Inheritance of gene density-related higher order chromatin arrangements in normal and tumor cell nuclei

Journal of Cell Biology

Volumn 162, Issue 5, 2003, Pages 809-820

  Cremer, Marion ^a,c   Küpper, Katrin ^a   Wagler, Babett ^a   Wizelman, Leah ^a   Hase, Johann V ^b   Weiland, Yanina ^c   Kreja, Ludwika ^d   Diebold, Joachim ^a   Speicher, Michael R ^c   Cremer, Thomas ^a  

^a UNIVERSITY OF MUNICH   (Germany)

^b UNIVERSITY OF HEIDELBERG   (Germany)

^c TECHNICAL UNIVERSITY OF MUNICH   (Germany)

^d UNIVERSITY OF ULM   (Germany)

Author keywords

Chromosome territories; Nuclear architecture; Nuclear shape; Radial chromatin arrangement; Tumor cells

Indexed keywords

ARTICLE; CELL NUCLEUS; CHROMATIN STRUCTURE; CHROMOSOMAL LOCALIZATION; CHROMOSOME 18; CHROMOSOME 19; CONTROLLED STUDY; HUMAN; HUMAN CELL; LYMPHOCYTE; PRIORITY JOURNAL; TUMOR CELL;

CELL LINE; CELL LINE, TUMOR; CELL NUCLEUS; CHROMATIN; CHROMOSOME PAINTING; CHROMOSOMES, HUMAN, PAIR 18; CHROMOSOMES, HUMAN, PAIR 19; EPITHELIAL CELLS; GENE DOSAGE; GENE ORDER; HUMANS; KARYOTYPING; KERATINOCYTES; MELANOMA; NEOPLASMS; NUCLEIC ACID CONFORMATION;

EID: 0041885232     PISSN: 00219525     EISSN: None     Source Type: Journal    
DOI: 10.1083/jcb.200304096     Document Type: Article

References (38)

1. Abdel-Rahman, W.M., K. Katsura, W. Rens, P.A. Gorman, D. Sheer, D. Bicknell, W.F. Bodmer, M.J. Arends, A.H. Wyllie, and P.A. Edwards. 2001. Spectral karyotyping suggests additional subsets of colorectal cancers characterized by pattern of chromosome rearrangement. Proc. Natl. Acad. Sci. USA. 98:2538-2543.
2. Bach, S.P., A.G. Renehan, and C.S. Potten. 2000. Stem cells: the intestinal stem cell as a paradigm. Carcinogenesis. 21:469-476.
3. Bauer, R.K. 1962. Der median-quartile-test. Metrika. 5:1-16.
4. Bennett, D.C., K. Bridges, and I.A. McKay. 1985. Clonal separation of mature melanocyces from premelanocytes in a diploid human cell strain: spontaneous and induced pigmentation of premelanocytes. J. Cell Sci. 77:167-183.
5. Boyle, S., S. Gilchrist, J.M. Bridger, N.L. Mahy, J.A. Ellis, and W.A. Bickmore. 2001. The spatial organization of human chromosomes within the nuclei of normal and emerin-mutant cells. Hum. Mol. Genet. 10:211-219.
6. Bridger, J.M., S. Boyle, I.R. Kill, and W.A. Bickmore. 2000. Re-modelling of nuclear architecture in quiescent and senescent human fibroblasts. Curr. Biol. 10:149-152.
7. Cahill, D.P., C. Lengauer, J. Yu, G.J. Riggins, J.K. Willson, S.D. Markowitz, K.W. Kinzler, and B. Vogelstein. 1998. Mutations of mitotic checkpoint genes in human cancers. Nature. 392:300-303.
8. Clancy, B., and L.J. Cauller. 1998. Reduction of background autofluorescence in brain sections following immersion in sodium borohydride. J. Neurosci. Methods. 83:97-102.
9. Cremet, M., J. von Hase, T. Volm, A. Brero, G. Kreth, J. Walter, C. Fischer, I. Solovei, C. Cremer, and T. Cremer. 2001. Non-random radial higher-order chromatin arrangements in nuclei of diploid human cells. Chromosome Res. 9:541-567.
10. Croft, J.A., J.M. Bridger, S. Boyle, P. Perry, P. Teague, and W.A. Bickmore. 1999. Differences in the localization and morphology of chromosomes in the human nucleus. J. Cell Biol. 145:1119-1131.
11. Dimitrova, D.S., and R. Berezney. 2002. The spatio-temporal organization of DNA replication sites is identical in primary, immortalized and transformed mammalian cells. J. Cell Sci. 115:4037-4051.
12. du Manoir, S., M.R. Speicher, S. Joos, E. Schrock, S. Popp, H. Dohner, G. Kovacs, M. Robert-Nicoud, P. Lichter, and T. Cremer. 1993. Detection of complete and partial chromosome gains and losses by comparative genomic in situ hybridization. Hum. Genet. 90:590-610.
13. Dufer, J., M.F. Poupon, and S. Yarouji. 2000. Nuclear DNA content and chromatin pattern of rat rhabdomyosarcoma cell sublines with different metastatic potentials. Anal. Cell. Pathol. 20:41-48.
14. Gerlich, D., J. Beaudouin, B. Kalbfuss, N. Daigle, R. Eils, and J. Ellenberg. 2003. Global chromosome positions are transmitted through mitosis in mammalian cells. Cell. 112:751-764.
15. Gordon, M.Y. 1993. Human haemopoietic stem cell assays. Blood Rev. 7:190-197.
16. Habermann, F.A., M. Cremer, J. Walter, G. Kreth, J. von Hase, K. Bauer, J. Wienberg, C. Cremer, T. Cremer, and I. Solovei. 2001. Arrangements of macro- and microchromosomes in chicken cells. Chromosome Res. 9:569-584.
17. Herlyn, M., M.L. Mancianti, J. Jambrosic, J.B. Bolen, and H. Koprowski. 1988. Regulatory factors that determine growth and phenotype of normal human melanocytes. Exp. Cell Res. 179:322-331.
18. Jauch, A., J. Wienberg, R. Stanyon, N. Arnold, S. Tofanelli, T. Ishida, and T. Cremer. 1992. Reconstruction of genomic rearrangements in great apes and gibbons by chromosome painting. Proc. Natl. Acad. Sci. USA. 89:8611-8615.
19. Johnson, J.P., M. Demmer-Dieckmann, T. Meo, M.R. Hadam, and G. Riethmuller. 1981. Surface antigens of human melanoma cells defined by monoclonal antibodies. I. Biochemical characterization of two antigens found on cell lines and fresh rumors of diverse tissue origin. Eur. J. Immunol. 11:825-831.
20. Joos, S., M. Granzow, H. Holtgreve-Grez, R. Siebert, L. Harder, J.I. Martin-Subero, J. Wolf, M. Adamowicz, T.F. Barth, P. Lichter, and A. Jauch. 2003. Hodgkin's lymphoma cell lines are characterized by frequent aberrations on chromosomes 2p and 9p including REL and JAK2. Int. J. Cancer. 103:489-495.
21. Kanda, T., K.F. Sullivan, and G.M. Wahl. 1998. Histone-GFP fusion protein enables sensitive analysis of chromosome dynamics in living mammalian cells. Curr. Biol. 8:377-385.
22. Keenan, S.J., J. Diamond, W.G. McCluggage, H. Bharucha, D. Thompson, P.H. Bartels, and P.W. Hamilton. 2000. An automated machine vision system for the histological grading of cervical intraepithelial neoplasia (CIN). J. Pathol. 192:351-362.
23. Kozubek, S., E. Lukasova, P. Jirsova, I.I. Koutna, M. Kozubek, A. Ganova, E. Bartova, M. Falk, and R. Pasekova. 2002. 3D Structure of the human genome: order in randomness. Chromosoma. 111:321-331.
24. Kraus, J., K. Pantel, D. Pinkel, D.G. Albertson, and M.R. Speicher. 2003. High-resolution genomic profiling of occult micrometastatic tumor cells. Genes Chromosomes Cancer. 36:159-166.
25. Krause, D.S., M.J. Fackler, C.I. Civin, and W.S. May. 1996. CD34: structure, biology, and clinical utility. Blood. 87:1-13.
26. Kuppers, R., I. Schwering, A. Brauninger, K. Rajewsky, and M.L. Hansmann. 2002. Biology of Hodgkin's lymphoma. Ann. Oncol. 13:11-18.
27. Lachner, M., and T. Jenuwein. 2002. The many faces of histone lysine methylation. Curr. Opin. Cell Biol. 14:286-298.
28. Leibovitz, A., J.C. Stinson, W.B. McCombs, III, C.E. McCoy, K.C. Mazur, and N.D. Mabry. 1976. Classification of human colorectal adenocarcinoma cell lines. Cancer Res. 36:4562-4569.
29. Ochs, B.A., W.W. Franke, R. Moll, C. Grund, M. Cremer, and T. Cremer. 1983. Epithelial character and morphologic diversity of cell cultures from human amniotic fluids examined by immunofluorescence microscopy and gel electrophoresis of cytoskeletal proteins. Differentiation. 24:153-173.
30. Parada, L.A., P.G. McQueen, P.J. Munson, and T. Misteli. 2002. Conservation of relative chromosome positioning in normal and cancer cells. Curr. Biol. 12:1692-1697.
31. Schermelleh, L., S. Thalhammer, W. Heckl, H. Posl, T. Cremer, K. Schutze, and M. Cremer. 1999. Laser microdissection and laser pressure catapulting for the generation of chromosome-specific paint probes. Biotechniques. 27:362-367.
32. Schneider, U., H.U. Schwenk, and G. Bornkamm. 1977. Characterization of EBV-genome negative "null" and "T" cell lines derived from children with acute lymphoblastic leukemia and leukemic transformed non-Hodgkin lymphoma. Int. J. Cancer. 19:621-626.
33. Schnell, S.A., W.A. Staines, and M.W. Wessendorf. 1999. Reduction of lipofuscin-like autofluorescence in fluorescently labeled tissue. J. Histochem. Cytochem. 47:719-730.
34. Skalnikova, M., S. Kozubek, E. Lukasova, E. Bartova, P. Jirsova, A. Cafourkova, I. Koutna, and M. Kozubek. 2000. Spatial arrangement of genes, centromeres and chromosomes in human blood cell nuclei and its changes during the cell cycle, differentiation and after irradiation. Chromosome Res. 8:487-499.
35. Solovei, I., J. Walter, M. Cremer, F. Habermann, L. Schermelleh, and T. Cremer. 2002. FISH on three-dimensionally preserved nuclei. In FISH: A Practical Approach. J. Squire, B. Beatty, and S. Mai, editors. Oxford University Press, Oxford. 119-157.
36. Tanabe, H., F.A. Habermann, I. Solovei, M. Cremer, and T. Cremer. 2002a. Non-random radial arrangements of interphase chromosome territories: evolutionary considerations and functional implications. Mutat. Res. 504:37-45.
37. Tanabe, H., S. Muller, M. Neusser, J. von Hase, E. Calcagno, M. Cremer, I. Solovei, C. Cremer, and T. Cremer. 2002b. Evolutionary conservation of chromosome territory arrangements in cell nuclei from higher primates. Proc. Natl. Acad. Sci. USA. 99:4424-4429.
38. Weierich, C., A. Brero, S. Stein, J.v. Hase, C. Cremer, T. Cremer, and I. Solovei. 2003. Three-dimensional arrangements of centromeres and telomeres in nuclei of human and murine lymphocytes. Chromosome Res. 11:485-502.