-
1
-
-
2942512907
-
Detection and characterization of conjugative degradative plasmids in xenobiotic-degrading Sphingomonas strains
-
Basta T, Keck A, Klein J, Stolz A (2004) Detection and characterization of conjugative degradative plasmids in xenobiotic-degrading Sphingomonas strains. J Bacteriol 186:3862-3872
-
(2004)
J Bacteriol
, vol.186
, pp. 3862-3872
-
-
Basta, T.1
Keck, A.2
Klein, J.3
Stolz, A.4
-
2
-
-
2242469357
-
Halide-stabilizing residues of haloalkane dehalogenases studied by quantum mechanic calculations and site-directed mutagenesis
-
Bohac M, Nagata Y, Prokop Z, Prokop M, Monincova M, Tsuda M, Koca J, Damborsky J (2002) Halide-stabilizing residues of haloalkane dehalogenases studied by quantum mechanic calculations and site-directed mutagenesis. Biochemistry 41:14272-14280
-
(2002)
Biochemistry
, vol.41
, pp. 14272-14280
-
-
Bohac, M.1
Nagata, Y.2
Prokop, Z.3
Prokop, M.4
Monincova, M.5
Tsuda, M.6
Koca, J.7
Damborsky, J.8
-
3
-
-
23944446592
-
16S rDNA phylogeny and distribution of lin genes in novel hexachlorocyclohexane-degrading Sphingomonas strains
-
Boltner D, Moreno-Morillas S, Ramos JL (2005) 16S rDNA phylogeny and distribution of lin genes in novel hexachlorocyclohexane-degrading Sphingomonas strains. Environ Microbiol 7:1329-1338
-
(2005)
Environ Microbiol
, vol.7
, pp. 1329-1338
-
-
Boltner, D.1
Moreno-Morillas, S.2
Ramos, J.L.3
-
4
-
-
33744547327
-
Development of metagenomic DNA shuffling for the construction of a xenobiotic gene
-
Boubakri H, Beuf M, Simonet P, Vogel TM (2006) Development of metagenomic DNA shuffling for the construction of a xenobiotic gene. Gene 375:87-94
-
(2006)
Gene
, vol.375
, pp. 87-94
-
-
Boubakri, H.1
Beuf, M.2
Simonet, P.3
Vogel, T.M.4
-
5
-
-
0036718377
-
Organization and regulation of pentachlorophenol-degrading genes in Sphingobium chlorophenolicum ATCC 39723
-
Cai M, Xun L (2002) Organization and regulation of pentachlorophenol- degrading genes in Sphingobium chlorophenolicum ATCC 39723. J Bacteriol 184:4672-4680
-
(2002)
J Bacteriol
, vol.184
, pp. 4672-4680
-
-
Cai, M.1
Xun, L.2
-
6
-
-
33645222793
-
Plasmid-encoded gamma-hexachlorocyclohexane degradation genes and insertion sequences in Sphingobium francense (ex-Sphingomonas paucimobilis Sp+)
-
Ceremonie H, Boubakri H, Mavingui P, Simonet P, Vogel TM (2006) Plasmid-encoded gamma-hexachlorocyclohexane degradation genes and insertion sequences in Sphingobium francense (ex-Sphingomonas paucimobilis Sp+). FEMS Microbiol Lett 257:243-252
-
(2006)
FEMS Microbiol Lett
, vol.257
, pp. 243-252
-
-
Ceremonie, H.1
Boubakri, H.2
Mavingui, P.3
Simonet, P.4
Vogel, T.M.5
-
7
-
-
0346101759
-
Modification of activity and specificity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 by engineering of its entrance tunnel
-
Chaloupkova R, Sykorova J, Prokop Z, Jesenska A, Monincova M, Pavlova M, Tsuda M, Nagata Y, Damborsky J (2003) Modification of activity and specificity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 by engineering of its entrance tunnel. J Biol Chem 278:52622-52628
-
(2003)
J Biol Chem
, vol.278
, pp. 52622-52628
-
-
Chaloupkova, R.1
Sykorova, J.2
Prokop, Z.3
Jesenska, A.4
Monincova, M.5
Pavlova, M.6
Tsuda, M.7
Nagata, Y.8
Damborsky, J.9
-
8
-
-
0035180563
-
Structure-specificity relationships for haloalkane dehalogenases
-
Damborsky J, Rorije E, Jesenska A, Nagata Y, Klopman G, Peijnenburg WJGM (2001) Structure-specificity relationships for haloalkane dehalogenases. Environ Toxicol Chem 20:2681-2689
-
(2001)
Environ Toxicol Chem
, vol.20
, pp. 2681-2689
-
-
Damborsky, J.1
Rorije, E.2
Jesenska, A.3
Nagata, Y.4
Klopman, G.5
Wjgm, P.6
-
9
-
-
1842454814
-
Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis: Evidence for horizontal gene transfer
-
Dogra C, Raina V, Pal R, Suar M, Lal S, Gartemann KH, Holliger C, van der Meer JR, Lal R (2004) Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis: evidence for horizontal gene transfer. J Bacteriol 186:2225-2235
-
(2004)
J Bacteriol
, vol.186
, pp. 2225-2235
-
-
Dogra, C.1
Raina, V.2
Pal, R.3
Suar, M.4
Lal, S.5
Gartemann, K.H.6
Holliger, C.7
Van Der Meer, J.R.8
Lal, R.9
-
10
-
-
0030007094
-
Large-scale search for genes on which positive selection may operate
-
Endo T, Ikeo K, Gojobori T (1996) Large-scale search for genes on which positive selection may operate. Mol Biol Evol 13:685-690
-
(1996)
Mol Biol Evol
, vol.13
, pp. 685-690
-
-
Endo, T.1
Ikeo, K.2
Gojobori, T.3
-
11
-
-
13244265506
-
Identification and characterization of genes involved in the downstream degradation pathway of γ-hexachlorocyclohexane in Sphingomonas paucimobilis UT26
-
Endo R, Kamakura M, Miyauchi K, Fukuda M, Ohtsubo Y, Tsuda M, Nagata Y (2005) Identification and characterization of genes involved in the downstream degradation pathway of γ-hexachlorocyclohexane in Sphingomonas paucimobilis UT26. J Bacteriol 187:847-853
-
(2005)
J Bacteriol
, vol.187
, pp. 847-853
-
-
Endo, R.1
Kamakura, M.2
Miyauchi, K.3
Fukuda, M.4
Ohtsubo, Y.5
Tsuda, M.6
Nagata, Y.7
-
12
-
-
33646149153
-
Growth inhibition by metabolites of γ-hexachlorocyclohexane in Sphingobium japonicum UT26
-
Endo R, Ohtsubo Y, Tsuda M, Nagata Y (2006) Growth inhibition by metabolites of γ-hexachlorocyclohexane in Sphingobium japonicum UT26. Biosci Biotechnol Biochem 70:1029-1032
-
(2006)
Biosci Biotechnol Biochem
, vol.70
, pp. 1029-1032
-
-
Endo, R.1
Ohtsubo, Y.2
Tsuda, M.3
Nagata, Y.4
-
13
-
-
34248336571
-
Identification and characterization of genes encoding a putative ABC-type transporter essential for the utilization of γ-hexachlorocyclohexane in Sphingobium japonicum UT26
-
Endo R, Ohtsubo Y, Tsuda M, Nagata Y (2007) Identification and characterization of genes encoding a putative ABC-type transporter essential for the utilization of γ-hexachlorocyclohexane in Sphingobium japonicum UT26. J Bacteriol 189:3712-3720
-
(2007)
J Bacteriol
, vol.189
, pp. 3712-3720
-
-
Endo, R.1
Ohtsubo, Y.2
Tsuda, M.3
Nagata, Y.4
-
15
-
-
0033024132
-
Identification of the catalytic triad in the haloalkane dehalogenase from Sphingomonas paucimobilis UT26
-
Hynkova K, Nagata Y, Takagi M, Damborsky J (1999) Identification of the catalytic triad in the haloalkane dehalogenase from Sphingomonas paucimobilis UT26. FEBS Lett 446:177-181
-
(1999)
FEBS Lett
, vol.446
, pp. 177-181
-
-
Hynkova, K.1
Nagata, Y.2
Takagi, M.3
Damborsky, J.4
-
16
-
-
0000396578
-
Dehydrochlorination of γ-Hexachlorocyclohexane (γ-BHC) by γ-BHC-assimilating Pseudomonas paucimobilis
-
Imai R, Nagata Y, Senoo K, Wada H, Fukuda M, Takagi M, Yano K (1989) Dehydrochlorination of γ-Hexachlorocyclohexane (γ-BHC) by γ-BHC-assimilating Pseudomonas paucimobilis. Agric Biol Chem 53:2015-2017
-
(1989)
Agric Biol Chem
, vol.53
, pp. 2015-2017
-
-
Imai, R.1
Nagata, Y.2
Senoo, K.3
Wada, H.4
Fukuda, M.5
Takagi, M.6
Yano, K.7
-
17
-
-
0025786069
-
Molecular cloning of a Pseudomonas paucimobilis gene encoding a 17-kilodalton polypeptide that eliminates HCl molecules from γ-Hexachlorocyclohexanes
-
Imai R, Nagata Y, Fukuda M, Takagi M, Yano K (1991) Molecular cloning of a Pseudomonas paucimobilis gene encoding a 17-kilodalton polypeptide that eliminates HCl molecules from γ-Hexachlorocyclohexane. J Bacteriol 173:6811-6819
-
(1991)
J Bacteriol
, vol.173
, pp. 6811-6819
-
-
Imai, R.1
Nagata, Y.2
Fukuda, M.3
Takagi, M.4
Yano, K.5
-
18
-
-
34548329536
-
Degradation of β-hexachlorocyclohexane by haloalkane dehalogenase LinB from γ-hexachlorocyclohexane-utilizing bacterium Sphingobium sp. MI1205
-
(in press) DOI 10.1007/s00203-007-0251-8
-
Ito M, Prokop Z, Klvana M, Ohtsubo Y, Tsuda M, Damborsky J, Nagata Y (2007) Degradation of β-hexachlorocyclohexane by haloalkane dehalogenase LinB from γ-hexachlorocyclohexane-utilizing bacterium Sphingobium sp. MI1205. Arch Microbiol (in press) DOI 10.1007/s00203-007-0251-8
-
(2007)
Arch Microbiol
-
-
Ito, M.1
Prokop, Z.2
Klvana, M.3
Ohtsubo, Y.4
Tsuda, M.5
Damborsky, J.6
Nagata, Y.7
-
19
-
-
0027336232
-
Distribution of persistent organochlorines in the Oceanic air and surface seawater and the role of ocean on their global transport and fate
-
Iwata H, Tanabe S, Sakai N, Tatsukawa R (1993) Distribution of persistent organochlorines in the Oceanic air and surface seawater and the role of ocean on their global transport and fate. Environ Sci Technol 27:1080-1098
-
(1993)
Environ Sci Technol
, vol.27
, pp. 1080-1098
-
-
Iwata, H.1
Tanabe, S.2
Sakai, N.3
Tatsukawa, R.4
-
20
-
-
1842479420
-
Evolving haloalkane dehalogenases
-
Janssen DB (2004) Evolving haloalkane dehalogenases. Curr Opin Chem Biol 8:150-159
-
(2004)
Curr Opin Chem Biol
, vol.8
, pp. 150-159
-
-
Janssen, D.B.1
-
21
-
-
28644444340
-
Bacterial degradation of xenobiotic compounds: Evolution and distribution of novel enzyme activities
-
Janssen DB, Dinkla IJ, Poelarends GJ, Terpstra P (2005) Bacterial degradation of xenobiotic compounds: evolution and distribution of novel enzyme activities. Environ Microbiol 7:1868-1882
-
(2005)
Environ Microbiol
, vol.7
, pp. 1868-1882
-
-
Janssen, D.B.1
Dinkla, I.J.2
Poelarends, G.J.3
Terpstra, P.4
-
22
-
-
0343986273
-
Dehalogenation of haloalkanes by Mycobacterium tuberculosis H37Rv and other mycobacteria
-
Jesenska A, Sedlacek I, Damborsky J (2000) Dehalogenation of haloalkanes by Mycobacterium tuberculosis H37Rv and other mycobacteria. Appl Environ Microbiol 66:219-222
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 219-222
-
-
Jesenska, A.1
Sedlacek, I.2
Damborsky, J.3
-
23
-
-
0036325189
-
Cloning and expression of the haloalkane dehalogenase gene dhmA from Mycobacterium avium N85 and preliminary characterization of DhmA
-
Jesenska A, Bartos M, Czernekova V, Rychlik I, Pavlik I, Damborsky J (2002) Cloning and expression of the haloalkane dehalogenase gene dhmA from Mycobacterium avium N85 and preliminary characterization of DhmA. Appl Environ Microbiol 68:3724-3730
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 3724-3730
-
-
Jesenska, A.1
Bartos, M.2
Czernekova, V.3
Rychlik, I.4
Pavlik, I.5
Damborsky, J.6
-
24
-
-
32044445515
-
Cloning, biochemical properties, and distribution of mycobacterial haloalkane dehalogenases
-
Jesenska A, Pavlova M, Strouhal M, Chaloupkova R, Tesinska I, Monincova M, Prokop Z, Bartos M, Pavlik I, Rychlik I et al (2005) Cloning, biochemical properties, and distribution of mycobacterial haloalkane dehalogenases. Appl Environ Microbiol 71:6736-6745
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 6736-6745
-
-
Jesenska, A.1
Pavlova, M.2
Strouhal, M.3
Chaloupkova, R.4
Tesinska, I.5
Monincova, M.6
Prokop, Z.7
Bartos, M.8
Pavlik, I.9
Rychlik, I.10
-
25
-
-
14644406189
-
Quantitative analysis of substrate specificity of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26
-
Kmunicek J, Hynkova K, Jedlicka T, Nagata Y, Negri A, Gago F, Wade RC, Damborsky J (2005) Quantitative analysis of substrate specificity of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26. Biochemistry 44:3390-3401
-
(2005)
Biochemistry
, vol.44
, pp. 3390-3401
-
-
Kmunicek, J.1
Hynkova, K.2
Jedlicka, T.3
Nagata, Y.4
Negri, A.5
Gago, F.6
Wade, R.C.7
Damborsky, J.8
-
26
-
-
0036952382
-
Cloning and characterization of lin genes responsible for the degradation of hexachlorocyclohexane isomers by Sphingomonas paucimobilis strain B90
-
Kumari R, Subudhi S, Suar M, Dhingra G, Raina V, Dogra C, Lal S, van der Meer JR, Holliger C, Lal R (2002) Cloning and characterization of lin genes responsible for the degradation of hexachlorocyclohexane isomers by Sphingomonas paucimobilis strain B90. Appl Environ Microbiol 68:6021-6028
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 6021-6028
-
-
Kumari, R.1
Subudhi, S.2
Suar, M.3
Dhingra, G.4
Raina, V.5
Dogra, C.6
Lal, S.7
Van Der Meer, J.R.8
Holliger, C.9
Lal, R.10
-
27
-
-
33644545035
-
Diversity, distribution and divergence of lin genes in hexachlorocyclohexane-degrading sphingomonads
-
Lal R, Dogra C, Malhotra S, Sharma P, Pal R (2006) Diversity, distribution and divergence of lin genes in hexachlorocyclohexane-degrading sphingomonads. Trends Biotechnol 24:121-130
-
(2006)
Trends Biotechnol
, vol.24
, pp. 121-130
-
-
Lal, R.1
Dogra, C.2
Malhotra, S.3
Sharma, P.4
Pal, R.5
-
28
-
-
0042663857
-
Global gridded emission inventories of beta-hexachlorocyclohexane
-
Li YF, Scholtz MT, Van Heyst BJ (2003) Global gridded emission inventories of beta-hexachlorocyclohexane. Environ Sci Technol 37:3493-3498
-
(2003)
Environ Sci Technol
, vol.37
, pp. 3493-3498
-
-
Li, Y.F.1
Scholtz, M.T.2
Van Heyst, B.J.3
-
30
-
-
0034700262
-
Crystal structure of the haloalkane dehalogenase from Sphingomonas paucimobilis UT26
-
Marek J, Vevodova J, Smatanova IK, Nagata Y, Svensson LA, Newman J, Takagi M, Damborsky J (2000) Crystal structure of the haloalkane dehalogenase from Sphingomonas paucimobilis UT26. Biochemistry 39:14082-14086
-
(2000)
Biochemistry
, vol.39
, pp. 14082-14086
-
-
Marek, J.1
Vevodova, J.2
Smatanova, I.K.3
Nagata, Y.4
Svensson, L.A.5
Newman, J.6
Takagi, M.7
Damborsky, J.8
-
31
-
-
0025326948
-
Transposition of an antibiotic resistance element in mycobacteria
-
Martin C, Timm J, Rauzier J, Gomez-Lus R, Davies J, Gicquel B (1990) Transposition of an antibiotic resistance element in mycobacteria. Nature 345:739-743
-
(1990)
Nature
, vol.345
, pp. 739-743
-
-
Martin, C.1
Timm, J.2
Rauzier, J.3
Gomez-Lus, R.4
Davies, J.5
Gicquel, B.6
-
32
-
-
0031895255
-
Cloning and sequencing of a 2,5-dichlorohydroquinone reductive dehalogenase gene whose product is involved in degradation of γ-Hexachlorocyclohexane by Sphingomonas paucimobilis
-
Miyauchi K, Suh S-K, Nagata Y, Takagi M (1998) Cloning and sequencing of a 2,5-dichlorohydroquinone reductive dehalogenase gene whose product is involved in degradation of γ-Hexachlorocyclohexane by Sphingomonas paucimobilis. J Bacteriol 180:1354-1359
-
(1998)
J Bacteriol
, vol.180
, pp. 1354-1359
-
-
Miyauchi, K.1
Suh, S.-K.2
Nagata, Y.3
Takagi, M.4
-
33
-
-
0032704711
-
Cloning and sequencing of a novel type of meta-cleavage dioxygenase gene whose product is involved in the degradation of γ-hexachlorocyclohexane in Sphingomonas paucimobilis
-
Miyauchi K, Adachi Y, Nagata Y, Takagi M (1999) Cloning and sequencing of a novel type of meta-cleavage dioxygenase gene whose product is involved in the degradation of γ-hexachlorocyclohexane in Sphingomonas paucimobilis. J Bacteriol 181:6712-6719
-
(1999)
J Bacteriol
, vol.181
, pp. 6712-6719
-
-
Miyauchi, K.1
Adachi, Y.2
Nagata, Y.3
Takagi, M.4
-
34
-
-
0036211214
-
Cloning and characterization of linR, involved in regulation of the downstream pathway for γ-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26
-
Miyauchi K, Lee HS, Fukuda M, Takagi M, Nagata Y (2002) Cloning and characterization of linR, involved in regulation of the downstream pathway for γ-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26. Appl Environ Microbiol 68:1803-1807
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 1803-1807
-
-
Miyauchi, K.1
Lee, H.S.2
Fukuda, M.3
Takagi, M.4
Nagata, Y.5
-
35
-
-
15244351021
-
Identification of insertion sequence from a γ-hexachlorocyclohexane degrading bacterium, Sphingomonas paucimobilis UT26
-
Miyauchi K, Fukuda M, Tsuda M, Takagi M, Nagata Y (2005) Identification of insertion sequence from a γ-hexachlorocyclohexane degrading bacterium, Sphingomonas paucimobilis UT26. Biosci Biotechnol Biochem 69:216-219
-
(2005)
Biosci Biotechnol Biochem
, vol.69
, pp. 216-219
-
-
Miyauchi, K.1
Fukuda, M.2
Tsuda, M.3
Takagi, M.4
Nagata, Y.5
-
36
-
-
33751017401
-
Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in γ-hexachlorocyclohexane degradation
-
Miyazaki R, Sato Y, Ito M, Ohtsubo Y, Nagata Y, Tsuda M (2006) Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in γ-hexachlorocyclohexane degradation. Appl Environ Microbiol 72:6923-6933
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 6923-6933
-
-
Miyazaki, R.1
Sato, Y.2
Ito, M.3
Ohtsubo, Y.4
Nagata, Y.5
Tsuda, M.6
-
37
-
-
33644960166
-
Distribution and phylogeny of hexachlorocyclohexane-degrading bacteria in soils from Spain
-
Mohn WW, Mertens B, Neufeld JD, Verstraete W, de Lorenzo V (2006a) Distribution and phylogeny of hexachlorocyclohexane-degrading bacteria in soils from Spain. Environ Microbiol 8:60-68
-
(2006)
Environ Microbiol
, vol.8
, pp. 60-68
-
-
Mohn, W.W.1
Mertens, B.2
Neufeld, J.D.3
Verstraete, W.4
De Lorenzo, V.5
-
38
-
-
33644956913
-
Surveying biotransformations with a la carte genetic traps: Translating dehydrochlorination of lindane (γ-hexachlorocyclohexane) into lacZ-based phenotypes
-
Mohn WW, Garmendia J, Galvao TC, de Lorenzo V (2006b) Surveying biotransformations with a la carte genetic traps: translating dehydrochlorination of lindane (γ-hexachlorocyclohexane) into lacZ-based phenotypes. Environ Microbiol 8:546-555
-
(2006)
Environ Microbiol
, vol.8
, pp. 546-555
-
-
Mohn, W.W.1
Garmendia, J.2
Galvao, T.C.3
De Lorenzo, V.4
-
39
-
-
33947378334
-
Weak activity of haloalkane dehalogenase LinB with 1,2,3-trichloropropane revealed by X-ray crystallography and microcalorimetry
-
6
-
Monincova M, Prokop Z, Vevodova J, Nagata Y, Damborsky J (2007) Weak activity of haloalkane dehalogenase LinB with 1,2,3-trichloropropane revealed by X-ray crystallography and microcalorimetry. Appl Environ Microbiol 73(6):2005-2008
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 2005-2008
-
-
Monincova, M.1
Prokop, Z.2
Vevodova, J.3
Nagata, Y.4
Damborsky, J.5
-
40
-
-
0027408819
-
Stereochemical analysis of γ-HCH degradation by Pseudomonas paucimobilis UT26
-
Nagasawa S, Kikuchi R, Nagata Y, Takagi M, Matsuo M (1993a) Stereochemical analysis of γ-HCH degradation by Pseudomonas paucimobilis UT26. Chemosphere 26:1187-1201
-
(1993)
Chemosphere
, vol.26
, pp. 1187-1201
-
-
Nagasawa, S.1
Kikuchi, R.2
Nagata, Y.3
Takagi, M.4
Matsuo, M.5
-
41
-
-
0027160384
-
Aerobic mineralization of γ-HCH by Pseudomonas paucimobilis UT26
-
Nagasawa S, Kikuchi R, Nagata Y, Takagi M, Matsuo M (1993b) Aerobic mineralization of γ-HCH by Pseudomonas paucimobilis UT26. Chemosphere 26:1719-1728
-
(1993)
Chemosphere
, vol.26
, pp. 1719-1728
-
-
Nagasawa, S.1
Kikuchi, R.2
Nagata, Y.3
Takagi, M.4
Matsuo, M.5
-
42
-
-
0027436421
-
Cloning and sequencing of a dehalogenase gene encoding an enzyme with hydrolase activity involved in the degradation of γ-hexachlorocyclohexane (γ-HCH) in Pseudomonas paucimobilis
-
Nagata Y, Nariya T, Ohtomo R, Fukuda M, Yano K, Takagi M (1993a) Cloning and sequencing of a dehalogenase gene encoding an enzyme with hydrolase activity involved in the degradation of γ-hexachlorocyclohexane (γ-HCH) in Pseudomonas paucimobilis. J Bacteriol 175:6403-6410
-
(1993)
J Bacteriol
, vol.175
, pp. 6403-6410
-
-
Nagata, Y.1
Nariya, T.2
Ohtomo, R.3
Fukuda, M.4
Yano, K.5
Takagi, M.6
-
43
-
-
84871380178
-
Purification and characterization of γ-hexachlorocyclohexane (γ-HCH) dehydrochlorinase (LinA) from Pseudomonas paucimobilis
-
Nagata Y, Hatta T, Imai R, Kimbara K, Fukuda M, Yano K, Takagi M (1993b) Purification and characterization of γ-hexachlorocyclohexane (γ-HCH) dehydrochlorinase (LinA) from Pseudomonas paucimobilis. Biosci Biotech Biochem 57:1582-1583
-
(1993)
Biosci Biotech Biochem
, vol.57
, pp. 1582-1583
-
-
Nagata, Y.1
Hatta, T.2
Imai, R.3
Kimbara, K.4
Fukuda, M.5
Yano, K.6
Takagi, M.7
-
44
-
-
0028276471
-
Cloning and Sequencing of a 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase gene involved in the degradation of γ-hexachlorocyclohexane in Pseudomonas paucimobilis
-
Nagata Y, Ohtomo R, Miyauchi K, Fukuda M, Yano K, Takagi M (1994) Cloning and Sequencing of a 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase gene involved in the degradation of γ-hexachlorocyclohexane in Pseudomonas paucimobilis. J Bacteriol 176:3117-3125
-
(1994)
J Bacteriol
, vol.176
, pp. 3117-3125
-
-
Nagata, Y.1
Ohtomo, R.2
Miyauchi, K.3
Fukuda, M.4
Yano, K.5
Takagi, M.6
-
45
-
-
0030853537
-
Purification and characterization of haloalkane dehalogenase of a new substrate class from a γ-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26
-
Nagata Y, Miyauchi K, Damborsky J, Manova K, Ansorgova A, Takagi M (1997) Purification and characterization of haloalkane dehalogenase of a new substrate class from a γ-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26. Appl Environ Micobiol 63:3707-3710
-
(1997)
Appl Environ Micobiol
, vol.63
, pp. 3707-3710
-
-
Nagata, Y.1
Miyauchi, K.2
Damborsky, J.3
Manova, K.4
Ansorgova, A.5
Takagi, M.6
-
46
-
-
0032835982
-
Two different types of dehalogenase, LinA and LinB, which are involved in the γ-HCH degradation in Sphingomonas paucimobilis UT26, are localized in periplasmic space without molecular processing
-
Nagata Y, Futamura A, Miyauchi K, Takagi M (1999a) Two different types of dehalogenase, LinA and LinB, which are involved in the γ-HCH degradation in Sphingomonas paucimobilis UT26, are localized in periplasmic space without molecular processing. J Bacteriol 181:5409-5413
-
(1999)
J Bacteriol
, vol.181
, pp. 5409-5413
-
-
Nagata, Y.1
Futamura, A.2
Miyauchi, K.3
Takagi, M.4
-
47
-
-
0033387054
-
Complete analysis of genes and enzymes for γ-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26
-
Nagata Y, Miyauchi K, Takagi M (1999b) Complete analysis of genes and enzymes for γ-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26. J Ind Microbiol Biotechnol 23:380-390
-
(1999)
J Ind Microbiol Biotechnol
, vol.23
, pp. 380-390
-
-
Nagata, Y.1
Miyauchi, K.2
Takagi, M.3
-
48
-
-
0035575802
-
Identification of protein fold and catalytic residues of γ-hexachlorocyclohexane dehydrochlorinase LinA
-
Nagata Y, Mori K, Takagi M, Murzin AG, Damborsky J (2001) Identification of protein fold and catalytic residues of γ-hexachlorocyclohexane dehydrochlorinase LinA. Proteins 45:471-477
-
(2001)
Proteins
, vol.45
, pp. 471-477
-
-
Nagata, Y.1
Mori, K.2
Takagi, M.3
Murzin, A.G.4
Damborsky, J.5
-
49
-
-
0242432320
-
Reconstruction of mycobacterial dehalogenase Rv2579 by cumulative mutagenesis of haloalkane dehalogenase LinB
-
Nagata Y, Prokop Z, Marvanova S, Sykorova J, Monincova M, Tsuda M, Damborsky J (2003) Reconstruction of mycobacterial dehalogenase Rv2579 by cumulative mutagenesis of haloalkane dehalogenase LinB. Appl Environ Microbiol 69:2349-2355
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 2349-2355
-
-
Nagata, Y.1
Prokop, Z.2
Marvanova, S.3
Sykorova, J.4
Monincova, M.5
Tsuda, M.6
Damborsky, J.7
-
50
-
-
17444418325
-
Degradation of β-hexachlorocyclohexane by haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26
-
Nagata Y, Prokop Z, Sato Y, Jerabek P, Kumar A, Ohtsubo Y, Tsuda M, Damborsky J (2005) Degradation of β-hexachlorocyclohexane by haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26. Appl Environ Microbiol 71:2183-2185
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 2183-2185
-
-
Nagata, Y.1
Prokop, Z.2
Sato, Y.3
Jerabek, P.4
Kumar, A.5
Ohtsubo, Y.6
Tsuda, M.7
Damborsky, J.8
-
51
-
-
33645074406
-
Distribution of γ-hexachlorocyclohexane-degrading genes on three replicons in Sphingobium japonicum UT26
-
Nagata Y, Kamakura M, Endo R, Miyazaki R, Ohtsubo Y, Tsuda M (2006) Distribution of γ-hexachlorocyclohexane-degrading genes on three replicons in Sphingobium japonicum UT26. FEMS Microbiol Lett 256:112-118
-
(2006)
FEMS Microbiol Lett
, vol.256
, pp. 112-118
-
-
Nagata, Y.1
Kamakura, M.2
Endo, R.3
Miyazaki, R.4
Ohtsubo, Y.5
Tsuda, M.6
-
52
-
-
0037117757
-
Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26: Evidence for product- and water-mediated inhibition
-
Oakley AJ, Prokop Z, Bohac M, Kmunicek J, Jedlicka T, Monincova M, Kuta-Smatanova I, Nagata Y, Damborsky J, Wilce MC (2002) Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26: evidence for product- and water-mediated inhibition. Biochemistry 41:4847-4855
-
(2002)
Biochemistry
, vol.41
, pp. 4847-4855
-
-
Oakley, A.J.1
Prokop, Z.2
Bohac, M.3
Kmunicek, J.4
Jedlicka, T.5
Monincova, M.6
Kuta-Smatanova, I.7
Nagata, Y.8
Damborsky, J.9
Wilce, M.C.10
-
53
-
-
0942301386
-
Crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95 Å resolution: Dynamics of catalytic residues
-
Oakley AJ, Klvana M, Otyepka M, Nagata Y, Wilce MC, Damborsky J (2004) Crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95 Å resolution: dynamics of catalytic residues. Biochemistry 43:870-878
-
(2004)
Biochemistry
, vol.43
, pp. 870-878
-
-
Oakley, A.J.1
Klvana, M.2
Otyepka, M.3
Nagata, Y.4
Wilce, M.C.5
Damborsky, J.6
-
54
-
-
33846264124
-
The identification of catalytic pentad in the haloalkane dehalogenase DhmA from Mycobacterium avium N85: Reaction mechanism and molecular evolution
-
Pavlova M, Klvana M, Jesenska A, Prokop Z, Konecna H, Sato T, Tsuda M, Nagata Y, Damborsky J (2007) The identification of catalytic pentad in the haloalkane dehalogenase DhmA from Mycobacterium avium N85: reaction mechanism and molecular evolution. J Struct Biol 157:384-392
-
(2007)
J Struct Biol
, vol.157
, pp. 384-392
-
-
Pavlova, M.1
Klvana, M.2
Jesenska, A.3
Prokop, Z.4
Konecna, H.5
Sato, T.6
Tsuda, M.7
Nagata, Y.8
Damborsky, J.9
-
55
-
-
31744450975
-
Evolution of new protein topologies through multistep gene rearrangements
-
Peisajovich SG, Rockah L, Tawfik DS (2006) Evolution of new protein topologies through multistep gene rearrangements. Nat Genet 38:168-174
-
(2006)
Nat Genet
, vol.38
, pp. 168-174
-
-
Peisajovich, S.G.1
Rockah, L.2
Tawfik, D.S.3
-
57
-
-
0242413672
-
Catalytic mechanism of the haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26
-
Prokop Z, Monincova M, Chaloupkova R, Klvana M, Nagata Y, Janssen DB, Damborsky J (2003) Catalytic mechanism of the haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26. J Biol Chem 278:45094-45100
-
(2003)
J Biol Chem
, vol.278
, pp. 45094-45100
-
-
Prokop, Z.1
Monincova, M.2
Chaloupkova, R.3
Klvana, M.4
Nagata, Y.5
Janssen, D.B.6
Damborsky, J.7
-
58
-
-
84871795858
-
Method of detoxification of yperite by using haloalkane dehalogenases
-
Patent, Czech Republic, Application number: CZ 2005-352 A1
-
Prokop Z, Damborsky J, Oplustil F, Jesenska A, Nagata Y (2005) Method of detoxification of yperite by using haloalkane dehalogenases. Patent, Czech Republic, Application number: CZ 2005-352 A1
-
(2005)
-
-
Prokop, Z.1
Damborsky, J.2
Oplustil, F.3
Jesenska, A.4
Nagata, Y.5
-
59
-
-
0025133035
-
Degradation of alpha-, beta-, and gamma-hexachlorocyclohexane by a soil bacterium under aerobic conditions
-
Sahu SK, Patnaik KK, Sharmila M, Sethunathan N (1990) Degradation of alpha-, beta-, and gamma-hexachlorocyclohexane by a soil bacterium under aerobic conditions. Appl Environ Microbiol 56:3620-3622
-
(1990)
Appl Environ Microbiol
, vol.56
, pp. 3620-3622
-
-
Sahu, S.K.1
Patnaik, K.K.2
Sharmila, M.3
Sethunathan, N.4
-
60
-
-
23744498875
-
Two rhizobial strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, encode haloalkane dehalogenases with novel structures and substrate specificities
-
Sato Y, Monincova M, Chaloupkova R, Prokop Z, Ohtsubo Y, Minamisawa K, Tsuda M, Damborsky J, Nagata Y (2005) Two rhizobial strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, encode haloalkane dehalogenases with novel structures and substrate specificities. Appl Environ Microbiol 71:4372-4379
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 4372-4379
-
-
Sato, Y.1
Monincova, M.2
Chaloupkova, R.3
Prokop, Z.4
Ohtsubo, Y.5
Minamisawa, K.6
Tsuda, M.7
Damborsky, J.8
Nagata, Y.9
-
61
-
-
34249654569
-
Crystallization and preliminary crystallographic analysis of a haloalkane dehalogenase, DbjA, from Bradyrhizobium japonicum USDA110
-
Sato Y, Natsume R, Tsuda M, Damborsky J, Nagata Y, Senda T (2007) Crystallization and preliminary crystallographic analysis of a haloalkane dehalogenase, DbjA, from Bradyrhizobium japonicum USDA110. Acta Crystallogr F 63:294-296
-
(2007)
Acta Crystallogr F
, vol.63
, pp. 294-296
-
-
Sato, Y.1
Natsume, R.2
Tsuda, M.3
Damborsky, J.4
Nagata, Y.5
Senda, T.6
-
62
-
-
0002174737
-
Isolation and identification of an aerobic γ-HCH-decomposing bacterium from soil
-
Senoo K, Wada H (1989) Isolation and identification of an aerobic γ-HCH-decomposing bacterium from soil. Soil Sci Plant Nutr 35:79-87
-
(1989)
Soil Sci Plant Nutr
, vol.35
, pp. 79-87
-
-
Senoo, K.1
Wada, H.2
-
63
-
-
33748799126
-
Haloalkane dehalogenase LinB is responsible for β- And δ-hexachlorocyclohexane transformation in Sphingobium indicum B90A
-
Sharma P, Raina V, Kumari R, Malhotra S, Dogra C, Kumari H, Kohler HP, Buser HR, Holliger C, Lal R (2006) Haloalkane dehalogenase LinB is responsible for β- and δ-hexachlorocyclohexane transformation in Sphingobium indicum B90A. Appl Environ Microbiol 72:5720-5727
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5720-5727
-
-
Sharma, P.1
Raina, V.2
Kumari, R.3
Malhotra, S.4
Dogra, C.5
Kumari, H.6
Kohler, H.P.7
Buser, H.R.8
Holliger, C.9
Lal, R.10
-
64
-
-
0041823656
-
Haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26: X-ray crystallographic studies of dehalogenation of brominated substrates
-
Streltsov VA, Prokop Z, Damborsky J, Nagata Y, Oakley A, Wilce MCJ (2003) Haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26: X-ray crystallographic studies of dehalogenation of brominated substrates. Biochemistry 42:10104-10112
-
(2003)
Biochemistry
, vol.42
, pp. 10104-10112
-
-
Streltsov, V.A.1
Prokop, Z.2
Damborsky, J.3
Nagata, Y.4
Oakley, A.5
Wilce, M.C.J.6
-
65
-
-
29144498384
-
Enantioselective transformation of alpha-hexachlorocyclohexane by the dehydrochlorinases LinA1 and LinA2 from the soil bacterium Sphingomonas paucimobilis B90A
-
Suar M, Hauser A, Poiger T, Buser HR, Muller MD, Dogra C, Raina V, Holliger C, van der Meer JR, Lal R, Kohler HP (2005) Enantioselective transformation of alpha-hexachlorocyclohexane by the dehydrochlorinases LinA1 and LinA2 from the soil bacterium Sphingomonas paucimobilis B90A. Appl Environ Microbiol 71:8514-8518
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 8514-8518
-
-
Suar, M.1
Hauser, A.2
Poiger, T.3
Buser, H.R.4
Muller, M.D.5
Dogra, C.6
Raina, V.7
Holliger, C.8
Van Der Meer, J.R.9
Lal, R.10
Kohler, H.P.11
-
66
-
-
0035896524
-
Reaction mechanism and stereochemistry of γ-hexachlorocyclohexane dehydrochlorinase LinA
-
Trantirek L, Hynkova K, Nagata Y, Murzin A, Ansorgova A, Sklenar V, Damborsky J (2001) Reaction mechanism and stereochemistry of γ-hexachlorocyclohexane dehydrochlorinase LinA. J Biol Chem 276:7734-7740
-
(2001)
J Biol Chem
, vol.276
, pp. 7734-7740
-
-
Trantirek, L.1
Hynkova, K.2
Nagata, Y.3
Murzin, A.4
Ansorgova, A.5
Sklenar, V.6
Damborsky, J.7
-
67
-
-
0027640330
-
Abalone sperm lysin: Unusual mode of evolution of a gamete recognition protein
-
Vacquier VD, Lee YH (1993) Abalone sperm lysin: unusual mode of evolution of a gamete recognition protein. Zygote 1:181-196
-
(1993)
Zygote
, vol.1
, pp. 181-196
-
-
Vacquier, V.D.1
Lee, Y.H.2
-
68
-
-
0033572957
-
Factors influencing the distribution of lindane and other hexachlorocyclohexanes in the environment
-
Walker K (1999) Factors influencing the distribution of lindane and other hexachlorocyclohexanes in the environment. Environ Sci Technol 33:4373-4378
-
(1999)
Environ Sci Technol
, vol.33
, pp. 4373-4378
-
-
Walker, K.1
-
69
-
-
0032146829
-
Differential toxicity and environmental fates of hexachlorocyclohexane isomers
-
Willett K, Ulrich E, Hites R (1998) Differential toxicity and environmental fates of hexachlorocyclohexane isomers. Environ Sci Technol 32:2197-2207
-
(1998)
Environ Sci Technol
, vol.32
, pp. 2197-2207
-
-
Willett, K.1
Ulrich, E.2
Hites, R.3
-
70
-
-
33845753491
-
A gene linB2 responsible for the conversion of beta-HCH and 2,3,4,5,6-pentachlorocyclohexanol in Sphingomonas sp. BHC-A
-
Wu J, Hong Q, Han P, He J, Li S (2007) A gene linB2 responsible for the conversion of beta-HCH and 2,3,4,5,6-pentachlorocyclohexanol in Sphingomonas sp. BHC-A. Appl Microbiol Biotechnol 73:1097-1105
-
(2007)
Appl Microbiol Biotechnol
, vol.73
, pp. 1097-1105
-
-
Wu, J.1
Hong, Q.2
Han, P.3
He, J.4
Li, S.5
|