-
1
-
-
0034750744
-
Non-random radial higher-order chromatin arrangements in nuclei of diploid human cells
-
Cremer M, von Hase J, Volm T, Brero A, Kreth G, et al. (2001) Non-random radial higher-order chromatin arrangements in nuclei of diploid human cells. Chromosome Res 9: 541-567.
-
(2001)
Chromosome Res
, vol.9
, pp. 541-567
-
-
Cremer, M.1
von Hase, J.2
Volm, T.3
Brero, A.4
Kreth, G.5
-
2
-
-
0345039879
-
Global chromosome positions are transmitted through mitosis in mammalian cells
-
Gerlich D, Beaudouin J, Kalbfuss B, Daigle N, Eils R, et al. (2003) Global chromosome positions are transmitted through mitosis in mammalian cells. Cell 112: 751-764.
-
(2003)
Cell
, vol.112
, pp. 751-764
-
-
Gerlich, D.1
Beaudouin, J.2
Kalbfuss, B.3
Daigle, N.4
Eils, R.5
-
4
-
-
21844444077
-
Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes
-
doi:10.1371/journal.pbio.0030157
-
Bolzer A, Kreth G, Solovei I, Koehler D, Saracoglu K, et al. (2005) Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes. PLoS Biol 3: e157. doi:10.1371/journal.pbio.0030157
-
(2005)
PLoS Biol
, vol.3
-
-
Bolzer, A.1
Kreth, G.2
Solovei, I.3
Koehler, D.4
Saracoglu, K.5
-
5
-
-
33646729244
-
Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations
-
doi:10.1371/journal.pbio.0040138
-
Branco MR, Pombo A (2006) Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations. PLoS Biol 4: e138. doi:10.1371/journal.pbio.0040138
-
(2006)
PLoS Biol
, vol.4
-
-
Branco, M.R.1
Pombo, A.2
-
6
-
-
0038054340
-
Spatial proximity of translocation-prone gene loci in human lymphomas
-
Roix JJ, McQueen PG, Munson PJ, Parada LA, Misteli T (2003) Spatial proximity of translocation-prone gene loci in human lymphomas. Nat Genet 34: 287-291.
-
(2003)
Nat Genet
, vol.34
, pp. 287-291
-
-
Roix, J.J.1
McQueen, P.G.2
Munson, P.J.3
Parada, L.A.4
Misteli, T.5
-
7
-
-
0343683416
-
Nuclear distribution of transcription factors in relation to sites of transcription and RNA polymerase II
-
Grande MA, van der Kraan I, de Jong L, van Driel R (1997) Nuclear distribution of transcription factors in relation to sites of transcription and RNA polymerase II. J Cell Sci 110: 1781-1791.
-
(1997)
J Cell Sci
, vol.110
, pp. 1781-1791
-
-
Grande, M.A.1
van der Kraan, I.2
de Jong, L.3
van Driel, R.4
-
8
-
-
0029973080
-
Active RNA polymerases are localized within discrete transcription factories' in human nuclei
-
Iborra FJ, Pombo A, Jackson DA, Cook PR (1996) Active RNA polymerases are localized within discrete transcription "factories' in human nuclei. J Cell Sci 109: 1427-1436.
-
(1996)
J Cell Sci
, vol.109
, pp. 1427-1436
-
-
Iborra, F.J.1
Pombo, A.2
Jackson, D.A.3
Cook, P.R.4
-
9
-
-
5444243359
-
Active genes dynamically colocalize to shared sites of ongoing transcription
-
Osborne CS, Chakalova L, Brown KE, Carter D, Horton A, et al. (2004) Active genes dynamically colocalize to shared sites of ongoing transcription. Nat Genet 36: 1065-1071.
-
(2004)
Nat Genet
, vol.36
, pp. 1065-1071
-
-
Osborne, C.S.1
Chakalova, L.2
Brown, K.E.3
Carter, D.4
Horton, A.5
-
10
-
-
33744779614
-
The locus control region is required for association of the murine beta-globin locus with engaged transcription factories during erythroid maturation
-
Ragoczy T, Bender MA, Telling A, Byron R, Groudine M (2006) The locus control region is required for association of the murine beta-globin locus with engaged transcription factories during erythroid maturation. Genes Dev 20: 1447-1457.
-
(2006)
Genes Dev
, vol.20
, pp. 1447-1457
-
-
Ragoczy, T.1
Bender, M.A.2
Telling, A.3
Byron, R.4
Groudine, M.5
-
11
-
-
0030909002
-
Dynamic relocation of transcription and splicing factors dependent upon transcriptional activity
-
Zeng C, Kim E, Warren SL, Berget SM (1997) Dynamic relocation of transcription and splicing factors dependent upon transcriptional activity. EMBO J 16: 1401-1412.
-
(1997)
EMBO J
, vol.16
, pp. 1401-1412
-
-
Zeng, C.1
Kim, E.2
Warren, S.L.3
Berget, S.M.4
-
12
-
-
0037049641
-
The transcription cycle of RNA polymerase II in living cells
-
Kimura H, Sugaya K, Cook PR (2002) The transcription cycle of RNA polymerase II in living cells. J Cell Biol 159: 777-782.
-
(2002)
J Cell Biol
, vol.159
, pp. 777-782
-
-
Kimura, H.1
Sugaya, K.2
Cook, P.R.3
-
14
-
-
13444301186
-
Molecular determinants of NOTCH4 transcription in vascular endothelium
-
Wu J, Iwata F, Grass JA, Osborne CS, Elnitski L, et al. (2005) Molecular determinants of NOTCH4 transcription in vascular endothelium. Mol Cell Biol 25: 1458-1474.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 1458-1474
-
-
Wu, J.1
Iwata, F.2
Grass, J.A.3
Osborne, C.S.4
Elnitski, L.5
-
15
-
-
33645027986
-
Stochastic protein expression in individual cells at the single molecule level
-
Cai L, Friedman N, Xie XS (2006) Stochastic protein expression in individual cells at the single molecule level. Nature 440: 358-362.
-
(2006)
Nature
, vol.440
, pp. 358-362
-
-
Cai, L.1
Friedman, N.2
Xie, X.S.3
-
16
-
-
33748994704
-
Stochastic mRNA synthesis in mammalian cells
-
doi:10.1371/journal.pbio. 0040309
-
Raj A, Peskin CS, Tranchina D, Vargas DY, Tyagi S (2006) Stochastic mRNA synthesis in mammalian cells. PLoS Biol 4: e309. doi:10.1371/journal.pbio. 0040309
-
(2006)
PLoS Biol
, vol.4
-
-
Raj, A.1
Peskin, C.S.2
Tranchina, D.3
Vargas, D.Y.4
Tyagi, S.5
-
18
-
-
0024329991
-
Induction of c-fos and c-myc expression during B cell activation by IL-4 and immunoglobulin binding ligands
-
Klemsz MJ, Justement LB, Palmer E, Cambier JC (1989) Induction of c-fos and c-myc expression during B cell activation by IL-4 and immunoglobulin binding ligands. J Immunol 143: 1032-1039.
-
(1989)
J Immunol
, vol.143
, pp. 1032-1039
-
-
Klemsz, M.J.1
Justement, L.B.2
Palmer, E.3
Cambier, J.C.4
-
19
-
-
2942691957
-
Antisense intergenic transcription in V(D)J recombination
-
Bolland DJ, Wood AL, Johnston CM, Bunting SF, Morgan G, et al. (2004) Antisense intergenic transcription in V(D)J recombination. Nat Immunol 5: 630-637.
-
(2004)
Nat Immunol
, vol.5
, pp. 630-637
-
-
Bolland, D.J.1
Wood, A.L.2
Johnston, C.M.3
Bunting, S.F.4
Morgan, G.5
-
20
-
-
33344461310
-
A transient heterochromatic state in Xist preempts X inactivation choice without RNA stabilization
-
Sun BK, Deaton AM, Lee JT (2006) A transient heterochromatic state in Xist preempts X inactivation choice without RNA stabilization. Mol Cell 21: 617-628.
-
(2006)
Mol Cell
, vol.21
, pp. 617-628
-
-
Sun, B.K.1
Deaton, A.M.2
Lee, J.T.3
-
21
-
-
0024021747
-
Splice site selection, rate of splicing, and alternative splicing on nascent transcripts
-
Beyer AL, Osheim YN (1988) Splice site selection, rate of splicing, and alternative splicing on nascent transcripts. Genes Dev 2: 754-765.
-
(1988)
Genes Dev
, vol.2
, pp. 754-765
-
-
Beyer, A.L.1
Osheim, Y.N.2
-
22
-
-
0026440185
-
The block to transcriptional elongation within the human c-myc gene is determined in the promoter-proximal region
-
Krumm A, Meulia T, Brunvand M, Groudine M (1992) The block to transcriptional elongation within the human c-myc gene is determined in the promoter-proximal region. Genes Dev 6: 2201-2213.
-
(1992)
Genes Dev
, vol.6
, pp. 2201-2213
-
-
Krumm, A.1
Meulia, T.2
Brunvand, M.3
Groudine, M.4
-
23
-
-
0029051646
-
Transcription complex stability and chromatin dynamics in vivo
-
Wijgerde M, Grosveld F, Fraser P (1995) Transcription complex stability and chromatin dynamics in vivo. Nature 377: 209-213.
-
(1995)
Nature
, vol.377
, pp. 209-213
-
-
Wijgerde, M.1
Grosveld, F.2
Fraser, P.3
-
24
-
-
0033557569
-
The nuclear topography of ABL, BCR, PML, and RARalpha genes: Evidence for gene proximity in specific phases of the cell cycle and stages of hematopoietic differentiation
-
Neves H, Ramos C, da Silva MG, Parreira A, Parreira L (1999) The nuclear topography of ABL, BCR, PML, and RARalpha genes: Evidence for gene proximity in specific phases of the cell cycle and stages of hematopoietic differentiation. Blood 93: 1197-1207.
-
(1999)
Blood
, vol.93
, pp. 1197-1207
-
-
Neves, H.1
Ramos, C.2
da Silva, M.G.3
Parreira, A.4
Parreira, L.5
-
25
-
-
29244451509
-
Common themes and cell type specific variations of higher order chromatin arrangements in the mouse
-
Mayer R, Brero A, von Hase J, Schroeder T, Cremer T, et al. (2005) Common themes and cell type specific variations of higher order chromatin arrangements in the mouse. BMC Cell Biol 6: 44.
-
(2005)
BMC Cell Biol
, vol.6
, pp. 44
-
-
Mayer, R.1
Brero, A.2
von Hase, J.3
Schroeder, T.4
Cremer, T.5
-
27
-
-
0036923833
-
Looping and interaction between hypersensitive sites in the active beta-globin locus
-
Tolhuis B, Palstra RJ, Splinter E, Grosveld F, de Laat W (2002) Looping and interaction between hypersensitive sites in the active beta-globin locus. Mol Cell 10: 1453-1465.
-
(2002)
Mol Cell
, vol.10
, pp. 1453-1465
-
-
Tolhuis, B.1
Palstra, R.J.2
Splinter, E.3
Grosveld, F.4
de Laat, W.5
-
28
-
-
0034327890
-
Molecular biology of Burkitt's lymphoma
-
Hecht JL, Aster JC (2000) Molecular biology of Burkitt's lymphoma. J Clin Oncol 18: 3707-3721.
-
(2000)
J Clin Oncol
, vol.18
, pp. 3707-3721
-
-
Hecht, J.L.1
Aster, J.C.2
-
29
-
-
0038336667
-
Neoplastic development in plasma cells
-
Potter M (2003) Neoplastic development in plasma cells. Immunol Rev 194: 177-195.
-
(2003)
Immunol Rev
, vol.194
, pp. 177-195
-
-
Potter, M.1
-
30
-
-
0036903167
-
Transcription-based model for the induction of interchromosomal exchange events by ionizing irradiation in mammalian cell lines that undergo necrosis
-
Radford IR (2002) Transcription-based model for the induction of interchromosomal exchange events by ionizing irradiation in mammalian cell lines that undergo necrosis. Int J Radiat Biol 78: 1081-1093.
-
(2002)
Int J Radiat Biol
, vol.78
, pp. 1081-1093
-
-
Radford, I.R.1
-
31
-
-
12344326066
-
Ionizing radiation-induced chromosomal rearrangements occur in transcriptionally active regions of the genome
-
Forrester HB, Radford IR (2004) Ionizing radiation-induced chromosomal rearrangements occur in transcriptionally active regions of the genome. Int J Radiat Biol 80: 757-767.
-
(2004)
Int J Radiat Biol
, vol.80
, pp. 757-767
-
-
Forrester, H.B.1
Radford, I.R.2
-
32
-
-
33646021963
-
Long-range directional movement of an interphase chromosome site
-
Chuang CH, Carpenter AE, Fuchsova B, Johnson T, de Lanerolle P, et al. (2006) Long-range directional movement of an interphase chromosome site. Curr Biol 16: 825-831.
-
(2006)
Curr Biol
, vol.16
, pp. 825-831
-
-
Chuang, C.H.1
Carpenter, A.E.2
Fuchsova, B.3
Johnson, T.4
de Lanerolle, P.5
-
33
-
-
0036006293
-
Chromatin motion is constrained by association with nuclear compartments in human cells
-
Chubb JR, Boyle S, Perry P, Bickmore WA (2002) Chromatin motion is constrained by association with nuclear compartments in human cells. Curr Biol 12: 439-445.
-
(2002)
Curr Biol
, vol.12
, pp. 439-445
-
-
Chubb, J.R.1
Boyle, S.2
Perry, P.3
Bickmore, W.A.4
-
34
-
-
0035824395
-
Chromosome dynamics in the yeast interphase nucleus
-
Heun P, Laroche T, Shimada K, Furrer P, Gasser SM (2001) Chromosome dynamics in the yeast interphase nucleus. Science 294: 2181-2186.
-
(2001)
Science
, vol.294
, pp. 2181-2186
-
-
Heun, P.1
Laroche, T.2
Shimada, K.3
Furrer, P.4
Gasser, S.M.5
-
35
-
-
0035928736
-
Multiple regimes of constrained chromosome motion are regulated in the interphase Drosophila nucleus
-
Vazquez J, Belmont AS, Sedat JW (2001) Multiple regimes of constrained chromosome motion are regulated in the interphase Drosophila nucleus. Curr Biol 11: 1227-1239.
-
(2001)
Curr Biol
, vol.11
, pp. 1227-1239
-
-
Vazquez, J.1
Belmont, A.S.2
Sedat, J.W.3
-
36
-
-
13944249559
-
Location of Myc, Igh, and Igk on Robertsonian fusion chromosomes is inconsequential for Myc translocations and plasmacytoma development in mice, but Rb(6.15)-carrying tumors prefer Igk-Myc inversions over translocations
-
Silva S, Wiener F, Klein G, Janz S (2005) Location of Myc, Igh, and Igk on Robertsonian fusion chromosomes is inconsequential for Myc translocations and plasmacytoma development in mice, but Rb(6.15)-carrying tumors prefer Igk-Myc inversions over translocations. Genes Chromosomes Cancer 42: 416-426.
-
(2005)
Genes Chromosomes Cancer
, vol.42
, pp. 416-426
-
-
Silva, S.1
Wiener, F.2
Klein, G.3
Janz, S.4
-
37
-
-
20444494936
-
Interchromosomal associations between alternatively expressed loci
-
Spilianakis CG, Lalioti MD, Town T, Lee GR, Flavell RA (2005) Interchromosomal associations between alternatively expressed loci. Nature 435: 637-645.
-
(2005)
Nature
, vol.435
, pp. 637-645
-
-
Spilianakis, C.G.1
Lalioti, M.D.2
Town, T.3
Lee, G.R.4
Flavell, R.A.5
-
38
-
-
5444260778
-
Spatial positioning; a new dimension in genome function
-
Misteli T (2004) Spatial positioning; a new dimension in genome function. Cell 119: 153-156.
-
(2004)
Cell
, vol.119
, pp. 153-156
-
-
Misteli, T.1
-
39
-
-
2942679507
-
Form follows function: The genomic organization of cellular differentiation
-
Kosak ST, Groudine M (2004) Form follows function: The genomic organization of cellular differentiation. Genes Dev 18: 1371-1384.
-
(2004)
Genes Dev
, vol.18
, pp. 1371-1384
-
-
Kosak, S.T.1
Groudine, M.2
-
40
-
-
0035839959
-
Mechanisms of chromosomal translocations in B cell lymphomas
-
Kuppers R, Dalla-Favera R (2001) Mechanisms of chromosomal translocations in B cell lymphomas. Oncogene 20: 5580-5594.
-
(2001)
Oncogene
, vol.20
, pp. 5580-5594
-
-
Kuppers, R.1
Dalla-Favera, R.2
-
41
-
-
1542287213
-
A non-BDNA structure at the Bcl-2 major breakpoint region is cleaved by the RAG complex
-
Raghavan SC, Swanson PC, Wu X, Hsieh CL, Lieber MR (2004) A non-BDNA structure at the Bcl-2 major breakpoint region is cleaved by the RAG complex. Nature 428: 88-93.
-
(2004)
Nature
, vol.428
, pp. 88-93
-
-
Raghavan, S.C.1
Swanson, P.C.2
Wu, X.3
Hsieh, C.L.4
Lieber, M.R.5
-
42
-
-
0034283763
-
V(D)J recombinase-mediated transposition of the BCL2 gene to the IGH locus in follicular lymphoma
-
Vaandrager JW, Schuuring E, Philippo K, Kluin PM (2000) V(D)J recombinase-mediated transposition of the BCL2 gene to the IGH locus in follicular lymphoma. Blood 96: 1947-1952.
-
(2000)
Blood
, vol.96
, pp. 1947-1952
-
-
Vaandrager, J.W.1
Schuuring, E.2
Philippo, K.3
Kluin, P.M.4
-
43
-
-
0023433855
-
Supercoiling of the DNA template during transcription
-
Liu LF, Wang JC (1987) Supercoiling of the DNA template during transcription. Proc Natl Acad Sci U S A 84: 7024-7027.
-
(1987)
Proc Natl Acad Sci U S A
, vol.84
, pp. 7024-7027
-
-
Liu, L.F.1
Wang, J.C.2
-
44
-
-
33745255099
-
A topoisomerase IIbeta-mediated dsDNA break required for regulated transcription
-
Ju BG, Lunyak VV, Perissi V, Garcia-Bassets I, Rose DW, et al. (2006) A topoisomerase IIbeta-mediated dsDNA break required for regulated transcription. Science 312: 1798-1802.
-
(2006)
Science
, vol.312
, pp. 1798-1802
-
-
Ju, B.G.1
Lunyak, V.V.2
Perissi, V.3
Garcia-Bassets, I.4
Rose, D.W.5
-
45
-
-
33747873409
-
Chromatin structural elements and chromosomal translocations in leukemia
-
Zhang Y, Rowley JD (2006) Chromatin structural elements and chromosomal translocations in leukemia. DNA Repair (Amst) 5: 1282-1297.
-
(2006)
DNA Repair (Amst)
, vol.5
, pp. 1282-1297
-
-
Zhang, Y.1
Rowley, J.D.2
-
46
-
-
0027527588
-
Analysis of topoisomerase II-mediated DNA cleavage of the c-myc gene during HL60 differentiation
-
Riou JF, Gabillot M, Riou G (1993) Analysis of topoisomerase II-mediated DNA cleavage of the c-myc gene during HL60 differentiation. FEBS Lett 334: 369-372.
-
(1993)
FEBS Lett
, vol.334
, pp. 369-372
-
-
Riou, J.F.1
Gabillot, M.2
Riou, G.3
-
49
-
-
0036839642
-
Subnuclear localization of Ku protein: Functional association with RNA polymerase II elongation sites
-
Mo X, Dynan WS (2002) Subnuclear localization of Ku protein: Functional association with RNA polymerase II elongation sites. Mol Cell Biol 22: 8088-8099.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 8088-8099
-
-
Mo, X.1
Dynan, W.S.2
-
50
-
-
0033853988
-
Intergenic transcription and developmental remodeling of chromatin subdomains in the human beta-globin locus
-
Gribnau J, Diderich K, Pruzina S, Calzolari R, Fraser P (2000) Intergenic transcription and developmental remodeling of chromatin subdomains in the human beta-globin locus. Mol Cell 5: 377-386.
-
(2000)
Mol Cell
, vol.5
, pp. 377-386
-
-
Gribnau, J.1
Diderich, K.2
Pruzina, S.3
Calzolari, R.4
Fraser, P.5
-
51
-
-
1642535317
-
RNA fluorescence in situ hybridization tagging and recovery of associated proteins to analyze in vivo chromatin interactions
-
Chakalova L, Carter D, Fraser P (2004) RNA fluorescence in situ hybridization tagging and recovery of associated proteins to analyze in vivo chromatin interactions. Methods Enzymol 375: 479-493.
-
(2004)
Methods Enzymol
, vol.375
, pp. 479-493
-
-
Chakalova, L.1
Carter, D.2
Fraser, P.3
-
52
-
-
0034976421
-
Expression of alpha- and beta-globin genes occurs within different nuclear domains in haemopoietic cells
-
Brown KE, Amoils S, Horn JM, Buckle VJ, Higgs DR, et al. (2001) Expression of alpha- and beta-globin genes occurs within different nuclear domains in haemopoietic cells. Nat Cell Biol 3: 602-606.
-
(2001)
Nat Cell Biol
, vol.3
, pp. 602-606
-
-
Brown, K.E.1
Amoils, S.2
Horn, J.M.3
Buckle, V.J.4
Higgs, D.R.5
-
53
-
-
33646725833
-
Splicing speckles are not reservoirs of RNA polymerase II, but contain an inactive form, phosphorylated on serine2 residues of the C-terminal domain
-
Xie SQ, Martin S, Guillot PV, Bentley DL, Pombo A (2006) Splicing speckles are not reservoirs of RNA polymerase II, but contain an inactive form, phosphorylated on serine2 residues of the C-terminal domain. Mol Biol Cell 17: 1723-1733.
-
(2006)
Mol Biol Cell
, vol.17
, pp. 1723-1733
-
-
Xie, S.Q.1
Martin, S.2
Guillot, P.V.3
Bentley, D.L.4
Pombo, A.5
|