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Volumn 9789400759312, Issue , 2013, Pages 167-214

Mobile Genetic Elements (MGEs) carrying catabolic genes

Author keywords

Catabolic plasmids; Horizontal gene transfer (HGT); Mobile genetic elements (MGEs); Transposons; Xenobiotics

Indexed keywords


EID: 84931323365     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-94-007-5931-2_8     Document Type: Chapter
Times cited : (19)

References (277)
  • 1
    • 15244340776 scopus 로고    scopus 로고
    • Characterization of Arthrobacter nicotinovorans HIM, an atrazine-degrading bacterium, from agricultural soil New Zealand
    • Aislabie J, Bej AK, Ryburn J, Lloyd N, Wilkins A. (2005). Characterization of Arthrobacter nicotinovorans HIM, an atrazine-degrading bacterium, from agricultural soil New Zealand. FEMS Microbiol Ecol 52: 279-286
    • (2005) Fems Microbiol Ecol , vol.52 , pp. 279-286
    • Aislabie, J.1    Bej, A.K.2    Ryburn, J.3    Lloyd, N.4    Wilkins, A.5
  • 2
    • 84855264889 scopus 로고    scopus 로고
    • Horizontal gene exchange in environmental microbiota
    • Aminov RI. (2011). Horizontal gene exchange in environmental microbiota. Front Microbiol 2: 158
    • (2011) Front Microbiol , vol.2 , pp. 158
    • Aminov, R.I.1
  • 3
    • 0022443952 scopus 로고
    • Comparative analysis of different Pseudomonas strains that degrade cinnamic acid
    • Andreoni V, Bestetti G. (1986). Comparative analysis of different Pseudomonas strains that degrade cinnamic acid. Appl Environ Microbiol 52: 930-934
    • (1986) Appl Environ Microbiol , vol.52 , pp. 930-934
    • Andreoni, V.1    Bestetti, G.2
  • 4
    • 0021170881 scopus 로고
    • Novel pseudomonas plasmid involved in aniline degradation
    • Anson JG, Mackinnon G. (1984). Novel pseudomonas plasmid involved in aniline degradation. Appl Environ Microbiol 48: 868-869
    • (1984) Appl Environ Microbiol , vol.48 , pp. 868-869
    • Anson, J.G.1    MacKinnon, G.2
  • 5
    • 0034868291 scopus 로고    scopus 로고
    • Gene cluster on pAO1 of Arthrobacter nicotinovorans involved in degradation of the plant alkaloid nicotine: Cloning, Purification, and characterization of 2,6-dihydroxypyridine 3-hydroxylase
    • Baitsch D, Sandu C, Brandsch R, Igloi GL. (2001). Gene cluster on pAO1 of Arthrobacter nicotinovorans involved in degradation of the plant alkaloid nicotine: cloning, Purification, and characterization of 2,6-dihydroxypyridine 3-hydroxylase. J Bacteriol 183: 5262-5267
    • (2001) J Bacteriol , vol.183 , pp. 5262-5267
    • Baitsch, D.1    Sandu, C.2    Brandsch, R.3    Igloi, G.L.4
  • 7
    • 0025181604 scopus 로고
    • Location and organization of the dimethylphenol catabolic genes of pseudomonas cf600
    • Bartilson M, Nordlund I, Shingler V. (1990). Location and organization of the dimethylphenol catabolic genes of Pseudomonas CF600. Mol Gen Genet 220: 294-300
    • (1990) Mol Gen Genet , vol.220 , pp. 294-300
    • Bartilson, M.1    Nordlund, I.2    Shingler, V.3
  • 8
    • 2942512907 scopus 로고    scopus 로고
    • Detection and characterization of conjugative degradative plasmids in xenobiotic-degrading Sphingomonas strains
    • Basta T, Keck A, Klein J, Stolz A. (2004). Detection and characterization of conjugative degradative plasmids in xenobiotic-degrading Sphingomonas strains. J Bacteriol 186: 3862-3872
    • (2004) J Bacteriol , vol.186 , pp. 3862-3872
    • Basta, T.1    Keck, A.2    Klein, J.3    Stolz, A.4
  • 9
    • 21344441499 scopus 로고    scopus 로고
    • Structural and replicative diversity of large plasmids from sphingomonads that degrade polycyclic aromatic compounds and xenobiotics
    • Basta T, Buerger S, Stolz A. (2005). Structural and replicative diversity of large plasmids from sphingomonads that degrade polycyclic aromatic compounds and xenobiotics. Microbiology 151: 2025-2037
    • (2005) Microbiology , vol.151 , pp. 2025-2037
    • Basta, T.1    Buerger, S.2    Stolz, A.3
  • 10
    • 2642531924 scopus 로고    scopus 로고
    • Conjugal transfer of plasmid pNB2 to activated sludge bacteria leads to 3-chloroaniline degradation in enrichment cultures
    • Bathe S. (2004). Conjugal transfer of plasmid pNB2 to activated sludge bacteria leads to 3-chloroaniline degradation in enrichment cultures. Lett Appl Microbiol 38: 527-531
    • (2004) Lett Appl Microbiol , vol.38 , pp. 527-531
    • Bathe, S.1
  • 11
    • 24144468189 scopus 로고    scopus 로고
    • Plasmid-mediated bioaugmentation of activated sludge bacteria in a sequencing batch moving bed reactor using pNB2
    • Bathe S, Schwarzenbeck N, Hausner M. (2005). Plasmid-mediated bioaugmentation of activated sludge bacteria in a sequencing batch moving bed reactor using pNB2. Lett Appl Microbiol 41: 242-247
    • (2005) Lett Appl Microbiol , vol.41 , pp. 242-247
    • Bathe, S.1    Schwarzenbeck, N.2    Hausner, M.3
  • 12
    • 0032898962 scopus 로고    scopus 로고
    • Genetic and biochemical analyses of the tec operon suggest a route for evolution of chlorobenzene degradation genes
    • Beil S, Timmis KN, Pieper DH. (1999). Genetic and biochemical analyses of the tec operon suggest a route for evolution of chlorobenzene degradation genes. J Bacteriol 181: 341-346
    • (1999) J Bacteriol , vol.181 , pp. 341-346
    • Beil, S.1    Timmis, K.N.2    Pieper, D.H.3
  • 14
    • 0033944430 scopus 로고    scopus 로고
    • Bioaugmentation of activated sludge by an indigenous 3-chloroaniline-degrading Comamonas testosteroni strain, I2 gfp
    • Boon N, Goris J, De Vos P, Verstraete W, Top EM. (2000). Bioaugmentation of activated sludge by an indigenous 3-chloroaniline-degrading Comamonas testosteroni strain, I2 gfp. Appl Environ Microbiol 66: 2906-2913
    • (2000) Appl Environ Microbiol , vol.66 , pp. 2906-2913
    • Boon, N.1    Goris, J.2    De Vos, P.3    Verstraete, W.4    Top, E.M.5
  • 15
    • 0035289309 scopus 로고    scopus 로고
    • Genetic diversity among 3-chloroaniline- and aniline-degrading strains of the comamonadaceae
    • Boon N, Goris J, De Vos P, Verstraete W, Top EM. (2001). Genetic diversity among 3-chloroaniline- and aniline-degrading strains of the Comamonadaceae. Appl Environ Microbiol 67: 1107-1115
    • (2001) Appl Environ Microbiol , vol.67 , pp. 1107-1115
    • Boon, N.1    Goris, J.2    De Vos, P.3    Verstraete, W.4    Top, E.M.5
  • 16
    • 0034663936 scopus 로고    scopus 로고
    • Partial characterization of a genomic island associated with the multidrug resistance region of salmonella enterica typhymurium dt104
    • Boyd DA, Peters GA, Ng L, Mulvey MR. (2000). Partial characterization of a genomic island associated with the multidrug resistance region of Salmonella enterica Typhymurium DT104. FEMS Microbiol Lett 189: 285-291
    • (2000) Fems Microbiol Lett , vol.189 , pp. 285-291
    • Boyd, D.A.1    Peters, G.A.2    Ng, L.3    Mulvey, M.R.4
  • 17
    • 33744467396 scopus 로고    scopus 로고
    • Genetic organization of a plasmid from an industrial wastewater bioreactor
    • Bramucci M, Chen M, Nagarajan V. (2006). Genetic organization of a plasmid from an industrial wastewater bioreactor. Appl Microbiol Biotechnol 71: 67-74
    • (2006) Appl Microbiol Biotechnol , vol.71 , pp. 67-74
    • Bramucci, M.1    Chen, M.2    Nagarajan, V.3
  • 18
    • 0347622753 scopus 로고    scopus 로고
    • Characterization of the 101-kilobase-pair megaplasmid pKB1, isolated from the rubber-degrading bacterium gordonia westfalica kb1
    • Bröker D, Arenskötter M, Legatzki A, Nies DH, Steinbüchel A. (2004). Characterization of the 101-kilobase-pair megaplasmid pKB1, isolated from the rubber-degrading bacterium Gordonia westfalica Kb1. J Bacteriol 186: 212-225
    • (2004) J Bacteriol , vol.186 , pp. 212-225
    • Bröker, D.1    Arenskötter, M.2    Legatzki, A.3    Nies, D.H.4    Steinbüchel, A.5
  • 19
    • 38049144593 scopus 로고    scopus 로고
    • Transfer of megaplasmid pKB1 from the rubberdegrading bacterium gordonia westfalica strain kb1 to related bacteria and its modi fication
    • Bröker D, Arenskötter M, Steinbüchel A. (2008). Transfer of megaplasmid pKB1 from the rubberdegrading bacterium Gordonia westfalica strain Kb1 to related bacteria and its modi fication. Appl Microbiol Biotechnol 77: 1317-1327
    • (2008) Appl Microbiol Biotechnol , vol.77 , pp. 1317-1327
    • Bröker, D.1    Arenskötter, M.2    Steinbüchel, A.3
  • 20
    • 0025666463 scopus 로고
    • Comparative genetic organization of incompatibility group P degradative plasmids
    • Burlage RS, Bemis LA, Layton AC, Sayler GS, Larimer F. (1990). Comparative genetic organization of incompatibility group P degradative plasmids. J Bacteriol 172: 6818-6825
    • (1990) J Bacteriol , vol.172 , pp. 6818-6825
    • Burlage, R.S.1    Bemis, L.A.2    Layton, A.C.3    Sayler, G.S.4    Larimer, F.5
  • 21
    • 2942689400 scopus 로고    scopus 로고
    • Shaping bacterial genomes with integrative and conjugative elements
    • Burrus V, Waldor MK. (2004). Shaping bacterial genomes with integrative and conjugative elements. Res Microbiol 155: 376-386
    • (2004) Res Microbiol , vol.155 , pp. 376-386
    • Burrus, V.1    Waldor, M.K.2
  • 22
    • 67049109154 scopus 로고    scopus 로고
    • Resistance plasmid families in Enterobacteriaceae
    • Carattoli A. (2009). Resistance plasmid families in Enterobacteriaceae. Antimicrob Agents Chemother 53: 2227-2238
    • (2009) Antimicrob Agents Chemother , vol.53 , pp. 2227-2238
    • Carattoli, A.1
  • 23
    • 33645222793 scopus 로고    scopus 로고
    • Plasmid-encoded gammahexachlorocyclohexane degradation genes and insertion sequences in sphingobium francense (ex- sphingomonas paucimobilis sp+
    • Cérémonie H, Boubakri H, Mavingui P, Simonet P, Vogel TM. (2006). Plasmid-encoded gammahexachlorocyclohexane degradation genes and insertion sequences in Sphingobium francense (ex- Sphingomonas paucimobilis Sp+). FEMS Microbiol Lett 257: 243-252
    • (2006) Fems Microbiol Lett , vol.257 , pp. 243-252
    • Cérémonie, H.1    Boubakri, H.2    Mavingui, P.3    Simonet, P.4    Vogel, T.M.5
  • 25
    • 0015424751 scopus 로고
    • Genetic basis of the biodegradation of salicylate in Pseudomonas
    • Chakrabarty AM. (1972). Genetic basis of the biodegradation of salicylate in Pseudomonas. J Bacteriol 112: 815-823
    • (1972) J Bacteriol , vol.112 , pp. 815-823
    • Chakrabarty, A.M.1
  • 26
    • 0015634348 scopus 로고
    • Genetic fusion of incompatible plasmids in Pseudomonas
    • Chakrabarty AM. (1973). Genetic fusion of incompatible plasmids in Pseudomonas. Proc Natl Acad Sci USA 70: 1641-1644
    • (1973) Proc Natl Acad Sci USA , vol.70 , pp. 1641-1644
    • Chakrabarty, A.M.1
  • 27
    • 0020350988 scopus 로고
    • Genetic rearrangements in plasmids specifying total degradation of chlorinated benzoic acids
    • Chatterjee DK, Chakrabarty AM. (1982). Genetic rearrangements in plasmids specifying total degradation of chlorinated benzoic acids. Mol Gen Genet 188: 279-285
    • (1982) Mol Gen Genet , vol.188 , pp. 279-285
    • Chatterjee, D.K.1    Chakrabarty, A.M.2
  • 28
    • 0021246784 scopus 로고
    • Restriction mapping of a chlorobenzoate degradative plasmid and molecular cloning of the degradative genes
    • Chatterjee DK, Chakrabarty AM. (1984). Restriction mapping of a chlorobenzoate degradative plasmid and molecular cloning of the degradative genes. Gene 27: 173-181
    • (1984) Gene , vol.27 , pp. 173-181
    • Chatterjee, D.K.1    Chakrabarty, A.M.2
  • 29
    • 0019481141 scopus 로고
    • Plasmid specifying total degradation of 3-chlorobenzoate by a modified ortho pathway
    • Chatterjee DK, Kellogg ST, Hamada S, Chakrabarty AM. (1981). Plasmid specifying total degradation of 3-chlorobenzoate by a modified ortho pathway. J Bacteriol 146: 639-646
    • (1981) J Bacteriol , vol.146 , pp. 639-646
    • Chatterjee, D.K.1    Kellogg, S.T.2    Hamada, S.3    Chakrabarty, A.M.4
  • 30
    • 0034859157 scopus 로고    scopus 로고
    • Detection of mega plasmid from polycyclic aromatic hydrocarbon-degrading sphingomonas sp strain KS14
    • Cho JC, Kim SJ. (2001). Detection of mega plasmid from polycyclic aromatic hydrocarbon-degrading Sphingomonas sp. strain KS14. J Mol Microbiol Biotechnol 3: 503-506
    • (2001) J Mol Microbiol Biotechnol , vol.3 , pp. 503-506
    • Cho, J.C.1    Kim, S.J.2
  • 31
    • 0018827220 scopus 로고
    • Metabolism of naphthalene by pseudomonads: Salicylaldehyde as the first possible inducer in the metabolic pathway
    • Connors MA, Barnsley EA. (1980). Metabolism of naphthalene by pseudomonads: salicylaldehyde as the first possible inducer in the metabolic pathway. J Bacteriol 141: 1052-1054
    • (1980) J Bacteriol , vol.141 , pp. 1052-1054
    • Connors, M.A.1    Barnsley, E.A.2
  • 32
    • 84860708701 scopus 로고    scopus 로고
    • The whole genome sequence of Sphingobium chlorophenolicum L-1: Insights into the evolution of the pentachlorophenol degradation pathway
    • Copley SD, Rokicki J, Turner P, Daligault H, Nolan M, Land M. (2012). The whole genome sequence of Sphingobium chlorophenolicum L-1: insights into the evolution of the pentachlorophenol degradation pathway. Genome Biol Evol 4: 184-198
    • (2012) Genome Biol Evol , vol.4 , pp. 184-198
    • Copley, S.D.1    Rokicki, J.2    Turner, P.3    Daligault, H.4    Nolan, M.5    Land, M.6
  • 33
    • 0028226687 scopus 로고
    • Identification and characterization of a transmissible linear plasmid from Rhodococcus erythropolis BD2 that encodes isopropylbenzene and trichloroethene catabolism
    • Dabrock B, Kesseler M, Averhoff B, Gottschalk G. (1994). Identification and characterization of a transmissible linear plasmid from Rhodococcus erythropolis BD2 that encodes isopropylbenzene and trichloroethene catabolism. Appl Environ Microbiol 60: 853-860
    • (1994) Appl Environ Microbiol , vol.60 , pp. 853-860
    • Dabrock, B.1    Kesseler, M.2    Averhoff, B.3    Gottschalk, G.4
  • 34
    • 0031745940 scopus 로고    scopus 로고
    • The atzABC genes encoding atrazine catabolism are located on a self-transmissible plasmid in Pseudomonas sp strain ADP
    • De Souza ML, Wackett LP, Sadowsky MJ. (1998). The atzABC genes encoding atrazine catabolism are located on a self-transmissible plasmid in Pseudomonas sp. strain ADP. Appl Environ Microbiol 64: 2323-2326
    • (1998) Appl Environ Microbiol , vol.64 , pp. 2323-2326
    • De Souza, M.L.1    Wackett, L.P.2    Sadowsky, M.J.3
  • 35
    • 0028860121 scopus 로고
    • Cloning, nucleotide sequence, and expression of the gene encoding a novel dioxygenase involved in metabolism of carboxydiphenyl ethers in pseudomonas pseudoalcaligenes pob310
    • Dehmel U, Engesser KH, Timmis KN, Dwyer DF. (1995). Cloning, nucleotide sequence, and expression of the gene encoding a novel dioxygenase involved in metabolism of carboxydiphenyl ethers in Pseudomonas pseudoalcaligenes POB310. Arch Microbiol 163: 35-41
    • (1995) Arch Microbiol , vol.163 , pp. 35-41
    • Dehmel, U.1    Engesser, K.H.2    Timmis, K.N.3    Dwyer, D.F.4
  • 36
    • 0033861767 scopus 로고    scopus 로고
    • Effect of dissemination of 2,4-dichlorophenoxyacetic acid (2,4-D) degradation plasmids on 2,4-D degradation and on bacterial community structure in two different soil horizons
    • Dejonghe W, Goris J, El Fantroussi S, Höfte M, De Vos P, Verstraete W, Top E. (2000). Effect of dissemination of 2,4-dichlorophenoxyacetic acid (2,4-D) degradation plasmids on 2,4-D degradation and on bacterial community structure in two different soil horizons. Appl Environ Microbiol 66: 3297-3304
    • (2000) Appl Environ Microbiol , vol.66 , pp. 3297-3304
    • Dejonghe, W.1    Goris, J.2    El Fantroussi, S.3    Höfte, M.4    De Vos, P.5    Verstraete, W.6    Top, E.7
  • 37
    • 0036849709 scopus 로고    scopus 로고
    • Diversity of 3-chloroaniline and 3,4-dichloroaniline degrading bacteria isolated from three different soils and involvement of their plasmids in chloroaniline degradation
    • Dejonghe W, Goris J, Dierickx A, De Dobbeleer V, Crul K, De Vos P, Verstraete W, Top EM. (2002). Diversity of 3-chloroaniline and 3,4-dichloroaniline degrading bacteria isolated from three different soils and involvement of their plasmids in chloroaniline degradation. FEMS Microbiol Ecol 42: 315-325
    • (2002) Fems Microbiol Ecol , vol.42 , pp. 315-325
    • Dejonghe, W.1    Goris, J.2    Dierickx, A.3    De Dobbeleer, V.4    Crul, K.5    De Vos, P.6    Verstraete, W.7    Top, E.M.8
  • 38
    • 20444417458 scopus 로고    scopus 로고
    • The evolution of IncP catabolic plasmids
    • Dennis JJ. (2005). The evolution of IncP catabolic plasmids. Curr Opin Biotechnol 16: 291-298
    • (2005) Curr Opin Biotechnol , vol.16 , pp. 291-298
    • Dennis, J.J.1
  • 39
    • 4344678209 scopus 로고    scopus 로고
    • Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene degradation plasmid from Pseudomonas putida strain NCIB 9816-4
    • Dennis JJ, Zylstra GJ. (2004). Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene degradation plasmid from Pseudomonas putida strain NCIB 9816-4. J Mol Biol 341: 753-768
    • (2004) J Mol Biol , vol.341 , pp. 753-768
    • Dennis, J.J.1    Zylstra, G.J.2
  • 40
    • 0031832295 scopus 로고    scopus 로고
    • Structures of homologous composite transposons carrying cbaABC genes from Europe and North America
    • Di Gioia D, Peel M, Fava F, Wyndham RC. (1998). Structures of homologous composite transposons carrying cbaABC genes from Europe and North America. Appl Environ Microbiol 64: 1940-1946
    • (1998) Appl Environ Microbiol , vol.64 , pp. 1940-1946
    • Di Gioia, D.1    Peel, M.2    Fava, F.3    Wyndham, R.C.4
  • 41
    • 1842454814 scopus 로고    scopus 로고
    • Organization of lin genes and IS 6100 among different strains of hexachlorocyclohexanedegrading Sphingomonas paucimobilis: Evidence for horizontal gene transfer
    • Dogra C, Raina V, Pal R, Suar M, Lal S, Gartemann KH, Holliger C, Van Der Meer JR, Lal R. (2004). Organization of lin genes and IS 6100 among different strains of hexachlorocyclohexanedegrading Sphingomonas paucimobilis: evidence for horizontal gene transfer. J Bacteriol 186: 2225-2235
    • (2004) J Bacteriol , vol.186 , pp. 2225-2235
    • Dogra, C.1    Raina, V.2    Pal, R.3    Suar, M.4    Lal, S.5    Gartemann, K.H.6    Holliger, C.7    Van Der Meer, J.R.8    Lal, R.9
  • 42
    • 0019511050 scopus 로고
    • Properties of six pesticide degradation plasmids isolated from alcaligenes paradoxus and alcaligenes eutrophus
    • Don RH, Pemberton JM. (1981). Properties of six pesticide degradation plasmids isolated from Alcaligenes paradoxus and Alcaligenes eutrophus. J Bacteriol 145: 681-686
    • (1981) J Bacteriol , vol.145 , pp. 681-686
    • Don, R.H.1    Pemberton, J.M.2
  • 43
    • 0022003968 scopus 로고
    • Transposon mutagenesis and cloning analysis of the pathways for degradation of 2,4-dichlorophenoxyacetic acid and 3-chlorobenzoate in Alcaligenes eutrophus JMP134 (pJP4
    • Don RH, Weightman AJ, Knackmuss HJ, Timmis KN. (1985). Transposon mutagenesis and cloning analysis of the pathways for degradation of 2,4-dichlorophenoxyacetic acid and 3-chlorobenzoate in Alcaligenes eutrophus JMP134 (pJP4). J Bacteriol 161: 85-90
    • (1985) J Bacteriol , vol.161 , pp. 85-90
    • Don, R.H.1    Weightman, A.J.2    Knackmuss, H.J.3    Timmis, K.N.4
  • 44
    • 0015781618 scopus 로고
    • Transmissible plasmid coding early enzymes of naphthalene oxidation in Pseudomonas putida
    • Dunn NW, Gunsalus IC. (1973). Transmissible plasmid coding early enzymes of naphthalene oxidation in Pseudomonas putida. J Bacteriol 114: 974-979
    • (1973) J Bacteriol , vol.114 , pp. 974-979
    • Dunn, N.W.1    Gunsalus, I.C.2
  • 45
    • 0029095076 scopus 로고
    • Comamonas acidovorans UCC61 catabolizes o -phthalate via a 4,5-oxygenation pathway that is encoded on a 70 kbp section of plasmid pOPH1 bounded by directly repeated sequences
    • Dutton JR, Venables WA, Saint CP. (1995). Comamonas acidovorans UCC61 catabolizes o -phthalate via a 4,5-oxygenation pathway that is encoded on a 70 kbp section of plasmid pOPH1 bounded by directly repeated sequences. Microbiology 141: 1673-1682
    • (1995) Microbiology , vol.141 , pp. 1673-1682
    • Dutton, J.R.1    Venables, W.A.2    Saint, C.P.3
  • 46
    • 0034991776 scopus 로고    scopus 로고
    • Plasmid-encoded phthalate catabolic pathway in Arthrobacter keyseri 12B
    • Eaton RW. (2001). Plasmid-encoded phthalate catabolic pathway in Arthrobacter keyseri 12B. J Bacteriol 183: 3689-3703
    • (2001) J Bacteriol , vol.183 , pp. 3689-3703
    • Eaton, R.W.1
  • 47
    • 0022520181 scopus 로고
    • Characterization of a plasmid-speci fi ed pathway for catabolism of isopropylbenzene in Pseudomonas putida RE204
    • Eaton RW, Timmis KN. (1986). Characterization of a plasmid-speci fi ed pathway for catabolism of isopropylbenzene in Pseudomonas putida RE204. J Bacteriol 168: 123-131
    • (1986) J Bacteriol , vol.168 , pp. 123-131
    • Eaton, R.W.1    Timmis, K.N.2
  • 48
    • 79959574494 scopus 로고    scopus 로고
    • Marine integrons containing novel integrase genes, attachment sites, atti, and associated gene cassettes in polluted sediments from suez and tokyo bays
    • Elsaied H, Stokes HW, Kitamura K, Kurusu Y, Kamagata Y, Maruyama A. (2011). Marine integrons containing novel integrase genes, attachment sites, attI, and associated gene cassettes in polluted sediments from Suez and Tokyo Bays. ISME J 5: 1162-1177
    • (2011) ISME J , vol.5 , pp. 1162-1177
    • Elsaied, H.1    Stokes, H.W.2    Kitamura, K.3    Kurusu, Y.4    Kamagata, Y.5    Maruyama, A.6
  • 49
    • 0031148682 scopus 로고    scopus 로고
    • Cloning and sequence analysis of a novel insertion element from plasmids harbored by the carbofuran-degrading bacterium, sphingomonas sp CFO6
    • Feng X, Ou LT, Ogram A. (1997a). Cloning and sequence analysis of a novel insertion element from plasmids harbored by the carbofuran-degrading bacterium, Sphingomonas sp. CFO6. Plasmid 37: 169-179
    • (1997) Plasmid , vol.37 , pp. 169-179
    • Feng, X.1    Ou, L.T.2    Ogram, A.3
  • 50
    • 0030897550 scopus 로고    scopus 로고
    • Plasmid-mediated mineralization of carbofuran by Sphingomonas sp. strain CF06
    • Feng X, Ou LT, Ogram A. (1997b). Plasmid-mediated mineralization of carbofuran by Sphingomonas sp. strain CF06. Appl Environ Microbiol 63: 1332-1337
    • (1997) Appl Environ Microbiol , vol.63 , pp. 1332-1337
    • Feng, X.1    Ou, L.T.2    Ogram, A.3
  • 51
    • 34248385250 scopus 로고    scopus 로고
    • Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir
    • Feng L, Wang W, Cheng J, Ren Y, Zhao G, Gao C, Tang Y, Liu X, Han W, Peng X, Liu R, Wang L. (2007). Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir. Proc Natl Acad Sci USA 104: 5602-5607
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 5602-5607
    • Feng, L.1    Wang, W.2    Cheng, J.3    Ren, Y.4    Zhao, G.5    Gao, C.6    Tang, Y.7    Liu, X.8    Han, W.9    Peng, X.10    Liu, R.11    Wang, L.12
  • 52
    • 0025169353 scopus 로고
    • Expression of dibenzothiophene-degradative genes in two Pseudomonas species
    • Foght JM, Westlake DW. (1990). Expression of dibenzothiophene-degradative genes in two Pseudomonas species. Can J Microbiol 36: 718-724
    • (1990) Can J Microbiol , vol.36 , pp. 718-724
    • Foght, J.M.1    Westlake, D.W.2
  • 53
    • 0029824723 scopus 로고    scopus 로고
    • Characterization and expression of the plasmid-borne bedd gene from pseudomonas putida ml2, which codes for a nad+-dependent cis -benzene dihydrodiol dehydrogenase
    • Fong KP, Goh CB, Tan HM. (1996). Characterization and expression of the plasmid-borne bedD gene from Pseudomonas putida ML2, which codes for a NAD+-dependent cis -benzene dihydrodiol dehydrogenase. J Bacteriol 178: 5592-5601
    • (1996) J Bacteriol , vol.178 , pp. 5592-5601
    • Fong, K.P.1    Goh, C.B.2    Tan, H.M.3
  • 54
    • 0034052594 scopus 로고    scopus 로고
    • The genes for benzene catabolism in Pseudomonas putida ML2 are fl anked by two copies of the insertion element IS 1489, forming a class-I-type catabolic transposon, Tn 5542
    • Fong KP, Goh CB, Tan HM. (2000). The genes for benzene catabolism in Pseudomonas putida ML2 are fl anked by two copies of the insertion element IS 1489, forming a class-I-type catabolic transposon, Tn 5542. Plasmid 43: 103-110
    • (2000) Plasmid , vol.43 , pp. 103-110
    • Fong, K.P.1    Goh, C.B.2    Tan, H.M.3
  • 55
    • 0023374169 scopus 로고
    • Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradation
    • Frantz B, Chakrabarty AM. (1987). Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradation. Proc Natl Acad Sci USA 84: 4460-4464
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 4460-4464
    • Frantz, B.1    Chakrabarty, A.M.2
  • 56
    • 0025847131 scopus 로고
    • Isolation and characterization of a subsurface bacterium capable of growth on toluene, naphthalene, and other aromatic compounds
    • Fredrickson JK, Brockman FJ, Workman DJ, Li SW, Stevens TO. (1991). Isolation and characterization of a subsurface bacterium capable of growth on toluene, naphthalene, and other aromatic compounds. Appl Environ Microbiol 57: 796-803
    • (1991) Appl Environ Microbiol , vol.57 , pp. 796-803
    • Fredrickson, J.K.1    Brockman, F.J.2    Workman, D.J.3    Li, S.W.4    Stevens, T.O.5
  • 58
    • 0031025515 scopus 로고    scopus 로고
    • Plasmid-encoded genes specifying aniline oxidation from Acinetobacter sp. strain YAA
    • Fujii T, Takeo M, Maeda Y. (1997). Plasmid-encoded genes specifying aniline oxidation from Acinetobacter sp. strain YAA. Microbiology 143 (Pt 1): 93-99
    • (1997) Microbiology , vol.143 , Issue.PT1 , pp. 93-99
    • Fujii, T.1    Takeo, M.2    Maeda, Y.3
  • 59
    • 0031036516 scopus 로고    scopus 로고
    • Nucleotide sequences and regulational analysis of genes involved in conversion of aniline to catechol in Pseudomonas putida UCC22 (pTDN1
    • Fukumori F, Saint CP. (1997). Nucleotide sequences and regulational analysis of genes involved in conversion of aniline to catechol in Pseudomonas putida UCC22 (pTDN1). J Bacteriol 179: 399-408
    • (1997) J Bacteriol , vol.179 , pp. 399-408
    • Fukumori, F.1    Saint, C.P.2
  • 60
    • 0035732078 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the catechol metabolic region of plasmid pTDN1
    • Fukumori F, Saint CP. (2001). Complete nucleotide sequence of the catechol metabolic region of plasmid pTDN1. J Gen Appl Microbiol 47: 329-333
    • (2001) J Gen Appl Microbiol , vol.47 , pp. 329-333
    • Fukumori, F.1    Saint, C.P.2
  • 61
    • 0025731853 scopus 로고
    • Transfer and expression of the catabolic plasmid pBRC60 in wild bacterial recipients in a freshwater ecosystem
    • Fulthorpe RR, Wyndham RC. (1991). Transfer and expression of the catabolic plasmid pBRC60 in wild bacterial recipients in a freshwater ecosystem. Appl Environ Microbiol 57: 1546-1553
    • (1991) Appl Environ Microbiol , vol.57 , pp. 1546-1553
    • Fulthorpe, R.R.1    Wyndham, R.C.2
  • 62
    • 77956300524 scopus 로고    scopus 로고
    • The genes coding for the conversion of carbazole to catechol are fl anked by is 6100 elements in sphingomonas sp strain xldn2-5
    • Gai Z, Wang X, Liu X, Tai C, Tang H, He X, Wu G, Deng Z, Xu P. (2010). The genes coding for the conversion of carbazole to catechol are fl anked by IS 6100 elements in Sphingomonas sp. strain XLDN2-5. PLoS One 5: e10018
    • (2010) Plos One , vol.5 , pp. e10018
    • Gai, Z.1    Wang, X.2    Liu, X.3    Tai, C.4    Tang, H.5    He, X.6    Wu, G.7    Deng, Z.8    Xu, P.9
  • 64
    • 44349111947 scopus 로고    scopus 로고
    • Host and invader impact of transfer of the clc genomic island into pseudomonas aeruginosa pao1
    • Gaillard M, Pernet N, Vogne C, Hagenbüchle O, Van Der Meer JR. (2008). Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1. Proc Natl Acad Sci USA 105: 7058-7063
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 7058-7063
    • Gaillard, M.1    Pernet, N.2    Vogne, C.3    Hagenbüchle, O.4    Van Der Meer, J.R.5
  • 66
    • 64349087867 scopus 로고    scopus 로고
    • The diversity of conjugative relaxases and its application in plasmid classification
    • Garcillán-Barcia MP, Francia MV, De La Cruz F. (2009). The diversity of conjugative relaxases and its application in plasmid classification. FEMS Microbiol Rev 33: 657-687
    • (2009) Fems Microbiol Rev , vol.33 , pp. 657-687
    • Garcillán-Barcia, M.P.1    Francia, M.V.2    De La Cruz, F.3
  • 67
    • 79960966271 scopus 로고    scopus 로고
    • Identification of bacterial plasmids based on mobility and plasmid population biology
    • Garcillán-Barcia MP, Alvarado A, De La Cruz F. (2011). Identification of bacterial plasmids based on mobility and plasmid population biology. FEMS Microbiol Rev 35: 936-956
    • (2011) Fems Microbiol Rev , vol.35 , pp. 936-956
    • Garcillán-Barcia, M.P.1    Alvarado, A.2    De La Cruz, F.3
  • 68
    • 0023928662 scopus 로고
    • Nucleotide homology and organization of chlorocatechol oxidation genes of plasmids pJP4 and pAC27
    • Ghosal D, You IS. (1988). Nucleotide homology and organization of chlorocatechol oxidation genes of plasmids pJP4 and pAC27. Mol Gen Genet 211: 113-120
    • (1988) Mol Gen Genet , vol.211 , pp. 113-120
    • Ghosal, D.1    You, I.S.2
  • 69
    • 0021860737 scopus 로고
    • Genes specifying degradation of 3-chlorobenzoic acid in plasmids pAC27 and pJP4
    • Ghosal D, You IS, Chatterjee DK, Chakrabarty AM. (1985). Genes specifying degradation of 3-chlorobenzoic acid in plasmids pAC27 and pJP4. Proc Natl Acad Sci USA 82: 1638-1642
    • (1985) Proc Natl Acad Sci USA , vol.82 , pp. 1638-1642
    • Ghosal, D.1    You, I.S.2    Chatterjee, D.K.3    Chakrabarty, A.M.4
  • 70
    • 0036800450 scopus 로고    scopus 로고
    • Diversity of transconjugants that acquired plasmid pjp4 or pemt1 after inoculation of a donor strain in the a- and b-horizon of an agricultural soil and description of burkholderia hospita sp nov and burkholderia terricola sp nov
    • Goris J, Dejonghe W, Falsen E, De Clerck E, Geeraerts B, Willems A, Top E, Vandamme P, De Vos P. (2002). Diversity of transconjugants that acquired plasmid pJP4 or pEMT1 after inoculation of a donor strain in the A- and B-horizon of an agricultural soil and description of Burkholderia hospita sp. nov. and Burkholderia terricola sp. nov. Syst Appl Microbiol 25: 340-352
    • (2002) Syst Appl Microbiol , vol.25 , pp. 340-352
    • Goris, J.1    Dejonghe, W.2    Falsen, E.3    De Clerck, E.4    Geeraerts, B.5    Willems, A.6    Top, E.7    Vandamme, P.8    De Vos, P.9
  • 71
    • 0036933239 scopus 로고    scopus 로고
    • Complete sequence of the incp-9 tol plasmid pww0 from pseudomonas putida
    • Greated A, Lambertsen L, Williams PA, Thomas CM. (2002). Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida. Environ Microbiol 4: 856-871
    • (2002) Environ Microbiol , vol.4 , pp. 856-871
    • Greated, A.1    Lambertsen, L.2    Williams, P.A.3    Thomas, C.M.4
  • 72
    • 85158006363 scopus 로고    scopus 로고
    • The movement of Tn 3 -like elements: Transposition and cointegrate resolution
    • Craig NL, Craigie R, Gellert M, Lambowitz AM (eds) Washington DC
    • Grindley NDF. (2002). The movement of Tn 3 -like elements: transposition and cointegrate resolution. In: Craig NL, Craigie R, Gellert M, Lambowitz AM (eds) Mobile DNA II. American Society for Microbiology, Washington, DC, pp 272-302
    • (2002) Mobile DNA II American Society for Microbiology , pp. 272-302
    • Grindley, N.D.F.1
  • 73
    • 0037905748 scopus 로고    scopus 로고
    • Conjugative plasmid transfer in gram-positive bacteria
    • table of contents
    • Grohmann E, Muth G, Espinosa M. (2003). Conjugative plasmid transfer in gram-positive bacteria. Microbiol Mol Biol Rev 67: 277-301, table of contents
    • (2003) Microbiol Mol Biol Rev , vol.67 , pp. 277-301
    • Grohmann, E.1    Muth, G.2    Espinosa, M.3
  • 74
    • 0141852830 scopus 로고    scopus 로고
    • Replication functions of new broad host range plasmids isolated from polluted soils
    • Gstalder ME, Faelen M, Mine N, Top EM, Mergeay M, Couturier M. (2003). Replication functions of new broad host range plasmids isolated from polluted soils. Res Microbiol 154: 499-509
    • (2003) Res Microbiol , vol.154 , pp. 499-509
    • Gstalder, M.E.1    Faelen, M.2    Mine, N.3    Top, E.M.4    Mergeay, M.5    Couturier, M.6
  • 75
    • 80052333445 scopus 로고    scopus 로고
    • The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation
    • Guglielmini J, Quintais L, Garcillán-Barcia MP, De La Cruz F, Rocha EP. (2011). The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation. PLoS Genet 7: e1002222
    • (2011) Plos Genet , vol.7 , pp. e1002222
    • Guglielmini, J.1    Quintais, L.2    Garcillán-Barcia, M.P.3    De La Cruz, F.4    Rocha, E.P.5
  • 76
    • 0037150032 scopus 로고    scopus 로고
    • Sphingomonas sp. strain KA1, carrying a carbazole dioxygenase gene homologue, degrades chlorinated dibenzo- p -dioxins in soil
    • Habe H, Ashikawa Y, Saiki Y, Yoshida T, Nojiri H, Omori T. (2002). Sphingomonas sp. strain KA1, carrying a carbazole dioxygenase gene homologue, degrades chlorinated dibenzo- p -dioxins in soil. FEMS Microbiol Lett 211: 43-49
    • (2002) Fems Microbiol Lett , vol.211 , pp. 43-49
    • Habe, H.1    Ashikawa, Y.2    Saiki, Y.3    Yoshida, T.4    Nojiri, H.5    Omori, T.6
  • 77
    • 27744566414 scopus 로고    scopus 로고
    • The fluorene catabolic linear plasmid in terrabacter sp strain dbf63 carries the beta-ketoadipate pathway genes, pcarhgbdcfij, also found in proteobacteria
    • Habe H, Chung JS, Ishida A, Kasuga K, Ide K, Takemura T, Nojiri H, Yamane H, Omori T. (2005). The fl uorene catabolic linear plasmid in Terrabacter sp. strain DBF63 carries the beta-ketoadipate pathway genes, pcaRHGBDCFIJ, also found in proteobacteria. Microbiology 151: 3713-3722
    • (2005) Microbiology , vol.151 , pp. 3713-3722
    • Habe, H.1    Chung, J.S.2    Ishida, A.3    Kasuga, K.4    Ide, K.5    Takemura, T.6    Nojiri, H.7    Yamane, H.8    Omori, T.9
  • 78
    • 0028097179 scopus 로고
    • Integrons found in different locations have identical 5 ¢ ends but variable 3 ¢ ends
    • Hall RM, Brown HJ, Brookes DE, Stokes HW. (1994). Integrons found in different locations have identical 5 ¢ ends but variable 3 ¢ ends. J Bacteriol 176: 6286-6294
    • (1994) J Bacteriol , vol.176 , pp. 6286-6294
    • Hall, R.M.1    Brown, H.J.2    Brookes, D.E.3    Stokes, H.W.4
  • 79
    • 0022586338 scopus 로고
    • Large plasmids from soil bacteria enriched on halogenated alkanoic acids
    • Hardman DJ, Gowland PC, Slater JH. (1986). Large plasmids from soil bacteria enriched on halogenated alkanoic acids. Appl Environ Microbiol 51: 44-51
    • (1986) Appl Environ Microbiol , vol.51 , pp. 44-51
    • Hardman, D.J.1    Gowland, P.C.2    Slater, J.H.3
  • 80
    • 0036200082 scopus 로고    scopus 로고
    • Nucleotide sequence and genetic structure of a novel carbaryl hydrolase gene (ceha) from rhizobium sp strain ac100
    • Hashimoto M, Fukui M, Hayano K, Hayatsu M. (2002). Nucleotide sequence and genetic structure of a novel carbaryl hydrolase gene (cehA) from Rhizobium sp. strain AC100. Appl Environ Microbiol 68: 1220-1227
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1220-1227
    • Hashimoto, M.1    Fukui, M.2    Hayano, K.3    Hayatsu, M.4
  • 81
    • 0032985527 scopus 로고    scopus 로고
    • Involvement of two plasmids in the degradation of carbaryl by Arthrobacter sp. strain RC100
    • Hayatsu M, Hirano M, Nagata T. (1999). Involvement of two plasmids in the degradation of carbaryl by Arthrobacter sp. strain RC100. Appl Environ Microbiol 65: 1015-1019
    • (1999) Appl Environ Microbiol , vol.65 , pp. 1015-1019
    • Hayatsu, M.1    Hirano, M.2    Nagata, T.3
  • 82
    • 0034038188 scopus 로고    scopus 로고
    • Involvement of two plasmids in fenitrothion degradation by burkholderia sp strain nf100
    • Hayatsu M, Hirano M, Tokuda S. (2000). Involvement of two plasmids in fenitrothion degradation by Burkholderia sp. strain NF100. Appl Environ Microbiol 66: 1737-1740
    • (2000) Appl Environ Microbiol , vol.66 , pp. 1737-1740
    • Hayatsu, M.1    Hirano, M.2    Tokuda, S.3
  • 83
    • 70449127276 scopus 로고    scopus 로고
    • Conjugal transfer and mobilization capacity of the completely sequenced naphthalene plasmid pnah20 from multiplasmid strain pseudomonas fluorescens pc20
    • Heinaru E, Vedler E, Jutkina J, Aava M, Heinaru A. (2009). Conjugal transfer and mobilization capacity of the completely sequenced naphthalene plasmid pNAH20 from multiplasmid strain Pseudomonas fluorescens PC20. FEMS Microbiol Ecol 70: 563-574
    • (2009) Fems Microbiol Ecol , vol.70 , pp. 563-574
    • Heinaru, E.1    Vedler, E.2    Jutkina, J.3    Aava, M.4    Heinaru, A.5
  • 84
    • 0024080481 scopus 로고
    • In vivo generation of R68.45-pPGH1 hybrid plasmids conferring a Phl+ (meta pathway) phenotype
    • Herrmann H, Janke D, Krejsa S, Roy M. (1988). In vivo generation of R68.45-pPGH1 hybrid plasmids conferring a Phl+ (meta pathway) phenotype. Mol Gen Genet 214: 173-176
    • (1988) Mol Gen Genet , vol.214 , pp. 173-176
    • Herrmann, H.1    Janke, D.2    Krejsa, S.3    Roy, M.4
  • 85
    • 38949087846 scopus 로고    scopus 로고
    • Horizontal gene transfer between bacteria
    • Heuer H, Smalla K. (2007). Horizontal gene transfer between bacteria. Environ Biosafety Res 6: 3-13
    • (2007) Environ Biosafety Res , vol.6 , pp. 3-13
    • Heuer, H.1    Smalla, K.2
  • 86
    • 84875657482 scopus 로고    scopus 로고
    • The phn island: A new genomic island encoding catabolism of polynuclear aromatic hydrocarbons
    • Hickey WJ, Chen S, Zhao J. (2012). The phn island: a new genomic island encoding catabolism of polynuclear aromatic hydrocarbons. Front Microbiol 3: 125
    • (2012) Front Microbiol , vol.3 , pp. 125
    • Hickey, W.J.1    Chen, S.2    Zhao, J.3
  • 87
    • 84861112198 scopus 로고    scopus 로고
    • Involvement of two latex-clearing proteins during rubber degradation and insights into the subsequent degradation pathway revealed by the genome sequence of gordonia polyisoprenivorans strain vh2
    • Hiessl S, Schuldes J, Thürmer A, Halbsguth T, Bröker D, Angelov A, Liebl W, Daniel R, Steinbüchel A. (2012). Involvement of two latex-clearing proteins during rubber degradation and insights into the subsequent degradation pathway revealed by the genome sequence of Gordonia polyisoprenivorans strain VH2. Appl Environ Microbiol 74: 2874-2887
    • (2012) Appl Environ Microbiol , vol.74 , pp. 2874-2887
    • Hiessl, S.1    Schuldes, J.2    Thürmer, A.3    Halbsguth, T.4    Bröker, D.5    Angelov, A.6    Liebl, W.7    Daniel, R.8    Steinbüchel, A.9
  • 88
    • 0027738415 scopus 로고
    • Linear plasmids and chromosomes in bacteria
    • Hinnebusch J, Tilly K. (1993). Linear plasmids and chromosomes in bacteria. Mol Microbiol 10: 917-922
    • (1993) Mol Microbiol , vol.10 , pp. 917-922
    • Hinnebusch, J.1    Tilly, K.2
  • 89
    • 0024594798 scopus 로고
    • Characteristics and restriction analysis of the 4-chlorobiphenyl catabolic plasmid, pSS50
    • Hooper SW, Dockendorff TC, Sayler GS. (1989). Characteristics and restriction analysis of the 4-chlorobiphenyl catabolic plasmid, pSS50. Appl Environ Microbiol 55: 1286-1288
    • (1989) Appl Environ Microbiol , vol.55 , pp. 1286-1288
    • Hooper, S.W.1    Dockendorff, T.C.2    Sayler, G.S.3
  • 90
    • 0018942997 scopus 로고
    • Regulation of enzymes of the 3,5-xylenol-degradative pathway in pseudomonas putida: Evidence for a plasmid
    • Hopper DJ, Kemp PD. (1980). Regulation of enzymes of the 3,5-xylenol-degradative pathway in Pseudomonas putida: evidence for a plasmid. J Bacteriol 142: 21-26
    • (1980) J Bacteriol , vol.142 , pp. 21-26
    • Hopper, D.J.1    Kemp, P.D.2
  • 91
    • 0037987884 scopus 로고    scopus 로고
    • The phosphotriesterase gene opdA in Agrobacterium radiobacter P230 is transposable
    • Horne I, Qiu X, Russell RJ, Oakeshott JG. (2003). The phosphotriesterase gene opdA in Agrobacterium radiobacter P230 is transposable. FEMS Microbiol Lett 222: 1-8
    • (2003) Fems Microbiol Lett , vol.222 , pp. 1-8
    • Horne, I.1    Qiu, X.2    Russell, R.J.3    Oakeshott, J.G.4
  • 92
    • 40549131883 scopus 로고    scopus 로고
    • The pva operon is located on the megaplasmid of sphingopyxis sp strain 113p3 and is constitutively expressed, although expression is enhanced by pva
    • Hu X, Mamoto R, Fujioka Y, Tani A, Kimbara K, Kawai F. (2008). The pva operon is located on the megaplasmid of Sphingopyxis sp. strain 113P3 and is constitutively expressed, although expression is enhanced by PVA. Appl Microbiol Biotechnol 78: 685-693
    • (2008) Appl Microbiol Biotechnol , vol.78 , pp. 685-693
    • Hu, X.1    Mamoto, R.2    Fujioka, Y.3    Tani, A.4    Kimbara, K.5    Kawai, F.6
  • 93
    • 0037334848 scopus 로고    scopus 로고
    • Sequence of the 165-kilobase catabolic plasmid pAO1 from Arthrobacter nicotinovorans and Identification of a pAO1-dependent nicotine uptake system
    • Igloi GL, Brandsch R. (2003). Sequence of the 165-kilobase catabolic plasmid pAO1 from Arthrobacter nicotinovorans and Identification of a pAO1-dependent nicotine uptake system. J Bacteriol 185: 1976-1986
    • (2003) J Bacteriol , vol.185 , pp. 1976-1986
    • Igloi, G.L.1    Brandsch, R.2
  • 94
    • 0036324296 scopus 로고    scopus 로고
    • Plasmid-borne genes code for an angular dioxygenase involved in dibenzofuran degradation by Terrabacter sp. strain YK3
    • Iida T, Mukouzaka Y, Nakamura K, Kudo T. (2002). Plasmid-borne genes code for an angular dioxygenase involved in dibenzofuran degradation by Terrabacter sp. strain YK3. Appl Environ Microbiol 68: 3716-3723
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3716-3723
    • Iida, T.1    Mukouzaka, Y.2    Nakamura, K.3    Kudo, T.4
  • 95
    • 78049247494 scopus 로고    scopus 로고
    • Functional characterization of pgkt2, a 182-kilobase plasmid containing the xplab genes, which are involved in the degradation of hexahydro-1,3,5-trinitro-1 3,5-triazine by gordonia sp strain ktr9
    • Indest KJ, Jung CM, Chen HP, Hancock D, Florizone C, Eltis LD, Crocker FH. (2010). Functional characterization of pGKT2, a 182-kilobase plasmid containing the xplAB genes, which are involved in the degradation of hexahydro-1,3,5-trinitro-1,3,5-triazine by Gordonia sp. strain KTR9. Appl Environ Microbiol 76: 6329-6337
    • (2010) Appl Environ Microbiol , vol.76 , pp. 6329-6337
    • Indest, K.J.1    Jung, C.M.2    Chen, H.P.3    Hancock, D.4    Florizone, C.5    Eltis, L.D.6    Crocker, F.H.7
  • 96
    • 81855194283 scopus 로고    scopus 로고
    • Identification and isolation of active N 2 O reducers in rice paddy soil
    • Ishii S, Ohno H, Tsuboi M, Otsuka S, Senoo K. (2011). Identification and isolation of active N 2 O reducers in rice paddy soil. ISME J 5: 1936-1945
    • (2011) ISME J , vol.5 , pp. 1936-1945
    • Ishii, S.1    Ohno, H.2    Tsuboi, M.3    Otsuka, S.4    Senoo, K.5
  • 97
    • 26944490371 scopus 로고    scopus 로고
    • The P-7 incompatibility group plasmids responsible for biodegradation of naphthalene and salicylate in fl uorescent pseudomonads
    • Pleiades publish
    • Izmalkova TY, Sazonova OI, Sokolov SL, Kosheleva IA, Boronin AM. (2005). The P-7 incompatibility group plasmids responsible for biodegradation of naphthalene and salicylate in fl uorescent Pseudomonads. Microbiology (Pleiades publish) 74: 342-348
    • (2005) Microbiology , vol.74 , pp. 342-348
    • Izmalkova, T.Y.1    Sazonova, O.I.2    Sokolov, S.L.3    Kosheleva, I.A.4    Boronin, A.M.5
  • 98
    • 0025187238 scopus 로고
    • Mineralization of orthanilic acid is a plasmid- associated trait in Alcaligenes sp O-1
    • Jahnke M, El-Banna T, Klintworth R, Auling G. (1990). Mineralization of orthanilic acid is a plasmid- associated trait in Alcaligenes sp. O-1. J Gen Microbiol 136: 2241-2249
    • (1990) J Gen Microbiol , vol.136 , pp. 2241-2249
    • Jahnke, M.1    El-Banna, T.2    Klintworth, R.3    Auling, G.4
  • 99
    • 39649116926 scopus 로고    scopus 로고
    • Nucleotide sequence, organization and characterization of the (halo) aromatic acid catabolic plasmid pa81 from achromobacter xylosoxidans a8
    • Jencova V, Strnad H, Chodora Z, Ulbrich P, Vlcek C, Hickey WJ, Paces V. (2008). Nucleotide sequence, organization and characterization of the (halo) aromatic acid catabolic plasmid pA81 from Achromobacter xylosoxidans A8. Res Microbiol 159: 118-127
    • (2008) Res Microbiol , vol.159 , pp. 118-127
    • Jencova, V.1    Strnad, H.2    Chodora, Z.3    Ulbrich, P.4    Vlcek, C.5    Hickey, W.J.6    Paces, V.7
  • 100
    • 0345686678 scopus 로고    scopus 로고
    • Discovery of a bacterium, with distinctive dioxygenase, that is responsible for in situ biodegradation in contaminated sediment
    • Jeon CO, Park W, Padmanabhan P, DeRito C, Snape JR, Madsen EL. (2003). Discovery of a bacterium, with distinctive dioxygenase, that is responsible for in situ biodegradation in contaminated sediment. Proc Natl Acad Sci USA 100: 13591-13596
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 13591-13596
    • Jeon, C.O.1    Park, W.2    Padmanabhan, P.3    Derito, C.4    Snape, J.R.5    Madsen, E.L.6
  • 101
    • 33144455400 scopus 로고    scopus 로고
    • The naphthalene catabolic (nag) genes of polaromonas naphthalenivorans cj2: Evolutionary implications for two gene clusters and novel regulatory control
    • Jeon CO, Park M, Ro HS, Park W, Madsen EL. (2006). The naphthalene catabolic (nag) genes of Polaromonas naphthalenivorans CJ2: evolutionary implications for two gene clusters and novel regulatory control. Appl Environ Microbiol 72: 1086-1095
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1086-1095
    • Jeon, C.O.1    Park, M.2    Ro, H.S.3    Park, W.4    Madsen, E.L.5
  • 102
    • 33845959386 scopus 로고    scopus 로고
    • Transposon-aided capture (traca) of plasmids resident in the human gut mobile metagenome
    • Jones BV, Marchesi JR. (2007). Transposon-aided capture (TRACA) of plasmids resident in the human gut mobile metagenome. Nat Methods 4: 55-61
    • (2007) Nat Methods , vol.4 , pp. 55-61
    • Jones, B.V.1    Marchesi, J.R.2
  • 103
    • 77049127826 scopus 로고    scopus 로고
    • Comparative metagenomic analysis of plasmid encoded functions in the human gut microbiome
    • Jones BV, Sun F, Marchesi JR. (2010). Comparative metagenomic analysis of plasmid encoded functions in the human gut microbiome. BMC Genomics 11: 46
    • (2010) BMC Genomics , vol.11 , pp. 46
    • Jones, B.V.1    Sun, F.2    Marchesi, J.R.3
  • 104
    • 0030945608 scopus 로고    scopus 로고
    • Conjugative plasmids and the degradation of arylsulfonates in Comamonas testosteroni
    • Junker F, Cook AM. (1997). Conjugative plasmids and the degradation of arylsulfonates in Comamonas testosteroni. Appl Environ Microbiol 63: 2403-2410
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2403-2410
    • Junker, F.1    Cook, A.M.2
  • 105
    • 0028016273 scopus 로고
    • Integration and excision of a 2,4-dichlorophenoxyacetic acid-degradative plasmid in Alcaligenes paradoxus and evidence of its natural intergeneric transfer
    • Ka JO, Tiedje JM. (1994). Integration and excision of a 2,4-dichlorophenoxyacetic acid-degradative plasmid in Alcaligenes paradoxus and evidence of its natural intergeneric transfer. J Bacteriol 176: 5284-5289
    • (1994) J Bacteriol , vol.176 , pp. 5284-5289
    • Ka, J.O.1    Tiedje, J.M.2
  • 106
    • 0028029010 scopus 로고
    • Insertion sequence IS 6100 on plasmid pOAD2, which degrades nylon oligomers
    • Kato K, Ohtsuki K, Mitsuda H, Yomo T, Negoro S, Urabe I. (1994). Insertion sequence IS 6100 on plasmid pOAD2, which degrades nylon oligomers. J Bacteriol 176: 1197-1200
    • (1994) J Bacteriol , vol.176 , pp. 1197-1200
    • Kato, K.1    Ohtsuki, K.2    Mitsuda, H.3    Yomo, T.4    Negoro, S.5    Urabe, I.6
  • 107
    • 0028826163 scopus 로고
    • A plasmid encoding enzymes for nylon oligomer degradation: Nucleotide sequence and analysis of pOAD2
    • Kato K, Ohtsuki K, Koda Y, Maekawa T, Yomo T, Negoro S, Urabe I. (1995). A plasmid encoding enzymes for nylon oligomer degradation: nucleotide sequence and analysis of pOAD2. Microbiology 141: 2585-2590
    • (1995) Microbiology , vol.141 , pp. 2585-2590
    • Kato, K.1    Ohtsuki, K.2    Koda, Y.3    Maekawa, T.4    Yomo, T.5    Negoro, S.6    Urabe, I.7
  • 108
    • 0000919770 scopus 로고
    • Isolation and characterization of plasmid puo1 mediating dehalogenation of haloacetate and mercury resistance in moraxella sp
    • Kawasaki H, Yahara H, Tonomura K. (1981). Isolation and characterization of plasmid pUO1 mediating dehalogenation of haloacetate and mercury resistance in Moraxella sp. B. Agric Biol Chem 45: 1477-1481
    • (1981) B. Agric Biol Chem , vol.45 , pp. 1477-1481
    • Kawasaki, H.1    Yahara, H.2    Tonomura, K.3
  • 109
    • 0021868081 scopus 로고
    • Genetic rearrangement of plasmids: In vivo recombination between a dehalogenation plasmid and multiple resistance plasmid rp4 in pseudomonas sp
    • Kawasaki H, Takao M, Koiso A, Tonomura K. (1985). Genetic rearrangement of plasmids: in vivo recombination between a dehalogenation plasmid and multiple resistance plasmid RP4 in Pseudomonas sp. Appl Environ Microbiol 49: 1544-1546
    • (1985) Appl Environ Microbiol , vol.49 , pp. 1544-1546
    • Kawasaki, H.1    Takao, M.2    Koiso, A.3    Tonomura, K.4
  • 110
    • 33746052091 scopus 로고    scopus 로고
    • Identification and functional analysis of the genes for naphthalenesulfonate catabolism by sphingomonas xenophaga bn6
    • Keck A, Conradt D, Mahler A, Stolz A, Mattes R, Klein J. (2006). Identification and functional analysis of the genes for naphthalenesulfonate catabolism by Sphingomonas xenophaga BN6. Microbiology 152: 1929-1940
    • (2006) Microbiology , vol.152 , pp. 1929-1940
    • Keck, A.1    Conradt, D.2    Mahler, A.3    Stolz, A.4    Mattes, R.5    Klein, J.6
  • 111
    • 0022375254 scopus 로고
    • Evolutionary conservation of genes coding for meta pathway enzymes within tol plasmids pww0 and pww53
    • Keil H, Keil S, Pickup RW, Williams PA. (1985). Evolutionary conservation of genes coding for meta pathway enzymes within TOL plasmids pWW0 and pWW53. J Bacteriol 164: 887-895
    • (1985) J Bacteriol , vol.164 , pp. 887-895
    • Keil, H.1    Keil, S.2    Pickup, R.W.3    Williams, P.A.4
  • 112
    • 0023129193 scopus 로고
    • Gene organization of the first catabolic operon of tol plasmid pww53: Production of indigo by the xyla gene product
    • Keil H, Saint CM, Williams PA. (1987). Gene organization of the first catabolic operon of TOL plasmid pWW53: production of indigo by the xylA gene product. J Bacteriol 169: 764-770
    • (1987) J Bacteriol , vol.169 , pp. 764-770
    • Keil, H.1    Saint, C.M.2    Williams, P.A.3
  • 113
    • 0021814122 scopus 로고
    • Stability of a catabolic plasmid in continuous culture
    • Keshavarz T, Lilly MD, Clarke PH. (1985). Stability of a catabolic plasmid in continuous culture. J Gen Microbiol 131: 1193-1203
    • (1985) J Gen Microbiol , vol.131 , pp. 1193-1203
    • Keshavarz, T.1    Lilly, M.D.2    Clarke, P.H.3
  • 114
    • 0029946484 scopus 로고    scopus 로고
    • Studies on the isopropylbenzene 2,3-dioxygenase and the 3-isopropylcatechol 2,3-dioxygenase genes encoded by the linear plasmid of Rhodococcus erythropolis BD2
    • Kesseler M, Dabbs ER, Averhoff B, Gottschalk G. (1996). Studies on the isopropylbenzene 2,3-dioxygenase and the 3-isopropylcatechol 2,3-dioxygenase genes encoded by the linear plasmid of Rhodococcus erythropolis BD2. Microbiology 142: 3241-3251
    • (1996) Microbiology , vol.142 , pp. 3241-3251
    • Kesseler, M.1    Dabbs, E.R.2    Averhoff, B.3    Gottschalk, G.4
  • 115
    • 0035432127 scopus 로고    scopus 로고
    • Multiplicity of aromatic ring hydroxylation dioxygenase genes in a strong PCB degrader, Rhodococcus sp. strain RHA1 demonstrated by denaturing gradient gel electrophoresis
    • Kitagawa W, Suzuki A, Hoaki T, Masai E, Fukuda M. (2001). Multiplicity of aromatic ring hydroxylation dioxygenase genes in a strong PCB degrader, Rhodococcus sp. strain RHA1 demonstrated by denaturing gradient gel electrophoresis. Biosci Biotechnol Biochem 65: 1907-1911
    • (2001) Biosci Biotechnol Biochem , vol.65 , pp. 1907-1911
    • Kitagawa, W.1    Suzuki, A.2    Hoaki, T.3    Masai, E.4    Fukuda, M.5
  • 116
    • 0025028809 scopus 로고
    • Selection of independent plasmids determining phenol degradation in Pseudomonas putida and the cloning and expression of genes encoding phenol monooxygenase and catechol 1,2-dioxygenase
    • Kivisaar M, Hõrak R, Kasak L, Heinaru A, Habicht J. (1990). Selection of independent plasmids determining phenol degradation in Pseudomonas putida and the cloning and expression of genes encoding phenol monooxygenase and catechol 1,2-dioxygenase. Plasmid 24: 25-36
    • (1990) Plasmid , vol.24 , pp. 25-36
    • Kivisaar, M.1    Hõrak, R.2    Kasak, L.3    Heinaru, A.4    Habicht, J.5
  • 117
    • 0025979874 scopus 로고
    • Sequence of the plasmid-encoded catechol 1,2-dioxygenase- expressing gene, pheb, of phenol-degrading pseudomonas sp strain EST1001
    • Kivisaar M, Kasak L, Nurk A. (1991). Sequence of the plasmid-encoded catechol 1,2-dioxygenase- expressing gene, pheB, of phenol-degrading Pseudomonas sp. strain EST1001. Gene 98: 15-20
    • (1991) Gene , vol.98 , pp. 15-20
    • Kivisaar, M.1    Kasak, L.2    Nurk, A.3
  • 118
    • 77957367115 scopus 로고    scopus 로고
    • A novel replicative enzyme encoded by the linear arthrobacter plasmid pal1
    • Kolkenbrock S, Naumann B, Hippler M, Fetzner S. (2010). A novel replicative enzyme encoded by the linear Arthrobacter plasmid pAL1. J Bacteriol 192: 4935-4943
    • (2010) J Bacteriol , vol.192 , pp. 4935-4943
    • Kolkenbrock, S.1    Naumann, B.2    Hippler, M.3    Fetzner, S.4
  • 119
  • 120
    • 0030803913 scopus 로고    scopus 로고
    • Three of the seven bphc genes of rhodococcus erythropolis ta421, isolated from a termite ecosystem, are located on an indigenous plasmid associated with biphenyl degradation
    • Kosono S, Maeda M, Fuji F, Arai H, Kudo T. (1997). Three of the seven bphC genes of Rhodococcus erythropolis TA421, isolated from a termite ecosystem, are located on an indigenous plasmid associated with biphenyl degradation. Appl Environ Microbiol 63: 3282-3285
    • (1997) Appl Environ Microbiol , vol.63 , pp. 3282-3285
    • Kosono, S.1    Maeda, M.2    Fuji, F.3    Arai, H.4    Kudo, T.5
  • 123
    • 0029074374 scopus 로고
    • Plasmid prtl1 controlling 1-chloroalkane degradation by rhodococcus rhodochrous ncimb13064
    • Kulakova AN, Stafford TM, Larkin MJ, Kulakov LA. (1995). Plasmid pRTL1 controlling 1-chloroalkane degradation by Rhodococcus rhodochrous NCIMB13064. Plasmid 33: 208-217
    • (1995) Plasmid , vol.33 , pp. 208-217
    • Kulakova, A.N.1    Stafford, T.M.2    Larkin, M.J.3    Kulakov, L.A.4
  • 124
    • 0031026361 scopus 로고    scopus 로고
    • The plasmid-located haloalkane dehalogenase gene from Rhodococcus rhodochrous NCIMB 13064
    • Kulakova AN, Larkin MJ, Kulakov LA. (1997). The plasmid-located haloalkane dehalogenase gene from Rhodococcus rhodochrous NCIMB 13064. Microbiology 143: 109-115
    • (1997) Microbiology , vol.143 , pp. 109-115
    • Kulakova, A.N.1    Larkin, M.J.2    Kulakov, L.A.3
  • 125
    • 0019506775 scopus 로고
    • Isolation and characterization of spontaneously occurring TOL plasmid mutants of Pseudomonas putida HS1
    • Kunz DA, Chapman PJ. (1981). Isolation and characterization of spontaneously occurring TOL plasmid mutants of Pseudomonas putida HS1. J Bacteriol 146: 952-964
    • (1981) J Bacteriol , vol.146 , pp. 952-964
    • Kunz, D.A.1    Chapman, P.J.2
  • 126
    • 71449106392 scopus 로고    scopus 로고
    • Degradation of chloroaromatics by pseudomonas putida gj31: Assembled route for chlorobenzene degradation encoded by clusters on plasmid pkw1 and the chromosome
    • Kunze M, Zerlin KF, Retzlaff A, Pohl JO, Schmidt E, Janssen DB, Vilchez-Vargas R, Pieper DH, Reineke W. (2009). Degradation of chloroaromatics by Pseudomonas putida GJ31: assembled route for chlorobenzene degradation encoded by clusters on plasmid pKW1 and the chromosome. Microbiology 155: 4069-4083
    • (2009) Microbiology , vol.155 , pp. 4069-4083
    • Kunze, M.1    Zerlin, K.F.2    Retzlaff, A.3    Pohl, J.O.4    Schmidt, E.5    Janssen, D.B.6    Vilchez-Vargas, R.7    Pieper, D.H.8    Reineke, W.9
  • 129
    • 0021017923 scopus 로고
    • Microorganisms and xenobiotic compounds
    • Leisinger T. (1983). Microorganisms and xenobiotic compounds. Experientia 39: 1183-1220
    • (1983) Experientia , vol.39 , pp. 1183-1220
    • Leisinger, T.1
  • 130
    • 3042837371 scopus 로고    scopus 로고
    • Complete nucleotide sequence and organization of the naphthalene catabolic plasmid pND6-1 from Pseudomonas sp. strain ND6
    • Li W, Shi J, Wang X, Han Y, Tong W, Ma L, Liu B, Cai B. (2004). Complete nucleotide sequence and organization of the naphthalene catabolic plasmid pND6-1 from Pseudomonas sp. strain ND6. Gene 336: 231-240
    • (2004) Gene , vol.336 , pp. 231-240
    • Li, W.1    Shi, J.2    Wang, X.3    Han, Y.4    Tong, W.5    Ma, L.6    Liu, B.7    Cai, B.8
  • 131
    • 27144478990 scopus 로고    scopus 로고
    • Chromosome-encoded gene cluster for the metabolic pathway that converts aniline to TCA-cycle intermediates in Delftia tsuruhatensis AD9
    • Liang Q, Takeo M, Chen M, Zhang W, Xu Y, Lin M. (2005). Chromosome-encoded gene cluster for the metabolic pathway that converts aniline to TCA-cycle intermediates in Delftia tsuruhatensis AD9. Microbiology 151: 3435-3446
    • (2005) Microbiology , vol.151 , pp. 3435-3446
    • Liang, Q.1    Takeo, M.2    Chen, M.3    Zhang, W.4    Xu, Y.5    Lin, M.6
  • 132
    • 84862794741 scopus 로고    scopus 로고
    • Characterization of Gordonia sp. strain CC-NAPH129-6 capable of naphthalene degradation
    • Lin CL, Shen FT, Tan CC, Huang CC, Chen BY, Arun AB, Young CC. (2012). Characterization of Gordonia sp. strain CC-NAPH129-6 capable of naphthalene degradation. Microbiol Res 167 (7): 395-404
    • (2012) Microbiol Res , vol.167 , Issue.7 , pp. 395-404
    • Lin, C.L.1    Shen, F.T.2    Tan, C.C.3    Huang, C.C.4    Chen, B.Y.5    Arun, A.B.6    Young, C.C.7
  • 133
    • 3242777038 scopus 로고    scopus 로고
    • Isolation and characterization of polycyclic aromatic hydrocarbonsdegrading sphingomonas sp strain zl5
    • Liu Y, Zhang J, Zhang Z. (2004). Isolation and characterization of polycyclic aromatic hydrocarbonsdegrading Sphingomonas sp. strain ZL5. Biodegradation 15: 205-212
    • (2004) Biodegradation , vol.15 , pp. 205-212
    • Liu, Y.1    Zhang, J.2    Zhang, Z.3
  • 134
    • 23044474431 scopus 로고    scopus 로고
    • Plasmid-borne catabolism of methyl parathion and p -nitrophenol in pseudomonas sp strain wbc-3
    • Liu H, Zhang JJ, Wang SJ, Zhang XE, Zhou NY. (2005). Plasmid-borne catabolism of methyl parathion and p -nitrophenol in Pseudomonas sp. strain WBC-3. Biochem Biophys Res Commun 334: 1107-1114
    • (2005) Biochem Biophys Res Commun , vol.334 , pp. 1107-1114
    • Liu, H.1    Zhang, J.J.2    Wang, S.J.3    Zhang, X.E.4    Zhou, N.Y.5
  • 135
    • 79960082390 scopus 로고    scopus 로고
    • Patchwork assembly of nag -like nitroarene dioxygenase genes and the 3-chlorocatechol degradation cluster for evolution of the 2-chloronitrobenzene catabolism pathway in pseudomonas stutzeri zwlr2-1
    • Liu H, Wang SJ, Zhang JJ, Dai H, Tang H, Zhou NY. (2011). Patchwork assembly of nag -like nitroarene dioxygenase genes and the 3-chlorocatechol degradation cluster for evolution of the 2-chloronitrobenzene catabolism pathway in Pseudomonas stutzeri ZWLR2-1. Appl Environ Microbiol 77: 4547-4552
    • (2011) Appl Environ Microbiol , vol.77 , pp. 4547-4552
    • Liu, H.1    Wang, S.J.2    Zhang, J.J.3    Dai, H.4    Tang, H.5    Zhou, N.Y.6
  • 136
    • 0028055189 scopus 로고
    • Recombination of the bph (biphenyl) catabolic genes from plasmid pww100 and their deletion during growth on benzoate
    • Lloyd-Jones G, De Jong C, Ogden RC, Duetz WA, Williams PA. (1994). Recombination of the bph (Biphenyl) catabolic genes from plasmid pWW100 and their deletion during growth on benzoate. Appl Environ Microbiol 60: 691-696
    • (1994) Appl Environ Microbiol , vol.60 , pp. 691-696
    • Lloyd-Jones, G.1    De Jong, C.2    Ogden, R.C.3    Duetz, W.A.4    Williams, P.A.5
  • 137
    • 84863174887 scopus 로고    scopus 로고
    • Genome sequence of benzo (a) pyrene-degrading bacterium novosphingobium pentaromativorans us6-1
    • Luo YR, Kang SG, Kim SJ, Kim MR, Li N, Lee JH, Kwon KK. (2012). Genome sequence of benzo (a) pyrene-degrading bacterium Novosphingobium pentaromativorans US6-1. J Bacteriol 194: 907
    • (2012) J Bacteriol , vol.194 , pp. 907
    • Luo, Y.R.1    Kang, S.G.2    Kim, S.J.3    Kim, M.R.4    Li, N.5    Lee, J.H.6    Kwon, K.K.7
  • 138
    • 34547188121 scopus 로고    scopus 로고
    • Nucleotide sequence of plasmid pCNB1 from Comamonas strain CNB-1 reveals novel genetic organization and evolution for 4-chloronitrobenzene degradation
    • Ma YF, Wu JF, Wang SY, Jiang CY, Zhang Y, Qi SW, Liu L, Zhao GP, Liu SJ. (2007). Nucleotide sequence of plasmid pCNB1 from Comamonas strain CNB-1 reveals novel genetic organization and evolution for 4-chloronitrobenzene degradation. Appl Environ Microbiol 73: 4477-4483
    • (2007) Appl Environ Microbiol , vol.73 , pp. 4477-4483
    • Ma, Y.F.1    Wu, J.F.2    Wang, S.Y.3    Jiang, C.Y.4    Zhang, Y.5    Qi, S.W.6    Liu, L.7    Zhao, G.P.8    Liu, S.J.9
  • 139
    • 0027787617 scopus 로고
    • Characterization of a new 2,4-dichlorophenoxyacetic acid degrading plasmid pEST4011: Physical map and localization of catabolic genes
    • Mäe A, Marits R, Ausmees N, Kõiv V, Heinaru A. (1993). Characterization of a new 2,4-dichlorophenoxyacetic acid degrading plasmid pEST4011: physical map and localization of catabolic genes. J Gen Microbiol 139: 3165-3170
    • (1993) J Gen Microbiol , vol.139 , pp. 3165-3170
    • Mäe, A.1    Marits, R.2    Ausmees, N.3    Kõiv, V.4    Heinaru, A.5
  • 140
    • 0037423746 scopus 로고    scopus 로고
    • Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pcar1 in pseudomonas resinovorans strain ca10 indicates its mosaicity and the presence of large catabolic transposon tn 4676
    • Maeda K, Nojiri H, Shintani M, Yoshida T, Habe H, Omori T. (2003). Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn 4676. J Mol Biol 326: 21-33
    • (2003) J Mol Biol , vol.326 , pp. 21-33
    • Maeda, K.1    Nojiri, H.2    Shintani, M.3    Yoshida, T.4    Habe, H.5    Omori, T.6
  • 142
    • 12544251874 scopus 로고    scopus 로고
    • Isolation and characterization of tn- dha1, a transposon containing the tetrachloroethene reductive dehalogenase of desul fi tobacterium hafniense strain tce1
    • Maillard J, Regeard C, Holliger C. (2005). Isolation and characterization of Tn- Dha1, a transposon containing the tetrachloroethene reductive dehalogenase of Desul fi tobacterium hafniense strain TCE1. Environ Microbiol 7: 107-117
    • (2005) Environ Microbiol , vol.7 , pp. 107-117
    • Maillard, J.1    Regeard, C.2    Holliger, C.3
  • 143
    • 31044450576 scopus 로고    scopus 로고
    • Plasmid-mediated dimethoate degradation by bacillus licheniformis isolated from a fresh water fi sh labeo rohita
    • Mandal MD, Mandal A, Pal NK. (2005). Plasmid-mediated dimethoate degradation by Bacillus licheniformis isolated from a fresh water fi sh Labeo rohita. J Biomed Biotechnol 3: 280-286
    • (2005) J Biomed Biotechnol , vol.3 , pp. 280-286
    • Mandal, M.D.1    Mandal, A.2    Pal, N.K.3
  • 145
    • 0034811709 scopus 로고    scopus 로고
    • Complete nucleotide sequence and organization of the atrazine catabolic plasmid padp-1 from pseudomonas sp strain adp
    • Martinez B, Tomkins J, Wackett LP, Wing R, Sadowsky MJ. (2001). Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP. J Bacteriol 183: 5684-5697
    • (2001) J Bacteriol , vol.183 , pp. 5684-5697
    • Martinez, B.1    Tomkins, J.2    Wackett, L.P.3    Wing, R.4    Sadowsky, M.J.5
  • 146
    • 0031039131 scopus 로고    scopus 로고
    • The bphdef meta-cleavage pathway genes involved in biphenyl/polychlorinated biphenyl degradation are located on a linear plasmid and separated from the initial bphacb genes in rhodococcus sp strain rha1
    • Masai E, Sugiyama K, Iwashita N, Shimizu S, Hauschild JE, Hatta T, Kimbara K, Yano K, Fukuda M. (1997). The bphDEF meta-cleavage pathway genes involved in biphenyl/polychlorinated biphenyl degradation are located on a linear plasmid and separated from the initial bphACB genes in Rhodococcus sp. strain RHA1. Gene 187: 141-149
    • (1997) Gene , vol.187 , pp. 141-149
    • Masai, E.1    Sugiyama, K.2    Iwashita, N.3    Shimizu, S.4    Hauschild, J.E.5    Hatta, T.6    Kimbara, K.7    Yano, K.8    Fukuda, M.9
  • 149
    • 0032905533 scopus 로고    scopus 로고
    • Tn 4371: A modular structure encoding a phage-like integrase, a pseudomonas -like catabolic pathway, and rp4/ti-like transfer functions
    • Merlin C, Springael D, Toussaint A. (1999). Tn 4371: a modular structure encoding a phage-like integrase, a Pseudomonas -like catabolic pathway, and RP4/Ti-like transfer functions. Plasmid 41: 40-54
    • (1999) Plasmid , vol.41 , pp. 40-54
    • Merlin, C.1    Springael, D.2    Toussaint, A.3
  • 151
    • 47149114402 scopus 로고    scopus 로고
    • Isolation of dibenzofuran-degrading bacterium, nocardioides sp df412, and characterization of its dibenzofuran degradation genes
    • Miyauchi K, Sukda P, Nishida T, Ito E, Matsumoto Y, Masai E, Fukuda M. (2008). Isolation of dibenzofuran-degrading bacterium, Nocardioides sp. DF412, and characterization of its dibenzofuran degradation genes. J Biosci Bioeng 105: 628-635
    • (2008) J Biosci Bioeng , vol.105 , pp. 628-635
    • Miyauchi, K.1    Sukda, P.2    Nishida, T.3    Ito, E.4    Matsumoto, Y.5    Masai, E.6    Fukuda, M.7
  • 152
    • 78751687819 scopus 로고    scopus 로고
    • A dual functional origin of transfer in the ice clc genomic island of pseudomonas knackmussii b13
    • Miyazaki R, Van Der Meer JR. (2011a). A dual functional origin of transfer in the ICE clc genomic island of Pseudomonas knackmussii B13. Mol Microbiol 79: 743-758
    • (2011) Mol Microbiol , vol.79 , pp. 743-758
    • Miyazaki, R.1    Van Der Meer, J.R.2
  • 153
    • 84930904699 scopus 로고    scopus 로고
    • How can a dual orit system contribute to efficient transfer of an integrative and conjugative element?
    • Miyazaki R, Van Der Meer JR. (2011b). How can a dual oriT system contribute to Efficient transfer of an integrative and conjugative element?. Mobile Genet Elem 1: 82-84
    • (2011) Mobile Genet Elem , vol.1 , pp. 82-84
    • Miyazaki, R.1    Van Der Meer, J.R.2
  • 154
    • 33751017401 scopus 로고    scopus 로고
    • Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in gamma-hexachlorocyclohexane degradation
    • Miyazaki R, Sato Y, Ito M, Ohtsubo Y, Nagata Y, Tsuda M. (2006). Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in gamma-hexachlorocyclohexane degradation. Appl Environ Microbiol 72: 6923-6933
    • (2006) Appl Environ Microbiol , vol.72 , pp. 6923-6933
    • Miyazaki, R.1    Sato, Y.2    Ito, M.3    Ohtsubo, Y.4    Nagata, Y.5    Tsuda, M.6
  • 155
    • 0022479569 scopus 로고
    • Identification of a plasmid-borne parathion hydrolase gene from flavobacterium sp by southern hybridization with opd from pseudomonas diminuta
    • Mulbry WW, Karns JS, Kearney PC, Nelson JO, McDaniel CS, Wild JR. (1986). Identification of a plasmid-borne parathion hydrolase gene from Flavobacterium sp. by southern hybridization with opd from Pseudomonas diminuta. Appl Environ Microbiol 51: 926-930
    • (1986) Appl Environ Microbiol , vol.51 , pp. 926-930
    • Mulbry, W.W.1    Karns, J.S.2    Kearney, P.C.3    Nelson, J.O.4    McDaniel, C.S.5    Wild, J.R.6
  • 156
    • 0041778578 scopus 로고
    • Physical comparison of parathion hydrolase plasmids from pseudomonas diminuta and flavobacterium sp
    • Mulbry WW, Kearney PC, Nelson JO, Karns JS. (1987). Physical comparison of parathion hydrolase plasmids from Pseudomonas diminuta and Flavobacterium sp. Plasmid 18: 173-177
    • (1987) Plasmid , vol.18 , pp. 173-177
    • Mulbry, W.W.1    Kearney, P.C.2    Nelson, J.O.3    Karns, J.S.4
  • 157
    • 0037345571 scopus 로고    scopus 로고
    • Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in ralstonia
    • Müller TA, Werlen C, Spain J, Van Der Meer JR. (2003). Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in Ralstonia. Environ Microbiol 5: 163-173
    • (2003) Environ Microbiol , vol.5 , pp. 163-173
    • Müller, T.A.1    Werlen, C.2    Spain, J.3    Van Der Meer, J.R.4
  • 158
    • 33750051966 scopus 로고    scopus 로고
    • Cultivation-independent examination of horizontal transfer and host range of an IncP-1 plasmid among gram-positive and gram-negative bacteria indigenous to the barley rhizosphere
    • Musovic S, Oregaard G, Kroer N, Sørensen SJ. (2006). Cultivation-independent examination of horizontal transfer and host range of an IncP-1 plasmid among gram-positive and gram-negative bacteria indigenous to the barley rhizosphere. Appl Environ Microbiol 72: 6687-6692
    • (2006) Appl Environ Microbiol , vol.72 , pp. 6687-6692
    • Musovic, S.1    Oregaard, G.2    Kroer, N.3    Sørensen, S.J.4
  • 159
    • 77954745754 scopus 로고    scopus 로고
    • Novel assay to assess permissiveness of a soil microbial community toward receipt of mobile genetic elements
    • Musovic S, Dechesne A, Sørensen J, Smets BF. (2010). Novel assay to assess permissiveness of a soil microbial community toward receipt of mobile genetic elements. Appl Environ Microbiol 76: 4813-4818
    • (2010) Appl Environ Microbiol , vol.76 , pp. 4813-4818
    • Musovic, S.1    Dechesne, A.2    Sørensen, J.3    Smets, B.F.4
  • 160
    • 33645074406 scopus 로고    scopus 로고
    • Distribution of gammahexachlorocyclohexane- degrading genes on three replicons in sphingobium japonicum ut26
    • Nagata Y, Kamakura M, Endo R, Miyazaki R, Ohtsubo Y, Tsuda M. (2006). Distribution of gammahexachlorocyclohexane- degrading genes on three replicons in Sphingobium japonicum UT26. FEMS Microbiol Lett 256: 112-118
    • (2006) Fems Microbiol Lett , vol.256 , pp. 112-118
    • Nagata, Y.1    Kamakura, M.2    Endo, R.3    Miyazaki, R.4    Ohtsubo, Y.5    Tsuda, M.6
  • 161
    • 34548312340 scopus 로고    scopus 로고
    • Aerobic degradation of lindane (gammahexachlorocyclohexane) in bacteria and its biochemical and molecular basis
    • Nagata Y, Endo R, Ito M, Ohtsubo Y, Tsuda M. (2007). Aerobic degradation of lindane (gammahexachlorocyclohexane) in bacteria and its biochemical and molecular basis. Appl Microbiol Biotechnol 76: 741-752
    • (2007) Appl Microbiol Biotechnol , vol.76 , pp. 741-752
    • Nagata, Y.1    Endo, R.2    Ito, M.3    Ohtsubo, Y.4    Tsuda, M.5
  • 162
    • 78049378552 scopus 로고    scopus 로고
    • Complete genome sequence of the representative g -hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26
    • Nagata Y, Ohtsubo Y, Endo R, Ichikawa N, Ankai A, Oguchi A, Fukui S, Fujita N, Tsuda M. (2010). Complete genome sequence of the representative g -hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26. J Bacteriol 192: 5852-5853
    • (2010) J Bacteriol , vol.192 , pp. 5852-5853
    • Nagata, Y.1    Ohtsubo, Y.2    Endo, R.3    Ichikawa, N.4    Ankai, A.5    Oguchi, A.6    Fukui, S.7    Fujita, N.8    Tsuda, M.9
  • 163
    • 82955240671 scopus 로고    scopus 로고
    • Genomic organization and genomic structural rearrangements of sphingobium japonicum ut26, an archetypal g -hexachlorocyclohexane-degrading bacterium
    • Nagata Y, Natsui S, Endo R, Ohtsubo Y, Ichikawa N, Ankai A, Oguchi A, Fukui S, Fujita N, Tsuda M. (2011). Genomic organization and genomic structural rearrangements of Sphingobium japonicum UT26, an archetypal g -hexachlorocyclohexane-degrading bacterium. Enzyme Microb Technol 49: 499-508
    • (2011) Enzyme Microb Technol , vol.49 , pp. 499-508
    • Nagata, Y.1    Natsui, S.2    Endo, R.3    Ohtsubo, Y.4    Ichikawa, N.5    Ankai, A.6    Oguchi, A.7    Fukui, S.8    Fujita, N.9    Tsuda, M.10
  • 164
    • 0025940311 scopus 로고
    • Chlorobenzoate catabolic transposon Tn 5271 is a composite class i element with fl anking class II insertion sequences
    • Nakatsu C, Ng J, Singh R, Straus N, Wyndham C. (1991). Chlorobenzoate catabolic transposon Tn 5271 is a composite class I element with fl anking class II insertion sequences. Proc Natl Acad Sci USA 88: 8312-8316
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 8312-8316
    • Nakatsu, C.1    Ng, J.2    Singh, R.3    Straus, N.4    Wyndham, C.5
  • 165
    • 0007689473 scopus 로고
    • Physical map of nylon oligomer degradative plasmid poad2 harbored in flavobacterium sp ki72
    • Negoro S, Okada H. (1982). Physical map of Nylon oligomer degradative plasmid pOAD2 harbored in Flavobacterium sp. KI72. Agric Biol Chem 46: 745-750
    • (1982) Agric Biol Chem , vol.46 , pp. 745-750
    • Negoro, S.1    Okada, H.2
  • 166
    • 0018958497 scopus 로고
    • Plasmid control of 6-aminohexanoic acid cyclic dimer degradation enzymes of flavobacterium sp ki72
    • Negoro S, Shinagawa H, Nakata A, Kinoshita S, Hatozaki T, Okada H. (1980). Plasmid control of 6-aminohexanoic acid cyclic dimer degradation enzymes of Flavobacterium sp. KI72. J Bacteriol 143: 238-245
    • (1980) J Bacteriol , vol.143 , pp. 238-245
    • Negoro, S.1    Shinagawa, H.2    Nakata, A.3    Kinoshita, S.4    Hatozaki, T.5    Okada, H.6
  • 167
    • 0034019603 scopus 로고    scopus 로고
    • A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in pseudomonas putida kf715
    • Nishi A, Tominaga K, Furukawa K. (2000). A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715. J Bacteriol 182: 1949-1955
    • (2000) J Bacteriol , vol.182 , pp. 1949-1955
    • Nishi, A.1    Tominaga, K.2    Furukawa, K.3
  • 168
    • 0034981075 scopus 로고    scopus 로고
    • Genetic characterization and evolutionary implications of a car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10
    • Nojiri H, Sekiguchi H, Maeda K, Urata M, Nakai S, Yoshida T, Habe H, Omori T. (2001). Genetic characterization and evolutionary implications of a car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10. J Bacteriol 183: 3663-3679
    • (2001) J Bacteriol , vol.183 , pp. 3663-3679
    • Nojiri, H.1    Sekiguchi, H.2    Maeda, K.3    Urata, M.4    Nakai, S.5    Yoshida, T.6    Habe, H.7    Omori, T.8
  • 170
    • 2142659318 scopus 로고    scopus 로고
    • Divergence of mobile genetic elements involved in the distribution of xenobiotic-catabolic capacity
    • Nojiri H, Shintani M, Omori T. (2004). Divergence of mobile genetic elements involved in the distribution of xenobiotic-catabolic capacity. Appl Microbiol Biotechnol 64: 154-174
    • (2004) Appl Microbiol Biotechnol , vol.64 , pp. 154-174
    • Nojiri, H.1    Shintani, M.2    Omori, T.3
  • 171
    • 0028874677 scopus 로고
    • Recombination of a 3-chlorobenzoate catabolic plasmid from Alcaligenes eutrophus NH9 mediated by direct repeat elements
    • Ogawa N, Miyashita K. (1995). Recombination of a 3-chlorobenzoate catabolic plasmid from Alcaligenes eutrophus NH9 mediated by direct repeat elements. Appl Environ Microbiol 61: 3788-3795
    • (1995) Appl Environ Microbiol , vol.61 , pp. 3788-3795
    • Ogawa, N.1    Miyashita, K.2
  • 172
    • 0033046674 scopus 로고    scopus 로고
    • The chlorocatechol-catabolic transposon tn 5707 of alcaligenes eutrophus nh9, carrying a gene cluster highly homologous to that in the 1,2,4-trichlorobenzene- degrading bacterium pseudomonas sp strain p51, confers the ability to grow on 3-chlorobenzoate
    • Ogawa N, Miyashita K. (1999). The chlorocatechol-catabolic transposon Tn 5707 of Alcaligenes eutrophus NH9, carrying a gene cluster highly homologous to that in the 1,2,4-trichlorobenzene- degrading bacterium Pseudomonas sp. strain P51, confers the ability to grow on 3-chlorobenzoate. Appl Environ Microbiol 65: 724-731
    • (1999) Appl Environ Microbiol , vol.65 , pp. 724-731
    • Ogawa, N.1    Miyashita, K.2
  • 173
    • 0346666706 scopus 로고    scopus 로고
    • Novel approach to the improvement of biphenyl and polychlorinated biphenyl degradation activity: Promoter implantation by homologous recombination
    • Ohtsubo Y, Shimura M, Delawary M, Kimbara K, Takagi M, Kudo T, Ohta A, Nagata Y. (2003). Novel approach to the improvement of biphenyl and polychlorinated biphenyl degradation activity: promoter implantation by homologous recombination. Appl Environ Microbiol 69: 146-153
    • (2003) Appl Environ Microbiol , vol.69 , pp. 146-153
    • Ohtsubo, Y.1    Shimura, M.2    Delawary, M.3    Kimbara, K.4    Takagi, M.5    Kudo, T.6    Ohta, A.7    Nagata, Y.8
  • 174
    • 33744471909 scopus 로고    scopus 로고
    • Identification of a response regulator gene for catabolite control from a pcb-degrading beta-proteobacteria, acidovorax sp Kks102
    • Ohtsubo Y, Goto H, Nagata Y, Kudo T, Tsuda M. (2006). Identification of a response regulator gene for catabolite control from a PCB-degrading beta-proteobacteria, Acidovorax sp. KKS102. Mol Microbiol 60: 1563-1575
    • (2006) Mol Microbiol , vol.60 , pp. 1563-1575
    • Ohtsubo, Y.1    Goto, H.2    Nagata, Y.3    Kudo, T.4    Tsuda, M.5
  • 175
    • 84866309711 scopus 로고    scopus 로고
    • Conjugal transfer of PCB/biphenyl degradation genes in Acidovorax sp. KKS102 located on integrative and conjugative element
    • Ohtsubo Y, Ishibashi Y, Naganawa H, Hirokawa S, Atobe S, Nagata Y, Tsuda M. (2012). Conjugal transfer of PCB/biphenyl degradation genes in Acidovorax sp. KKS102 located on integrative and conjugative element. J Bacteriol 194 (16): 4237-4248
    • (2012) J Bacteriol , vol.194 , Issue.16 , pp. 4237-4248
    • Ohtsubo, Y.1    Ishibashi, Y.2    Naganawa, H.3    Hirokawa, S.4    Atobe, S.5    Nagata, Y.6    Tsuda, M.7
  • 176
    • 33846796432 scopus 로고    scopus 로고
    • Isolation and characterization of naphthalene-catabolic genes and plasmids from oil-contaminated soil by using two cultivation- independent approaches
    • Ono A, Miyazaki R, Sota M, Ohtsubo Y, Nagata Y, Tsuda M. (2007). Isolation and characterization of naphthalene-catabolic genes and plasmids from oil-contaminated soil by using two cultivation- independent approaches. Appl Microbiol Biotechnol 74: 501-510
    • (2007) Appl Microbiol Biotechnol , vol.74 , pp. 501-510
    • Ono, A.1    Miyazaki, R.2    Sota, M.3    Ohtsubo, Y.4    Nagata, Y.5    Tsuda, M.6
  • 177
    • 14044270156 scopus 로고    scopus 로고
    • Identification of large linear plasmids in Arthrobacter spp. encoding the degradation of quinaldine to anthranilate
    • Overhage J, Sielker S, Homburg S, Parschat K, Fetzner S. (2005). Identification of large linear plasmids in Arthrobacter spp. encoding the degradation of quinaldine to anthranilate. Microbiology 151: 491-500
    • (2005) Microbiology , vol.151 , pp. 491-500
    • Overhage, J.1    Sielker, S.2    Homburg, S.3    Parschat, K.4    Fetzner, S.5
  • 178
    • 79954417871 scopus 로고    scopus 로고
    • Indigenous organophosphate-degrading (opd) plasmid pcms1 of brevundimonas diminuta is self-transmissible and plays a key role in horizontal mobility of the opd gene
    • Pandeeti EV, Chakka D, Pandey JP, Siddavattam D. (2011). Indigenous organophosphate-degrading (opd) plasmid pCMS1 of Brevundimonas diminuta is self-transmissible and plays a key role in horizontal mobility of the opd gene. Plasmid 65: 226-231
    • (2011) Plasmid , vol.65 , pp. 226-231
    • Pandeeti, E.V.1    Chakka, D.2    Pandey, J.P.3    Siddavattam, D.4
  • 179
    • 0033966167 scopus 로고    scopus 로고
    • Identification and characterization of the nitrobenzene catabolic plasmids pNB1 and pNB2 in Pseudomonas putida HS12
    • Park HS, Kim HS. (2000). Identification and characterization of the nitrobenzene catabolic plasmids pNB1 and pNB2 in Pseudomonas putida HS12. J Bacteriol 182: 573-580
    • (2000) J Bacteriol , vol.182 , pp. 573-580
    • Park, H.S.1    Kim, H.S.2
  • 180
    • 0037979182 scopus 로고    scopus 로고
    • Identification and characterization of the conjugal transfer region of the pcg1 plasmid from naphthalenedegrading pseudomonas putida cg1
    • Park W, Jeon CO, Hohnstock-Ashe AM, Winans SC, Zylstra GJ, Madsen EL. (2003). Identification and characterization of the conjugal transfer region of the pCg1 plasmid from naphthalenedegrading Pseudomonas putida Cg1. Appl Environ Microbiol 69: 3263-3271
    • (2003) Appl Environ Microbiol , vol.69 , pp. 3263-3271
    • Park, W.1    Jeon, C.O.2    Hohnstock-Ashe, A.M.3    Winans, S.C.4    Zylstra, G.J.5    Madsen, E.L.6
  • 181
    • 34248402361 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the 113-kilobase linear catabolic plasmid pAL1 of Arthrobacter nitroguajacolicus Rü61a and transcriptional analysis of genes involved in quinaldine degradation
    • Parschat K, Overhage J, Strittmatter AW, Henne A, Gottschalk G, Fetzner S. (2007). Complete nucleotide sequence of the 113-kilobase linear catabolic plasmid pAL1 of Arthrobacter nitroguajacolicus Rü61a and transcriptional analysis of genes involved in quinaldine degradation. J Bacteriol 189: 3855-3867
    • (2007) J Bacteriol , vol.189 , pp. 3855-3867
    • Parschat, K.1    Overhage, J.2    Strittmatter, A.W.3    Henne, A.4    Gottschalk, G.5    Fetzner, S.6
  • 182
    • 0036992974 scopus 로고    scopus 로고
    • The role of cell bioaugmentation and gene bioaugmentation in the remediation of co-contaminated soils
    • Pepper IL, Gentry TJ, Newby DT, Roane TM, Josephson KL. (2002). The role of cell bioaugmentation and gene bioaugmentation in the remediation of co-contaminated soils. Environ Health Perspect 110 (Suppl 6): 943-946
    • (2002) Environ Health Perspect , vol.110 , pp. 943-946
    • Pepper, I.L.1    Gentry, T.J.2    Newby, D.T.3    Roane, T.M.4    Josephson, K.L.5
  • 183
    • 0030780752 scopus 로고    scopus 로고
    • Acquisition of a deliberately introduced phenol degradation operon, pheBA, by different indigenous Pseudomonas species
    • Peters M, Heinaru E, Talpsep E, Wand H, Stottmeister U, Heinaru A, Nurk A. (1997). Acquisition of a deliberately introduced phenol degradation operon, pheBA, by different indigenous Pseudomonas species. Appl Environ Microbiol 63: 4899-4906
    • (1997) Appl Environ Microbiol , vol.63 , pp. 4899-4906
    • Peters, M.1    Heinaru, E.2    Talpsep, E.3    Wand, H.4    Stottmeister, U.5    Heinaru, A.6    Nurk, A.7
  • 184
    • 0036656358 scopus 로고    scopus 로고
    • Complete characterisation of Tn 5530 from Burkholderia cepacia strain 2a (pIJB1) and studies of 2,4-dichlorophenoxyacetate uptake by the organism
    • Poh RP, Smith AR, Bruce IJ. (2002). Complete characterisation of Tn 5530 from Burkholderia cepacia strain 2a (pIJB1) and studies of 2,4-dichlorophenoxyacetate uptake by the organism. Plasmid 48: 1-12
    • (2002) Plasmid , vol.48 , pp. 1-12
    • Poh, R.P.1    Smith, A.R.2    Bruce, I.J.3
  • 186
    • 0031751325 scopus 로고    scopus 로고
    • Chromosomal integration, tandem amplification, and deamplification in pseudomonas putida f1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from pseudomonas sp strain b13
    • Ravatn R, Studer S, Springael D, Zehnder AJ, Van Der Meer JR. (1998a). Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. Strain B13. J Bacteriol 180: 4360-4369
    • (1998) J Bacteriol , vol.180 , pp. 4360-4369
    • Ravatn, R.1    Studer, S.2    Springael, D.3    Zehnder, A.J.4    Van Der Meer, J.R.5
  • 187
    • 0031745938 scopus 로고    scopus 로고
    • Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from pseudomonas sp strain b13 to pseudomonas putida f1 and to indigenous bacteria in laboratory-scale activated-sludge microcosms
    • Ravatn R, Zehnder AJ, Van Der Meer JR. (1998b). Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated-sludge microcosms. Appl Environ Microbiol 64: 2126-2132
    • (1998) Appl Environ Microbiol , vol.64 , pp. 2126-2132
    • Ravatn, R.1    Zehnder, A.J.2    Van Der Meer, J.R.3
  • 188
    • 0015595926 scopus 로고
    • A transmissible plasmid controlling camphor oxidation in pseudomonas putida
    • Rheinwald JG, Chakrabarty AM, Gunsalus IC. (1973). A transmissible plasmid controlling camphor oxidation in Pseudomonas putida. Proc Natl Acad Sci USA 70: 885-889
    • (1973) Proc Natl Acad Sci USA , vol.70 , pp. 885-889
    • Rheinwald, J.G.1    Chakrabarty, A.M.2    Gunsalus, I.C.3
  • 190
    • 77954508295 scopus 로고    scopus 로고
    • Identification of two vicinal operons for the degradation of 2-aminobenzenesulfonate encoded on plasmid psah in alcaligenes sp strain o-1
    • Ruff J, Smits TH, Cook AM, Schleheck D. (2010). Identification of two vicinal operons for the degradation of 2-aminobenzenesulfonate encoded on plasmid pSAH in Alcaligenes sp. strain O-1. Microbiol Res 165: 288-299
    • (2010) Microbiol Res , vol.165 , pp. 288-299
    • Ruff, J.1    Smits, T.H.2    Cook, A.M.3    Schleheck, D.4
  • 191
    • 72849128938 scopus 로고    scopus 로고
    • Novel tn 4371 -ice like element in ralstonia pickettii and genome mining for comparative elements
    • Ryan MP, Pembroke JT, Adley CC. (2009). Novel Tn 4371 -ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol 9: 242
    • (2009) BMC Microbiol , vol.9 , pp. 242
    • Ryan, M.P.1    Pembroke, J.T.2    Adley, C.C.3
  • 192
    • 0032805566 scopus 로고    scopus 로고
    • Degradation of trichloroethene by a linear-plasmid-encoded alkene monooxygenase in rhodococcus corallinus (nocardia corallina) b-276
    • Saeki H, Akira M, Furuhashi K, Averhoff B, Gottschalk G. (1999). Degradation of trichloroethene by a linear-plasmid-encoded alkene monooxygenase in Rhodococcus corallinus (Nocardia corallina) B-276. Microbiology 145: 1721-1730
    • (1999) Microbiology , vol.145 , pp. 1721-1730
    • Saeki, H.1    Akira, M.2    Furuhashi, K.3    Averhoff, B.4    Gottschalk, G.5
  • 193
    • 0025249988 scopus 로고
    • Physical map of the aromatic amine and m -toluate catabolic plasmid pTDN1 in Pseudomonas putida: Location of a unique meta -cleavage pathway
    • Saint CP, McClure NC, Venables WA. (1990). Physical map of the aromatic amine and m -toluate catabolic plasmid pTDN1 in Pseudomonas putida: location of a unique meta -cleavage pathway. J Gen Microbiol 136: 615-625
    • (1990) J Gen Microbiol , vol.136 , pp. 615-625
    • Saint, C.P.1    McClure, N.C.2    Venables, W.A.3
  • 194
    • 0025135456 scopus 로고
    • Invertrons, a class of structurally and functionally related genetic elements that includes linear DNA plasmids, transposable elements, and genomes of adeno-type viruses
    • Sakaguchi K. (1990). Invertrons, a class of structurally and functionally related genetic elements that includes linear DNA plasmids, transposable elements, and genomes of adeno-type viruses. Microbiol Rev 54: 66-74
    • (1990) Microbiol Rev , vol.54 , pp. 66-74
    • Sakaguchi, K.1
  • 195
    • 0036351205 scopus 로고    scopus 로고
    • Diversity of 2,3-dihydroxybiphenyl dioxygenase genes in a strong pcb degrader, rhodococcus sp strain rha1
    • Sakai M, Masai E, Asami H, Sugiyama K, Kimbara K, Fukuda M. (2002). Diversity of 2,3-dihydroxybiphenyl dioxygenase genes in a strong PCB degrader, Rhodococcus sp. strain RHA1. J Biosci Bioeng 93: 421-427
    • (2002) J Biosci Bioeng , vol.93 , pp. 421-427
    • Sakai, M.1    Masai, E.2    Asami, H.3    Sugiyama, K.4    Kimbara, K.5    Fukuda, M.6
  • 196
    • 4644224875 scopus 로고    scopus 로고
    • Localization and characterization of two novel genes encoding stereospecific dioxygenases catalyzing 2 (2,4-dichlorophenoxy) propionate cleavage in delftia acidovorans mc1
    • Schleinitz KM, Kleinsteuber S, Vallaeys T, Babel W. (2004). Localization and characterization of two novel genes encoding stereospecific dioxygenases catalyzing 2 (2,4-dichlorophenoxy) propionate cleavage in Delftia acidovorans MC1. Appl Environ Microbiol 70: 5357-5365
    • (2004) Appl Environ Microbiol , vol.70 , pp. 5357-5365
    • Schleinitz, K.M.1    Kleinsteuber, S.2    Vallaeys, T.3    Babel, W.4
  • 198
    • 65949092317 scopus 로고    scopus 로고
    • Intracellular excision and reintegration dynamics of the ice clc genomic island of pseudomonas knackmussii sp strain b13
    • Sentchilo V, Czechowska K, Pradervand N, Minoia M, Miyazaki R, Van Der Meer JR. (2009). Intracellular excision and reintegration dynamics of the ICE clc genomic island of Pseudomonas knackmussii sp. strain B13. Mol Microbiol 72: 1293-1306
    • (2009) Mol Microbiol , vol.72 , pp. 1293-1306
    • Sentchilo, V.1    Czechowska, K.2    Pradervand, N.3    Minoia, M.4    Miyazaki, R.5    Van Der Meer, J.R.6
  • 200
  • 202
    • 0021948313 scopus 로고
    • Plasmid-mediated mineralization of 4-chlorobiphenyl
    • Shields MS, Hooper SW, Sayler GS. (1985). Plasmid-mediated mineralization of 4-chlorobiphenyl. J Bacteriol 163: 882-889
    • (1985) J Bacteriol , vol.163 , pp. 882-889
    • Shields, M.S.1    Hooper, S.W.2    Sayler, G.S.3
  • 204
    • 0035350114 scopus 로고    scopus 로고
    • Characterization of the 450-kb linear plasmid in a polychlorinated biphenyl degrader, rhodococcus sp strain rha1
    • Shimizu S, Kobayashi H, Masai E, Fukuda M. (2001). Characterization of the 450-kb linear plasmid in a polychlorinated biphenyl degrader, Rhodococcus sp. strain RHA1. Appl Environ Microbiol 67: 2021-2028
    • (2001) Appl Environ Microbiol , vol.67 , pp. 2021-2028
    • Shimizu, S.1    Kobayashi, H.2    Masai, E.3    Fukuda, M.4
  • 205
    • 0042355524 scopus 로고    scopus 로고
    • Carbazole/dioxin-degrading car gene cluster is located on the chromosome of pseudomonas stutzeri strain om1 in a form different from the simple transposition of tn 4676
    • Shintani M, Nojiri H, Yoshida T, Habe H, Omori T. (2003). Carbazole/dioxin-degrading car gene cluster is located on the chromosome of Pseudomonas stutzeri strain OM1 in a form different from the simple transposition of Tn 4676. Biotechnol Lett 25: 1255-1261
    • (2003) Biotechnol Lett , vol.25 , pp. 1255-1261
    • Shintani, M.1    Nojiri, H.2    Yoshida, T.3    Habe, H.4    Omori, T.5
  • 206
    • 18844421873 scopus 로고    scopus 로고
    • Large plasmid pCAR2 and class II transposon Tn 4676 are functional mobile genetic elements to distribute the carbazole/dioxindegradative car gene cluster in different bacteria
    • Shintani M, Yoshida T, Habe H, Omori T, Nojiri H. (2005). Large plasmid pCAR2 and class II transposon Tn 4676 are functional mobile genetic elements to distribute the carbazole/dioxindegradative car gene cluster in different bacteria. Appl Microbiol Biotechnol 67: 370-382
    • (2005) Appl Microbiol Biotechnol , vol.67 , pp. 370-382
    • Shintani, M.1    Yoshida, T.2    Habe, H.3    Omori, T.4    Nojiri, H.5
  • 208
    • 78650037585 scopus 로고    scopus 로고
    • The behavior and significance of degradative plasmids belonging to Inc groups in Pseudomonas within natural environments and microcosms
    • Shintani M, Takahashi Y, Yamane H, Nojiri H. (2010). The behavior and significance of degradative plasmids belonging to Inc groups in Pseudomonas within natural environments and microcosms. Microbes Environ 25: 253-265
    • (2010) Microbes Environ , vol.25 , pp. 253-265
    • Shintani, M.1    Takahashi, Y.2    Yamane, H.3    Nojiri, H.4
  • 209
    • 82555175383 scopus 로고    scopus 로고
    • DNA rearrangement has occurred in the carbazole-degradative plasmid pcar1 and the chromosome of its unsuitable host, pseudomonas fluorescens pf0-1
    • Shintani M, Matsumoto T, Yoshikawa H, Yamane H, Ohkuma M, Nojiri H. (2011). DNA rearrangement has occurred in the carbazole-degradative plasmid pCAR1 and the chromosome of its unsuitable host, Pseudomonas fluorescens Pf0-1. Microbiology 157: 3405-3416
    • (2011) Microbiology , vol.157 , pp. 3405-3416
    • Shintani, M.1    Matsumoto, T.2    Yoshikawa, H.3    Yamane, H.4    Ohkuma, M.5    Nojiri, H.6
  • 210
    • 0034732391 scopus 로고    scopus 로고
    • Physiological and genetic comparison of two aromatic hydrocarbon-degrading sphingomonas strains
    • Shuttleworth KL, Sung J, Kim E, Cerniglia CE. (2000). Physiological and genetic comparison of two aromatic hydrocarbon-degrading Sphingomonas strains. Mol Cells 10: 199-205
    • (2000) Mol Cells , vol.10 , pp. 199-205
    • Shuttleworth, K.L.1    Sung, J.2    Kim, E.3    Cerniglia, C.E.4
  • 211
    • 0038559866 scopus 로고    scopus 로고
    • Transposon-like organization of the plasmid-borne organophosphate degradation (opd) gene cluster found in flavobacterium sp
    • Siddavattam D, Khajamohiddin S, Manavathi B, Pakala SB, Merrick M. (2003). Transposon-like organization of the plasmid-borne organophosphate degradation (opd) gene cluster found in Flavobacterium sp. Appl Environ Microbiol 69: 2533-2539
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2533-2539
    • Siddavattam, D.1    Khajamohiddin, S.2    Manavathi, B.3    Pakala, S.B.4    Merrick, M.5
  • 214
    • 72949124443 scopus 로고    scopus 로고
    • Horizontal gene transfer mediated by plasmids
    • Lipps G (ed) Horizon Scientific Press Norfolk
    • Sota M, Top EM. (2008). Horizontal gene transfer mediated by plasmids. In: Lipps G (ed) Plasmids: current research and future trends. Horizon Scientific Press, Norfolk
    • (2008) Plasmids: Current Research and Future Trends
    • Sota, M.1    Top, E.M.2
  • 215
    • 0036249529 scopus 로고    scopus 로고
    • Characterization of a class ii defective transposon carrying two haloacetate dehalogenase genes from delftia acidovorans plasmid puo1
    • Sota M, Endo M, Nitta K, Kawasaki H, Tsuda M. (2002). Characterization of a class II defective transposon carrying two haloacetate dehalogenase genes from Delftia acidovorans plasmid pUO1. Appl Environ Microbiol 68: 2307-2315
    • (2002) Appl Environ Microbiol , vol.68 , pp. 2307-2315
    • Sota, M.1    Endo, M.2    Nitta, K.3    Kawasaki, H.4    Tsuda, M.5
  • 216
    • 0242575001 scopus 로고    scopus 로고
    • Structure of haloacetate-catabolic incp-1beta plasmid puo1 and genetic mobility of its residing haloacetate-catabolic transposon
    • Sota M, Kawasaki H, Tsuda M. (2003). Structure of haloacetate-catabolic IncP-1beta plasmid pUO1 and genetic mobility of its residing haloacetate-catabolic transposon. J Bacteriol 185: 6741-6745
    • (2003) J Bacteriol , vol.185 , pp. 6741-6745
    • Sota, M.1    Kawasaki, H.2    Tsuda, M.3
  • 217
    • 33744718828 scopus 로고    scopus 로고
    • Genomic and functional analysis of the incp-9 naphthalene-catabolic plasmid nah7 and its transposon tn 4655 suggests catabolic gene spread by a tyrosine recombinase
    • Sota M, Yano H, Ono A, Miyazaki R, Ishii H, Genka H, Top EM, Tsuda M. (2006). Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn 4655 suggests catabolic gene spread by a tyrosine recombinase. J Bacteriol 188: 4057-4067
    • (2006) J Bacteriol , vol.188 , pp. 4057-4067
    • Sota, M.1    Yano, H.2    Ono, A.3    Miyazaki, R.4    Ishii, H.5    Genka, H.6    Top, E.M.7    Tsuda, M.8
  • 218
    • 34247847841 scopus 로고    scopus 로고
    • Region-specific insertion of transposons in combination with selection for high plasmid transferability and stability accounts for the structural similarity of IncP-1 plasmids
    • Sota M, Tsuda M, Yano H, Suzuki H, Forney LJ, Top EM. (2007). Region-specific insertion of transposons in combination with selection for high plasmid transferability and stability accounts for the structural similarity of IncP-1 plasmids. J Bacteriol 189: 3091-3098
    • (2007) J Bacteriol , vol.189 , pp. 3091-3098
    • Sota, M.1    Tsuda, M.2    Yano, H.3    Suzuki, H.4    Forney, L.J.5    Top, E.M.6
  • 219
    • 0027404658 scopus 로고
    • Identification of a catabolic transposon, Tn 4371, carrying biphenyl and 4-chlorobiphenyl degradation genes in Alcaligenes eutrophus A5
    • Springael D, Kreps S, Mergeay M. (1993). Identification of a catabolic transposon, Tn 4371, carrying biphenyl and 4-chlorobiphenyl degradation genes in Alcaligenes eutrophus A5. J Bacteriol 175: 1674-1681
    • (1993) J Bacteriol , vol.175 , pp. 1674-1681
    • Springael, D.1    Kreps, S.2    Mergeay, M.3
  • 220
    • 0036010635 scopus 로고    scopus 로고
    • Community shifts in a seeded 3-chlorobenzoate degrading membrane bio film reactor: Indications for involvement of in situ horizontal transfer of the clc -element from inoculum to contaminant bacteria
    • Springael D, Peys K, Ryngaert A, Van Roy S, Hooyberghs L, Ravatn R, Heyndrickx M, Van Der Meer JR, Vandecasteele C, Mergeay M, Diels L. (2002). Community shifts in a seeded 3-chlorobenzoate degrading membrane bio film reactor: indications for involvement of in situ horizontal transfer of the clc -element from inoculum to contaminant bacteria. Environ Microbiol 4: 70-80
    • (2002) Environ Microbiol , vol.4 , pp. 70-80
    • Springael, D.1    Peys, K.2    Ryngaert, A.3    Van Roy, S.4    Hooyberghs, L.5    Ravatn, R.6    Heyndrickx, M.7    Van Der Meer, J.R.8    Vandecasteele, C.9    Mergeay, M.10    Diels, L.11
  • 221
    • 0023144333 scopus 로고
    • Cloning and expression in escherichia coli of a klebsiella ozaenae plasmid-borne gene encoding a nitrilase specific for the herbicide bromoxynil
    • Stalker DM, McBride KE. (1987). Cloning and expression in Escherichia coli of a Klebsiella ozaenae plasmid-borne gene encoding a nitrilase specific for the herbicide bromoxynil. J Bacteriol 169: 955-960
    • (1987) J Bacteriol , vol.169 , pp. 955-960
    • Stalker, D.M.1    McBride, K.E.2
  • 222
    • 0042389561 scopus 로고    scopus 로고
    • Complete nucleotide sequence and genetic organization of the 210-kilobase linear plasmid of rhodococcus erythropolis bd2
    • Stecker C, Johann A, Herzberg C, Averhoff B, Gottschalk G. (2003). Complete nucleotide sequence and genetic organization of the 210-kilobase linear plasmid of Rhodococcus erythropolis BD2. J Bacteriol 185: 5269-5274
    • (2003) J Bacteriol , vol.185 , pp. 5269-5274
    • Stecker, C.1    Johann, A.2    Herzberg, C.3    Averhoff, B.4    Gottschalk, G.5
  • 223
    • 0029119519 scopus 로고
    • Physical mapping and characterization of a catabolic plasmid from the deep-subsurface bacterium sphingomonas sp strain f199
    • Stillwell LC, Thurston SJ, Schneider RP, Romine MF, Fredrickson JK, Saffer JD. (1995). Physical mapping and characterization of a catabolic plasmid from the deep-subsurface bacterium Sphingomonas sp. strain F199. J Bacteriol 177: 4537-4539
    • (1995) J Bacteriol , vol.177 , pp. 4537-4539
    • Stillwell, L.C.1    Thurston, S.J.2    Schneider, R.P.3    Romine, M.F.4    Fredrickson, J.K.5    Saffer, J.D.6
  • 224
    • 0031710278 scopus 로고    scopus 로고
    • Plasmids responsible for horizontal transfer of naphthalene catabolism genes between bacteria at a coal tar-contaminated site are homologous to pdtg1 from pseudomonas putida ncib 9816-4
    • Stuart-Keil KG, Hohnstock AM, Drees KP, Herrick JB, Madsen EL. (1998). Plasmids responsible for horizontal transfer of naphthalene catabolism genes between bacteria at a coal tar-contaminated site are homologous to pDTG1 from Pseudomonas putida NCIB 9816-4. Appl Environ Microbiol 64: 3633-3640
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3633-3640
    • Stuart-Keil, K.G.1    Hohnstock, A.M.2    Drees, K.P.3    Herrick, J.B.4    Madsen, E.L.5
  • 225
    • 0029090742 scopus 로고
    • Expression of the strA - StrB streptomycin resistance genes in pseudomonas syringae and xanthomonas campestris and characterization of is 6100 in x campestris
    • Sundin GW, Bender CL. (1995). Expression of the strA - strB streptomycin resistance genes in Pseudomonas syringae and Xanthomonas campestris and characterization of IS 6100 in X. campestris. Appl Environ Microbiol 61: 2891-2897
    • (1995) Appl Environ Microbiol , vol.61 , pp. 2891-2897
    • Sundin, G.W.1    Bender, C.L.2
  • 226
    • 50149091263 scopus 로고    scopus 로고
    • Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technology
    • Szczepanowski R, Bekel T, Goesmann A, Krause L, Krömeke H, Kaiser O, Eichler W, Pühler A, Schlüter A. (2008). Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technology. J Biotechnol 136: 54-64
    • (2008) J Biotechnol , vol.136 , pp. 54-64
    • Szczepanowski, R.1    Bekel, T.2    Goesmann, A.3    Krause, L.4    Krömeke, H.5    Kaiser, O.6    Eichler, W.7    Pühler, A.8    Schlüter, A.9
  • 227
    • 79953795366 scopus 로고    scopus 로고
    • The lin genes for g -hexachlorocyclohexane degradation in Sphingomonas sp MM-1 proved to be dispersed across multiple plasmids
    • Tabata M, Endo R, Ito M, Ohtsubo Y, Kumar A, Tsuda M, Nagata Y. (2011). The lin genes for g -hexachlorocyclohexane degradation in Sphingomonas sp. MM-1 proved to be dispersed across multiple plasmids. Biosci Biotechnol Biochem 75: 466-472
    • (2011) Biosci Biotechnol Biochem , vol.75 , pp. 466-472
    • Tabata, M.1    Endo, R.2    Ito, M.3    Ohtsubo, Y.4    Kumar, A.5    Tsuda, M.6    Nagata, Y.7
  • 229
    • 31844453307 scopus 로고    scopus 로고
    • Characterization of methylhydroquinonemetabolizing oxygenase genes encoded on plasmid in burkholderia sp nf100
    • Tago K, Sato J, Takesa H, Kawagishi H, Hayatsu M. (2005). Characterization of methylhydroquinonemetabolizing oxygenase genes encoded on plasmid in Burkholderia sp. NF100. J Biosci Bioeng 100: 517-523
    • (2005) J Biosci Bioeng , vol.100 , pp. 517-523
    • Tago, K.1    Sato, J.2    Takesa, H.3    Kawagishi, H.4    Hayatsu, M.5
  • 230
    • 4544312613 scopus 로고    scopus 로고
    • Multiplicity of 2,3-dihydroxybiphenyl dioxygenase genes in the gram-positive polychlorinated biphenyl degrading bacterium rhodococcus rhodochrous k37
    • Taguchi K, Motoyama M, Kudo T. (2004). Multiplicity of 2,3-dihydroxybiphenyl dioxygenase genes in the Gram-positive polychlorinated biphenyl degrading bacterium Rhodococcus rhodochrous K37. Biosci Biotechnol Biochem 68: 787-795
    • (2004) Biosci Biotechnol Biochem , vol.68 , pp. 787-795
    • Taguchi, K.1    Motoyama, M.2    Kudo, T.3
  • 231
    • 65349135881 scopus 로고    scopus 로고
    • The complete nucleotide sequence of pCAR2: PCAR2 and pCAR1 were structurally identical IncP-7 carbazole degradative plasmids
    • Takahashi Y, Shintani M, Yamane H, Nojiri H. (2009). The complete nucleotide sequence of pCAR2: pCAR2 and pCAR1 were structurally identical IncP-7 carbazole degradative plasmids. Biosci Biotechnol Biochem 73: 744-746
    • (2009) Biosci Biotechnol Biochem , vol.73 , pp. 744-746
    • Takahashi, Y.1    Shintani, M.2    Yamane, H.3    Nojiri, H.4
  • 232
    • 0032898995 scopus 로고    scopus 로고
    • Bacterial catabolic transposons
    • Tan HM. (1999). Bacterial catabolic transposons. Appl Microbiol Biotechnol 51: 1-12
    • (1999) Appl Microbiol Biotechnol , vol.51 , pp. 1-12
    • Tan, H.M.1
  • 233
    • 0025165563 scopus 로고
    • Cloning and expression of the plasmid-encoded benzene dioxygenase genes from Pseudomonas putida ML2
    • Tan HM, Mason JR. (1990). Cloning and expression of the plasmid-encoded benzene dioxygenase genes from Pseudomonas putida ML2. FEMS Microbiol Lett 60: 259-264
    • (1990) Fems Microbiol Lett , vol.60 , pp. 259-264
    • Tan, H.M.1    Mason, J.R.2
  • 234
    • 33847208545 scopus 로고    scopus 로고
    • Structure and conservation of a polyethylene glycol-degradative operon in sphingomonads
    • Tani A, Charoenpanich J, Mori T, Takeichi M, Kimbara K, Kawai F. (2007). Structure and conservation of a polyethylene glycol-degradative operon in sphingomonads. Microbiology 153: 338-346
    • (2007) Microbiology , vol.153 , pp. 338-346
    • Tani, A.1    Charoenpanich, J.2    Mori, T.3    Takeichi, M.4    Kimbara, K.5    Kawai, F.6
  • 235
    • 0036417217 scopus 로고    scopus 로고
    • The 27.8-kb R-plasmid pTET3 from Corynebacterium glutamicum encodes the aminoglycoside adenyltransferase gene cassette aadA9 and the regulated tetracycline Efflux system Tet 33 fl anked by active copies of the widespread insertion sequence IS 6100
    • Tauch A, Götker S, Pühler A, Kalinowski J, Thierbach G. (2002). The 27.8-kb R-plasmid pTET3 from Corynebacterium glutamicum encodes the aminoglycoside adenyltransferase gene cassette aadA9 and the regulated tetracycline Efflux system Tet 33 fl anked by active copies of the widespread insertion sequence IS 6100. Plasmid 48: 117-129
    • (2002) Plasmid , vol.48 , pp. 117-129
    • Tauch, A.1    Götker, S.2    Pühler, A.3    Kalinowski, J.4    Thierbach, G.5
  • 236
    • 0017815582 scopus 로고
    • NIC, a conjugative nicotine-nicotinate degradative plasmid in Pseudomonas convexa
    • Thacker R, Rørvig O, Kahlon P, Gunsalus IC. (1978). NIC, a conjugative nicotine-nicotinate degradative plasmid in Pseudomonas convexa. J Bacteriol 135: 289-290
    • (1978) J Bacteriol , vol.135 , pp. 289-290
    • Thacker, R.1    Rørvig, O.2    Kahlon, P.3    Gunsalus, I.C.4
  • 237
    • 32644485706 scopus 로고    scopus 로고
    • Plasmids of the genus Pseudomonas
    • Ramos J-L (ed) Kluwer Academic/Plenum Publishers, New York
    • Thomas CM, Haines AS. (2004). Plasmids of the genus Pseudomonas. In: Ramos J-L (ed) Pseudomonas. Kluwer Academic/Plenum Publishers, New York
    • (2004) Pseudomonas
    • Thomas, C.M.1    Haines, A.S.2
  • 238
    • 0038820052 scopus 로고    scopus 로고
    • The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds
    • Top EM, Springael D. (2003). The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds. Curr Opin Biotechnol 14: 262-269
    • (2003) Curr Opin Biotechnol , vol.14 , pp. 262-269
    • Top, E.M.1    Springael, D.2
  • 239
    • 0029020201 scopus 로고
    • Characterization of diverse 2,4-dichlorophenoxyacetic acid-degradative plasmids isolated from soil by complementation
    • Top EM, Holben WE, Forney LJ. (1995). Characterization of diverse 2,4-dichlorophenoxyacetic acid-degradative plasmids isolated from soil by complementation. Appl Environ Microbiol 61: 1691-1698
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1691-1698
    • Top, E.M.1    Holben, W.E.2    Forney, L.J.3
  • 240
    • 0029900988 scopus 로고    scopus 로고
    • Capture of a catabolic plasmid that encodes only 2,4-dichlorophenoxyacetic acid: Alpha-ketoglutaric acid dioxygenase (TfdA) by genetic complementation
    • Top EM, Maltseva OV, Forney LJ. (1996). Capture of a catabolic plasmid that encodes only 2,4-dichlorophenoxyacetic acid: alpha-ketoglutaric acid dioxygenase (TfdA) by genetic complementation. Appl Environ Microbiol 62: 2470-2476
    • (1996) Appl Environ Microbiol , vol.62 , pp. 2470-2476
    • Top, E.M.1    Maltseva, O.V.2    Forney, L.J.3
  • 242
    • 0036848574 scopus 로고    scopus 로고
    • Catabolic mobile genetic elements and their potential use in bioaugmentation of polluted soils and waters
    • Top EM, Springael D, Boon N. (2002). Catabolic mobile genetic elements and their potential use in bioaugmentation of polluted soils and waters. FEMS Microbiol Ecol 42: 199-208
    • (2002) Fems Microbiol Ecol , vol.42 , pp. 199-208
    • Top, E.M.1    Springael, D.2    Boon, N.3
  • 243
    • 0038018390 scopus 로고    scopus 로고
    • The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn 4371, a member of a new family of genomic islands related to incp and ti plasmids
    • Toussaint A, Merlin C, Monchy S, Benotmane MA, Leplae R, Mergeay M, Springael D. (2003). The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn 4371, a member of a new family of genomic islands related to IncP and Ti plasmids. Appl Environ Microbiol 69: 4837-4845
    • (2003) Appl Environ Microbiol , vol.69 , pp. 4837-4845
    • Toussaint, A.1    Merlin, C.2    Monchy, S.3    Benotmane, M.A.4    Leplae, R.5    Mergeay, M.6    Springael, D.7
  • 244
    • 0035318462 scopus 로고    scopus 로고
    • Map of the IncP1beta plasmid pTSA encoding the widespread genes (tsa) for p -toluenesulfonate degradation in Comamonas testosteroni T-2
    • Tralau T, Cook AM, Ruff J. (2001). Map of the IncP1beta plasmid pTSA encoding the widespread genes (tsa) for p -toluenesulfonate degradation in Comamonas testosteroni T-2. Appl Environ Microbiol 67: 1508-1516
    • (2001) Appl Environ Microbiol , vol.67 , pp. 1508-1516
    • Tralau, T.1    Cook, A.M.2    Ruff, J.3
  • 245
    • 3042826882 scopus 로고    scopus 로고
    • Genetic organization of the catabolic plasmid pjp4 from ralstonia eutropha jmp134 (pjp4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways
    • Trefault N, De La Iglesia R, Molina AM, Manzano M, Ledger T, Pérez-Pantoja D, Sánchez MA, Stuardo M, González B. (2004). Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways. Environ Microbiol 6: 655-668
    • (2004) Environ Microbiol , vol.6 , pp. 655-668
    • Trefault, N.1    De La Iglesia, R.2    Molina, A.M.3    Manzano, M.4    Ledger, T.5    Pérez-Pantoja, D.6    Sánchez, M.A.7    Stuardo, M.8    González, B.9
  • 246
    • 0035688599 scopus 로고    scopus 로고
    • Identification and characterization of tn 4656, a novel class ii transposon carrying a set of toluene-degrading genes from tol plasmid pww53
    • Tsuda M, Genka H. (2001). Identification and characterization of Tn 4656, a novel class II transposon carrying a set of toluene-degrading genes from TOL plasmid pWW53. J Bacteriol 183: 6215-6224
    • (2001) J Bacteriol , vol.183 , pp. 6215-6224
    • Tsuda, M.1    Genka, H.2
  • 247
    • 0023504678 scopus 로고
    • Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWW0
    • Tsuda M, Iino T. (1987). Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWW0. Mol Gen Genet 210: 270-276
    • (1987) Mol Gen Genet , vol.210 , pp. 270-276
    • Tsuda, M.1    Iino, T.2
  • 248
    • 0024046404 scopus 로고
    • Identification and characterization of tn 4653, a transposon covering the toluene transposon tn 4651 on tol plasmid pww0
    • Tsuda M, Iino T. (1988). Identification and characterization of Tn 4653, a transposon covering the toluene transposon Tn 4651 on TOL plasmid pWW0. Mol Gen Genet 213: 72-77
    • (1988) Mol Gen Genet , vol.213 , pp. 72-77
    • Tsuda, M.1    Iino, T.2
  • 249
    • 0025073507 scopus 로고
    • Naphthalene degrading genes on plasmid NAH7 are on a defective transposon
    • Tsuda M, Iino T. (1990). Naphthalene degrading genes on plasmid NAH7 are on a defective transposon. Mol Gen Genet 223: 33-39
    • (1990) Mol Gen Genet , vol.223 , pp. 33-39
    • Tsuda, M.1    Iino, T.2
  • 250
    • 0024574036 scopus 로고
    • Toluene transposons Tn 4651 and Tn 4653 are class II transposons
    • Tsuda M, Minegishi K, Iino T. (1989). Toluene transposons Tn 4651 and Tn 4653 are class II transposons. J Bacteriol 171: 1386-1393
    • (1989) J Bacteriol , vol.171 , pp. 1386-1393
    • Tsuda, M.1    Minegishi, K.2    Iino, T.3
  • 251
    • 0034655510 scopus 로고    scopus 로고
    • Characterization of the naphthalene-degrading bacterium, Rhodococcus opacus M213
    • Uz I, Duan YP, Ogram A. (2000). Characterization of the naphthalene-degrading bacterium, Rhodococcus opacus M213. FEMS Microbiol Lett 185: 231-238
    • (2000) Fems Microbiol Lett , vol.185 , pp. 231-238
    • Uz, I.1    Duan, Y.P.2    Ogram, A.3
  • 252
    • 0034969905 scopus 로고    scopus 로고
    • Analysis of pseudomonas putida alkane-degradation gene clusters and fl anking insertion sequences: Evolution and regulation of the alk genes
    • Van Beilen JB, Panke S, Lucchini S, Franchini AG, Röthlisberger M, Witholt B. (2001). Analysis of Pseudomonas putida alkane-degradation gene clusters and fl anking insertion sequences: evolution and regulation of the alk genes. Microbiology 147: 1621-1630
    • (2001) Microbiology , vol.147 , pp. 1621-1630
    • Van Beilen, J.B.1    Panke, S.2    Lucchini, S.3    Franchini, A.G.4    Röthlisberger, M.5    Witholt, B.6
  • 253
    • 0038504021 scopus 로고    scopus 로고
    • Genomic islands and the evolution of catabolic pathways in bacteria
    • Van Der Meer JR, Sentchilo V. (2003). Genomic islands and the evolution of catabolic pathways in bacteria. Curr Opin Biotechnol 14: 248-254
    • (2003) Curr Opin Biotechnol , vol.14 , pp. 248-254
    • Van Der Meer, J.R.1    Sentchilo, V.2
  • 254
    • 0025719238 scopus 로고
    • Identification of a novel composite transposable element, Tn 5280, carrying chlorobenzene dioxygenase genes of Pseudomonas sp strain P51
    • Van Der Meer JR, Zehnder AJ, De Vos WM. (1991a). Identification of a novel composite transposable element, Tn 5280, carrying chlorobenzene dioxygenase genes of Pseudomonas sp. strain P51. J Bacteriol 173: 7077-7083
    • (1991) J Bacteriol , vol.173 , pp. 7077-7083
    • Van Der Meer, J.R.1    Zehnder, A.J.2    De Vos, W.M.3
  • 255
    • 0025961110 scopus 로고
    • Cloning and characterization of plasmid-encoded genes for the degradation of 1,2-dichloro-, 1,4-dichloro-, and 1,2,4-trichlorobenzene of Pseudomonas sp. strain P51
    • Van Der Meer JR, Van Neerven AR, De Vries EJ, De Vos WM, Zehnder AJ. (1991b). Cloning and characterization of plasmid-encoded genes for the degradation of 1,2-dichloro-, 1,4-dichloro-, and 1,2,4-trichlorobenzene of Pseudomonas sp. strain P51. J Bacteriol 173: 6-15
    • (1991) J Bacteriol , vol.173 , pp. 6-15
    • Van Der Meer, J.R.1    Van Neerven, A.R.2    De Vries, E.J.3    De Vos, W.M.4    Zehnder, A.J.5
  • 256
    • 0028949105 scopus 로고
    • Adaptation of xanthobacter autotrophicus gj10 to bromoacetate due to activation and mobilization of the haloacetate dehalogenase gene by insertion element is 1247
    • Van Der Ploeg J, Willemsen M, Van Hall G, Janssen DB. (1995). Adaptation of Xanthobacter autotrophicus GJ10 to bromoacetate due to activation and mobilization of the haloacetate dehalogenase gene by insertion element IS 1247. J Bacteriol 177: 1348-1356
    • (1995) J Bacteriol , vol.177 , pp. 1348-1356
    • Van Der Ploeg, J.1    Willemsen, M.2    Van Hall, G.3    Janssen, D.B.4
  • 257
    • 0342844467 scopus 로고    scopus 로고
    • Analysis of the 2,4-dichlorophenoxyacetic acid-degradative plasmid pest4011 of achromobacter xylosoxidans subsp denitri fi cans strain est4002
    • Vedler E, Kõiv V, Heinaru A. (2000). Analysis of the 2,4-dichlorophenoxyacetic acid-degradative plasmid pEST4011 of Achromobacter xylosoxidans subsp. denitri fi cans strain EST4002. Gene 255: 281-288
    • (2000) Gene , vol.255 , pp. 281-288
    • Vedler, E.1    Kõiv, V.2    Heinaru, A.3
  • 258
    • 6044272942 scopus 로고    scopus 로고
    • The completely sequenced plasmid pEST4011 contains a novel IncP1 backbone and a catabolic transposon harboring tfd genes for 2,4-dichlorophenoxyacetic acid degradation
    • Vedler E, Vahter M, Heinaru A. (2004). The completely sequenced plasmid pEST4011 contains a novel IncP1 backbone and a catabolic transposon harboring tfd genes for 2,4-dichlorophenoxyacetic acid degradation. J Bacteriol 186: 7161-7174
    • (2004) J Bacteriol , vol.186 , pp. 7161-7174
    • Vedler, E.1    Vahter, M.2    Heinaru, A.3
  • 259
    • 79551482446 scopus 로고    scopus 로고
    • Replication-involved genes of pAL1, the linear plasmid of Arthrobacter nitroguajacolicus rü61a - Phylogenetic and transcriptional analysis
    • Wagenknecht M, Meinhardt F. (2011). Replication-involved genes of pAL1, the linear plasmid of Arthrobacter nitroguajacolicus Rü61a - phylogenetic and transcriptional analysis. Plasmid 65: 176-184
    • (2011) Plasmid , vol.65 , pp. 176-184
    • Wagenknecht, M.1    Meinhardt, F.2
  • 260
    • 65249170112 scopus 로고    scopus 로고
    • A novel nicotine catabolic plasmid pMH1 in Pseudomonas sp. strain HF-1
    • Wang M, Yang G, Min H, Lv Z. (2009). A novel nicotine catabolic plasmid pMH1 in Pseudomonas sp. strain HF-1. Can J Microbiol 55: 228-233
    • (2009) Can J Microbiol , vol.55 , pp. 228-233
    • Wang, M.1    Yang, G.2    Min, H.3    Lv, Z.4
  • 261
    • 80054102805 scopus 로고    scopus 로고
    • Isolation of bacterial extrachromosomal DNA from human dental plaque associated with periodontal disease, using transposon-aided capture (traca
    • Warburton PJ, Allan E, Hunter S, Ward J, Booth V, Wade WG, Mullany P. (2011). Isolation of bacterial extrachromosomal DNA from human dental plaque associated with periodontal disease, using transposon-aided capture (TRACA). FEMS Microbiol Ecol 78: 349-354
    • (2011) Fems Microbiol Ecol , vol.78 , pp. 349-354
    • Warburton, P.J.1    Allan, E.2    Hunter, S.3    Ward, J.4    Booth, V.5    Wade, W.G.6    Mullany, P.7
  • 263
    • 59349091203 scopus 로고    scopus 로고
    • A transposable class i composite transposon carrying mph (methyl parathion hydrolase) from pseudomonas sp strain wbc-3
    • Wei M, Zhang JJ, Liu H, Wang SJ, Fu H, Zhou NY. (2009). A transposable class I composite transposon carrying mph (methyl parathion hydrolase) from Pseudomonas sp. strain WBC-3. FEMS Microbiol Lett 292: 85-91
    • (2009) Fems Microbiol Lett , vol.292 , pp. 85-91
    • Wei, M.1    Zhang, J.J.2    Liu, H.3    Wang, S.J.4    Fu, H.5    Zhou, N.Y.6
  • 264
    • 0036889485 scopus 로고    scopus 로고
    • Transposition of DEH, a broad-host-range transposon fl anked by IS Ppu12, in Pseudomonas putida is associated with genomic rearrangements and dehalogenase gene silencing
    • Weightman AJ, Topping AW, Hill KE, Lee LL, Sakai K, Slater JH, Thomas AW. (2002). Transposition of DEH, a broad-host-range transposon fl anked by IS Ppu12, in Pseudomonas putida is associated with genomic rearrangements and dehalogenase gene silencing. J Bacteriol 184: 6581-6591
    • (2002) J Bacteriol , vol.184 , pp. 6581-6591
    • Weightman, A.J.1    Topping, A.W.2    Hill, K.E.3    Lee, L.L.4    Sakai, K.5    Slater, J.H.6    Thomas, A.W.7
  • 265
    • 0016197816 scopus 로고
    • Metabolism of benzoate and the methylbenzoates by pseudomonas putida (arvilla) mt-2: Evidence for the existence of a tol plasmid
    • Williams PA, Murray K. (1974). Metabolism of benzoate and the methylbenzoates by Pseudomonas putida (arvilla) mt-2: evidence for the existence of a TOL plasmid. J Bacteriol 120: 416-423
    • (1974) J Bacteriol , vol.120 , pp. 416-423
    • Williams, P.A.1    Murray, K.2
  • 266
    • 0023403379 scopus 로고
    • PWW174: A large plasmid from Acinetobacter calcoaceticus encoding benzene catabolism by the beta-ketoadipate pathway
    • Winstanley C, Taylor SC, Williams PA. (1987). pWW174: a large plasmid from Acinetobacter calcoaceticus encoding benzene catabolism by the beta-ketoadipate pathway. Mol Microbiol 1: 219-227
    • (1987) Mol Microbiol , vol.1 , pp. 219-227
    • Winstanley, C.1    Taylor, S.C.2    Williams, P.A.3
  • 267
    • 77954761569 scopus 로고    scopus 로고
    • Integrative and conjugative elements: Mosaic mobile genetic elements enabling dynamic lateral gene flow
    • Wozniak RA, Waldor MK. (2010). Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow. Nat Rev Microbiol 8: 552-563
    • (2010) Nat Rev Microbiol , vol.8 , pp. 552-563
    • Wozniak, R.A.1    Waldor, M.K.2
  • 268
    • 12444261679 scopus 로고    scopus 로고
    • A novel 2-aminophenol 1,6-dioxygenase involved in the degradation of p -chloronitrobenzene by comamonas strain cnb-1: Purification, properties, genetic cloning and expression in escherichia coli
    • Wu JF, Sun CW, Jiang CY, Liu ZP, Liu SJ. (2005). A novel 2-aminophenol 1,6-dioxygenase involved in the degradation of p -chloronitrobenzene by Comamonas strain CNB-1: Purification, properties, genetic cloning and expression in Escherichia coli. Arch Microbiol 183: 1-8
    • (2005) Arch Microbiol , vol.183 , pp. 1-8
    • Wu, J.F.1    Sun, C.W.2    Jiang, C.Y.3    Liu, Z.P.4    Liu, S.J.5
  • 269
    • 33644951182 scopus 로고    scopus 로고
    • Novel partial reductive pathway for 4-chloronitrobenzene and nitrobenzene degradation in comamonas sp strain cnb-1
    • Wu JF, Jiang CY, Wang BJ, Ma YF, Liu ZP, Liu SJ. (2006). Novel partial reductive pathway for 4-chloronitrobenzene and nitrobenzene degradation in Comamonas sp. strain CNB-1. Appl Environ Microbiol 72: 1759-1765
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1759-1765
    • Wu, J.F.1    Jiang, C.Y.2    Wang, B.J.3    Ma, Y.F.4    Liu, Z.P.5    Liu, S.J.6
  • 270
    • 0031917050 scopus 로고    scopus 로고
    • A novel plasmid pIJB1 possessing a putative 2,4-dichlorophenoxyacetate degradative transposon Tn 5530 in Burkholderia cepacia strain 2a
    • Xia XS, Aathithan S, Oswiecimska K, Smith AR, Bruce IJ. (1998). A novel plasmid pIJB1 possessing a putative 2,4-dichlorophenoxyacetate degradative transposon Tn 5530 in Burkholderia cepacia strain 2a. Plasmid 39: 154-159
    • (1998) Plasmid , vol.39 , pp. 154-159
    • Xia, X.S.1    Aathithan, S.2    Oswiecimska, K.3    Smith, A.R.4    Bruce, I.J.5
  • 271
    • 69949092042 scopus 로고    scopus 로고
    • The genome of polaromonas naphthalenivorans strain cj2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
    • Yagi JM, Sims D, Brettin T, Bruce D, Madsen EL. (2009). The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer. Environ Microbiol 11: 2253-2270
    • (2009) Environ Microbiol , vol.11 , pp. 2253-2270
    • Yagi, J.M.1    Sims, D.2    Brettin, T.3    Bruce, D.4    Madsen, E.L.5
  • 272
    • 0018970655 scopus 로고
    • PKJ1, a naturally occurring conjugative plasmid coding for toluene degradation and resistance to streptomycin and sulfonamides
    • Yano K, Nishi T. (1980). pKJ1, a naturally occurring conjugative plasmid coding for toluene degradation and resistance to streptomycin and sulfonamides. J Bacteriol 143: 552-560
    • (1980) J Bacteriol , vol.143 , pp. 552-560
    • Yano, K.1    Nishi, T.2
  • 273
    • 34247358195 scopus 로고    scopus 로고
    • Complete sequence determination combined with analysis of transposition/site-specific recombination events to explain genetic organization of incp-7 tol plasmid pww53 and related mobile genetic elements
    • Yano H, Garruto C, Sota M, Ohtsubo Y, Nagata Y, Zylstra G, Williams P, Tsuda M. (2007). Complete sequence determination combined with analysis of transposition/site-specific recombination events to explain genetic organization of IncP-7 TOL plasmid pWW53 and related mobile genetic elements. J Mol Biol 369: 11-26
    • (2007) J Mol Biol , vol.369 , pp. 11-26
    • Yano, H.1    Garruto, C.2    Sota, M.3    Ohtsubo, Y.4    Nagata, Y.5    Zylstra, G.6    Williams, P.7    Tsuda, M.8
  • 274
    • 77956548642 scopus 로고    scopus 로고
    • Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmids
    • Yano H, Miyakoshi M, Ohshima K, Tabata M, Nagata Y, Hattori M, Tsuda M. (2010). Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmids. J Bacteriol 192: 4337-4347
    • (2010) J Bacteriol , vol.192 , pp. 4337-4347
    • Yano, H.1    Miyakoshi, M.2    Ohshima, K.3    Tabata, M.4    Nagata, Y.5    Hattori, M.6    Tsuda, M.7
  • 275
    • 84855714036 scopus 로고    scopus 로고
    • Metagenomic analysis of the bioremediation of diesel-contaminated canadian high arctic soils
    • Yergeau E, Sanschagrin S, Beaumier D, Greer CW. (2012). Metagenomic analysis of the bioremediation of diesel-contaminated Canadian high arctic soils. PLoS One 7: e30058
    • (2012) Plos One , vol.7 , pp. e30058
    • Yergeau, E.1    Sanschagrin, S.2    Beaumier, D.3    Greer, C.W.4
  • 276
    • 80053908791 scopus 로고    scopus 로고
    • Plasmid metagenome reveals high levels of antibiotic resistance genes and mobile genetic elements in activated sludge
    • Zhang T, Zhang XX, Ye L. (2011a). Plasmid metagenome reveals high levels of antibiotic resistance genes and mobile genetic elements in activated sludge. PLoS One 6: e26041
    • (2011) Plos One , vol.6 , pp. e26041
    • Zhang, T.1    Zhang, X.X.2    Ye, L.3
  • 277
    • 84871720631 scopus 로고    scopus 로고
    • Chemotaxis to atrazine and detection of a xenobiotic catabolic plasmid in arthrobacter sp dns10
    • Epub 2012 Feb 17
    • Zhang Y, Jiang Z, Cao B, Hu M, Wang Z, Dong X. (2011b). Chemotaxis to atrazine and detection of a xenobiotic catabolic plasmid in Arthrobacter sp DNS10. Environ Sci Pollut Res Int 19 (7): 2951-8, Epub 2012 Feb 17
    • (2011) Environ Sci Pollut Res Int , vol.19 , Issue.7 , pp. 2951-2958
    • Zhang, Y.1    Jiang, Z.2    Cao, B.3    Hu, M.4    Wang, Z.5    Dong, X.6


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