Genome sequence of benzo(a)pyrene-degrading bacterium Novosphingobium pentaromativorans US6-1

Journal of Bacteriology

Volumn 194, Issue 4, 2012, Pages 907-

  Luo, Yuan Rong ^a   Kang, Sung Gyun ^a   Kim, Sang Jin ^a   Kim, Mi Ree ^a   Li, Nan ^a   Lee, Jung Hyun ^a   Kwon, Kae Kyoung ^a  

^a Korea Research Institute of Ships and Ocean Engineering   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BENZO[A]PYRENE; POLYCYCLIC AROMATIC HYDROCARBON; RIBOSOME RNA; TRANSFER RNA;

ARTICLE; BACTERIAL STRAIN; DEGRADATION; GENE SEQUENCE; GENETIC CODE; GRAM NEGATIVE BACTERIUM; NONHUMAN; NOVOSPHINGOBIUM PENTAROMATIVORANS US6 1; NUCLEOTIDE SEQUENCE; OPERON; PLASMID; PRIORITY JOURNAL; SEQUENCE HOMOLOGY;

BASE SEQUENCE; BIODEGRADATION, ENVIRONMENTAL; GENES, BACTERIAL; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; PLASMIDS; POLYCYCLIC HYDROCARBONS, AROMATIC; SEQUENCE ANALYSIS, DNA; SPHINGOMONADACEAE;

BACTERIA (MICROORGANISMS); NOVOSPHINGOBIUM PENTAROMATIVORANS;

EID: 84863174887     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.06476-11     Document Type: Article

References (8)

1. Aziz RK, et al. 2008. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75.
2. Chadhain SM, Moritz EM, Kim E, Zylstra GJ. 2007. Identification, cloning, and characterization of a multicomponent biphenyl dioxygenase from Sphingobium yanoikuyae B1. J. Ind. Microbiol. Biotechnol. 34:605-613.
3. Delcher AL, Bratke KA, Powers EC, Salzberg SL. 2007. Identifying bacterial genes and endosymbiontDNAwith Glimmer. Bioinformatics 23:673-679.
4. Lagesen K, et al. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
5. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transferRNAgenes in genomic sequence. Nucleic Acids Res. 25:955-964.
6. Pinyakong O, Habe H, Yoshida T, Nojiri H, Omori T. 2003. Identification of three novel salicylate 1-hydroxylases involved in the phenanthrene degradation of Sphingobium sp. train P2. Biochem. Biophys. Res. Commun. 301:350-357.
7. Romine MF, et al. 1999. Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199. J. Bacteriol. 181:1585-1602.
8. Sohn JH, Kwon KK, Kang JH, Jung HB, Kim SJ. 2004. Novosphingobium pentaromativorans sp. ov., a high-molecular-mass polycyclic aromatic hydrocarbon-degrading bacterium isolated from estuarine sediment. nInt. J. Syst. Evol. Microbiol. 54:1483-1487.