The P-7 incompatibility group plasmids responsible for biodegradation of naphthalene and salicylate in fluorescent pseudomonads

Mikrobiologiya

Volumn 74, Issue 3, 2005, Pages 342-348

  Izmalkova, T Yu ^a   Sazonova, O I ^b   Sokolov, S L ^a   Kosheleva, I A ^a,b   Boronin, A M ^a,b  

^a SKRYABIN INSTITUTE OF BIOCHEMISTRY AND PHYSIOLOGY OF MICROORGANISMS   (Russian Federation)

^b PUSHCHINO STATE UNIVERSITY   (Russian Federation)

Author keywords

Biodegradation; Fluorescent pseudomonads; IncP 7 plasmids; Naphthalene catabolism genes

Indexed keywords

PSEUDOMONAS FLUORESCENS; PSEUDOMONAS FLUORESCENS GROUP;

MIXED FUNCTION OXIDASE; NAPHTHALENE; NAPHTHALENE DERIVATIVE; SALICYLIC ACID 5 HYDROXYLASE; SALICYLIC ACID 5-HYDROXYLASE; SALICYLIC ACID DERIVATIVE;

AGAR GEL ELECTROPHORESIS; ARTICLE; BIOREMEDIATION; CLUSTER ANALYSIS; GENETICS; METABOLISM; PLASMID; PSEUDOMONAS FLUORESCENS;

BIODEGRADATION, ENVIRONMENTAL; CLUSTER ANALYSIS; ELECTROPHORESIS, AGAR GEL; MIXED FUNCTION OXYGENASES; NAPHTHALENES; PLASMIDS; PSEUDOMONAS FLUORESCENS; SALICYLATES;

EID: 26944490371     PISSN: 00263656     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (18)

1. Izmalkova T.Yu., Mavrodi D.V., Sokolov S.L., Kosheleva I.A., Boronin A.M. Molecular classification of IncP-9 naphthalene degradation plasmids (in press).
2. Sambrook J., Fritsch E.F., Maniatis T. Molecular cloning: a laboratory manual. 2nd ed. Cold Spring Harbor: Cold Spring Harbor Laboratory Press, 1989.
3. Evans C.G.T., Herbert D., Tempest D.W. The continiuous cultivation of microorganisms: II. Construction of a chemostat // Methods Microbiol. 1970. V. 2. P. 277-327.
4. Shot potocols in molecular biology / Eds. Ausubel F.M. et al. New York: John Wiley and Sons, 1999. P. 1056.
5. Weisburg W.G., Barnes S.M., Pelletier D.A., Lane D.J. 16S ribosomal DNA amplification for phylogenetic study // J. Bacteriol. 1991. V. 73. P. 697-703.
6. Greated A., Thomas C.M. A pair of PCR primers for IncP-9 plasmids // Microbiology (UK). 1999. V. 145. P. 3003-3004.
7. Ferrero M., Llobet-Brossa E., Lalucat J., Garcia-Valdes E., Rosselo-Mora R., Bosch R. Coexistence of two distinct copies of naphthalene degradation genes in Pseudomonas strains isolated from the western mediterranean region // Appl. Environ. Microbiol. 2002. V. 68. P. 957-962.
8. Wilkstrom P., Wilklund A., Anderson A.C., Forman M. DNA recovery and PCR quantification of catechol-2,3-dioxygenase genes from different soil types // J. Biotechnol. 1996. V. 52. P. 107-120.
9. Maeda K., Nojiri H., Shintani M., Yoshida T., Habe H., Omori T. Complete nucleotide sequence of carbazole/dioxin degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676 // J. Mol. Biol. 2003. V. 326. P. 21-33.
10. Bergey's manual of systematic bacteriology / Eds. Krieg N.J., Holt J.G. Baltimore: Williams and Wilkins, 1984.
11. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool // J. Mol. Biol. 1990. V. 215. P. 403-410.
12. Van de Peer Y., De Wachter R. TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment // Comput. Applic. Biosci. 1994. V. 10. P. 569-570.
13. Phenotypic traits conferred by plasmids // The horizontal gene pool / Eds. Top E.M. et al. Amsterdam: Harwood Academic Publishers, 2000. P. 249-285.
14. Fuenmayor S.L., Wild M., Boyles A.L., Williams P.A. A gene cluster encoding steps in conversion of naphthalene to gentisate in Pseudomonas sp. strain U2 // J. Bacteriol. 1998. V. 180. P. 2522-2530.
15. Hickey W.J., Sabat G., Yuroff A.S., Arment A.R., Perez-Lesher J. Cloning, nucleotide sequencing, and functional analysis of a novel, mobile cluster of biodegradation genes from Pseudomonas aeruginosa JB2 // Appl. Environ. Microbiol. 2001. V. 67. P. 4603-4609.
16. Zhou N.-Yi, Al-Dulayymi J., Baird M.S., Williams P.A. Salicylate 5-hydroxylase from Ralstonia sp. strain U2: a monooxygenase with close relationships to and shared electron transport proteins with naphthalene dioxygenase // J. Bacteriol. 2002. V. 184. P. 1547-1555.