Isolation and characterization of polycyclic aromatic hydrocarbons- degrading Sphingomonas sp. strain ZL5

Biodegradation

Volumn 15, Issue 3, 2004, Pages 205-212

  Liu, Yongsheng ^a,b   Zhang, Jie ^b   Zhang, Zhongze ^a  

^a INSTITUTE OF APPLIED ECOLOGY   (China)

^b INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

Biodegradation; Catechol 2,3 dioxygenase; Degradative plasmid; Overexpression; Polycyclic aromatic hydrocarbons (PAHs); Sphingomonas sp.

Indexed keywords

ATTENUATION; CRUDE PETROLEUM; GROUNDWATER; SOILS; STRAIN; SUBSTRATES;

BACTERIAL STRAIN; RING-FUSION ACTIVITY;

BIODEGRADATION;

CATECHOL; CATECHOL 2,3 DIOXYGENASE; DNA 16S; MITOMYCIN C; NAPHTHALENE; PETROLEUM; PHENANTHRENE DERIVATIVE; POLYCYCLIC AROMATIC HYDROCARBON DERIVATIVE; PROTOCATECHUIC ACID;

BIODEGRADATION; MICROORGANISM; OIL POLLUTION; PHENANTHRENE; SOIL POLLUTION;

ALCALIGENES FAECALIS; ARTICLE; BACTERIAL STRAIN; CHINA; CONTROLLED STUDY; DEGRADATION; DNA DETERMINATION; ESCHERICHIA COLI; NONHUMAN; NUCLEOTIDE SEQUENCE; SOIL; SPHINGOMONAS;

BASE SEQUENCE; BIODEGRADATION, ENVIRONMENTAL; DNA PRIMERS; DRUG RESISTANCE; ESCHERICHIA COLI; HYDROLYSIS; PLASMIDS; POLYCYCLIC COMPOUNDS; SPHINGOMONAS;

ALCALIGENES; ALCALIGENES FAECALIS; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA; NOCARDIOIDES; NOCARDIOIDES SP.; SPHINGOMONAS; SPHINGOMONAS SP.;

EID: 3242777038     PISSN: 09239820     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:BIOD.0000026579.38741.e1     Document Type: Article

References (29)

1. Bezalel L, Hadar Y, Fu PP, Freeman JP & Cerniglia CE (1996) Metabolism of phenanthrene by the White Rot Fungus Pleurotus ostreatus. Appl. Environ. Microbiol. 62: 2547-2553
2. Bradford MM (1976) A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72: 248-254
3. Cain RB (1966) Utilization of anthranilic and nitrobenzoic acids by Nocardia opaca & Flavobacterium. J. Gen. Microbiol. 42: 219-235
4. Chakrabarty AM (1972) Genetic basis of the biodegradation of salicylate in Pseudomonas. J. Bacteriol. 112: 815-823
5. Cho JC & Kim SJ (2001) Detection of mega plasmid from polycyclic aromatic hydrocarbon-degrading Sphingomonas sp. strain KS14. J. Mol. Microbiol. Biotechnol. 3: 503-506
6. Crawford RL, Hutton SW & Chapman PJ (1975) Purification and properties of gentisate 1,2-dioxygenase from Moraxella osloensis. J. Bacteriol. 121: 794-799
7. Dunn N & Gunsalus IC (1973) Transmissible plasmids coding early enzyme of naphthalene oxidation in Pseudomonas putida. J. Bacteriol. 114: 974-979
8. Fuenmayor SL, Wild M, Boyes AL & Williams PA (1998) A gene cluster encoding steps in conversion of naphthalene to gentisate in Pseudomonas sp. strain U2. J. Bacteriol. 180: 2522-2530
9. Grimm AC & Harwood CS (1999) NahY, a catabolic plasmid-encoded receptor required for chemotaxis of Pseudomonas putida to the aromatic. J. Bacteriol. 181: 3310-3316
10. Johnsen AR, Winding A, Karlson U & Roslev P (2002) Linking of microorganisms to phenanthrene metabolism in soil by analysis of (13)C-labeled cell lipids. Appl. Environ. Microbiol. 68: 6106-6113
11. Kado CI & Liu ST (1981) Rapid procedure for detection and isolation of large and small plasmids. J. Bacteriol. 145: 1365-1373
12. Kanaly RA & Harayama S (2000) Biodegradation of high-molecular-weight polycyclic aromatic hydrocarbons by bacteria. J. Bacteriol. 182: 2059-2067
13. Kang BS, Ha JY, Lim JC, Lee J, Kim CK, Min KR & Kim Y (1998) Structure of catechol 2,3-dioxygenase gene from Alcaligenes eutrophus 335. Biochem. Biophys. Res. Commun. 245: 791-796
14. Kastner M & Mahro B (1996) Microbial degradation of polycyclic aromatic hydrocarbons in soil affected by the organic matrix of compost. Appl. Microbiol. Biotechnol. 44: 668-675
15. Kiyohara H, Nagao K & Kouno K (1982a) Phenanthrene-degrading phenotype of Alcaligenes faecelis AFK2. Appl. Environ. Microbiol. 43: 458-461
16. Kiyohara H, Nagao K & Yano K (1982b) Rapid screening for bacteria degrading water-insoluble, solid hydrocarbons on agar plates. Appl. Environ. Microbiol. 43: 454-457
17. Kojima Y, Itada N & Hayaishi O (1961) Metapyrocatechase: a new catechol-cleaving enzyme. J. Biol. Chem. 236: 2223-2228
18. LaVoce EI, Hecht SS, Bedenko V & Hoffman D (1982) Identification of the mutagenic metabolites of fluorene, 2-methylfluorene, and 3-methyl-fluoranthene. Carcinogenesis 3: 841-846
19. Lotufo GR (1997) Toxicity of sediment-associated PAHs to an estuarine copepod: effects on survival, feeding, reproduction and behaviour. Mar. Environ. Res. 44: 149-166
20. Meyer S, Moser R, Neef A, Stahl U & Kampfer P (1999) Differential detection of key enzymes of polyaromatic hydrocarbon-degrading bacteria using PCR and gene probes. Microbiol. 145: 1731-1741
21. Romine MF, Stillwell LC, Wong KK, Thurston SJ, Sisk EC, Sensen C, Gaasterland T, Fredrickson JK & Saffer JD (1999) Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199. J. Bacteriol. 181: 1585-1602
22. Saito A, Iwabuchi T & Harayama S (2000) A novel phenanthrene dioxygenase from Nocardioides sp. strain KP7: expression in Escherichia coli. J. Bacteriol. 182: 2134-2141
23. Sambrook J, Fritsch EF & Maniatis T (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
24. Sanseverino J, Applegate BM, Henry King JM & Sayler GS (1993) Plasmid-mediated mineralization of naphthalene, phenanthrene, and anthracene. Appl. Environ. Microbiol. 59: 1931-1937
25. Stanier RY & Ingraham JL (1954) Protocatechuic acid oxidase. J. Biol. Chem. 210: 799-808
26. Takizawa N, Kaida N, Torigoe S, Moritani T, Sawada T, Satoh S & Kiyohara H (1994) Identification and characterization of genes encoding polycyclic aromatic hydrocarbon dioxygenase and polycyclic aromatic hydrocarbon dihydrodiol dehydrogenase in Pseudomonas putida OUS82. J. Bacteriol. 176: 2444-2449
27. Weisburg WG, Barns SM, Pelletier DA & Lane DJ (1991) 16s ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173: 697-703
28. Wheelis ML, Palleroni NJ & Stanier RY (1967) The metabolism of aromatic acids by Pseudomonas testeroni and P. acidivorans. Arch. Mikrobiol. 59: 302-314
29. Yrjala K, Suomalainen S & Suhonen EL (1998) Characterization and reclassification of an aromatic- and chloroaromatic-degrading Pseudomonas sp., strain HV3, as Sphingomonas sp. HV3. Int. J. Syst. Bacteriol. 48: 1057-1062