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Volumn 182, Issue 7, 2000, Pages 1949-1955

A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BENZOIC ACID; BIPHENYL; SALICYLIC ACID;

EID: 0034019603     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.182.7.1949-1955.2000     Document Type: Article
Times cited : (63)

References (40)
  • 1
    • 84907112796 scopus 로고
    • Aerobic and anaerobic biodegradation of PCBs: A review
    • Abramowicz, D. A. 1990. Aerobic and anaerobic biodegradation of PCBs: a review. Crit. Rev. Biotechnol. 10:241-251.
    • (1990) Crit. Rev. Biotechnol. , vol.10 , pp. 241-251
    • Abramowicz, D.A.1
  • 2
    • 0026078804 scopus 로고
    • Tn5253, the pneumococcal omega (cat tet) BM6001 element, is a composite structure of two conjugative transposons, Tn5251 and Tn5252
    • Ayoubi, P., A. Kilic, and M. Vijayakumar. 1991. Tn5253, the pneumococcal omega (cat tet) BM6001 element, is a composite structure of two conjugative transposons, Tn5251 and Tn5252. J. Bacteriol. 173:1617-1622.
    • (1991) J. Bacteriol. , vol.173 , pp. 1617-1622
    • Ayoubi, P.1    Kilic, A.2    Vijayakumar, M.3
  • 3
    • 0022621961 scopus 로고
    • Rapid assay for screening and characterizing microorganisms for the ability to degrade polychlorinated biphenyls
    • Bedard, D. L., R. Unterman, L. H. Bopp, M. J. Brennan, M. L. Haberl, and C. Johnson. 1986. Rapid assay for screening and characterizing microorganisms for the ability to degrade polychlorinated biphenyls. Appl. Environ. Microbiol. 51:761-768.
    • (1986) Appl. Environ. Microbiol. , vol.51 , pp. 761-768
    • Bedard, D.L.1    Unterman, R.2    Bopp, L.H.3    Brennan, M.J.4    Haberl, M.L.5    Johnson, C.6
  • 4
    • 0026514674 scopus 로고
    • Insertion and excision of Bacteroides conjugative chromosomal elements
    • Bedzyk, L. A., N. B. Shoemaker, K. E. Young, and A. A. Salyers. 1992 Insertion and excision of Bacteroides conjugative chromosomal elements. J. Bacteriol. 174:166-172.
    • (1992) J. Bacteriol. , vol.174 , pp. 166-172
    • Bedzyk, L.A.1    Shoemaker, N.B.2    Young, K.E.3    Salyers, A.A.4
  • 5
    • 0031977363 scopus 로고    scopus 로고
    • The 102-kilobase unstable region of Yersinia pestis comprises a high-pathogenicity island linked to a pigmentation segment which undergoes internal rearrangement
    • Buchrieser, C., M. Prentice, and E. Carniel. 1998. The 102-kilobase unstable region of Yersinia pestis comprises a high-pathogenicity island linked to a pigmentation segment which undergoes internal rearrangement. J. Bacteriol. 180:2321-2329.
    • (1998) J. Bacteriol. , vol.180 , pp. 2321-2329
    • Buchrieser, C.1    Prentice, M.2    Carniel, E.3
  • 6
    • 0002523637 scopus 로고
    • The conjugative transposons of gram-positive bacteria
    • D. B. Clewell (ed.), Plenum Press, New York, N.Y.
    • Clewell, D. B., and S. E. Flannagan. 1993. The conjugative transposons of gram-positive bacteria, p. 369-393. In D. B. Clewell (ed.), Bacterial conjugation. Plenum Press, New York, N.Y.
    • (1993) Bacterial Conjugation , pp. 369-393
    • Clewell, D.B.1    Flannagan, S.E.2
  • 7
    • 0016156623 scopus 로고
    • Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad
    • Dorn, E., M. Hellwig, W. Reineke, and H.-J. Knackmuss. 1974. Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad. Arch. Microbiol. 99:61-70.
    • (1974) Arch. Microbiol. , vol.99 , pp. 61-70
    • Dorn, E.1    Hellwig, M.2    Reineke, W.3    Knackmuss, H.-J.4
  • 8
    • 0026766452 scopus 로고
    • Nucleotide sequencing and transcriptional mapping of the genes encoding biphenyl dioxygenase, a multi-component polychlorinated biphenyl-degrading enzyme in Pseudomonas strain LB400
    • Erickson, B. D., and F. J. Mondello. 1992. Nucleotide sequencing and transcriptional mapping of the genes encoding biphenyl dioxygenase, a multi-component polychlorinated biphenyl-degrading enzyme in Pseudomonas strain LB400. J. Bacteriol. 174:2903-2912.
    • (1992) J. Bacteriol. , vol.174 , pp. 2903-2912
    • Erickson, B.D.1    Mondello, F.J.2
  • 9
    • 0019415205 scopus 로고
    • Evidence for a chromosome-borne resistance transposon (Tn916) in Streptococcus faecalis that is capable of "conjugal" transfer in the absence of a conjugative plasmid
    • Franke, A. E., and D. B. Clewell. 1981. Evidence for a chromosome-borne resistance transposon (Tn916) in Streptococcus faecalis that is capable of "conjugal" transfer in the absence of a conjugative plasmid. J. Bacteriol. 145:494-502.
    • (1981) J. Bacteriol. , vol.145 , pp. 494-502
    • Franke, A.E.1    Clewell, D.B.2
  • 10
    • 0023374169 scopus 로고
    • Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradation
    • Frantz, B., and A. M. Chakrabarty. 1987. Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradation. Proc. Natl. Acad. Sci. USA 84:4460-4464.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 4460-4464
    • Frantz, B.1    Chakrabarty, A.M.2
  • 11
    • 84921184826 scopus 로고
    • Microbial degradation of polychlorinated biphenyls
    • A. M. Chakrabarty (ed.), CRC Press, Inc., Boca Raton, Fla.
    • Furukawa, K. 1982. Microbial degradation of polychlorinated biphenyls, p. 33-57. In A. M. Chakrabarty (ed.), Biodegradation and detoxification of environmental pollutants CRC Press, Inc., Boca Raton, Fla.
    • (1982) Biodegradation and Detoxification of Environmental Pollutants , pp. 33-57
    • Furukawa, K.1
  • 12
    • 0028672055 scopus 로고
    • Molecular genetics and evolutionary relationship of PCB-degrading bacteria
    • Furukawa, K. 1994. Molecular genetics and evolutionary relationship of PCB-degrading bacteria. Biodegradation 5:289-300.
    • (1994) Biodegradation , vol.5 , pp. 289-300
    • Furukawa, K.1
  • 13
    • 0024468821 scopus 로고
    • Molecular relationship of chromosomal genes encoding biphenyl/polychlorinated biphenyl catabolism: Some soil bacteria possess a highly conserved bph operon
    • Furukawa, K., N. Hayase, K. Taira, and N. Tomizuka. 1989. Molecular relationship of chromosomal genes encoding biphenyl/polychlorinated biphenyl catabolism: some soil bacteria possess a highly conserved bph operon. J. Bacteriol. 171:5467-5472.
    • (1989) J. Bacteriol. , vol.171 , pp. 5467-5472
    • Furukawa, K.1    Hayase, N.2    Taira, K.3    Tomizuka, N.4
  • 14
    • 0022617112 scopus 로고
    • Cloning of gene cluster encoding biphenyl and chlorobiphenyl degradation in Pseudomonas pseudo alcaligenes
    • Furukawa, K., and T. Miyazaki. 1986. Cloning of gene cluster encoding biphenyl and chlorobiphenyl degradation in Pseudomonas pseudo alcaligenes. J. Bacteriol. 166:392-398.
    • (1986) J. Bacteriol. , vol.166 , pp. 392-398
    • Furukawa, K.1    Miyazaki, T.2
  • 15
    • 0020462705 scopus 로고
    • A transposon in Streptococcus faecalis with fertility properties
    • Gawron-Burke, C., and D. B. Clewell. 1982. A transposon in Streptococcus faecalis with fertility properties. Nature 300:281-284.
    • (1982) Nature , vol.300 , pp. 281-284
    • Gawron-Burke, C.1    Clewell, D.B.2
  • 16
    • 0025020696 scopus 로고
    • Pseudomonas putida KF715 bphABCD operon encoding biphenyl and polychlorinated biphenyl degradation: Cloning, analysis, and expression in soil bacteria
    • Hayase, N., K. Taira, and K. Furukawa. 1990. Pseudomonas putida KF715 bphABCD operon encoding biphenyl and polychlorinated biphenyl degradation: cloning, analysis, and expression in soil bacteria. J. Bacteriol. 172:1160-1164.
    • (1990) J. Bacteriol. , vol.172 , pp. 1160-1164
    • Hayase, N.1    Taira, K.2    Furukawa, K.3
  • 17
    • 0028287911 scopus 로고
    • The biphenyl/polychlorinated biphenyl-degradation locus (bph) of Pseudomonas sp. LB400 encodes four additional metabolic enzymes
    • Hofer, B., S. Backhaus, and K. N. Timmis. 1994. The biphenyl/polychlorinated biphenyl-degradation locus (bph) of Pseudomonas sp. LB400 encodes four additional metabolic enzymes. Gene 144:9-16.
    • (1994) Gene , vol.144 , pp. 9-16
    • Hofer, B.1    Backhaus, S.2    Timmis, K.N.3
  • 18
    • 0024594798 scopus 로고
    • Characteristics and restriction analysis of the 4-chlorinated biphenyl/polychlorinated biphenyl catabolic plasmid pSS50
    • Hooper, S. W., T. C. Dockendorff, and G. S. Sayler. 1989. Characteristics and restriction analysis of the 4-chlorinated biphenyl/polychlorinated biphenyl catabolic plasmid pSS50. Appl. Environ. Microbiol. 55:1286-1288.
    • (1989) Appl. Environ. Microbiol. , vol.55 , pp. 1286-1288
    • Hooper, S.W.1    Dockendorff, T.C.2    Sayler, G.S.3
  • 19
    • 0030998438 scopus 로고    scopus 로고
    • Functional analyses of a variety of chimeric dioxygenases constructed from two biphenyl dioxygenases that are similar structurally but different functionally
    • Kimura, N., A. Nishi, A. Goto, and K. Furukawa. 1997. Functional analyses of a variety of chimeric dioxygenases constructed from two biphenyl dioxygenases that are similar structurally but different functionally. J. Bacteriol. 179:3936-3943.
    • (1997) J. Bacteriol. , vol.179 , pp. 3936-3943
    • Kimura, N.1    Nishi, A.2    Goto, A.3    Furukawa, K.4
  • 20
    • 0029044939 scopus 로고
    • Cloning of salicylate hydroxylase gene and catechol 2,3-dioxygenase gene and sequencing of an intergenic sequence between the two genes of Pseudomonas putida KF715
    • Lee, J., K. R. Min, Y.-C. Kim, C.-K. Kim, J.-Y. Lim, H. Hoon, K.-H. Min, K.-S. Lee, and Y. Kim. 1995. Cloning of salicylate hydroxylase gene and catechol 2,3-dioxygenase gene and sequencing of an intergenic sequence between the two genes of Pseudomonas putida KF715. Biochem. Biophys. Res. Commun. 211:382-388.
    • (1995) Biochem. Biophys. Res. Commun. , vol.211 , pp. 382-388
    • Lee, J.1    Min, K.R.2    Kim, Y.-C.3    Kim, C.-K.4    Lim, J.-Y.5    Hoon, H.6    Min, K.-H.7    Lee, K.-S.8    Kim, Y.9
  • 21
    • 0030034941 scopus 로고    scopus 로고
    • Nucleotide sequence of salicylate hydroxylase genes and its 5′-flanking region of Pseudomonas putida KF715
    • Lee, J., J. Oh, K. R. Min, and Y. Kim. 1996. Nucleotide sequence of salicylate hydroxylase genes and its 5′-flanking region of Pseudomonas putida KF715. Biochem. Biophys. Res. Commun. 218:544-548.
    • (1996) Biochem. Biophys. Res. Commun. , vol.218 , pp. 544-548
    • Lee, J.1    Oh, J.2    Min, K.R.3    Kim, Y.4
  • 22
    • 0028055189 scopus 로고
    • Recombination of the bph (biphenyl) genes from pWW100 and their deletion during growth on benzoate
    • Lloyd-Jones, G., C. De Jong, R. C. Ogden, W. A. Duetz, and P. A. Williams. 1994. Recombination of the bph (biphenyl) genes from pWW100 and their deletion during growth on benzoate. Appl. Environ. Microbiol. 68:691-696.
    • (1994) Appl. Environ. Microbiol. , vol.68 , pp. 691-696
    • Lloyd-Jones, G.1    De Jong, C.2    Ogden, R.C.3    Duetz, W.A.4    Williams, P.A.5
  • 23
    • 0031018281 scopus 로고    scopus 로고
    • Organization of the bph gene cluster of transposon Tn4371, encoding enzymes for the degradation of biphenyl and 4-chlorobiphenyl compounds
    • Merlin, C., D. Springael, M. Mergeay, and A. Toussaint. 1997. Organization of the bph gene cluster of transposon Tn4371, encoding enzymes for the degradation of biphenyl and 4-chlorobiphenyl compounds. Mol. Gen. Genet. 253:499-506.
    • (1997) Mol. Gen. Genet. , vol.253 , pp. 499-506
    • Merlin, C.1    Springael, D.2    Mergeay, M.3    Toussaint, A.4
  • 24
    • 0032905533 scopus 로고    scopus 로고
    • Tn4371: A modular structure encoding a phage-like integrase, a Pseudomonas-like catabolic pathway, and RP4-like transfer function
    • Merlin, C., D. Springael, and A. Toussaint. 1999. Tn4371: a modular structure encoding a phage-like integrase, a Pseudomonas-like catabolic pathway, and RP4-like transfer function. Plasmid 41:40-54.
    • (1999) Plasmid , vol.41 , pp. 40-54
    • Merlin, C.1    Springael, D.2    Toussaint, A.3
  • 26
    • 0029804961 scopus 로고    scopus 로고
    • Cloning, sequencing, and expression of isopropylbenzene degradation genes from Pseudomonas sp. strain JR1: Identification of isopropylbenzene dioxygenase that mediates trichloroethene oxidation
    • Pflugmacher, U., B. Averhoff, and G. Gottschalk. 1996. Cloning, sequencing, and expression of isopropylbenzene degradation genes from Pseudomonas sp. strain JR1: identification of isopropylbenzene dioxygenase that mediates trichloroethene oxidation. Appl. Environ. Microbiol. 62:3967-3977.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 3967-3977
    • Pflugmacher, U.1    Averhoff, B.2    Gottschalk, G.3
  • 27
    • 0031751325 scopus 로고    scopus 로고
    • Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. strain B13
    • Ravatn, R., S. Studer, D. Springael, A. J. B. Zehnder, and J. R. van der Meer. 1998. Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. strain B13. J. Bacteriol. 180:4360-4369.
    • (1998) J. Bacteriol. , vol.180 , pp. 4360-4369
    • Ravatn, R.1    Studer, S.2    Springael, D.3    Zehnder, A.J.B.4    Van Der Meer, J.R.5
  • 28
    • 0031740749 scopus 로고    scopus 로고
    • Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. strain B13
    • Ravatn, R., S. Studer, A. J. B. Zehnder, and J. R. van der Meer. 1998 Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. strain B13. J. Bacteriol. 180:5505-5514.
    • (1998) J. Bacteriol. , vol.180 , pp. 5505-5514
    • Ravatn, R.1    Studer, S.2    Zehnder, A.J.B.3    Van Der Meer, J.R.4
  • 29
    • 0028889420 scopus 로고
    • Conjugative transposons: An unusual and divers set of integrated gene transfer elements
    • Salyers, A. A., N. B. Shoemaker, A. M. Stevens, and L.-Y. Li. 1995. Conjugative transposons: an unusual and divers set of integrated gene transfer elements. Microbiol. Rev. 59:579-590.
    • (1995) Microbiol. Rev. , vol.59 , pp. 579-590
    • Salyers, A.A.1    Shoemaker, N.B.2    Stevens, A.M.3    Li, L.-Y.4
  • 30
    • 0026782604 scopus 로고
    • Sex and the single circle: Conjugative transposon
    • Scott, J. R. 1992. Sex and the single circle: conjugative transposon. J. Bacteriol. 174:6005-6010.
    • (1992) J. Bacteriol. , vol.174 , pp. 6005-6010
    • Scott, J.R.1
  • 31
    • 0025366307 scopus 로고
    • A cryptic 65-kilobase-pair transposonlike clement isolated from Racteroides uniforms has homology with Bacteroides conjugal tetracycline resistance elements
    • Shoemaker, N. B., and A. A. Salyer. 1990. A cryptic 65-kilobase-pair transposonlike clement isolated from Racteroides uniforms has homology with Bacteroides conjugal tetracycline resistance elements. J. Bacteriol. 172:1694-1702.
    • (1990) J. Bacteriol. , vol.172 , pp. 1694-1702
    • Shoemaker, N.B.1    Salyer, A.A.2
  • 32
    • 0018861458 scopus 로고
    • DNase resistant transfer of chromosomal cat and tet insertions by filter mating in pneumococcus
    • Shoemaker, N. B., M. D. Smith, and W. R. Guild. 1980. DNase resistant transfer of chromosomal cat and tet insertions by filter mating in pneumococcus. Plasmid 3:80-87.
    • (1980) Plasmid , vol.3 , pp. 80-87
    • Shoemaker, N.B.1    Smith, M.D.2    Guild, W.R.3
  • 33
    • 0021027842 scopus 로고
    • A broad host range mobilization system for in vivo genetic engineering: Transposon mutagenesis in gramnegative bacteria
    • Simon, R., U. Priefer, and A. Pühler. 1983. A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in gramnegative bacteria. Bio/Technology 1:784-791.
    • (1983) Bio/Technology , vol.1 , pp. 784-791
    • Simon, R.1    Priefer, U.2    Pühler, A.3
  • 34
    • 0027404658 scopus 로고
    • Identification of a catabolic transposon, Tn4371, carrying biphenyl and 4-chlorobiphenyl degradation genes in Alcaligenes eutrophus A5
    • Springael, D., S. Kreps, and M. Mergeay. 1993. Identification of a catabolic transposon, Tn4371, carrying biphenyl and 4-chlorobiphenyl degradation genes in Alcaligenes eutrophus A5. J. Bacteriol. 175:1674-1681.
    • (1993) J. Bacteriol. , vol.175 , pp. 1674-1681
    • Springael, D.1    Kreps, S.2    Mergeay, M.3
  • 35
    • 0026640186 scopus 로고
    • Analysis of bph operon from the polychlorinated biphenyl-degrading strain of Pseudomonas pseudoalcaligenes KF707
    • Taira, K., J. Hirose, S. Hayashida, and K. Furukawa. 1992. Analysis of bph operon from the polychlorinated biphenyl-degrading strain of Pseudomonas pseudoalcaligenes KF707. J. Biol. Chem. 267:4844-4853.
    • (1992) J. Biol. Chem. , vol.267 , pp. 4844-4853
    • Taira, K.1    Hirose, J.2    Hayashida, S.3    Furukawa, K.4
  • 37
    • 0002525613 scopus 로고    scopus 로고
    • A history of PCB biodegradation
    • R. L. Crawford and D. L. Crawford (ed.), Cambridge University Press, New York, N.Y.
    • Unterman, R. 1996. A history of PCB biodegradation, p. 209-253. In R. L. Crawford and D. L. Crawford (ed.), Bioremediation: principles and applications. Cambridge University Press, New York, N.Y.
    • (1996) Bioremediation: Principles and Applications , pp. 209-253
    • Unterman, R.1
  • 39
    • 0031779621 scopus 로고    scopus 로고
    • Two nearly identical aromatic compound hydrolase genes in a strong polychlorinated biphenyl degrader, Rhodococces sp. strain RHA1
    • Yamada, A., H. Kishi, K. Sugiyama, T. Hatta, K. Nakamura, E. Masai, and M. Fukuda. 1998. Two nearly identical aromatic compound hydrolase genes in a strong polychlorinated biphenyl degrader, Rhodococces sp. strain RHA1. Appl. Environ. Microbiol. 64:2006-2012.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2006-2012
    • Yamada, A.1    Kishi, H.2    Sugiyama, K.3    Hatta, T.4    Nakamura, K.5    Masai, E.6    Fukuda, M.7
  • 40
    • 0021943518 scopus 로고
    • Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
    • Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
    • (1985) Gene , vol.33 , pp. 103-119
    • Yanisch-Perron, C.1    Vieira, J.2    Messing, J.3


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