
-
Scaffidi, P.1
Misteli, T.2
-
116
-
-
77952242784
-
The transcriptional interactome: Gene expression in 3D
-
Schoenfelder S, Clay I, Fraser P. 2010a. The transcriptional interactome: Gene expression in 3D. Curr Opin Genet Dev 20: 127-133.
-
(2010)
Curr Opin Genet Dev
, vol.20
, pp. 127-133
-
-
Schoenfelder, S.1
Clay, I.2
Fraser, P.3
-
117
-
-
73349090560
-
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
-
Schoenfelder S, Sexton T, Chakalova L, Cope NF, Horton A, Andrews S, Kurukuti S, Mitchell JA, Umlauf D, Dimitrova DS, et al. 2010b. Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells. Nat Genet 42: 53-61.
-
(2010)
Nat Genet
, vol.42
, pp. 53-61
-
-
Schoenfelder, S.1
Sexton, T.2
Chakalova, L.3
Cope, N.F.4
Horton, A.5
Andrews, S.6
Kurukuti, S.7
Mitchell, J.A.8
Umlauf, D.9
Dimitrova, D.S.10
-
118
-
-
84856747483
-
Three-dimensional folding and functional organization principles of the Drosophila genome
-
Sexton T, Yaffe E, Kenigsberg E, Bantignies F, Leblanc B, Hoichman M, Parrinello H, Tanay A, Cavalli G. 2012. Three-dimensional folding and functional organization principles of the Drosophila genome. Cell 148: 458-472.
-
(2012)
Cell
, vol.148
, pp. 458-472
-
-
Sexton, T.1
Yaffe, E.2
Kenigsberg, E.3
Bantignies, F.4
Leblanc, B.5
Hoichman, M.6
Parrinello, H.7
Tanay, A.8
Cavalli, G.9
-
119
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
Shen Y, Yue F,McCleary DF, Ye Z, Edsall L,Kuan S,WagnerU, Dixon J, Lee L, LobanenkovVV, et al. 2012. A map of the cis-regulatory sequences in the mouse genome. Nature 488: 116-120.
-
(2012)
Nature
, vol.488
, pp. 116-120
-
-
Shen, Y.1
Yue, F.2
McCleary, D.F.3
Ye, Z.4
Edsall, L.5
Kuan, S.6
Wagner, U.7
Dixon, J.8
Lee, L.9
Lobanenkov, V.V.10
-
120
-
-
33750212321
-
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture- on-chip (4C)
-
Simonis M, Klous P, Splinter E, Moshkin Y, Willemsen R, de Wit E, van Steensel B, de LaatW. 2006. Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture- on-chip (4C). Nat Genet 38: 1348-1354.
-
(2006)
Nat Genet
, vol.38
, pp. 1348-1354
-
-
Simonis, M.1
Klous, P.2
Splinter, E.3
Moshkin, Y.4
Willemsen, R.5
de Wit, E.6
van Steensel, B.7
de Laat, W.8
-
121
-
-
34447574977
-
Positional stability of single double-strand breaks in mammalian cells
-
Soutoglou E, Dorn JF, Sengupta K, Jasin M, Nussenzweig A, Ried T, Danuser G, Misteli T. 2007. Positional stability of single double-strand breaks in mammalian cells. Nat Cell Biol 9: 675-682.
-
(2007)
Nat Cell Biol
, vol.9
, pp. 675-682
-
-
Soutoglou, E.1
Dorn, J.F.2
Sengupta, K.3
Jasin, M.4
Nussenzweig, A.5
Ried, T.6
Danuser, G.7
Misteli, T.8
-
122
-
-
20444494936
-
Interchromosomal associations between alternatively expressed loci
-
Spilianakis CG, LaliotiMD, Town T, Lee GR, Flavell RA. 2005. Interchromosomal associations between alternatively expressed loci. Nature 435: 637-645.
-
(2005)
Nature
, vol.435
, pp. 637-645
-
-
Spilianakis, C.G.1
Lalioti, M.D.2
Town, T.3
Lee, G.R.4
Flavell, R.A.5
-
123
-
-
80455143728
-
The complex transcription regulatory landscape of our genome: Control in three dimensions
-
Splinter E, de Laat W. 2011. The complex transcription regulatory landscape of our genome: Control in three dimensions. EMBO J 30: 4345-4355.
-
(2011)
EMBO J
, vol.30
, pp. 4345-4355
-
-
Splinter, E.1
de Laat, W.2
-
124
-
-
33748259774
-
CTCF mediates long-range chromatin looping and local histone modification in the β-globin locus
-
Splinter E, Heath H, Kooren J, Palstra RJ, Klous P, Grosveld F, Galjart N, de Laat W. 2006. CTCF mediates long-range chromatin looping and local histone modification in the β-globin locus. Genes Dev 20: 2349-2354.
-
(2006)
Genes Dev
, vol.20
, pp. 2349-2354
-
-
Splinter, E.1
Heath, H.2
Kooren, J.3
Palstra, R.J.4
Klous, P.5
Grosveld, F.6
Galjart, N.7
de Laat, W.8
-
125
-
-
0035355351
-
Human acrocentric chromosomeswith transcriptionally silent nucleolar organizer regions associate with nucleoli
-
Sullivan GJ, Bridger JM, Cuthbert AP, Newbold RF, Bickmore WA, McStay B. 2001. Human acrocentric chromosomeswith transcriptionally silent nucleolar organizer regions associate with nucleoli. EMBO J 20: 2867-2874.
-
(2001)
EMBO J
, vol.20
, pp. 2867-2874
-
-
Sullivan, G.J.1
Bridger, J.M.2
Cuthbert, A.P.3
Newbold, R.F.4
Bickmore, W.A.5
McStay, B.6
-
128
-
-
0036923833
-
Looping and interaction between hypersensitive sites in the active β-globin locus
-
Tolhuis B, Palstra RJ, Splinter E, Grosveld F, de LaatW. 2002. Looping and interaction between hypersensitive sites in the active β-globin locus. Mol Cell 10: 1453-1465.
-
(2002)
Mol Cell
, vol.10
, pp. 1453-1465
-
-
Tolhuis, B.1
Palstra, R.J.2
Splinter, E.3
Grosveld, F.4
de Laat, W.5
-
129
-
-
13244272059
-
Proximity among distant regulatory elements at the β-globin locus requiresGATA-1 and FOG-1
-
Vakoc CR, Letting DL, Gheldof N, Sawado T, Bender MA, Groudine M, Weiss MJ, Dekker J, Blobel GA. 2005. Proximity among distant regulatory elements at the β-globin locus requiresGATA-1 and FOG-1. Mol Cell 17: 453-462.
-
(2005)
Mol Cell
, vol.17
, pp. 453-462
-
-
Vakoc, C.R.1
Letting, D.L.2
Gheldof, N.3
Sawado, T.4
Bender, M.A.5
Groudine, M.6
Weiss, M.J.7
Dekker, J.8
Blobel, G.A.9
-
130
-
-
77957932111
-
Genomics tools for unraveling chromosome architecture
-
van Steensel B, Dekker J. 2011. Genomics tools for unraveling chromosome architecture. Nat Biotechnol 28: 1089-1095.
-
(2011)
Nat Biotechnol
, vol.28
, pp. 1089-1095
-
-
van Steensel, B.1
Dekker, J.2
-
131
-
-
34247272882
-
Long-range chromosomal interactions regulate the timing of the transition between poised and active gene expression
-
Vernimmen D, De Gobbi M, Sloane-Stanley JA, Wood WG, Higgs DR. 2007. Long-range chromosomal interactions regulate the timing of the transition between poised and active gene expression. EMBO J 26: 2041-2051.
-
(2007)
EMBO J
, vol.26
, pp. 2041-2051
-
-
Vernimmen, D.1
De Gobbi, M.2
Sloane-Stanley, J.A.3
Wood, W.G.4
Higgs, D.R.5
-
132
-
-
18744363039
-
Human archival tissues provide a valuable source for the analysis of spatial genome organization
-
Wiech T, Timme S, Riede F, Stein S, Schuricke M, Cremer C, Werner M, Hausmann M,Walch A. 2005. Human archival tissues provide a valuable source for the analysis of spatial genome organization. Histochem Cell Biol 123: 229-238.
-
(2005)
Histochem Cell Biol
, vol.123
, pp. 229-238
-
-
Wiech, T.1
Timme, S.2
Riede, F.3
Stein, S.4
Schuricke, M.5
Cremer, C.6
Werner, M.7
Hausmann, M.8
Walch, A.9
-
133
-
-
77749323471
-
Upregulation of c-MYC in cis through a large chromatin loop linked to a cancer risk-associated single-nucleotide polymorphism in colorectal cancer cells
-
Wright JB, Brown SJ, Cole MD. 2010. Upregulation of c-MYC in cis through a large chromatin loop linked to a cancer risk-associated single-nucleotide polymorphism in colorectal cancer cells. Mol Cell Biol 30: 1411-1420.
-
(2010)
Mol Cell Biol
, vol.30
, pp. 1411-1420
-
-
Wright, J.B.1
Brown, S.J.2
Cole, M.D.3
-
134
-
-
33644557773
-
Transient homologous chromosome pairing marks the onset of X inactivation
-
Xu N, Tsai CL, Lee JT. 2006. Transient homologous chromosome pairing marks the onset of X inactivation. Science 311: 1149-1152.
-
(2006)
Science
, vol.311
, pp. 1149-1152
-
-
Xu, N.1
Tsai, C.L.2
Lee, J.T.3
-
135
-
-
78349252731
-
Mediation of CTCF transcriptional insulation by DEAD-box RNAbinding protein p68 and steroid receptor RNA activator SRA
-
Yao H, Brick K, Evrard Y, Xiao T, Camerini-Otero RD, Felsenfeld G. 2010. Mediation of CTCF transcriptional insulation by DEAD-box RNAbinding protein p68 and steroid receptor RNA activator SRA. Genes Dev 24: 2543-2555.
-
(2010)
Genes Dev
, vol.24
, pp. 2543-2555
-
-
Yao, H.1
Brick, K.2
Evrard, Y.3
Xiao, T.4
Camerini-Otero, R.D.5
Felsenfeld, G.6
-
136
-
-
73349139918
-
G9a selectively represses a class of late-replicating genes at the nuclear periphery
-
Yokochi T, Poduch K, Ryba T, Lu J, Hiratani I, Tachibana M, Shinkai Y, Gilbert DM. 2009. G9a selectively represses a class of late-replicating genes at the nuclear periphery. Proc Natl Acad Sci 106: 19363- 19368.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 19363-19368
-
-
Yokochi, T.1
Poduch, K.2
Ryba, T.3
Lu, J.4
Hiratani, I.5
Tachibana, M.6
Shinkai, Y.7
Gilbert, D.M.8
-
137
-
-
79952660821
-
Control of the embryonic stem cell state
-
Young RA. 2011. Control of the embryonic stem cell state. Cell 144: 940-954.
-
(2011)
Cell
, vol.144
, pp. 940-954
-
-
Young, R.A.1
-
138
-
-
0842310349
-
CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species
-
Yusufzai TM, Tagami H, Nakatani Y, Felsenfeld G. 2004. CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species. Mol Cell 13: 291-298.
-
(2004)
Mol Cell
, vol.13
, pp. 291-298
-
-
Yusufzai, T.M.1
Tagami, H.2
Nakatani, Y.3
Felsenfeld, G.4
-
139
-
-
84862778059
-
Spatial organization of the mouse genome and its role in recurrent chromosomal translocations
-
Zhang Y, McCord RP, Ho YJ, Lajoie BR, Hildebrand DG, Simon AC, Becker MS, Alt FW, Dekker J. 2012. Spatial organization of the mouse genome and its role in recurrent chromosomal translocations. Cell 148: 908-921.
-
(2012)
Cell
, vol.148
, pp. 908-921
-
-
Zhang, Y.1
McCord, R.P.2
Ho, Y.J.3
Lajoie, B.R.4
Hildebrand, D.G.5
Simon, A.C.6
Becker, M.S.7
Alt, F.W.8
Dekker, J.9
-
140
-
-
33750203582
-
Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions
-
Zhao Z, Tavoosidana G, Sjolinder M, Gondor A, Mariano P, Wang S, Kanduri C, Lezcano M, Sandhu KS, Singh U, et al. 2006. Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions. Nat Genet 38: 1341-1347.
-
(2006)
Nat Genet
, vol.38
, pp. 1341-1347
-
-
Zhao, Z.1
Tavoosidana, G.2
Sjolinder, M.3
Gondor, A.4
Mariano, P.5
Wang, S.6
Kanduri, C.7
Lezcano, M.8
Sandhu, K.S.9
Singh, U.10
-
141
-
-
4544255977
-
Transcription-dependent spatial arrangement of CFTR and adjacent genes in human cell nuclei
-
Zink D, Amaral MD, Englmann A, Land S, Clarke LA, Rudolph C, Alt F, Luther K, Braz C, Sadoni N, et al. 2004. Transcription-dependent spatial arrangement of CFTR and adjacent genes in human cell nuclei. J Cell Biol 166: 815-825.
-
(2004)
J Cell Biol
, vol.166
, pp. 815-825
-
-
Zink, D.1
Amaral, M.D.2
Englmann, A.3
Land, S.4
Clarke, L.A.5
Rudolph, C.6
Alt, F.7
Luther, K.8
Braz, C.9
Sadoni, N.10
|