메뉴 건너뛰기




Volumn 64, Issue 2, 2004, Pages 154-174

Divergence of mobile genetic elements involved in the distribution of xenobiotic-catabolic capacity

Author keywords

[No Author keywords available]

Indexed keywords

CARBAZOLE DERIVATIVE; ENZYME; XENOBIOTIC AGENT;

EID: 2142659318     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-003-1509-y     Document Type: Short Survey
Times cited : (126)

References (183)
  • 1
    • 0022443952 scopus 로고
    • Comparative analysis of different Pseudomonas strains that degrade cinnamic acid
    • Andreoni V, Bestetti G (1986) Comparative analysis of different Pseudomonas strains that degrade cinnamic acid. Appl Environ Microbiol 52:930-934
    • (1986) Appl Environ Microbiol , vol.52 , pp. 930-934
    • Andreoni, V.1    Bestetti, G.2
  • 2
    • 0021170881 scopus 로고
    • Novel Pseudomonas plasmid involved in aniline degradation
    • Anson JG, Mackinnon G (1984) Novel Pseudomonas plasmid involved in aniline degradation. Appl Environ Microbiol 48:868-869
    • (1984) Appl Environ Microbiol , vol.48 , pp. 868-869
    • Anson, J.G.1    Mackinnon, G.2
  • 3
    • 0033972854 scopus 로고    scopus 로고
    • Genetic variation: Molecular mechanisms and impact on microbial evolution
    • Arber W (2000) Genetic variation: molecular mechanisms and impact on microbial evolution. FEMS Microbiol Rev 24:1-7
    • (2000) FEMS Microbiol Rev , vol.24 , pp. 1-7
    • Arber, W.1
  • 4
    • 0031859323 scopus 로고    scopus 로고
    • Genetic analysis of dioxin dioxygenase of Sphingomonas sp. strain RW1: Catabolic genes dispersed on the genome
    • Armengaud J, Happe B, Timmis KN (1998) Genetic analysis of dioxin dioxygenase of Sphingomonas sp. strain RW1: catabolic genes dispersed on the genome. J Bacteriol 180:3954-3966
    • (1998) J Bacteriol , vol.180 , pp. 3954-3966
    • Armengaud, J.1    Happe, B.2    Timmis, K.N.3
  • 5
    • 0024093037 scopus 로고
    • Comparison of the meta pathway operons on NAH plasmid pWW60-22 and TOL plasmid pWW53-4 and its evolutionary significance
    • Assinder SJ, Williams PA (1988) Comparison of the meta pathway operons on NAH plasmid pWW60-22 and TOL plasmid pWW53-4 and its evolutionary significance. J Gen Microbiol 134:2769-2778
    • (1988) J Gen Microbiol , vol.134 , pp. 2769-2778
    • Assinder, S.J.1    Williams, P.A.2
  • 6
    • 0034868291 scopus 로고    scopus 로고
    • Gene cluster on pAO1 of Arthrobacter nicotinovorans involved in degradation of the plant alkaloid nicotine: Cloning, purification, and characterization of 2,6-dihydroxvpvridine 3-hydroxylase
    • Baitsch D, Sandu C, Brandsch R, Igloi GL (2001) Gene cluster on pAO1 of Arthrobacter nicotinovorans involved in degradation of the plant alkaloid nicotine: cloning, purification, and characterization of 2,6-dihydroxvpvridine 3-hydroxylase. J Bacteriol 2001:5262-5267
    • (2001) J Bacteriol , vol.2001 , pp. 5262-5267
    • Baitsch, D.1    Sandu, C.2    Brandsch, R.3    Igloi, G.L.4
  • 7
    • 0025181604 scopus 로고
    • Location and organization of the dimethylphenol catabolic genes of Pseudomonas CF600
    • Bartilson M, Nordlund I, Shingler V (1990) Location and organization of the dimethylphenol catabolic genes of Pseudomonas CF600. Mol Gen Genet 220:294-300
    • (1990) Mol Gen Genet , vol.220 , pp. 294-300
    • Bartilson, M.1    Nordlund, I.2    Shingler, V.3
  • 8
    • 0032898962 scopus 로고    scopus 로고
    • Genetic and biochemical analyses of the tec operon suggest a route for evolution of chlorobenzene degradation genes
    • Beil S, Timmis KN, Pieper DH (1999) Genetic and biochemical analyses of the tec operon suggest a route for evolution of chlorobenzene degradation genes. J Bacteriol 181:341-346
    • (1999) J Bacteriol , vol.181 , pp. 341-346
    • Beil, S.1    Timmis, K.N.2    Pieper, D.H.3
  • 9
    • 0034969905 scopus 로고    scopus 로고
    • Analysis of Pseudomonas putida alkane-degradation gene clusters and flanking insertion sequences: Evolution and regulation of the alk genes
    • Beilen JB van, Panke S, Lucchini S, Franchini AG, Röthlisberger M, Witholt B (2001) Analysis of Pseudomonas putida alkane-degradation gene clusters and flanking insertion sequences: evolution and regulation of the alk genes. Microbiology 147:1621-1630
    • (2001) Microbiology , vol.147 , pp. 1621-1630
    • Van Beilen, J.B.1    Panke, S.2    Lucchini, S.3    Franchini, A.G.4    Röthlisberger, M.5    Witholt, B.6
  • 10
    • 0004224917 scopus 로고
    • American Society for Microbiology, Washington, D.C.
    • Berg DE, Howe MM (1989) Mobile DNA. American Society for Microbiology, Washington, D.C.
    • (1989) Mobile DNA
    • Berg, D.E.1    Howe, M.M.2
  • 11
    • 0345161811 scopus 로고    scopus 로고
    • Genetic characterization and evolutionary implications of a chromosomally encoded naphthalene-degradation upper pathway from Pseudomonas stutzeri AN10
    • Bosch R, García-Valdés E, Moore ERB (1999a) Genetic characterization and evolutionary implications of a chromosomally encoded naphthalene-degradation upper pathway from Pseudomonas stutzeri AN10. Gene 236:149-157
    • (1999) Gene , vol.236 , pp. 149-157
    • Bosch, R.1    García-Valdés, E.2    Moore, E.R.B.3
  • 12
    • 0032960144 scopus 로고    scopus 로고
    • NahW, a novel, inducible salicylate hydroxylase involved in mineralization of naphthalene by Pseudomonas stutzeri AN10
    • Bosch R, Moore ERB, García-Valdés E, Pieper DH (1999b) NahW, a novel, inducible salicylate hydroxylase involved in mineralization of naphthalene by Pseudomonas stutzeri AN10. J Bacteriol 181:2315-2322
    • (1999) J Bacteriol , vol.181 , pp. 2315-2322
    • Bosch, R.1    Moore, E.R.B.2    García-Valdés, E.3    Pieper, D.H.4
  • 13
    • 0343485080 scopus 로고    scopus 로고
    • Complete nucleotide sequence and evolutionary significance of a chromosomally encoded naphthalene-degradation lower pathway from Pseudomonas stutzeri AN10
    • Bosch R, García-Valdés E, Moore ERB (2000) Complete nucleotide sequence and evolutionary significance of a chromosomally encoded naphthalene-degradation lower pathway from Pseudomonas stutzeri AN10. Gene 245:65-74
    • (2000) Gene , vol.245 , pp. 65-74
    • Bosch, R.1    García-Valdés, E.2    Moore, E.R.B.3
  • 14
    • 0025666463 scopus 로고
    • Comparative genetic organization of incompatibility group P degradative plasmids
    • Burlage RS, Bemis LA, Layton AC, Sayler GS, Larimer F (1990) Comparative genetic organization of incompatibility group P degradative plasmids. J Bacteriol 172:6818-6825
    • (1990) J Bacteriol , vol.172 , pp. 6818-6825
    • Burlage, R.S.1    Bemis, L.A.2    Layton, A.C.3    Sayler, G.S.4    Larimer, F.5
  • 16
    • 0015424751 scopus 로고
    • Genetic basis of the biodegradation of salicylate in Pseudomonas
    • Chakrabarty AM (1972) Genetic basis of the biodegradation of salicylate in Pseudomonas. J Bacteriol 112:815-823
    • (1972) J Bacteriol , vol.112 , pp. 815-823
    • Chakrabarty, A.M.1
  • 17
    • 0015634348 scopus 로고
    • Genetic fusion of incompatible plasmids in Pseudomonas
    • Chakrabarty AM (1973) Genetic fusion of incompatible plasmids in Pseudomonas. Proc Natl Acad Sci USA 70:1641-1644
    • (1973) Proc Natl Acad Sci USA , vol.70 , pp. 1641-1644
    • Chakrabarty, A.M.1
  • 18
    • 0018139857 scopus 로고
    • Transposition of plasmid DNA segments specifying hydrocarbon degradation and their expression in various microorganisms
    • Chakrabarty AM, Friello DA, Bopp LH (1978) Transposition of plasmid DNA segments specifying hydrocarbon degradation and their expression in various microorganisms. Proc Natl Acad Sci USA 75:3109-3112
    • (1978) Proc Natl Acad Sci USA , vol.75 , pp. 3109-3112
    • Chakrabarty, A.M.1    Friello, D.A.2    Bopp, L.H.3
  • 19
    • 0020350988 scopus 로고
    • Genetic rearrangements in plasmids specifying total degradation of chlorinated benzoic acids
    • Chatterjee DK, Chakrabarty AM (1982) Genetic rearrangements in plasmids specifying total degradation of chlorinated benzoic acids. Mol Gen Genet 188:279-285
    • (1982) Mol Gen Genet , vol.188 , pp. 279-285
    • Chatterjee, D.K.1    Chakrabarty, A.M.2
  • 20
    • 0021246784 scopus 로고
    • Restriction mapping of a chlorobenzoate degradative plasmid and molecular cloning of the degradative genes
    • Chatterjee DK, Chakrabarty AM (1984) Restriction mapping of a chlorobenzoate degradative plasmid and molecular cloning of the degradative genes. Gene 27:173-181
    • (1984) Gene , vol.27 , pp. 173-181
    • Chatterjee, D.K.1    Chakrabarty, A.M.2
  • 21
    • 0019481141 scopus 로고
    • Plasmid specifying total degradation of 3-chlorobenzoate by a modified ortho pathway
    • Chatterjee DK, Kellogg ST, Hamada S, Chakrabarty AM (1981) Plasmid specifying total degradation of 3-chlorobenzoate by a modified ortho pathway. J Bacteriol 146:639-646
    • (1981) J Bacteriol , vol.146 , pp. 639-646
    • Chatterjee, D.K.1    Kellogg, S.T.2    Hamada, S.3    Chakrabarty, A.M.4
  • 22
    • 85158017778 scopus 로고    scopus 로고
    • Conjugative transposons and related mobile elements
    • Craig NL, Craigie R, Gellert M, Lambowitz AM (eds) American Society for Microbiology, Washington, D.C.
    • Churchward G (2002) Conjugative transposons and related mobile elements. In: Craig NL, Craigie R, Gellert M, Lambowitz AM (eds) Mobile DNA II. American Society for Microbiology, Washington, D.C., pp 177-191
    • (2002) Mobile DNA II , pp. 177-191
    • Churchward, G.1
  • 23
    • 0034872583 scopus 로고    scopus 로고
    • Molecular characterization of a deletion/duplication rearrangement in tfd genes from Ralstonia eutropha JMP134(pJP4) that improves growth on 3-chlorobenzoic acid but abolishes growth on 2,4-dichlorophenoxyacetic acid
    • Clément P, Pieper DH, González B (2001) Molecular characterization of a deletion/duplication rearrangement in tfd genes from Ralstonia eutropha JMP134(pJP4) that improves growth on 3-chlorobenzoic acid but abolishes growth on 2,4-dichlorophenoxyacetic acid. Microbiology 147:2141-2148
    • (2001) Microbiology , vol.147 , pp. 2141-2148
    • Clément, P.1    Pieper, D.H.2    González, B.3
  • 24
    • 0028226687 scopus 로고
    • Identification and characterization of a transmissible linear plasmid from Rhodococcus erythropolis BD2 that encodes isopropylbenzene and trichloroethene catabolism
    • Dabrock B, Keßeler M, Averhoff B, Gottschalk G (1994) Identification and characterization of a transmissible linear plasmid from Rhodococcus erythropolis BD2 that encodes isopropylbenzene and trichloroethene catabolism. Appl Environ Microbiol 60:853-860
    • (1994) Appl Environ Microbiol , vol.60 , pp. 853-860
    • Dabrock, B.1    Keßeler, M.2    Averhoff, B.3    Gottschalk, G.4
  • 25
    • 0028860121 scopus 로고
    • Cloning, nucleotide sequence, and expression of the gene encoding a novel dioxygenase involved in metabolism of carboxydiphenyl ethers in Pseudomonas pseudoalcaligenes POB310
    • Dehmel U, Engesser KH, Timmis KN, Dwyer DF (1995) Cloning, nucleotide sequence, and expression of the gene encoding a novel dioxygenase involved in metabolism of carboxydiphenyl ethers in Pseudomonas pseudoalcaligenes POB310. Arch Microbiol 163:35-41
    • (1995) Arch Microbiol , vol.163 , pp. 35-41
    • Dehmel, U.1    Engesser, K.H.2    Timmis, K.N.3    Dwyer, D.F.4
  • 26
    • 0019511050 scopus 로고
    • Properties of six pesticide degradation plasmids isolated from Alcaligenes paradoxus and Alcaligenes eutrophus
    • Don RH, Pemberton JM (1981) Properties of six pesticide degradation plasmids isolated from Alcaligenes paradoxus and Alcaligenes eutrophus. J Bacteriol 145:681-686
    • (1981) J Bacteriol , vol.145 , pp. 681-686
    • Don, R.H.1    Pemberton, J.M.2
  • 27
    • 0022003968 scopus 로고
    • Transposon mutagenesis and cloning analysis of the pathways for degradation of 2,4-dicholorophenoxyacetic acid and 3-chlorobenzoate in Alcaligenes eutrophus JMP134(pJP4)
    • Don RH, Weightman AJ, Knackmuss HJ, Timmis KN (1985) Transposon mutagenesis and cloning analysis of the pathways for degradation of 2,4-dicholorophenoxyacetic acid and 3-chlorobenzoate in Alcaligenes eutrophus JMP134(pJP4). J Bacteriol 161:85-90
    • (1985) J Bacteriol , vol.161 , pp. 85-90
    • Don, R.H.1    Weightman, A.J.2    Knackmuss, H.J.3    Timmis, K.N.4
  • 28
    • 0016156623 scopus 로고
    • Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad
    • Dom E, Hellwig M, Reineke W, Knackmuss HJ (1974) Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad. Arch Microbiol 99:61-70
    • (1974) Arch Microbiol , vol.99 , pp. 61-70
    • Dom, E.1    Hellwig, M.2    Reineke, W.3    Knackmuss, H.J.4
  • 29
    • 0015781618 scopus 로고
    • Transmissible plasmid coding early enzymes of naphthalene oxidation in Pseudomonas putida
    • Dunn NW, Gunsalus IC (1973) Transmissible plasmid coding early enzymes of naphthalene oxidation in Pseudomonas putida. J Bacteriol 114:974-979
    • (1973) J Bacteriol , vol.114 , pp. 974-979
    • Dunn, N.W.1    Gunsalus, I.C.2
  • 30
    • 0029095076 scopus 로고
    • Comamonas acidovorans UCC61 catabolizes o-phthalate via a 4,5-oxygenation pathway that is encoded on a 70 kbp section of plasmid pOPH1 bounded by directly repeated sequences
    • Dutton JR, Venables WA, Saint CP (1995) Comamonas acidovorans UCC61 catabolizes o-phthalate via a 4,5-oxygenation pathway that is encoded on a 70 kbp section of plasmid pOPH1 bounded by directly repeated sequences. Microbiology 141:1673-1682
    • (1995) Microbiology , vol.141 , pp. 1673-1682
    • Dutton, J.R.1    Venables, W.A.2    Saint, C.P.3
  • 31
    • 0034991776 scopus 로고    scopus 로고
    • Plasmid-encoded phthalate catabolic pathway in Arthrobacter keyseri 12B
    • Eaton RW (2001) Plasmid-encoded phthalate catabolic pathway in Arthrobacter keyseri 12B. J Bacteriol 183:3689-3703
    • (2001) J Bacteriol , vol.183 , pp. 3689-3703
    • Eaton, R.W.1
  • 32
    • 0022520181 scopus 로고
    • Characterization of a plasmid-specified pathway for catabolism of isopropylbenzene in Pseudomonas putida RE204
    • Eaton RW, Timmis KN (1986) Characterization of a plasmid-specified pathway for catabolism of isopropylbenzene in Pseudomonas putida RE204. J Bacteriol 168:123-131
    • (1986) J Bacteriol , vol.168 , pp. 123-131
    • Eaton, R.W.1    Timmis, K.N.2
  • 33
    • 0031761306 scopus 로고    scopus 로고
    • Isopropylbenzene catabolic pathway in Pseudomonas putida RE204: Nucleotide sequence analysis of the ipb operon and neighboring DNA from pRE4
    • Eaton RW, Selifonova OV, Gedney RM (1998) Isopropylbenzene catabolic pathway in Pseudomonas putida RE204: nucleotide sequence analysis of the ipb operon and neighboring DNA from pRE4. Biodegradation 9:119-132
    • (1998) Biodegradation , vol.9 , pp. 119-132
    • Eaton, R.W.1    Selifonova, O.V.2    Gedney, R.M.3
  • 34
    • 0030897550 scopus 로고    scopus 로고
    • Plasmid-mediated mineralization of carbofuran by Sphingomonas sp. strain CF06
    • Feng XH, Ou LT, Ogram A (1997) Plasmid-mediated mineralization of carbofuran by Sphingomonas sp. strain CF06. Appl Environ Microbiol 63:1332-1337
    • (1997) Appl Environ Microbiol , vol.63 , pp. 1332-1337
    • Feng, X.H.1    Ou, L.T.2    Ogram, A.3
  • 35
    • 0025169353 scopus 로고
    • Expression of dibenzothiophene-degradative genes in two Pseudomonas species
    • Foght JM, Westlake DWS (1990) Expression of dibenzothiophene-degradative genes in two Pseudomonas species. Can J Microbiol 36:718-724
    • (1990) Can J Microbiol , vol.36 , pp. 718-724
    • Foght, J.M.1    Westlake, D.W.S.2
  • 36
    • 0034052594 scopus 로고    scopus 로고
    • The genes for benzene catabolism in Pseudomonas putida ML2 are flanked by two copies of the insertion element IS1489, forming a class-I-type catabolic transposon, Tn5542
    • Fong KPY, Goh CBH, Tan HM (2000) The genes for benzene catabolism in Pseudomonas putida ML2 are flanked by two copies of the insertion element IS1489, forming a class-I-type catabolic transposon, Tn5542. Plasmid 43:103-110
    • (2000) Plasmid , vol.43 , pp. 103-110
    • Fong, K.P.Y.1    Goh, C.B.H.2    Tan, H.M.3
  • 37
    • 0023374169 scopus 로고
    • Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradation
    • Frantz B, Chakrabarty AM (1987) Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradation. Proc Natl Acad Sci USA 84:4460-4464
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 4460-4464
    • Frantz, B.1    Chakrabarty, A.M.2
  • 38
    • 0025847131 scopus 로고
    • Isolation and characterization of a subsurface bacterium capable of growth on toluene, naphthalene, and other aromatic compounds
    • Fredrickson JK, Brockman FJ, Workman DJ, Li SW, Stevens TO (1991) Isolation and characterization of a subsurface bacterium capable of growth on toluene, naphthalene, and other aromatic compounds. Appl Environ Microbiol 57:796-803
    • (1991) Appl Environ Microbiol , vol.57 , pp. 796-803
    • Fredrickson, J.K.1    Brockman, F.J.2    Workman, D.J.3    Li, S.W.4    Stevens, T.O.5
  • 39
    • 0031025515 scopus 로고    scopus 로고
    • Plasmid-encoded genes specifying aniline oxidation from Acinetobacter sp. strain YAA
    • Fujii T, Takeo M, Maeda Y (1997) Plasmid-encoded genes specifying aniline oxidation from Acinetobacter sp. strain YAA. Microbiology 143:93-99
    • (1997) Microbiology , vol.143 , pp. 93-99
    • Fujii, T.1    Takeo, M.2    Maeda, Y.3
  • 40
    • 0031036516 scopus 로고    scopus 로고
    • Nucleotide sequences and regulational analysis of genes involved in conversion of aniline to catechol in Pseudomonas putida UCC22(pTDN1)
    • Fukumori F, Saint CP (1997) Nucleotide sequences and regulational analysis of genes involved in conversion of aniline to catechol in Pseudomonas putida UCC22(pTDN1). J Bacteriol 179:399-408
    • (1997) J Bacteriol , vol.179 , pp. 399-408
    • Fukumori, F.1    Saint, C.P.2
  • 41
    • 0025731853 scopus 로고
    • Transfer and expression of the catabolic plasmid pBRC60 in wild bacterial recipients in a freshwater ecosystem
    • Fulthorpe RR, Wyndham RC (1991) Transfer and expression of the catabolic plasmid pBRC60 in wild bacterial recipients in a freshwater ecosystem. Appl Environ Microbiol 57:1546-1553
    • (1991) Appl Environ Microbiol , vol.57 , pp. 1546-1553
    • Fulthorpe, R.R.1    Wyndham, R.C.2
  • 42
    • 0036718559 scopus 로고    scopus 로고
    • Site-specific recombination system encoded by toluene catabolic transposon Tn4651
    • Genka H, Nagata Y, Tsuda M (2002) Site-specific recombination system encoded by toluene catabolic transposon Tn4651. J Bacteriol 184:4757-4766
    • (2002) J Bacteriol , vol.184 , pp. 4757-4766
    • Genka, H.1    Nagata, Y.2    Tsuda, M.3
  • 43
    • 0023928662 scopus 로고
    • Nucleotide homology and organization of chlorocatechol oxidation genes of plasmids pJP4 and pAC27
    • Ghosal D, You IS (1988) Nucleotide homology and organization of chlorocatechol oxidation genes of plasmids pJP4 and pAC27. Mol Gen Genet 211:113-120
    • (1988) Mol Gen Genet , vol.211 , pp. 113-120
    • Ghosal, D.1    You, I.S.2
  • 44
  • 45
    • 0031832295 scopus 로고    scopus 로고
    • Structures of homologous composite transposons carrying cbaABC genes from Europe and North America
    • Gioia DD, Peel M, Fava F, Wyndham RC (1998) Structures of homologous composite transposons carrying cbaABC genes from Europe and North America. Appl Environ Microbiol 64:1940-1946
    • (1998) Appl Environ Microbiol , vol.64 , pp. 1940-1946
    • Gioia, D.D.1    Peel, M.2    Fava, F.3    Wyndham, R.C.4
  • 46
  • 47
    • 85158006363 scopus 로고    scopus 로고
    • The movement of Tn3-like elements: Transposition and cointegrate resolution
    • Craig NL, Craigie R, Gellert M, Lambowitz AM (eds) American Society for Microbiology, Washington, D.C.
    • Grindley NDF (2002) The movement of Tn3-like elements: transposition and cointegrate resolution. In: Craig NL, Craigie R, Gellert M, Lambowitz AM (eds) Mobile DNA II. American Society for Microbiology, Washington, D.C., pp 272-302
    • (2002) Mobile DNA II , pp. 272-302
    • Grindley, N.D.F.1
  • 48
    • 0021781318 scopus 로고
    • Transpositional recombination in prokaryotes
    • Grindley NDF, Reed PR (1985) Transpositional recombination in prokaryotes. Annu Rev Biochem 54:863-896
    • (1985) Annu Rev Biochem , vol.54 , pp. 863-896
    • Grindley, N.D.F.1    Reed, P.R.2
  • 49
    • 0025651190 scopus 로고
    • The Tn21 subgroup of bacterial transposable elements
    • Grinsted J, Cruz F de la, Schmitt R (1990) The Tn21 subgroup of bacterial transposable elements. Plasmid 24:163-189
    • (1990) Plasmid , vol.24 , pp. 163-189
    • Grinsted, J.1    De La Cruz, F.2    Schmitt, R.3
  • 50
    • 0037150032 scopus 로고    scopus 로고
    • Sphingomonas sp. strain KA1, carrying a carbazole dioxygenase gene homologue, degrades chlorinated dibenzo-p-dioxins in soil
    • Habe H, Ashikawa Y, Saiki Y, Yoshida T, Nojiri H, Omori T (2002) Sphingomonas sp. strain KA1, carrying a carbazole dioxygenase gene homologue, degrades chlorinated dibenzo-p-dioxins in soil. FEMS Microbiol Lett 211:43-49
    • (2002) FEMS Microbiol Lett , vol.211 , pp. 43-49
    • Habe, H.1    Ashikawa, Y.2    Saiki, Y.3    Yoshida, T.4    Nojiri, H.5    Omori, T.6
  • 52
    • 0034980876 scopus 로고    scopus 로고
    • Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbes
    • Hacker J, Carniel E (2001) Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbes. EMBO Rep 2:376-381
    • (2001) EMBO Rep , vol.2 , pp. 376-381
    • Hacker, J.1    Carniel, E.2
  • 53
    • 0028215621 scopus 로고
    • Codon usage patterns suggest independent evolution of two catabolic operons on toluene-degradative plasmid TOL pWW0 of Pseudomonas putida
    • Harayama S (1994) Codon usage patterns suggest independent evolution of two catabolic operons on toluene-degradative plasmid TOL pWW0 of Pseudomonas putida. J Mol Evol 38:328-335
    • (1994) J Mol Evol , vol.38 , pp. 328-335
    • Harayama, S.1
  • 54
    • 0030977550 scopus 로고    scopus 로고
    • Natural horizontal transfer of a naphthalene dioxygenase gene between bacterial native to a coal tar-contaminated field site
    • Herrick JB, Stuart-Keil KG, Ghiorse WC, Madsen EL (1997) Natural horizontal transfer of a naphthalene dioxygenase gene between bacterial native to a coal tar-contaminated field site. Appl Environ Microbiol 63:2330-2337
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2330-2337
    • Herrick, J.B.1    Stuart-Keil, K.G.2    Ghiorse, W.C.3    Madsen, E.L.4
  • 55
    • 0023260467 scopus 로고
    • Involvement of the plasmid pPGH1 in the phenol degradation of Pseudomonas putida strain H
    • Herrmann H, Janke D, Krejsa S, Kunze I (1987) Involvement of the plasmid pPGH1 in the phenol degradation of Pseudomonas putida strain H. FEMS Microbiol Lett 43:133-137
    • (1987) FEMS Microbiol Lett , vol.43 , pp. 133-137
    • Herrmann, H.1    Janke, D.2    Krejsa, S.3    Kunze, I.4
  • 56
    • 0018942997 scopus 로고
    • Regulation of enzymes of the 3,5-xylenol-degradative pathway in Pseudomonas putida: Evidence for a plasmid
    • Hopper DJ, Kemp PD (1980) Regulation of enzymes of the 3,5-xylenol-degradative pathway in Pseudomonas putida: evidence for a plasmid. J Bacteriol 142:21-26
    • (1980) J Bacteriol , vol.142 , pp. 21-26
    • Hopper, D.J.1    Kemp, P.D.2
  • 57
    • 0032464363 scopus 로고    scopus 로고
    • Expression of the transposase gene tnpA of Tn4652 is positively affected by integration host factor
    • Hõrak R, Kivisaar M (1998) Expression of the transposase gene tnpA of Tn4652 is positively affected by integration host factor. J Bacteriol 180:2822-2829
    • (1998) J Bacteriol , vol.180 , pp. 2822-2829
    • Hõrak, R.1    Kivisaar, M.2
  • 58
    • 0037334848 scopus 로고    scopus 로고
    • Sequence of the 165-kilobase catabolic plasmid pAO1 from Arthrobacter nicotinovorans and identification of a pAO1-dependent nicotine uptake system
    • Igloi GL, Brandsch R (2003) Sequence of the 165-kilobase catabolic plasmid pAO1 from Arthrobacter nicotinovorans and identification of a pAO1-dependent nicotine uptake system. J Bacteriol 185:1976-1986
    • (2003) J Bacteriol , vol.185 , pp. 1976-1986
    • Igloi, G.L.1    Brandsch, R.2
  • 59
    • 0036324296 scopus 로고    scopus 로고
    • Plasmid-borne genes code for an angular dioxygenase involved in dibenzofurans degradation by Terrabacter sp. strain YK3
    • Iida T, Mukouzaka Y, Nakamura K, Kudo T (2002a) Plasmid-borne genes code for an angular dioxygenase involved in dibenzofurans degradation by Terrabacter sp. strain YK3. Appl Environ Microbiol 68:3716-3723
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3716-3723
    • Iida, T.1    Mukouzaka, Y.2    Nakamura, K.3    Kudo, T.4
  • 60
    • 0036654304 scopus 로고    scopus 로고
    • Isolation and characterization of dibenzofuran-degrading actinomycetes: Analysis of multiple extradiol dioxygenase genes in dibenzofuran-degrading Rhodococcus species
    • Iida T, Mukozaka Y, Nakamura K, Yamaguchi I, Kudo T (2002b) Isolation and characterization of dibenzofuran-degrading actinomycetes: analysis of multiple extradiol dioxygenase genes in dibenzofuran-degrading Rhodococcus species. Biosci Biotechnol Biochem 66:1462-1472
    • (2002) Biosci Biotechnol Biochem , vol.66 , pp. 1462-1472
    • Iida, T.1    Mukozaka, Y.2    Nakamura, K.3    Yamaguchi, I.4    Kudo, T.5
  • 61
    • 0034868292 scopus 로고    scopus 로고
    • s in starvation-induced transposition of Pseudomonas putida transposon Tn4652
    • s in starvation-induced transposition of Pseudomonas putida transposon Tn4652. J Bacteriol 183:5445-5448
    • (2001) J Bacteriol , vol.183 , pp. 5445-5448
    • Ilves, H.1    Hõrak, R.2    Kivisaar, M.3
  • 62
    • 0025187238 scopus 로고
    • Mineralization of orthanilic acid is a plasmid-associated trait in Alcaligenes sp. O-1
    • Jahnke M, El-Banna T, Klintworth R, Auling G (1990) Mineralization of orthanilic acid is a plasmid-associated trait in Alcaligenes sp. O-1. J Gen Microbiol 136:2241-2249
    • (1990) J Gen Microbiol , vol.136 , pp. 2241-2249
    • Jahnke, M.1    El-Banna, T.2    Klintworth, R.3    Auling, G.4
  • 63
    • 0030945608 scopus 로고    scopus 로고
    • Conjugative plasmids and the degradation of arylsulfonates in Comamonas testosteroni
    • Junker F, Cook AM (1997) Conjugative plasmids and the degradation of arylsulfonates in Comamonas testosteroni. Appl Environ Microbiol 63:2403-2410
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2403-2410
    • Junker, F.1    Cook, A.M.2
  • 64
    • 0028016273 scopus 로고
    • Integration and excision of a 2,4-dichlorophenoxyacetic acid-degradative plasmid in Alcaligenes paradoxus and evidence of its natural intergeneric transfer
    • Ka JO, Tiedje JM (1994) Integration and excision of a 2,4-dichlorophenoxyacetic acid-degradative plasmid in Alcaligenes paradoxus and evidence of its natural intergeneric transfer. J Bacteriol 176:5284-5289
    • (1994) J Bacteriol , vol.176 , pp. 5284-5289
    • Ka, J.O.1    Tiedje, J.M.2
  • 65
    • 0031284266 scopus 로고    scopus 로고
    • Cloning and characterization of the genes involved in the degradation of dibenzofuran by Terrabacter sp. strain DBF63
    • Kasuga K, Nojiri H, Yamane H, Kodama T, Omori T (1997) Cloning and characterization of the genes involved in the degradation of dibenzofuran by Terrabacter sp. strain DBF63. J Ferment Bioeng 84:387-399
    • (1997) J Ferment Bioeng , vol.84 , pp. 387-399
    • Kasuga, K.1    Nojiri, H.2    Yamane, H.3    Kodama, T.4    Omori, T.5
  • 66
    • 0034799210 scopus 로고    scopus 로고
    • Isolation and characterization of the genes encoding a novel oxygenase component of angular dioxygenase from the Gram-positive dibenzofuran-degrader Terrabacter sp. strain DBF63
    • Kasuga K, Habe H, Chung JS, Yoshida T, Nojiri H, Yamane H, Omori T (2001) Isolation and characterization of the genes encoding a novel oxygenase component of angular dioxygenase from the Gram-positive dibenzofuran-degrader Terrabacter sp. strain DBF63. Biochem Biophys Res Commun 283:195-204
    • (2001) Biochem Biophys Res Commun , vol.283 , pp. 195-204
    • Kasuga, K.1    Habe, H.2    Chung, J.S.3    Yoshida, T.4    Nojiri, H.5    Yamane, H.6    Omori, T.7
  • 67
    • 0028029010 scopus 로고
    • Insertion sequence IS6100 on plasmid pOAD2, which degrades Nylon oligomers
    • Kato K, Ohtsuki K, Mitsuda H, Yomo T, Negoro S, Urabe I (1994) Insertion sequence IS6100 on plasmid pOAD2, which degrades Nylon oligomers. J Bacteriol 176:1197-1200
    • (1994) J Bacteriol , vol.176 , pp. 1197-1200
    • Kato, K.1    Ohtsuki, K.2    Mitsuda, H.3    Yomo, T.4    Negoro, S.5    Urabe, I.6
  • 68
    • 85004654535 scopus 로고
    • Isolation and characterization of plasmid pUO1 mediating dehalogenation of haloacetate and mercury resistance in Moraxella sp. B
    • Kawasaki H, Yahara H, Tonomura K (1981) Isolation and characterization of plasmid pUO1 mediating dehalogenation of haloacetate and mercury resistance in Moraxella sp. B. Agric Biol Chem 45:1477-1481
    • (1981) Agric Biol Chem , vol.45 , pp. 1477-1481
    • Kawasaki, H.1    Yahara, H.2    Tonomura, K.3
  • 69
    • 0022375254 scopus 로고
    • Evolutionary conservation of genes coding for meta pathway enzymes within TOL plasmids pWW0 and pWW53
    • Keil H, Keil S, Pickup RW, Williams PA (1985) Evolutionary conservation of genes coding for meta pathway enzymes within TOL plasmids pWW0 and pWW53. J Bacteriol 164:887-895
    • (1985) J Bacteriol , vol.164 , pp. 887-895
    • Keil, H.1    Keil, S.2    Pickup, R.W.3    Williams, P.A.4
  • 70
    • 0021814122 scopus 로고
    • Stability of a catabolic plasmid in continuous culture
    • Keshavarz T, Lilly MD, Clarke PH (1985) Stability of a catabolic plasmid in continuous culture. J Gen Microbiol 131:1193-1203
    • (1985) J Gen Microbiol , vol.131 , pp. 1193-1203
    • Keshavarz, T.1    Lilly, M.D.2    Clarke, P.H.3
  • 71
    • 0029946484 scopus 로고    scopus 로고
    • Studies on the isopropylbenzene 2,3-dioxygenase and the 3-isopropylcatechol 2,3-dioxygenase genes encoded by the linear plasmid of Rhodococcus erythropolis BD2
    • Kesseler M, Dabbs, ER, Averhoff B, Gottshalk G (1996) Studies on the isopropylbenzene 2,3-dioxygenase and the 3-isopropylcatechol 2,3-dioxygenase genes encoded by the linear plasmid of Rhodococcus erythropolis BD2. Microbiology 142:3241-3251
    • (1996) Microbiology , vol.142 , pp. 3241-3251
    • Kesseler, M.1    Dabbs, E.R.2    Averhoff, B.3    Gottshalk, G.4
  • 73
    • 0036855373 scopus 로고    scopus 로고
    • Tn5041-like transposons: Molecular diversity, evolutionary relationships and distribution of distinct variants in environmental bacteria
    • Kholodii G, Gorlenko Zh, Mindlin S, Hobman J, Nikiforov V (2002) Tn5041-like transposons: molecular diversity, evolutionary relationships and distribution of distinct variants in environmental bacteria. Microbiology 148:3569-3582
    • (2002) Microbiology , vol.148 , pp. 3569-3582
    • Kholodii, G.1    Gorlenko, Zh.2    Mindlin, S.3    Hobman, J.4    Nikiforov, V.5
  • 74
    • 0036400672 scopus 로고    scopus 로고
    • Isolation and characterization of Sphingomonas sp. GTIN11 capable of carbazole metabolism in petroleum
    • Kilbane II JJ, Daram A, Abbasian J, Kayser KJ (2002) Isolation and characterization of Sphingomonas sp. GTIN11 capable of carbazole metabolism in petroleum. Biochem Biophys Res Commun 297:242-248
    • (2002) Biochem Biophys Res Commun , vol.297 , pp. 242-248
    • Kilbane II, J.J.1    Daram, A.2    Abbasian, J.3    Kayser, K.J.4
  • 75
    • 0025028809 scopus 로고
    • Selection of independent plasmids determining phenol degradation in Pseudomonas putida and the cloning and expression of genes encoding phenol monooxygenase and catechol 1,2-dioxygenase
    • Kivisaar M, Hõrak R, Kasak L, Heinaru A, Habicht J (1990) Selection of independent plasmids determining phenol degradation in Pseudomonas putida and the cloning and expression of genes encoding phenol monooxygenase and catechol 1,2-dioxygenase. Plasmid 24:25-36
    • (1990) Plasmid , vol.24 , pp. 25-36
    • Kivisaar, M.1    Hõrak, R.2    Kasak, L.3    Heinaru, A.4    Habicht, J.5
  • 76
    • 0025979874 scopus 로고
    • Sequence of the plasmid-encoded catechol 1,2-dioxygenase-expressing gene, pheB, of phenol-degrading Pseudomonas sp. strain EST1001
    • Kivisaar M, Kasak L, Nurk A (1991) Sequence of the plasmid-encoded catechol 1,2-dioxygenase-expressing gene, pheB, of phenol-degrading Pseudomonas sp. strain EST1001. Gene 98:15-20
    • (1991) Gene , vol.98 , pp. 15-20
    • Kivisaar, M.1    Kasak, L.2    Nurk, A.3
  • 77
    • 0030803913 scopus 로고    scopus 로고
    • Three of the seven bphC genes of Rhodococcus erythropolis TA421, isolated from a termite ecosystem, are located on an indigenous plasmid associated with biphenyl degradation
    • Kosono S, Maeda M, Fuji F, Arai H, Kudo T (1997) Three of the seven bphC genes of Rhodococcus erythropolis TA421, isolated from a termite ecosystem, are located on an indigenous plasmid associated with biphenyl degradation. Appl Environ Microbiol 63:3282-3285
    • (1997) Appl Environ Microbiol , vol.63 , pp. 3282-3285
    • Kosono, S.1    Maeda, M.2    Fuji, F.3    Arai, H.4    Kudo, T.5
  • 78
    • 0029074374 scopus 로고
    • Plasmid pRTL1 controlling 1-chloroalkane degradation by Rhodococcus rhodochrous NCIMB13064
    • Kulakova AN, Stafford TM, Larkin MJ, Kulakov LA (1995) Plasmid pRTL1 controlling 1-chloroalkane degradation by Rhodococcus rhodochrous NCIMB13064. Plasmid 33:208-217
    • (1995) Plasmid , vol.33 , pp. 208-217
    • Kulakova, A.N.1    Stafford, T.M.2    Larkin, M.J.3    Kulakov, L.A.4
  • 79
    • 0031026361 scopus 로고    scopus 로고
    • The plasmid-located haloalkane dehalogenase gene from Rhodococcus rhodochrous NCIMB 13064
    • Kulakova AN, Larkin MJ, Kulakov LA (1997) The plasmid-located haloalkane dehalogenase gene from Rhodococcus rhodochrous NCIMB 13064. Microbiology 143:109-115
    • (1997) Microbiology , vol.143 , pp. 109-115
    • Kulakova, A.N.1    Larkin, M.J.2    Kulakov, L.A.3
  • 80
    • 0019506775 scopus 로고
    • Isolation and characterization of spontaneously occurring TOL plasmid mutants of Pseudomonas putida HS1
    • Kunz DA, Chapman PJ (1981) Isolation and characterization of spontaneously occurring TOL plasmid mutants of Pseudomonas putida HS1. J Bacteriol 146:952-964
    • (1981) J Bacteriol , vol.146 , pp. 952-964
    • Kunz, D.A.1    Chapman, P.J.2
  • 81
    • 0036145420 scopus 로고    scopus 로고
    • Reconciling the many faces of lateral gene transfer
    • Lawrence JG, Ochman H (2002) Reconciling the many faces of lateral gene transfer. Trends Microbiol 10:1-4
    • (2002) Trends Microbiol , vol.10 , pp. 1-4
    • Lawrence, J.G.1    Ochman, H.2
  • 83
    • 0021086625 scopus 로고
    • Molecular relationships between Pseudomonas Inc P-9 degradative plasmids TOL, NAH, and SAL
    • Lehrbach PR, McGregor I, Ward JM, Broda P (1983) Molecular relationships between Pseudomonas Inc P-9 degradative plasmids TOL, NAH, and SAL. Plasmid 10:164-174
    • (1983) Plasmid , vol.10 , pp. 164-174
    • Lehrbach, P.R.1    McGregor, I.2    Ward, J.M.3    Broda, P.4
  • 84
    • 0021017923 scopus 로고
    • Microorganisms and xenobiotic compounds
    • Leisinger T (1983) Microorganisms and xenobiotic compounds. Experientia 39:1183-1220
    • (1983) Experientia , vol.39 , pp. 1183-1220
    • Leisinger, T.1
  • 85
    • 0028055189 scopus 로고
    • Recombination of the bph (biphenyl) catabolic genes from plasmid pWW100 and their deletion during growth on benzoate
    • Lloyd-Jones G, Jong C de, Ogden RC, Duetz WA, Williams PA (1994) Recombination of the bph (biphenyl) catabolic genes from plasmid pWW100 and their deletion during growth on benzoate. Appl Environ Microbiol 60:691-696
    • (1994) Appl Environ Microbiol , vol.60 , pp. 691-696
    • Lloyd-Jones, G.1    De Jong, C.2    Ogden, R.C.3    Duetz, W.A.4    Williams, P.A.5
  • 86
    • 0027787617 scopus 로고
    • Characterization of a new 2,4-dichlorophenoxyacetic acid degrading plasmid pEST4011: Physical map and localization of catabolic genes
    • Mäe AA, Marits RO, Ausmees NR, Kôiv VM, Heinaru AL (1993) Characterization of a new 2,4-dichlorophenoxyacetic acid degrading plasmid pEST4011: physical map and localization of catabolic genes. J Gen Microbiol 139:3165-3170
    • (1993) J Gen Microbiol , vol.139 , pp. 3165-3170
    • Mäe, A.A.1    Marits, R.O.2    Ausmees, N.R.3    Kôiv, V.M.4    Heinaru, A.L.5
  • 87
    • 0037423746 scopus 로고    scopus 로고
    • Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676
    • Maeda K, Nojiri H, Shinatani M, Yoshida T, Habe H, Omori T (2003) Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676. J Mol Biol 326:21-33
    • (2003) J Mol Biol , vol.326 , pp. 21-33
    • Maeda, K.1    Nojiri, H.2    Shinatani, M.3    Yoshida, T.4    Habe, H.5    Omori, T.6
  • 88
    • 0034811709 scopus 로고    scopus 로고
    • Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP
    • Martinez B, Tomkins J, Wackett LP, Wing R, Sadowsky MJ (2001) Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP. J Bacteriol 183:5684-5697
    • (2001) J Bacteriol , vol.183 , pp. 5684-5697
    • Martinez, B.1    Tomkins, J.2    Wackett, L.P.3    Wing, R.4    Sadowsky, M.J.5
  • 89
    • 0031039131 scopus 로고    scopus 로고
    • The bphDEF meta-cleavage pathway genes involved in biphenyl/ polychlorinated biphenyl degradation are located on a linear plasmid and separated from the initial bphACB genes in Rhodococcus sp. strain RHA1
    • Masai E, Sugiyama K, Iwashita N, Shimizu S, Hauschild JE, Hatta T, Kimbara K, Yano K, Fukuda M (1997) The bphDEF meta-cleavage pathway genes involved in biphenyl/polychlorinated biphenyl degradation are located on a linear plasmid and separated from the initial bphACB genes in Rhodococcus sp. strain RHA1. Gene 187:141-149
    • (1997) Gene , vol.187 , pp. 141-149
    • Masai, E.1    Sugiyama, K.2    Iwashita, N.3    Shimizu, S.4    Hauschild, J.E.5    Hatta, T.6    Kimbara, K.7    Yano, K.8    Fukuda, M.9
  • 90
    • 0000183524 scopus 로고
    • pTDN1, a catabolic plasmid involved in aromatic amine catabolism in Pseudomonas putida mt-2
    • McClure NC, Venables WA (1987) pTDN1, a catabolic plasmid involved in aromatic amine catabolism in Pseudomonas putida mt-2. J Gen Microbiol 133:2073-2077
    • (1987) J Gen Microbiol , vol.133 , pp. 2073-2077
    • McClure, N.C.1    Venables, W.A.2
  • 91
    • 0038504021 scopus 로고    scopus 로고
    • Genomic islands and the evolution of catabolic pathways in bacteria
    • Meer JR van der, Sentchilo V (2003) Genomic islands and the evolution of catabolic pathways in bacteria. Curr Opin Biotechnol 14:248-254
    • (2003) Curr Opin Biotechnol , vol.14 , pp. 248-254
    • Van Der Meer, J.R.1    Sentchilo, V.2
  • 92
    • 0025961110 scopus 로고
    • Cloning and characterization of plasmid-encoded genes for the degradation of 1,2-dichloro-, 1,4-dichloro-, and 1,2,4-trichlorobenzene of Pseudomonas sp. strain P51
    • Meer JR van der, Neerven ARW van, Vries EJ de, Vos WM de, Zehnder AJB (1991a) Cloning and characterization of plasmid-encoded genes for the degradation of 1,2-dichloro-, 1,4-dichloro-, and 1,2,4-trichlorobenzene of Pseudomonas sp. strain P51. J Bacteriol 173:6-15
    • (1991) J Bacteriol , vol.173 , pp. 6-15
    • Van Der Meer, J.R.1    Van Neerven, A.R.W.2    De Vries, E.J.3    De Vos, W.M.4    Zehnder, A.J.B.5
  • 93
    • 0025719238 scopus 로고
    • Identification of a novel composite transposable element, Tn5280, carrying chlorobenzene dioxygenase genes of Pseudomonas sp. strain P51
    • Meer JR van der, Zehnder AJB, Vos WM de (1991b) Identification of a novel composite transposable element, Tn5280, carrying chlorobenzene dioxygenase genes of Pseudomonas sp. strain P51. J Bacteriol 173:7077-7083
    • (1991) J Bacteriol , vol.173 , pp. 7077-7083
    • Van Der Meer, J.R.1    Zehnder, A.J.B.2    De Vos, W.M.3
  • 94
    • 0035096460 scopus 로고    scopus 로고
    • The clc element of Pseudomonas sp. strain B13 and other mobile degradative elements employing phage-like integrases
    • Meer JR van der, Ravatn R, Sentchilo V (2001) The clc element of Pseudomonas sp. strain B13 and other mobile degradative elements employing phage-like integrases. Arch Microbiol 175:79-85
    • (2001) Arch Microbiol , vol.175 , pp. 79-85
    • Van Der Meer, J.R.1    Ravatn, R.2    Sentchilo, V.3
  • 96
    • 0032905533 scopus 로고    scopus 로고
    • Tn4371: A modular structure encoding a phage-like integrase, a Pseudomonas-like catabolic pathway, and RP4/Ti-like transfer functions
    • Merlin C, Springael D, Toussaint A (1999) Tn4371: a modular structure encoding a phage-like integrase, a Pseudomonas-like catabolic pathway, and RP4/Ti-like transfer functions. Plasmid 41:40-54
    • (1999) Plasmid , vol.41 , pp. 40-54
    • Merlin, C.1    Springael, D.2    Toussaint, A.3
  • 97
    • 0027396638 scopus 로고
    • Microbial degradation of dibenzofuran, fluorene, and dibenzo-p-dioxin by Staphylococcus auriculans DBF63
    • Monna L, Omori T, Kodama T (1993) Microbial degradation of dibenzofuran, fluorene, and dibenzo-p-dioxin by Staphylococcus auriculans DBF63. Appl Environ Microbiol 59:285-289
    • (1993) Appl Environ Microbiol , vol.59 , pp. 285-289
    • Monna, L.1    Omori, T.2    Kodama, T.3
  • 98
    • 0022479569 scopus 로고
    • Identification of a plasmid-borne parathion hydrolase gene from Flavobacterium sp. by Southern hybridization with opd from Pseudomonas diminuta
    • Mulbry WW, Karns JS, Kearney PC, Nelson JO, McDaniel CS, Wild JR (1986) Identification of a plasmid-borne parathion hydrolase gene from Flavobacterium sp. by Southern hybridization with opd from Pseudomonas diminuta. Appl Environ Microbiol 51:926-930
    • (1986) Appl Environ Microbiol , vol.51 , pp. 926-930
    • Mulbry, W.W.1    Karns, J.S.2    Kearney, P.C.3    Nelson, J.O.4    McDaniel, C.S.5    Wild, J.R.6
  • 99
    • 0034922780 scopus 로고    scopus 로고
    • The inverted repeats of IS1384, a newly described insertion sequence from Pseudomonas putida strain H, represent the specific target for integration of IS1383
    • Müller C, Lauf U, Hermann H (2001) The inverted repeats of IS1384, a newly described insertion sequence from Pseudomonas putida strain H, represent the specific target for integration of IS1383. Mol Genet Genomics 265:1004-1010
    • (2001) Mol Genet Genomics , vol.265 , pp. 1004-1010
    • Müller, C.1    Lauf, U.2    Hermann, H.3
  • 100
    • 0033387054 scopus 로고    scopus 로고
    • Complete analysis of genes and enzymes for γ-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26
    • Nagata Y, Miyauchi K, Takagi M (1999) Complete analysis of genes and enzymes for γ-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26. J Ind Microbiol Biotechnol 23:380-390
    • (1999) J Ind Microbiol Biotechnol , vol.23 , pp. 380-390
    • Nagata, Y.1    Miyauchi, K.2    Takagi, M.3
  • 101
    • 0025940311 scopus 로고
    • Chlorobenzoate catabolic transposon Tn5271 is a composite class I element with flanking class II insertion sequences
    • Nakatsu C, Ng J, Singh R, Straus N, Wyndham C (1991) Chlorobenzoate catabolic transposon Tn5271 is a composite class I element with flanking class II insertion sequences. Proc Natl Acad Sci USA 88:8312-8316
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 8312-8316
    • Nakatsu, C.1    Ng, J.2    Singh, R.3    Straus, N.4    Wyndham, C.5
  • 102
    • 0007689473 scopus 로고
    • Physical map of Nylon oligomer degradative plasmid pOAD2 harbored in Flavobacterium sp. KI72
    • Negoro S, Okada H (1982) Physical map of Nylon oligomer degradative plasmid pOAD2 harbored in Flavobacterium sp. KI72. Agric Biol Chem 46:745-750
    • (1982) Agric Biol Chem , vol.46 , pp. 745-750
    • Negoro, S.1    Okada, H.2
  • 103
    • 0018958497 scopus 로고
    • Plasmid control of 6-aminohexanoic acid cyclic dimer degradation enzymes of Flavobacterium sp. KI72
    • Negoro S, Shinagawa H, Nakata A, Kinoshita S, Hatozaki T, Okada H (1980) Plasmid control of 6-aminohexanoic acid cyclic dimer degradation enzymes of Flavobacterium sp. KI72. J Bacteriol 143:238-245
    • (1980) J Bacteriol , vol.143 , pp. 238-245
    • Negoro, S.1    Shinagawa, H.2    Nakata, A.3    Kinoshita, S.4    Hatozaki, T.5    Okada, H.6
  • 105
    • 0034019603 scopus 로고    scopus 로고
    • A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715
    • Nishi A, Tominaga K, Furukawa K (2000) A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715. J Bacteriol 182:1949-1955
    • (2000) J Bacteriol , vol.182 , pp. 1949-1955
    • Nishi, A.1    Tominaga, K.2    Furukawa, K.3
  • 106
    • 0034981075 scopus 로고    scopus 로고
    • Genetic characterization and evolutionary implications of a car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10
    • Nojiri H, Sekiguchi H, Maeda K, Urata M, Nakai S, Yoshida T, Habe H, Omori T (2001) Genetic characterization and evolutionary implications of a car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10. J Bacteriol 183:3663-3679
    • (2001) J Bacteriol , vol.183 , pp. 3663-3679
    • Nojiri, H.1    Sekiguchi, H.2    Maeda, K.3    Urata, M.4    Nakai, S.5    Yoshida, T.6    Habe, H.7    Omori, T.8
  • 108
    • 0028874677 scopus 로고
    • Recombination of a 3-chlorobenzoate catabolic plasmid from Alcaligenes eutrophus NH9 mediated by direct repeat elements
    • Ogawa N, Miyashita K (1995) Recombination of a 3-chlorobenzoate catabolic plasmid from Alcaligenes eutrophus NH9 mediated by direct repeat elements. Appl Environ Microbiol 61:3788-3795
    • (1995) Appl Environ Microbiol , vol.61 , pp. 3788-3795
    • Ogawa, N.1    Miyashita, K.2
  • 109
    • 0033046674 scopus 로고    scopus 로고
    • The chlorocatechol-catabolic transposon Tn5707 of Alcaligenes eutrophus NH9, carrying a gene cluster highly homologous to that in the 1,2,4-trichlorobenzene-degrading bacterium Pseudomonas sp. strain P51, confers the ability to grow on 3-chlorobenzoate
    • Ogawa N, Miyashita K (1999) The chlorocatechol-catabolic transposon Tn5707 of Alcaligenes eutrophus NH9, carrying a gene cluster highly homologous to that in the 1,2,4-trichlorobenzene-degrading bacterium Pseudomonas sp. strain P51, confers the ability to grow on 3-chlorobenzoate. Appl Environ Microbiol 65:724-731
    • (1999) Appl Environ Microbiol , vol.65 , pp. 724-731
    • Ogawa, N.1    Miyashita, K.2
  • 110
    • 0037423712 scopus 로고    scopus 로고
    • Identification of three novel salicylate 1-hydroxylases involved in the phenanthrene degradation of Sphingobium sp. strain P2
    • Onruthai P, Habe H, Yoshida T, Nojiri H, Omori T (2003) Identification of three novel salicylate 1-hydroxylases involved in the phenanthrene degradation of Sphingobium sp. strain P2. Biochem Biophys Res Commun 301:350-357
    • (2003) Biochem Biophys Res Commun , vol.301 , pp. 350-357
    • Onruthai, P.1    Habe, H.2    Yoshida, T.3    Nojiri, H.4    Omori, T.5
  • 111
    • 0031762849 scopus 로고    scopus 로고
    • Cloning and nucleotide sequence of carbazole catabolic genes from Pseudomonas stutzeri strain OM1, isolated from activated sludge
    • Ouchiyama N, Miyachi S, Omori T (1998) Cloning and nucleotide sequence of carbazole catabolic genes from Pseudomonas stutzeri strain OM1, isolated from activated sludge. J Gen Appl Microbiol 44:57-63
    • (1998) J Gen Appl Microbiol , vol.44 , pp. 57-63
    • Ouchiyama, N.1    Miyachi, S.2    Omori, T.3
  • 112
    • 0033966167 scopus 로고    scopus 로고
    • Identification and characterization of nitrobenzene catabolic plasmids pNB1 and pNB2 in Pseudomonas putida HS12
    • Park HS, Kim HS (2000) Identification and characterization of nitrobenzene catabolic plasmids pNB1 and pNB2 in Pseudomonas putida HS12. J Bacteriol 182:573-580
    • (2000) J Bacteriol , vol.182 , pp. 573-580
    • Park, H.S.1    Kim, H.S.2
  • 113
    • 0037979182 scopus 로고    scopus 로고
    • Identification and characterization of the conjugal transfer region of the pCg1 plasmid from naphthalene-degrading Pseudomonas putida Cg1
    • Park W, Jeon CO, Hohnstoch-Ashe AM, Winans SC, Zylstra GJ, Madsen EL (2003) Identification and characterization of the conjugal transfer region of the pCg1 plasmid from naphthalene-degrading Pseudomonas putida Cg1. Appl Environ Microbiol 69:3263-3271
    • (2003) Appl Environ Microbiol , vol.69 , pp. 3263-3271
    • Park, W.1    Jeon, C.O.2    Hohnstoch-Ashe, A.M.3    Winans, S.C.4    Zylstra, G.J.5    Madsen, E.L.6
  • 114
    • 0030780752 scopus 로고    scopus 로고
    • Acquisition of a deliberately introduced phenol degradation operon, pheBA, by different indigenous Pseudomonas species
    • Peters M, Heinaru E, Talpsep E, Wand H, Stottmeister U, Heinaru A, Nurk A (1997) Acquisition of a deliberately introduced phenol degradation operon, pheBA, by different indigenous Pseudomonas species. Appl Environ Microbiol 63:4899-4906
    • (1997) Appl Environ Microbiol , vol.63 , pp. 4899-4906
    • Peters, M.1    Heinaru, E.2    Talpsep, E.3    Wand, H.4    Stottmeister, U.5    Heinaru, A.6    Nurk, A.7
  • 115
    • 0034029582 scopus 로고    scopus 로고
    • Role of horizontal gene transfer and gene integration in evolution of 1,3-dichloropropene- and 1,2-dibromoethane-degradative pathways
    • Poelarends GJ, Kulakov LA, Larkin MJ, Hylckama Vlieg JET van, Janssen DB (2000a) Role of horizontal gene transfer and gene integration in evolution of 1,3-dichloropropene- and 1,2-dibromoethane-degradative pathways. J Bacteriol 182:2191-2199
    • (2000) J Bacteriol , vol.182 , pp. 2191-2199
    • Poelarends, G.J.1    Kulakov, L.A.2    Larkin, M.J.3    Van Hylckama Vlieg, J.E.T.4    Janssen, D.B.5
  • 116
    • 0034098678 scopus 로고    scopus 로고
    • Haloalkane-utilizing Rhodococcus strains isolated from geographically distinct locations possess a highly conserved gene cluster encoding haloalkane catabolism
    • Poelarends GJ, Zandstra M, Bosma T, Kulakov LA, Larkin MJ, Marchesi JR, Weightman AJ, Janssen DB (2000b) Haloalkane-utilizing Rhodococcus strains isolated from geographically distinct locations possess a highly conserved gene cluster encoding haloalkane catabolism. J Bacteriol 182:2725-2731
    • (2000) J Bacteriol , vol.182 , pp. 2725-2731
    • Poelarends, G.J.1    Zandstra, M.2    Bosma, T.3    Kulakov, L.A.4    Larkin, M.J.5    Marchesi, J.R.6    Weightman, A.J.7    Janssen, D.B.8
  • 117
    • 0036656358 scopus 로고    scopus 로고
    • Complete characterization of Tn5530 from Burkholderia cepacia strain 2a (pIJB1) and studies of 2,4-dichlorophenoxyacetate uptake by the organism
    • Poh RPC, Smith ARW, Bruce IJ (2002) Complete characterization of Tn5530 from Burkholderia cepacia strain 2a (pIJB1) and studies of 2,4- dichlorophenoxyacetate uptake by the organism. Plasmid 48:1-12
    • (2002) Plasmid , vol.48 , pp. 1-12
    • Poh, R.P.C.1    Smith, A.R.W.2    Bruce, I.J.3
  • 118
    • 0035434341 scopus 로고    scopus 로고
    • Identification and functional characterization of CbaR, a MarR-Like modulator of the cbaABC-encoded chlorobenzoate catabolism pathway
    • Providenti MA, Wyndham RC (2001) Identification and functional characterization of CbaR, a MarR-Like modulator of the cbaABC-encoded chlorobenzoate catabolism pathway. Appl Environ Microbiol 67:3530-3541
    • (2001) Appl Environ Microbiol , vol.67 , pp. 3530-3541
    • Providenti, M.A.1    Wyndham, R.C.2
  • 119
    • 0028136635 scopus 로고
    • Chromosomal gene capture mediated by the Pseudomonas putida TOL catabolic plasmid
    • Ramos-Gonzáles MI, Ramos-Díaz MA, Ramos JL (1994) Chromosomal gene capture mediated by the Pseudomonas putida TOL catabolic plasmid. J Bacteriol 176:4635-4641
    • (1994) J Bacteriol , vol.176 , pp. 4635-4641
    • Ramos-Gonzáles, M.I.1    Ramos-Díaz, M.A.2    Ramos, J.L.3
  • 120
    • 0031751325 scopus 로고    scopus 로고
    • Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. strain B13
    • Ravatn R, Studer S, Springael D, Zehnder AJB, Meer JR van der (1998a) Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. strain B13. J Bacteriol 180:4360-4369
    • (1998) J Bacteriol , vol.180 , pp. 4360-4369
    • Ravatn, R.1    Studer, S.2    Springael, D.3    Zehnder, A.J.B.4    Van Der Meer, J.R.5
  • 121
    • 0031740749 scopus 로고    scopus 로고
    • Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrate family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. strain B13
    • Ravatn R, Studer S, Zehnder AJB, Meer JR van der (1998b) Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrate family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. strain B13. J Bacteriol 180:5505-5514
    • (1998) J Bacteriol , vol.180 , pp. 5505-5514
    • Ravatn, R.1    Studer, S.2    Zehnder, A.J.B.3    Van Der Meer, J.R.4
  • 122
    • 0031745938 scopus 로고    scopus 로고
    • Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated-sludge microcosm
    • Ravatn R, Zehnder AJB, Meer JR van der (1998c) Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated-sludge microcosm. Appl Environ Microbiol 64:2126-2132
    • (1998) Appl Environ Microbiol , vol.64 , pp. 2126-2132
    • Ravatn, R.1    Zehnder, A.J.B.2    Van Der Meer, J.R.3
  • 123
    • 0028123063 scopus 로고
    • Two identical copies of IS1246, a 1275 base pair sequence related to other bacterial insertion sequences, enclose the xyl genes on TOL plasmid pWW0
    • Reddy BR, Shaw LE, Sayers JR, Williams PA (1994) Two identical copies of IS1246, a 1275 base pair sequence related to other bacterial insertion sequences, enclose the xyl genes on TOL plasmid pWW0. Microbiology 140:2305-2307
    • (1994) Microbiology , vol.140 , pp. 2305-2307
    • Reddy, B.R.1    Shaw, L.E.2    Sayers, J.R.3    Williams, P.A.4
  • 124
    • 0015595926 scopus 로고
    • A transmissible plasmid controlling camphor oxidation in Pseudomonas putida
    • Rheinwald JG, Chakrabarty AM, Gunsalus IC (1973) A transmissible plasmid controlling camphor oxidation in Pseudomonas putida. Proc Natl Acad Sci USA 70:885-889
    • (1973) Proc Natl Acad Sci USA , vol.70 , pp. 885-889
    • Rheinwald, J.G.1    Chakrabarty, A.M.2    Gunsalus, I.C.3
  • 125
    • 0345381843 scopus 로고    scopus 로고
    • Purification and properties of 2-hydroxy-6-oxo-6-(2′-arninophenyl) hexa-2,4-dienoic acid hydrolase involved in microbial degradation of carbazole
    • Riddle RR, Gibbs PR, Willson RC, Benedik MJ (2003) Purification and properties of 2-hydroxy-6-oxo-6-(2′-arninophenyl)hexa-2,4-dienoic acid hydrolase involved in microbial degradation of carbazole. Protein Expr Purif 28:182-189
    • (2003) Protein Expr Purif , vol.28 , pp. 182-189
    • Riddle, R.R.1    Gibbs, P.R.2    Willson, R.C.3    Benedik, M.J.4
  • 128
    • 0032805566 scopus 로고    scopus 로고
    • Degradation of trichloroethene by a linear-plasmid-encoded alkene monooxygenase in Rhodococcus corallinus (Norcardia corallina) B-276
    • Saeki H, Akira M, Furuhashi K, Averhoff B, Gottschalk G (1999) Degradation of trichloroethene by a linear-plasmid-encoded alkene monooxygenase in Rhodococcus corallinus (Norcardia corallina) B-276. Microbiology 145:1721-1730
    • (1999) Microbiology , vol.145 , pp. 1721-1730
    • Saeki, H.1    Akira, M.2    Furuhashi, K.3    Averhoff, B.4    Gottschalk, G.5
  • 129
    • 0025249988 scopus 로고
    • Physical map of the aromatic amine and m-toluate catabolic plasmid pTDN1 in Pseudomonas putida: Location of a unique meto-cleavage pathway
    • Saint CP, McClure NC, Venables WA (1990) Physical map of the aromatic amine and m-toluate catabolic plasmid pTDN1 in Pseudomonas putida: location of a unique meto-cleavage pathway. J Gen Microbiol 136:615-625
    • (1990) J Gen Microbiol , vol.136 , pp. 615-625
    • Saint, C.P.1    McClure, N.C.2    Venables, W.A.3
  • 130
    • 0030744612 scopus 로고    scopus 로고
    • Identification and characterization of genes encoding carbazole 1,9a-dioxygenase in Pseudomonas sp. strain CA10
    • Sato S, Nam JW, Kasuga K, Nojiri H, Yamane H, Omori T (1997a) Identification and characterization of genes encoding carbazole 1,9a-dioxygenase in Pseudomonas sp. strain CA10. J Bacteriol 179:4850-4858
    • (1997) J Bacteriol , vol.179 , pp. 4850-4858
    • Sato, S.1    Nam, J.W.2    Kasuga, K.3    Nojiri, H.4    Yamane, H.5    Omori, T.6
  • 131
    • 0030855128 scopus 로고    scopus 로고
    • Cloning of genes involved in carbazole degradation of Pseudomonas sp. strain CA10: Nucleotide sequences of genes and characterization of meto-cleavage enzymes and hydrolase
    • Sato S, Ouchiyama N, Kimura T, Nojiri H, Yamane H, Omori T (1997b) Cloning of genes involved in carbazole degradation of Pseudomonas sp. strain CA10: nucleotide sequences of genes and characterization of meto-cleavage enzymes and hydrolase. J Bacteriol 179:4841-4849
    • (1997) J Bacteriol , vol.179 , pp. 4841-4849
    • Sato, S.1    Ouchiyama, N.2    Kimura, T.3    Nojiri, H.4    Yamane, H.5    Omori, T.6
  • 132
    • 0033941481 scopus 로고    scopus 로고
    • Molecular diversity of plasmids bearing genes that encode toluene and xylene metabolism in Pseudomonas strains isolated from different contaminated site in Belarus
    • Sentchilo VS, Perebituk AN, Zehnder AJB, Meer JR van der (2000) Molecular diversity of plasmids bearing genes that encode toluene and xylene metabolism in Pseudomonas strains isolated from different contaminated site in Belarus. Appl Environ Microbiol 66:2842-2852
    • (2000) Appl Environ Microbiol , vol.66 , pp. 2842-2852
    • Sentchilo, V.S.1    Perebituk, A.N.2    Zehnder, A.J.B.3    Van Der Meer, J.R.4
  • 133
    • 0024432890 scopus 로고
    • Isolation and characterization of altered plasmids in mutant strains of Pseudomonas putida NCIB 9816
    • Serdar CM, Gibson DT (1989) Isolation and characterization of altered plasmids in mutant strains of Pseudomonas putida NCIB 9816. Biochem Biophys Res Commun 164:764-771
    • (1989) Biochem Biophys Res Commun , vol.164 , pp. 764-771
    • Serdar, C.M.1    Gibson, D.T.2
  • 135
    • 0024074764 scopus 로고
    • Physical and functional mapping of two cointegrate plasmids derived fiom RP4 and TOL plasmid pDK1
    • Shaw LE, Williams PA (1988) Physical and functional mapping of two cointegrate plasmids derived fiom RP4 and TOL plasmid pDK1. J Gen Microbiol 134:2463-2474
    • (1988) J Gen Microbiol , vol.134 , pp. 2463-2474
    • Shaw, L.E.1    Williams, P.A.2
  • 136
    • 0035350114 scopus 로고    scopus 로고
    • Characterization of the 450-kb linear plasmid in a polychlorinated biphenyl degrader, Rhodococcus sp. strain RHA1
    • Shimizu S, Kobayashi H, Masai E, Fukuda M (2001) Characterization of the 450-kb linear plasmid in a polychlorinated biphenyl degrader, Rhodococcus sp. strain RHA1. Appl Environ Microbiol 67:2021-2028
    • (2001) Appl Environ Microbiol , vol.67 , pp. 2021-2028
    • Shimizu, S.1    Kobayashi, H.2    Masai, E.3    Fukuda, M.4
  • 139
    • 0036249529 scopus 로고    scopus 로고
    • Characterization of a class II defective transposon carrying two haloacetate dehydrogenase genes from Delftia acidovorans plasmid pUO1
    • Sota M, Endo M, Nitta K, Kawasaki H, Tsuda M (2002) Characterization of a class II defective transposon carrying two haloacetate dehydrogenase genes from Delftia acidovorans plasmid pUO1. Appl Environ Microbiol 68:2307-2315
    • (2002) Appl Environ Microbiol , vol.68 , pp. 2307-2315
    • Sota, M.1    Endo, M.2    Nitta, K.3    Kawasaki, H.4    Tsuda, M.5
  • 140
    • 0242575001 scopus 로고    scopus 로고
    • Structure of haloacetate-catabolic IncP-1β plasmid pUO1 and genetic mobility of its residing haloacetate-catabolic transposon
    • Sota M, Kawasaki H, Tsuda M (2003) Structure of haloacetate-catabolic IncP-1β plasmid pUO1 and genetic mobility of its residing haloacetate-catabolic transposon. J Bacteriol 185:6741-6745
    • (2003) J Bacteriol , vol.185 , pp. 6741-6745
    • Sota, M.1    Kawasaki, H.2    Tsuda, M.3
  • 141
    • 0031745940 scopus 로고    scopus 로고
    • The atzABC genes encoding atrazine catabolism are located on a self-transmissible plasmid in Pseudomonas sp. strain ADP
    • Souza ML de, Wackett LP, Sadowsky MJ (1998) The atzABC genes encoding atrazine catabolism are located on a self-transmissible plasmid in Pseudomonas sp. strain ADP. Appl Environ Microbiol 64:2323-2326
    • (1998) Appl Environ Microbiol , vol.64 , pp. 2323-2326
    • De Souza, M.L.1    Wackett, L.P.2    Sadowsky, M.J.3
  • 142
    • 0027404658 scopus 로고
    • Identification of a catabolic transposon, Tn4371, carrying biphenyl and 4-chlorobiphenyl degradation genes in Alcaligenes eutrophus A5
    • Springael D, Kreps S, Mergeay M (1993) Identification of a catabolic transposon, Tn4371, carrying biphenyl and 4-chlorobiphenyl degradation genes in Alcaligenes eutrophus A5. J Bacteriol 175:1674-1681
    • (1993) J Bacteriol , vol.175 , pp. 1674-1681
    • Springael, D.1    Kreps, S.2    Mergeay, M.3
  • 143
    • 0035166827 scopus 로고    scopus 로고
    • Occurrence of Tn4371-related mobile elements and sequences in (chloro)biphenyl-degrading bacteria
    • Springael D, Ryngaert A, Merlin C, Toussaint A, Mergeay M (2001) Occurrence of Tn4371-related mobile elements and sequences in (chloro)biphenyl-degrading bacteria. J Bacteriol 67:42-50
    • (2001) J Bacteriol , vol.67 , pp. 42-50
    • Springael, D.1    Ryngaert, A.2    Merlin, C.3    Toussaint, A.4    Mergeay, M.5
  • 144
    • 0023144333 scopus 로고
    • Cloning and expression in Escherichia coli of Klebsiella ozaenae plasmid-borne gene encoding a nitrilase specific for the herbicide bromoxynil
    • Stalker DM, McBride KE (1987) Cloning and expression in Escherichia coli of Klebsiella ozaenae plasmid-borne gene encoding a nitrilase specific for the herbicide bromoxynil. J Bacteriol 169:955-960
    • (1987) J Bacteriol , vol.169 , pp. 955-960
    • Stalker, D.M.1    McBride, K.E.2
  • 145
    • 0042389561 scopus 로고    scopus 로고
    • Complete nucleotide sequence and genetic organization of the 210-kilobase linear plasmid of Rhodococcus erythropolis BD2
    • Stecker C, Johann A, Herzberg C, Averhoff B, Gottschalk G (2003) Complete nucleotide sequence and genetic organization of the 210-kilobase linear plasmid of Rhodococcus erythropolis BD2. J Bacteriol 185:5269-5274
    • (2003) J Bacteriol , vol.185 , pp. 5269-5274
    • Stecker, C.1    Johann, A.2    Herzberg, C.3    Averhoff, B.4    Gottschalk, G.5
  • 146
    • 0029119519 scopus 로고
    • Physical mapping and characterization of a catabolic plasmid from the deep-subsurface bacterium Sphingomonas sp. strain F199
    • Stillwell LC, Thurston SJ, Schneider RP, Romine MF, Fredrickson JK, Saffer JD (1995) Physical mapping and characterization of a catabolic plasmid from the deep-subsurface bacterium Sphingomonas sp. strain F199. J Bacteriol 177:4537-4539
    • (1995) J Bacteriol , vol.177 , pp. 4537-4539
    • Stillwell, L.C.1    Thurston, S.J.2    Schneider, R.P.3    Romine, M.F.4    Fredrickson, J.K.5    Saffer, J.D.6
  • 148
    • 0031710278 scopus 로고    scopus 로고
    • Plasmids responsible for horizontal transfer of naphthalene catabolism genes between bacteria at a coal tarcontaminated site are homologous to pDTG1 from Pseudomonas putida NCIB 9816-4
    • Stuart-Keil KG, Hohnstock AM, Drees KP, Herrick JB, Madsen EL (1998) Plasmids responsible for horizontal transfer of naphthalene catabolism genes between bacteria at a coal tarcontaminated site are homologous to pDTG1 from Pseudomonas putida NCIB 9816-4. Appl Environ Microbiol 64:3633-3640
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3633-3640
    • Stuart-Keil, K.G.1    Hohnstock, A.M.2    Drees, K.P.3    Herrick, J.B.4    Madsen, E.L.5
  • 149
    • 0033384422 scopus 로고    scopus 로고
    • Retrotransfer or gene capture: A feature of conjugative plasmids, with ecological and evolutional significance
    • Szpirer C, Top E, Couturier M, Mergeay M (1999) Retrotransfer or gene capture: a feature of conjugative plasmids, with ecological and evolutional significance. Microbiology 145:3321-3329
    • (1999) Microbiology , vol.145 , pp. 3321-3329
    • Szpirer, C.1    Top, E.2    Couturier, M.3    Mergeay, M.4
  • 150
    • 0036950947 scopus 로고    scopus 로고
    • Detailed comparison between the substrate specificities of two angular dioxygenases, dibenzofuran 4,4a-dioxygenase from Terrabacter sf. and carbazole 1,9a-dioxygenase from Pseudomonas resinovorans
    • Takagi T, Nojiri H, Yoshida T, Habe H, Omori T (2002) Detailed comparison between the substrate specificities of two angular dioxygenases, dibenzofuran 4,4a-dioxygenase from Terrabacter sf. and carbazole 1,9a-dioxygenase from Pseudomonas resinovorans. Biotechnol Lett 24:2099-2106
    • (2002) Biotechnol Lett , vol.24 , pp. 2099-2106
    • Takagi, T.1    Nojiri, H.2    Yoshida, T.3    Habe, H.4    Omori, T.5
  • 151
    • 0032898995 scopus 로고    scopus 로고
    • Bacterial catabolic transposons
    • Tan HM (1999) Bacterial catabolic transposons. Appl Microbiol Biotechnol 51:1-12
    • (1999) Appl Microbiol Biotechnol , vol.51 , pp. 1-12
    • Tan, H.M.1
  • 152
    • 0027159649 scopus 로고
    • Molecular analysis of the plasmid-borne bed gene cluster from Pseudomonas putida ML2 and cloning of the cis-benzene dihydrodiol dehydrogenase gene
    • Tan HM, Fong KPY (1993) Molecular analysis of the plasmid-borne bed gene cluster from Pseudomonas putida ML2 and cloning of the cis-benzene dihydrodiol dehydrogenase gene. Can J Microbiol 39:357-362
    • (1993) Can J Microbiol , vol.39 , pp. 357-362
    • Tan, H.M.1    Fong, K.P.Y.2
  • 153
    • 0025165563 scopus 로고
    • Cloning and expression of the plasmid-encoded benzene dioxygenase genes from Pseudomonas putida ML2
    • Tan HM, Mason JR (1990) Cloning and expression of the plasmid-encoded benzene dioxygenase genes from Pseudomonas putida ML2. FEMS Microbiol Lett 72:259-264
    • (1990) FEMS Microbiol Lett , vol.72 , pp. 259-264
    • Tan, H.M.1    Mason, J.R.2
  • 154
    • 0017815582 scopus 로고
    • NIC, a conjugative nicotine-nicotinate degradative plasmid in Pseudomonas convexa
    • Thacker R, Rørvig O, Kahlon P, Gunsalus IC (1978) NIC, a conjugative nicotine-nicotinate degradative plasmid in Pseudomonas convexa. J Bacteriol 135:289-290
    • (1978) J Bacteriol , vol.135 , pp. 289-290
    • Thacker, R.1    Rørvig, O.2    Kahlon, P.3    Gunsalus, I.C.4
  • 155
    • 0026529669 scopus 로고
    • The dehalogenase gene dehI from Pseudomonas putida PP3 is carried on an unusual mobile genetic element designated DEH
    • Thomas AW, Slater JH, Weightman AJ (1992) The dehalogenase gene dehI from Pseudomonas putida PP3 is carried on an unusual mobile genetic element designated DEH. J Bacteriol 174:1932-1940
    • (1992) J Bacteriol , vol.174 , pp. 1932-1940
    • Thomas, A.W.1    Slater, J.H.2    Weightman, A.J.3
  • 156
    • 0038820052 scopus 로고    scopus 로고
    • The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds
    • Top EM, Springael D (2003) The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds. Curr Opin Biotechnol 14:262-269
    • (2003) Curr Opin Biotechnol , vol.14 , pp. 262-269
    • Top, E.M.1    Springael, D.2
  • 157
    • 0029020201 scopus 로고
    • Characterization of diverse 2,4-dichlorophenoxyacetic acid-degradative plasmids isolated from soil by complementation
    • Top EM, Holben WE, Forney LJ (1995) Characterization of diverse 2,4-dichlorophenoxyacetic acid-degradative plasmids isolated from soil by complementation. Appl Environ Microbiol 61:1691-1698
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1691-1698
    • Top, E.M.1    Holben, W.E.2    Forney, L.J.3
  • 159
    • 0036848574 scopus 로고    scopus 로고
    • Catabolic mobile genetic elements and their potential use in bioremediation of polluted soils and waters
    • Top EM, Springael D, Boon N (2002) Catabolic mobile genetic elements and their potential use in bioremediation of polluted soils and waters. FEMS Microbiol Ecol 42:199-208
    • (2002) FEMS Microbiol Ecol , vol.42 , pp. 199-208
    • Top, E.M.1    Springael, D.2    Boon, N.3
  • 160
    • 0038018390 scopus 로고    scopus 로고
    • The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn4371, a member of a new family of genomic islands related to IncP and Ti plasmid
    • Toussaint A, Merlin C, Monchy S, Benotmane MA, Leplae R, Mergeay M, Springael D (2003) The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn4371, a member of a new family of genomic islands related to IncP and Ti plasmid. Appl Environ Microbiol 69:4837-4845
    • (2003) Appl Environ Microbiol , vol.69 , pp. 4837-4845
    • Toussaint, A.1    Merlin, C.2    Monchy, S.3    Benotmane, M.A.4    Leplae, R.5    Mergeay, M.6    Springael, D.7
  • 161
    • 0035318462 scopus 로고    scopus 로고
    • Map of the IncP1β plasmid pTSA encoding the widespread genes (tsa) for p-tohienesulfonate degradation in Comamonas teststeroni T-2
    • Tralau T, Cook AM, Ruff J (2001) Map of the IncP1β plasmid pTSA encoding the widespread genes (tsa) for p-tohienesulfonate degradation in Comamonas teststeroni T-2. Appl Environ Microbiol 67:1508-1516
    • (2001) Appl Environ Microbiol , vol.67 , pp. 1508-1516
    • Tralau, T.1    Cook, A.M.2    Ruff, J.3
  • 162
    • 0002123617 scopus 로고    scopus 로고
    • Catabolic transposons in pseudomonads
    • Nakazawa T, Furukawa K, Haas D, Silver S (eds). American Society for Microbiology, Washington, D.C.
    • Tsuda M (1996) Catabolic transposons in pseudomonads. In: Nakazawa T, Furukawa K, Haas D, Silver S (eds) Molecular biology of pseudomonads. American Society for Microbiology, Washington, D.C., pp 219-228
    • (1996) Molecular Biology of Pseudomonads , pp. 219-228
    • Tsuda, M.1
  • 163
    • 0035688599 scopus 로고    scopus 로고
    • Identification and characterization of Tn4656, a novel class II transposon carrying a set of toluene-degrading genes from TOL plasmid pWW53
    • Tsuda M, Genka H (2001) Identification and characterization of Tn4656, a novel class II transposon carrying a set of toluene-degrading genes from TOL plasmid pWW53. J Bacteriol 183:6215-6224
    • (2001) J Bacteriol , vol.183 , pp. 6215-6224
    • Tsuda, M.1    Genka, H.2
  • 164
    • 0023504678 scopus 로고
    • Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWW0
    • Tsuda M, Iino T (1987) Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWW0. Mol Gen Genet 210:270-276
    • (1987) Mol Gen Genet , vol.210 , pp. 270-276
    • Tsuda, M.1    Iino, T.2
  • 165
    • 0024046404 scopus 로고
    • Identification and characterization of Tn4653, a transposon covering the toluene transposon Tn4651 on TOL plasmid pWW0
    • Tsuda M, Iino T (1988) Identification and characterization of Tn4653, a transposon covering the toluene transposon Tn4651 on TOL plasmid pWW0. Mol Gen Genet 213:72-77
    • (1988) Mol Gen Genet , vol.213 , pp. 72-77
    • Tsuda, M.1    Iino, T.2
  • 166
    • 0025073507 scopus 로고
    • Naphthalene degrading genes on plasmid NAH7 are on a defective transposon
    • Tsuda M, Iino T (1990) Naphthalene degrading genes on plasmid NAH7 are on a defective transposon. Mol Gen Genet 223:33-39
    • (1990) Mol Gen Genet , vol.223 , pp. 33-39
    • Tsuda, M.1    Iino, T.2
  • 167
    • 0024574036 scopus 로고
    • Toluene transposons Tn4651 and Tn4653 are class II transposons
    • Tsuda M, Ninegishi K, Iino T (1989) Toluene transposons Tn4651 and Tn4653 are class II transposons. J Bacteriol 171:1386-1393
    • (1989) J Bacteriol , vol.171 , pp. 1386-1393
    • Tsuda, M.1    Ninegishi, K.2    Iino, T.3
  • 169
    • 0034655510 scopus 로고    scopus 로고
    • Characterization of the naphthalene-degrading bacterium, Rhodococcus opacus M213
    • Uz I, Duan YP, Ogram A (2000) Characterization of the naphthalene-degrading bacterium, Rhodococcus opacus M213. FEMS Microbiol Lett 185:231-238
    • (2000) FEMS Microbiol Lett , vol.185 , pp. 231-238
    • Uz, I.1    Duan, Y.P.2    Ogram, A.3
  • 170
    • 0033037330 scopus 로고    scopus 로고
    • Phylogenetic analyses indicate independent recruitment of diverse gene cassettes during assemblage of the 2,4-D catabolic pathway
    • Vallaeys T, Courde L, McGowan C, Wright AD, Fulthorpe RR (1999) Phylogenetic analyses indicate independent recruitment of diverse gene cassettes during assemblage of the 2,4-D catabolic pathway. FEMS Microbiol Ecol 28:373-382
    • (1999) FEMS Microbiol Ecol , vol.28 , pp. 373-382
    • Vallaeys, T.1    Courde, L.2    McGowan, C.3    Wright, A.D.4    Fulthorpe, R.R.5
  • 171
    • 0342844467 scopus 로고    scopus 로고
    • Analysis of the 2,4-dichlorophenoxyacetic acid-degradative plasmid pEST4011 of Achromobacter xylosoxidans subsp. denitrificans strain EST4002
    • Vedler E, Kõiv V, Heinaru A (2000) Analysis of the 2,4-dichlorophenoxyacetic acid-degradative plasmid pEST4011 of Achromobacter xylosoxidans subsp. denitrificans strain EST4002. Gene 225:281-288
    • (2000) Gene , vol.225 , pp. 281-288
    • Vedler, E.1    Kõiv, V.2    Heinaru, A.3
  • 172
    • 0036889485 scopus 로고    scopus 로고
    • Transposition of DEH, a broad-host-range transposon flanked by ISPpu12, in Pseudomonas putida is associated with genomic rearrangements and dehalogenase gene silencing
    • Weightman AJ, Topping AW, Hill KE, Lee LL, Sakai K, Slater JH, Thomas AW (2002) Transposition of DEH, a broad-host-range transposon flanked by ISPpu12, in Pseudomonas putida is associated with genomic rearrangements and dehalogenase gene silencing. J Bacteriol 184:6581-6591
    • (2002) J Bacteriol , vol.184 , pp. 6581-6591
    • Weightman, A.J.1    Topping, A.W.2    Hill, K.E.3    Lee, L.L.4    Sakai, K.5    Slater, J.H.6    Thomas, A.W.7
  • 173
    • 0036937356 scopus 로고    scopus 로고
    • Global features of the Pseudomonas putida KT2440 genome sequence
    • Weinel C, Nelson KE, Tümmler B (2002) Global features of the Pseudomonas putida KT2440 genome sequence. Environ Microbiol 4:809-818
    • (2002) Environ Microbiol , vol.4 , pp. 809-818
    • Weinel, C.1    Nelson, K.E.2    Tümmler, B.3
  • 175
    • 0016197816 scopus 로고
    • Metabolism of benzoate and the methylbenzoates by Pseudomonas putida (arvilla) mt-2: Evidence for the existence of a TOL plasmid
    • Williams PA, Murray K (1974) Metabolism of benzoate and the methylbenzoates by Pseudomonas putida (arvilla) mt-2: evidence for the existence of a TOL plasmid. J Bacteriol 120:416-423
    • (1974) J Bacteriol , vol.120 , pp. 416-423
    • Williams, P.A.1    Murray, K.2
  • 176
    • 0036889289 scopus 로고    scopus 로고
    • A third transposable element, ISPpu12, from the toluene-xylene catabolic plasmid pWW0 of Pseudomonas putida mt-2
    • Williams PA, Jones RM, Shaw LE (2002) A third transposable element, ISPpu12, from the toluene-xylene catabolic plasmid pWW0 of Pseudomonas putida mt-2. J Bacteriol 184:6572-6580
    • (2002) J Bacteriol , vol.184 , pp. 6572-6580
    • Williams, P.A.1    Jones, R.M.2    Shaw, L.E.3
  • 177
    • 0023403379 scopus 로고
    • pWW174: A large plasmid from Acinetobacter calcoaceticus encoding benzene catabolism by the β-ketoadipate pathway
    • Winstanley C, Taylor SC, Williams PA (1987) pWW174: a large plasmid from Acinetobacter calcoaceticus encoding benzene catabolism by the β-ketoadipate pathway. Mol Microbiol 1:219-227
    • (1987) Mol Microbiol , vol.1 , pp. 219-227
    • Winstanley, C.1    Taylor, S.C.2    Williams, P.A.3
  • 178
    • 0023747445 scopus 로고
    • Catabolic instability, plasmid gene deletion and recombination in Alcaligenes sp. BR60
    • Wyndham RC, Singh RK, Straus NA (1988) Catabolic instability, plasmid gene deletion and recombination in Alcaligenes sp. BR60. Arch Microbiol 150:237-243
    • (1988) Arch Microbiol , vol.150 , pp. 237-243
    • Wyndham, R.C.1    Singh, R.K.2    Straus, N.A.3
  • 179
    • 0031917050 scopus 로고    scopus 로고
    • A novel plasmid pIJB1 possessing a putative 2,4-dichlorophe-noxyacetate degradative transposon Tn5530 in Burkholderia cepacia strain 2a
    • Xia XS, Aathithan S, Oswiecimska K, Smith ARW, Bruce IJ (2001) A novel plasmid pIJB1 possessing a putative 2,4-dichlorophe-noxyacetate degradative transposon Tn5530 in Burkholderia cepacia strain 2a. Plasmid 39:154-159
    • (2001) Plasmid , vol.39 , pp. 154-159
    • Xia, X.S.1    Aathithan, S.2    Oswiecimska, K.3    Smith, A.R.W.4    Bruce, I.J.5
  • 180
    • 0018970655 scopus 로고
    • pKJ1, a naturally occurring conjugative plasmid coding for toluene degradation and resistance to streptomycin and sulfonamides
    • Yano K, Nishi T (1980) pKJ1, a naturally occurring conjugative plasmid coding for toluene degradation and resistance to streptomycin and sulfonamides. J Bacteriol 143:552-560
    • (1980) J Bacteriol , vol.143 , pp. 552-560
    • Yano, K.1    Nishi, T.2
  • 181
    • 0023705037 scopus 로고
    • Genetics of naphthalene catabolism in pseudomonads
    • Yen KM, Serdar CM (1988) Genetics of naphthalene catabolism in pseudomonads. Crit Rev Microbiol 15:247-268
    • (1988) Crit Rev Microbiol , vol.15 , pp. 247-268
    • Yen, K.M.1    Serdar, C.M.2
  • 182
    • 0034961537 scopus 로고    scopus 로고
    • Isolation and characterization of group II introns from Pseudomonas alcaligenes and Pseudomonas putida
    • Yeo CC, Yiin S, Tan BH, Poh CL (2001) Isolation and characterization of group II introns from Pseudomonas alcaligenes and Pseudomonas putida. Plasmid 45:233-239
    • (2001) Plasmid , vol.45 , pp. 233-239
    • Yeo, C.C.1    Yiin, S.2    Tan, B.H.3    Poh, C.L.4
  • 183
    • 0031468281 scopus 로고    scopus 로고
    • Aromatic hydrocarbon degradation by Sphingomonas yanoikuyae B1
    • Zylstra GJ, Kim E (1997) Aromatic hydrocarbon degradation by Sphingomonas yanoikuyae B1. J Ind Microbiol Biotechnol 19:408-414
    • (1997) J Ind Microbiol Biotechnol , vol.19 , pp. 408-414
    • Zylstra, G.J.1    Kim, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.