-
1
-
-
0028971733
-
New mini-Tn5 derivatives for insertion mutagenesis and genetic engineering in gram-negative bacteria
-
Alexeyev, M. F., I. N. Shokolenko, and T. P. Croughan. 1995. New mini-Tn5 derivatives for insertion mutagenesis and genetic engineering in gram-negative bacteria. Can. J. Microbiol. 41:1053-1055.
-
(1995)
Can. J. Microbiol
, vol.41
, pp. 1053-1055
-
-
Alexeyev, M.F.1
Shokolenko, I.N.2
Croughan, T.P.3
-
2
-
-
0031859323
-
Genetic analysis of dioxin dioxygenase of Sphingomonas sp. strain RW1: Catabolic genes dispersed on the genome
-
Armengaud, J., B. Happe, and K. N. Timmis. 1998. Genetic analysis of dioxin dioxygenase of Sphingomonas sp. strain RW1: catabolic genes dispersed on the genome. J. Bacteriol. 180:3954-3966.
-
(1998)
J. Bacteriol
, vol.180
, pp. 3954-3966
-
-
Armengaud, J.1
Happe, B.2
Timmis, K.N.3
-
3
-
-
18144453657
-
Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov
-
Balkwill, D. L., G. R. Drake, R. H. Reeves, J. K. Fredrickson, D. C. White, D. B. Ringelberg, D. P. Chandler, M. F. Romine, D. W. Kennedy, and C. M. Spadoni. 1997. Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov. Int. J. Syst. Bacteriol. 47:191-201.
-
(1997)
Int. J. Syst. Bacteriol
, vol.47
, pp. 191-201
-
-
Balkwill, D.L.1
Drake, G.R.2
Reeves, R.H.3
Fredrickson, J.K.4
White, D.C.5
Ringelberg, D.B.6
Chandler, D.P.7
Romine, M.F.8
Kennedy, D.W.9
Spadoni, C.M.10
-
4
-
-
85158014868
-
Xer site-specific recombination: Promoting chromosome segregation
-
L. N. R. Craig, R. Graigie, M. Gellert, and A. M. Lambowitz ed, ASM Press, Washington, DC
-
Barre, F.-X., and D. J. Sherratt. 2002. Xer site-specific recombination: promoting chromosome segregation, p. 149-161. In L. N. R. Craig, R. Graigie, M. Gellert, and A. M. Lambowitz (ed.), Mobile DNA II. ASM Press, Washington, DC.
-
(2002)
Mobile DNA II
, pp. 149-161
-
-
Barre, F.-X.1
Sherratt, D.J.2
-
5
-
-
21344441499
-
Structural and replicative diversity of large plasmids from sphinogomonads that degrade polycyclic aromatic compounds and xenobiotics
-
Basta, T., S. Buerger, and A. Stolz. 2005. Structural and replicative diversity of large plasmids from sphinogomonads that degrade polycyclic aromatic compounds and xenobiotics. Microbiology 151:2025- 2037.
-
(2005)
Microbiology
, vol.151
, pp. 2025-2037
-
-
Basta, T.1
Buerger, S.2
Stolz, A.3
-
6
-
-
2942512907
-
Detection and characterization of conjugative degradative plasmids in xenobiotic-degrading Sphingomonas strains
-
Basta, T., A. Keck, J. Klein, and A. Stolz. 2004. Detection and characterization of conjugative degradative plasmids in xenobiotic-degrading Sphingomonas strains. J. Bacteriol. 186:3862-3872.
-
(2004)
J. Bacteriol
, vol.186
, pp. 3862-3872
-
-
Basta, T.1
Keck, A.2
Klein, J.3
Stolz, A.4
-
7
-
-
0035085110
-
Transposase and cointegrase: Specialized transposition proteins of the bacterial insertion sequence IS21 and related elements
-
Berger, B., and D. Haas. 2001. Transposase and cointegrase: specialized transposition proteins of the bacterial insertion sequence IS21 and related elements. Cell Mol. Life Sci. 58:403-419.
-
(2001)
Cell Mol. Life Sci
, vol.58
, pp. 403-419
-
-
Berger, B.1
Haas, D.2
-
8
-
-
0024284091
-
Duplex opening by DnaA protein at novel sequences in initiation of replication at the origin of the Escherichia coli chromosome
-
Bramhill, D., and A. Kornberg. 1988. Duplex opening by DnaA protein at novel sequences in initiation of replication at the origin of the Escherichia coli chromosome. Cell 52:743-755.
-
(1988)
Cell
, vol.52
, pp. 743-755
-
-
Bramhill, D.1
Kornberg, A.2
-
9
-
-
0141838905
-
Characterization and regulation of the genes for a novel anthranilate 1,2-dioxygenase from Burkholderia cepacia DBO1
-
Chang, H. K., P. Mohseni, and G. J. Zylstra. 2003. Characterization and regulation of the genes for a novel anthranilate 1,2-dioxygenase from Burkholderia cepacia DBO1. J. Bacteriol. 185:5871-5881.
-
(2003)
J. Bacteriol
, vol.185
, pp. 5871-5881
-
-
Chang, H.K.1
Mohseni, P.2
Zylstra, G.J.3
-
10
-
-
0032433276
-
Novel organization of the genes for phthalate degradation from Burkholderia cepacia DBO1
-
Chang, H. K., and G. J. Zylstra. 1998. Novel organization of the genes for phthalate degradation from Burkholderia cepacia DBO1. J. Bacteriol. 180:6529-6537.
-
(1998)
J. Bacteriol
, vol.180
, pp. 6529-6537
-
-
Chang, H.K.1
Zylstra, G.J.2
-
11
-
-
0031983410
-
Isolation and characterization of a putative multidrug resistance pump from Vibrio cholerae
-
Colmer, J. A., J. A. Fralick, and A. N. Hamood. 1998. Isolation and characterization of a putative multidrug resistance pump from Vibrio cholerae. Mol. Microbiol. 27:63-72.
-
(1998)
Mol. Microbiol
, vol.27
, pp. 63-72
-
-
Colmer, J.A.1
Fralick, J.A.2
Hamood, A.N.3
-
12
-
-
8744268521
-
Identification and functional analysis of two aromatic-ring hydroxylating dioxygenases from a Sphingomonas strain that degrades various polycyclic aromatic hydrocarbons
-
Demanèche, S., C. Meyer, J. Micoud, M. Louwagie, J. C. Willison, and Y. Jouanneau. 2004. Identification and functional analysis of two aromatic-ring hydroxylating dioxygenases from a Sphingomonas strain that degrades various polycyclic aromatic hydrocarbons. Appl. Environ. Microbiol. 70:6714-6725.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 6714-6725
-
-
Demanèche, S.1
Meyer, C.2
Micoud, J.3
Louwagie, M.4
Willison, J.C.5
Jouanneau, Y.6
-
13
-
-
20444417458
-
The evolution of IncP catabolic plasmid
-
Dennis, J. J. 2005. The evolution of IncP catabolic plasmid. Curr. Opin. Biotechnol. 16:291-298.
-
(2005)
Curr. Opin. Biotechnol
, vol.16
, pp. 291-298
-
-
Dennis, J.J.1
-
14
-
-
4344678209
-
Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene degradation plasmid from Pseudomonas putida strain NCIB 9816-4
-
Dennis, J. J., and G. J. Zylstra. 2004. Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene degradation plasmid from Pseudomonas putida strain NCIB 9816-4. J. Mol. Biol. 341:753-768.
-
(2004)
J. Mol. Biol
, vol.341
, pp. 753-768
-
-
Dennis, J.J.1
Zylstra, G.J.2
-
15
-
-
17644392862
-
The crystal structure of the outer membrane protein VceC from the bacterial pathogen Vibrio cholerae at 1.8 Å resolution
-
Federici, L., D. Du, F. Walas, H. Matsumura, J. Fernandez-Recio, K. S. McKeegan, M. I. Borges-Walmsley, B. F. Luisi, and A. R. Walmsley. 2005. The crystal structure of the outer membrane protein VceC from the bacterial pathogen Vibrio cholerae at 1.8 Å resolution. J. Biol. Chem. 280:15307-15314.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 15307-15314
-
-
Federici, L.1
Du, D.2
Walas, F.3
Matsumura, H.4
Fernandez-Recio, J.5
McKeegan, K.S.6
Borges-Walmsley, M.I.7
Luisi, B.F.8
Walmsley, A.R.9
-
16
-
-
33644861233
-
The partitioned Rhizobium etli genome: Genetic and metabolic redundancy in seven interacting replicons
-
González, V., R. I. Santamaría, P. Bustos, I. Hernández-González, A. Medrano-Soto, G. Moreno-Hagelsieb, S. C. Janga, M. A. Ramírez, V. Jiménez-Jacinto J. Collado-Vides, and G. Dávila. 2006. The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons. Proc. Natl. Acad. Sci. USA 103:3834-3839.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 3834-3839
-
-
González, V.1
Santamaría, R.I.2
Bustos, P.3
Hernández-González, I.4
Medrano-Soto, A.5
Moreno-Hagelsieb, G.6
Janga, S.C.7
Ramírez, M.A.8
Jiménez-Jacinto, V.9
Collado-Vides, J.10
Dávila, G.11
-
17
-
-
0035861511
-
Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58
-
Goodner, B., G. Hinkle, S. Gattung, N. Miller, M. Blanchard, B. Qurollo, B. S. Goldman, Y. Cao, M. Askenazi, C. Halling, L. Mullin, K. Houmiel, J. Gordon, M. Vaudin, O. Iartchouk, A. Epp, F. Liu, C. Wollam, M. Allinger, D. Doughty, C. Scott, C. Lappas, B. Markelz, C. Flanagan, C. Crowell, J. Gurson, C. Lomo, C. Sear, G. Strub, C. Cielo, and S. Slater. 2001. Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58. Science 294:2323-2328.
-
(2001)
Science
, vol.294
, pp. 2323-2328
-
-
Goodner, B.1
Hinkle, G.2
Gattung, S.3
Miller, N.4
Blanchard, M.5
Qurollo, B.6
Goldman, B.S.7
Cao, Y.8
Askenazi, M.9
Halling, C.10
Mullin, L.11
Houmiel, K.12
Gordon, J.13
Vaudin, M.14
Iartchouk, O.15
Epp, A.16
Liu, F.17
Wollam, C.18
Allinger, M.19
Doughty, D.20
Scott, C.21
Lappas, C.22
Markelz, B.23
Flanagan, C.24
Crowell, C.25
Gurson, J.26
Lomo, C.27
Sear, C.28
Strub, G.29
Cielo, C.30
Slater, S.31
more..
-
18
-
-
0036933239
-
Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida
-
Greated, A., L. Lambertsen, P. A. Williams, and C. M. Thomas. 2002. Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida. Environ. Microbiol. 4:856-871.
-
(2002)
Environ. Microbiol
, vol.4
, pp. 856-871
-
-
Greated, A.1
Lambertsen, L.2
Williams, P.A.3
Thomas, C.M.4
-
19
-
-
85158006363
-
The movement of Tn3-like elements: Transposition and cointegrate resolution
-
L. N. R. Craig, R. Graigie, M. Gellert, and A. M. Lambowitz ed, ASM Press, Washington, DC
-
Grindley, N. D. F. 2002. The movement of Tn3-like elements: transposition and cointegrate resolution, p. 272-302. In L. N. R. Craig, R. Graigie, M. Gellert, and A. M. Lambowitz (ed.), Mobile DNA II. ASM Press, Washington, DC.
-
(2002)
Mobile DNA II
, pp. 272-302
-
-
Grindley, N.D.F.1
-
20
-
-
0032959708
-
Transcriptional organization of the czc heavy-metal homeostasis determinant from Alcaligenes eutropus
-
Grosse, C., G. Grass, A. Anton, S. Franke, A. N. Santos, B. Lawley, N. L. Brown, and D. H. Nies. 1999. Transcriptional organization of the czc heavy-metal homeostasis determinant from Alcaligenes eutropus. J. Bacteriol. 181:2385-2393.
-
(1999)
J. Bacteriol
, vol.181
, pp. 2385-2393
-
-
Grosse, C.1
Grass, G.2
Anton, A.3
Franke, S.4
Santos, A.N.5
Lawley, B.6
Brown, N.L.7
Nies, D.H.8
-
21
-
-
0037150032
-
Sphingomonas sp. strain KA1, carrying a carbazole dioxygenase gene homologue, degrades chlorinated dibenzo-p-dioxins in soil
-
Habe, H., Y. Ashikawa, Y. Saiki, T. Yoshida, H. Nojiri, and T. Omori. 2002. Sphingomonas sp. strain KA1, carrying a carbazole dioxygenase gene homologue, degrades chlorinated dibenzo-p-dioxins in soil. FEMS Microbiol. Lett. 211:43-49.
-
(2002)
FEMS Microbiol. Lett
, vol.211
, pp. 43-49
-
-
Habe, H.1
Ashikawa, Y.2
Saiki, Y.3
Yoshida, T.4
Nojiri, H.5
Omori, T.6
-
22
-
-
27744566414
-
The fluorene catabolic linear plasmid in Terrabacter sp. strain DBF63 carries the beta-ketoadipate pathway genes, pcaRHGBDCFIJ, also found in proteobacteria
-
Habe, H., J. S. Chung, A. Ishida, K. Kasuga, K. Ide, T. Takemura, H. Nojiri, H. Yamane, and T. Omori. 2005. The fluorene catabolic linear plasmid in Terrabacter sp. strain DBF63 carries the beta-ketoadipate pathway genes, pcaRHGBDCFIJ, also found in proteobacteria. Microbiology 151:3713-3722.
-
(2005)
Microbiology
, vol.151
, pp. 3713-3722
-
-
Habe, H.1
Chung, J.S.2
Ishida, A.3
Kasuga, K.4
Ide, K.5
Takemura, T.6
Nojiri, H.7
Yamane, H.8
Omori, T.9
-
23
-
-
4344610106
-
Characterization of the upper pathway genes for fluorene metabolism in Terrabacter sp. strain DBF63
-
Habe, H., J. S. Chung, H. Kato, Y. Ayabe, K. Kasuga, T. Yoshida, H. Nojiri, H. Yamane, and T. Omori. 2004. Characterization of the upper pathway genes for fluorene metabolism in Terrabacter sp. strain DBF63. J. Bacteriol. 186:5938-5944.
-
(2004)
J. Bacteriol
, vol.186
, pp. 5938-5944
-
-
Habe, H.1
Chung, J.S.2
Kato, H.3
Ayabe, Y.4
Kasuga, K.5
Yoshida, T.6
Nojiri, H.7
Yamane, H.8
Omori, T.9
-
24
-
-
0030000836
-
Analysis of cumene (isopropylbenzene) degradation genes from Pseudomonas fluorescens IP01
-
Habe, H., K. Kasuga, H. Nojiri, H. Yamane, and T. Omori. 1996. Analysis of cumene (isopropylbenzene) degradation genes from Pseudomonas fluorescens IP01. Appl. Environ. Microbiol. 62:4471-4477.
-
(1996)
Appl. Environ. Microbiol
, vol.62
, pp. 4471-4477
-
-
Habe, H.1
Kasuga, K.2
Nojiri, H.3
Yamane, H.4
Omori, T.5
-
25
-
-
0037361704
-
Phthalate catabolic gene cluster is linked to the angular dioxygenase gene in Terrabacter sp. strain DBF63
-
Habe, H., M. Miyakoshi, J. Chung, K. Kasuga, T. Yoshida, H. Nojiri, and T. Omori. 2003. Phthalate catabolic gene cluster is linked to the angular dioxygenase gene in Terrabacter sp. strain DBF63. Appl. Microbiol. Biotechnol. 61:44-54.
-
(2003)
Appl. Microbiol. Biotechnol
, vol.61
, pp. 44-54
-
-
Habe, H.1
Miyakoshi, M.2
Chung, J.3
Kasuga, K.4
Yoshida, T.5
Nojiri, H.6
Omori, T.7
-
26
-
-
0029795374
-
The beta-ketoadipate pathway and the biology of self-identity
-
Harwood, C. S., and R. E. Parales. 1996. The beta-ketoadipate pathway and the biology of self-identity. Annu. Rev. Microbiol. 50:553-590.
-
(1996)
Annu. Rev. Microbiol
, vol.50
, pp. 553-590
-
-
Harwood, C.S.1
Parales, R.E.2
-
27
-
-
0032884944
-
Identification of a gene cluster, czr, involved in cadmium and zinc resistance in Pseudomonas aeruginosa
-
Hassan, M.-T., D. van der Lilie, D. Springael, U. Römling, N. Ahmed, and M. Mergeay. 1999. Identification of a gene cluster, czr, involved in cadmium and zinc resistance in Pseudomonas aeruginosa. Gene 238:417-425.
-
(1999)
Gene
, vol.238
, pp. 417-425
-
-
Hassan, M.-T.1
van der Lilie, D.2
Springael, D.3
Römling, U.4
Ahmed, N.5
Mergeay, M.6
-
28
-
-
15744395874
-
Diversity of carbazole-degrading bacteria having the car gene cluster: Isolation of a novel gram-positive carbazole-degrading bacterium
-
Inoue, K., H. Habe, H. Yamane, T. Omori, and H. Nojiri. 2005. Diversity of carbazole-degrading bacteria having the car gene cluster: isolation of a novel gram-positive carbazole-degrading bacterium. FEMS Microbiol. Lett. 245:145-153.
-
(2005)
FEMS Microbiol. Lett
, vol.245
, pp. 145-153
-
-
Inoue, K.1
Habe, H.2
Yamane, H.3
Omori, T.4
Nojiri, H.5
-
29
-
-
19944426997
-
Divergent structures of carbazole degradative car operons isolated from gram-negative bacteria
-
Inoue, K., J. Widada, S. Nakai, T. Endoh, M. Urata, Y. Ashikawa, M. Shintani, Y. Saiki, T. Yoshida, H. Habe, T. Omori, and H. Nojiri. 2004. Divergent structures of carbazole degradative car operons isolated from gram-negative bacteria. Biosci. Biotechnol. Biochem. 68:1467-1480.
-
(2004)
Biosci. Biotechnol. Biochem
, vol.68
, pp. 1467-1480
-
-
Inoue, K.1
Widada, J.2
Nakai, S.3
Endoh, T.4
Urata, M.5
Ashikawa, Y.6
Shintani, M.7
Saiki, Y.8
Yoshida, T.9
Habe, H.10
Omori, T.11
Nojiri, H.12
-
30
-
-
0036933805
-
Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440
-
Jiménez, J. I., B. Minambres, J. L. García, and E. Díaz. 2002. Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440. Environ. Microbiol. 4:824-841.
-
(2002)
Environ. Microbiol
, vol.4
, pp. 824-841
-
-
Jiménez, J.I.1
Minambres, B.2
García, J.L.3
Díaz, E.4
-
31
-
-
0034739881
-
Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti
-
Kaneko, T., Y. Nakamura, S. Sato, E. Asamizu, T. Kato, S. Sasamoto, A. Watanabe, K. Idesawa, A. Ishikawa, K. Kawashima, T. Kimura, Y. Kishida, C. Kiyokawa, M. Kohara, M. Matsumoto, A. Matsuno, Y. Mochizuki, S. Nakayama, N. Nakazaki, S. Shimpo, S. Sugimoto, S. Takeuchi, M. Yamada, and S. Tabata. 2000. Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti. DNA Res. 7:331-338.
-
(2000)
DNA Res
, vol.7
, pp. 331-338
-
-
Kaneko, T.1
Nakamura, Y.2
Sato, S.3
Asamizu, E.4
Kato, T.5
Sasamoto, S.6
Watanabe, A.7
Idesawa, K.8
Ishikawa, A.9
Kawashima, K.10
Kimura, T.11
Kishida, Y.12
Kiyokawa, C.13
Kohara, M.14
Matsumoto, M.15
Matsuno, A.16
Mochizuki, Y.17
Nakayama, S.18
Nakazaki, N.19
Shimpo, S.20
Sugimoto, S.21
Takeuchi, S.22
Yamada, M.23
Tabata, S.24
more..
-
32
-
-
0034799210
-
Isolation and characterization of the genes encoding a novel oxygenase component of angular dioxygenase from the gram-positive dibenzofuran-degrader Terrabacter sp. strain DBF63
-
Kasuga, K., H. Habe, J. S. Chung, T. Yoshida, H. Nojiri, H. Yamane, and T. Omori. 2001. Isolation and characterization of the genes encoding a novel oxygenase component of angular dioxygenase from the gram-positive dibenzofuran-degrader Terrabacter sp. strain DBF63. Biochem. Biophys. Res. Commun. 283:195-204.
-
(2001)
Biochem. Biophys. Res. Commun
, vol.283
, pp. 195-204
-
-
Kasuga, K.1
Habe, H.2
Chung, J.S.3
Yoshida, T.4
Nojiri, H.5
Yamane, H.6
Omori, T.7
-
33
-
-
0347285389
-
Sequence analysis of the mobile genetic island pKLC102 of Pseudomonas aeruginosa C
-
Klockgether, J., O. Reva, K. Larbig, and B. Tümmler. 2004. Sequence analysis of the mobile genetic island pKLC102 of Pseudomonas aeruginosa C. J. Bacteriol. 186:518-534.
-
(2004)
J. Bacteriol
, vol.186
, pp. 518-534
-
-
Klockgether, J.1
Reva, O.2
Larbig, K.3
Tümmler, B.4
-
34
-
-
33747142661
-
Functional and transcriptional analyses of the initial oxygenase genes for acenaphthene degradation from Sphingomonas sp. strain A4
-
Kouzuma, A., O. Pinyakong, H. Nojiri, T. Omori, H. Yamane, and H. Habe. 2006. Functional and transcriptional analyses of the initial oxygenase genes for acenaphthene degradation from Sphingomonas sp. strain A4. Microbiology 152:2455-2467.
-
(2006)
Microbiology
, vol.152
, pp. 2455-2467
-
-
Kouzuma, A.1
Pinyakong, O.2
Nojiri, H.3
Omori, T.4
Yamane, H.5
Habe, H.6
-
35
-
-
3042837371
-
Complete nucleotide sequence and organization of the naphthalene catabolic plasmid pND6-1 from Pseudomonas sp. strain ND6
-
Li, W., J. Shi, X. Wang, Y. Han, W. Tong, L. Ma, B. Liu, and B. Cai. 2004. Complete nucleotide sequence and organization of the naphthalene catabolic plasmid pND6-1 from Pseudomonas sp. strain ND6. Gene 336:231-240.
-
(2004)
Gene
, vol.336
, pp. 231-240
-
-
Li, W.1
Shi, J.2
Wang, X.3
Han, Y.4
Tong, W.5
Ma, L.6
Liu, B.7
Cai, B.8
-
36
-
-
0037423746
-
Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676
-
Maeda, K., H. Nojiri, M. Shintani, T. Yoshida, H. Habe, and T. Omori. 2003. Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676. J. Mol. Biol. 326:21-33.
-
(2003)
J. Mol. Biol
, vol.326
, pp. 21-33
-
-
Maeda, K.1
Nojiri, H.2
Shintani, M.3
Yoshida, T.4
Habe, H.5
Omori, T.6
-
37
-
-
0034811709
-
Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP
-
Martinez, B., J. Tomkins, L. P. Wackett, R. Wing, and M. J. Sadowsky. 2001. Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP. J. Bacteriol. 183:5684-5697.
-
(2001)
J. Bacteriol
, vol.183
, pp. 5684-5697
-
-
Martinez, B.1
Tomkins, J.2
Wackett, L.P.3
Wing, R.4
Sadowsky, M.J.5
-
38
-
-
0032934359
-
Genetic and biochemical characterization of a 2-pyrone-4, 6-dicarboxylic acid hydrolase involved in the protocatechuate 4,5-cleavage pathway of Sphingomonas paucimobilis SYK-6
-
Masai, E., S. Shinohara, H. Hara, S. Nishikawa, Y. Katayama, and M. Fukuda. 1999. Genetic and biochemical characterization of a 2-pyrone-4, 6-dicarboxylic acid hydrolase involved in the protocatechuate 4,5-cleavage pathway of Sphingomonas paucimobilis SYK-6. J. Bacteriol. 181:55-62.
-
(1999)
J. Bacteriol
, vol.181
, pp. 55-62
-
-
Masai, E.1
Shinohara, S.2
Hara, H.3
Nishikawa, S.4
Katayama, Y.5
Fukuda, M.6
-
39
-
-
0036024582
-
Microbial arsenic: From geocycles to genes and enzymes
-
Mukhopadhyay, R., B. P. Rosen, L. T. Phung, and S. Silver. 2002. Microbial arsenic: from geocycles to genes and enzymes. FEMS Microbiol. Rev. 26:311-325.
-
(2002)
FEMS Microbiol. Rev
, vol.26
, pp. 311-325
-
-
Mukhopadhyay, R.1
Rosen, B.P.2
Phung, L.T.3
Silver, S.4
-
40
-
-
0033387054
-
Complete analysis of genes and enzymes for gamma-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26
-
Nagata, Y., K. Miyauchi, and M. Takagi. 1999. Complete analysis of genes and enzymes for gamma-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26. J. Ind. Microbiol. Biotechnol. 23:380-390.
-
(1999)
J. Ind. Microbiol. Biotechnol
, vol.23
, pp. 380-390
-
-
Nagata, Y.1
Miyauchi, K.2
Takagi, M.3
-
41
-
-
0035957330
-
-
Nierman, W. C., T. V. Feldblyum, M. T. Laub, I. T. Paulsen, K. E. Nelson, J. A. Eisen, J. F. Heidelberg, M. R. Alley, N. Ohta, J. R. Maddock, I. Potocka, W. C. Nelson, A. Newton, C. Stephens, N. D. Phadke, B. Ely, R. T. DeBoy, R. J. Dodson, A. S. Durkin, M. L. Gwinn, D. H. Haft, J. F. Kolonay, J. Smit, M. B. Craven, H. Khouri, J. Shetty, K. Berry, T. Utterback, K. Tran, A. Wolf, J. Vamathevan, M. Ermolaeva, O. White, S. L. Salzberg, J. C. Venter, L. Shapiro, and C. M. Fraser. 2001. Complete genome sequence of Caulobacter crescentus. Proc. Natl. Acad. Sci. USA 98:4136-4141.
-
Nierman, W. C., T. V. Feldblyum, M. T. Laub, I. T. Paulsen, K. E. Nelson, J. A. Eisen, J. F. Heidelberg, M. R. Alley, N. Ohta, J. R. Maddock, I. Potocka, W. C. Nelson, A. Newton, C. Stephens, N. D. Phadke, B. Ely, R. T. DeBoy, R. J. Dodson, A. S. Durkin, M. L. Gwinn, D. H. Haft, J. F. Kolonay, J. Smit, M. B. Craven, H. Khouri, J. Shetty, K. Berry, T. Utterback, K. Tran, A. Wolf, J. Vamathevan, M. Ermolaeva, O. White, S. L. Salzberg, J. C. Venter, L. Shapiro, and C. M. Fraser. 2001. Complete genome sequence of Caulobacter crescentus. Proc. Natl. Acad. Sci. USA 98:4136-4141.
-
-
-
-
42
-
-
0000843661
-
Molecular bases of aerobic bacterial degradation of dioxins: Involvement of angular dioxygenation
-
Nojiri, H., and T. Omori. 2002. Molecular bases of aerobic bacterial degradation of dioxins: involvement of angular dioxygenation. Biosci. Biotechnol. Biochem. 61:2001-2016.
-
(2002)
Biosci. Biotechnol. Biochem
, vol.61
, pp. 2001-2016
-
-
Nojiri, H.1
Omori, T.2
-
43
-
-
0034981075
-
Genetic characterization and evolutionary implications of car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10
-
Nojiri, H., H. Sekiguchi, K. Maeda, M. Urata, S. Nakai, T. Yoshida, H. Habe, and T. Omori. 2001. Genetic characterization and evolutionary implications of car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10. J. Bacteriol. 183:3663-3679.
-
(2001)
J. Bacteriol
, vol.183
, pp. 3663-3679
-
-
Nojiri, H.1
Sekiguchi, H.2
Maeda, K.3
Urata, M.4
Nakai, S.5
Yoshida, T.6
Habe, H.7
Omori, T.8
-
44
-
-
2142659318
-
Divergence of mobile genetic elements involved in the distribution of xenobiotic-catabolic capacity
-
Nojiri, H., M. Shintani, and T. Omori. 2004. Divergence of mobile genetic elements involved in the distribution of xenobiotic-catabolic capacity. Appl. Microbiol. Biotechnol. 64:154-174.
-
(2004)
Appl. Microbiol. Biotechnol
, vol.64
, pp. 154-174
-
-
Nojiri, H.1
Shintani, M.2
Omori, T.3
-
45
-
-
33947400103
-
-
Ogawa, N., A. M. Chakrabarty, and O. Zaborina. 2004. Degradative plasmids, p. 341-376. In E. Funnell and G. J. Philips (ed.), Plasmid biology. ASM Press, Washington, DC.
-
Ogawa, N., A. M. Chakrabarty, and O. Zaborina. 2004. Degradative plasmids, p. 341-376. In E. Funnell and G. J. Philips (ed.), Plasmid biology. ASM Press, Washington, DC.
-
-
-
-
46
-
-
0038071684
-
The unique aromatic catabolic genes in sphingomonads degrading polycyclic aromatic hydrocarbons (PAHs)
-
Pinyakong, O., H. Habe, and T. Omori. 2003. The unique aromatic catabolic genes in sphingomonads degrading polycyclic aromatic hydrocarbons (PAHs). J. Gen. Appl. Microbiol. 49:1-19.
-
(2003)
J. Gen. Appl. Microbiol
, vol.49
, pp. 1-19
-
-
Pinyakong, O.1
Habe, H.2
Omori, T.3
-
47
-
-
0030817267
-
New functions for the three subunits of the CzcCBA cation-proton antiporter
-
Rensing, C., T. Pribyl, and D. H. Nies. 1997. New functions for the three subunits of the CzcCBA cation-proton antiporter. J. Bacteriol. 179:6871-6879.
-
(1997)
J. Bacteriol
, vol.179
, pp. 6871-6879
-
-
Rensing, C.1
Pribyl, T.2
Nies, D.H.3
-
48
-
-
0033027259
-
Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199
-
Romine, M. F., L. C. Stillwell, K.-K. Wong, S. J. Thurston, E. C. Sisk, C. Sensen, D. S. Gaasterland, J. K. Fredrickson, and J. D. Saffer. 1999. Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199. J. Bacteriol. 181:1585-1602.
-
(1999)
J. Bacteriol
, vol.181
, pp. 1585-1602
-
-
Romine, M.F.1
Stillwell, L.C.2
Wong, K.-K.3
Thurston, S.J.4
Sisk, E.C.5
Sensen, C.6
Gaasterland, D.S.7
Fredrickson, J.K.8
Saffer, J.D.9
-
49
-
-
0037203829
-
Genome sequence of the plant pathogen Ralstonia solanacearum
-
Salanoubat, M., S. Genin, F. Artiguenave, J. Gouzy, S. Mangenot, M. Arlat, A. Billault, P. Brottier, J. C. Camus, L. Callolico, M. Chandler, N. Choisne, C. Claudel-Renard, S. Cunnac, N. Demange, C. Gaspin, M. Lavie, A. Moisan, C. Robert, W. Saurin, T. Schiex, P. Siguier, P. Thebault, M. Whalen, P. Wincker, M. Levy, J. Weissenbach, and C. A. Boucher. 2002. Genome sequence of the plant pathogen Ralstonia solanacearum. Nature 415:497-502.
-
(2002)
Nature
, vol.415
, pp. 497-502
-
-
Salanoubat, M.1
Genin, S.2
Artiguenave, F.3
Gouzy, J.4
Mangenot, S.5
Arlat, M.6
Billault, A.7
Brottier, P.8
Camus, J.C.9
Callolico, L.10
Chandler, M.11
Choisne, N.12
Claudel-Renard, C.13
Cunnac, S.14
Demange, N.15
Gaspin, C.16
Lavie, M.17
Moisan, A.18
Robert, C.19
Saurin, W.20
Schiex, T.21
Siguier, P.22
Thebault, P.23
Whalen, M.24
Wincker, P.25
Levy, M.26
Weissenbach, J.27
Boucher, C.A.28
more..
-
51
-
-
0030744612
-
Identification and characterization of genes encoding carbazole 1,9a-dioxygenase in Pseudomonas sp. strain CA10
-
Sato, S., J.-W. Nam, K. Kasuga, H. Nojiri, H. Yamane, and T. Omori. 1997. Identification and characterization of genes encoding carbazole 1,9a-dioxygenase in Pseudomonas sp. strain CA10. J. Bacteriol. 179:4850-4858.
-
(1997)
J. Bacteriol
, vol.179
, pp. 4850-4858
-
-
Sato, S.1
Nam, J.-W.2
Kasuga, K.3
Nojiri, H.4
Yamane, H.5
Omori, T.6
-
52
-
-
0043009827
-
Complete nucleotide sequence of pHG1: A Ralstonia eutropha H16 megaplasmid encoding key enzymes of H(2)-based ithoautotrophy and anaerobiosis
-
Schwartz, E., A. Henne, R. Cramm, T. Eitinger, B. Friedrich, and G. Gottschalk. 2003. Complete nucleotide sequence of pHG1: a Ralstonia eutropha H16 megaplasmid encoding key enzymes of H(2)-based ithoautotrophy and anaerobiosis. J. Mol. Biol. 332:369-383.
-
(2003)
J. Mol. Biol
, vol.332
, pp. 369-383
-
-
Schwartz, E.1
Henne, A.2
Cramm, R.3
Eitinger, T.4
Friedrich, B.5
Gottschalk, G.6
-
53
-
-
28444464825
-
Recipient range of IncP-7 conjugative plasmid pCAR2 from Pseudomonas putida HS01 is broader than from other Pseudomonas strains
-
Shintani, M., H. Habe, M. Tsuda, T. Omori, H. Yamane, and H. Nojiri. 2005. Recipient range of IncP-7 conjugative plasmid pCAR2 from Pseudomonas putida HS01 is broader than from other Pseudomonas strains. Biotechnol. Lett. 27:1847-1853.
-
(2005)
Biotechnol. Lett
, vol.27
, pp. 1847-1853
-
-
Shintani, M.1
Habe, H.2
Tsuda, M.3
Omori, T.4
Yamane, H.5
Nojiri, H.6
-
54
-
-
33646588646
-
Characterization of the replication, maintenance, and transfer features of the IncP-7 plasmid pCAR1, which carries genes involved in carbazole and dioxin degradation
-
Shintani, M., H. Yano, H. Habe, T. Omori, H. Yamane, M. Tsuda, and H. Nojiri. 2006. Characterization of the replication, maintenance, and transfer features of the IncP-7 plasmid pCAR1, which carries genes involved in carbazole and dioxin degradation. Appl. Environ. Microbiol. 72:3206-3216.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 3206-3216
-
-
Shintani, M.1
Yano, H.2
Habe, H.3
Omori, T.4
Yamane, H.5
Tsuda, M.6
Nojiri, H.7
-
55
-
-
18844421873
-
Large plasmid pCAR2 and class II transposon Tn4576 are functional mobile genetic elements to distribute the carbazole/dioxin-degradative car gene cluster in different bacteria
-
Shintani, M., T. Yoshida, H. Habe, T. Omori, and H. Nojiri. 2005. Large plasmid pCAR2 and class II transposon Tn4576 are functional mobile genetic elements to distribute the carbazole/dioxin-degradative car gene cluster in different bacteria. Appl. Microbiol. Biotechnol. 67:370-382.
-
(2005)
Appl. Microbiol. Biotechnol
, vol.67
, pp. 370-382
-
-
Shintani, M.1
Yoshida, T.2
Habe, H.3
Omori, T.4
Nojiri, H.5
-
56
-
-
0242575001
-
Structure of haloacetate-catabolic IncP-1β plasmid pUO1 and genetic mobility of its residing halo-acetate-catabolic transposon
-
Sota, M., H. Kawasaki, and M. Tsuda. 2003. Structure of haloacetate-catabolic IncP-1β plasmid pUO1 and genetic mobility of its residing halo-acetate-catabolic transposon. J. Bacteriol. 185:6741-6745.
-
(2003)
J. Bacteriol
, vol.185
, pp. 6741-6745
-
-
Sota, M.1
Kawasaki, H.2
Tsuda, M.3
-
57
-
-
33744718828
-
Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase
-
Sota, M., H. Yano, A. Ono, R. Miyazaki, H. Ishii, H. Genka, E. M. Top, and M. Tsuda. 2006. Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase. J. Bacteriol. 188:4057-4067.
-
(2006)
J. Bacteriol
, vol.188
, pp. 4057-4067
-
-
Sota, M.1
Yano, H.2
Ono, A.3
Miyazaki, R.4
Ishii, H.5
Genka, H.6
Top, E.M.7
Tsuda, M.8
-
58
-
-
0029119519
-
Physical mapping and characterization of a catabolic plasmid from the deep-subsurface bacterium Sphingomonas sp. strain F199
-
Stillwell, L. C., S. J. Thurston, R. P. Schneider, M. F. Romine, J. K. Fredrickson, and J. D. Saffer. 1995. Physical mapping and characterization of a catabolic plasmid from the deep-subsurface bacterium Sphingomonas sp. strain F199. J. Bacteriol. 177:4537-4539.
-
(1995)
J. Bacteriol
, vol.177
, pp. 4537-4539
-
-
Stillwell, L.C.1
Thurston, S.J.2
Schneider, R.P.3
Romine, M.F.4
Fredrickson, J.K.5
Saffer, J.D.6
-
59
-
-
0019493991
-
DNA sequence of a plasmid-encoded dihydrofolate reductase
-
Swift, G., B. J. McCarthy, and F. Heffron. 1981. DNA sequence of a plasmid-encoded dihydrofolate reductase. Mol. Gen. Genet. 181:441-447.
-
(1981)
Mol. Gen. Genet
, vol.181
, pp. 441-447
-
-
Swift, G.1
McCarthy, B.J.2
Heffron, F.3
-
60
-
-
23844520705
-
Characterization of [3Fe-4S] ferredoxin DbfA3, which functions in the angular dioxygenase system of Terrabacter sp. strain DBF63
-
Takagi, T., H. Habe, T. Yoshida, H. Yamane, T. Omori, and H. Nojiri. 2005. Characterization of [3Fe-4S] ferredoxin DbfA3, which functions in the angular dioxygenase system of Terrabacter sp. strain DBF63. Appl. Microbiol. Biotechnol. 68:336-345.
-
(2005)
Appl. Microbiol. Biotechnol
, vol.68
, pp. 336-345
-
-
Takagi, T.1
Habe, H.2
Yoshida, T.3
Yamane, H.4
Omori, T.5
Nojiri, H.6
-
61
-
-
0035987241
-
The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 isolated from bacteria of the wheat rhizosphere
-
Tauch, A., S. Schneiker, W. Selbitschka, A. Puhler, L. S. van Overbeek, K. Smalla, C. M. Thomas, M. J. Bailey, L. J. Forney, A. Weightman, P. Ceglowski, T. Pembroke, E. Tietze, G. Schroder, E. Lanka, and J. D. van Elsas. 2002. The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 isolated from bacteria of the wheat rhizosphere. Microbiology 148:1637-1653.
-
(2002)
Microbiology
, vol.148
, pp. 1637-1653
-
-
Tauch, A.1
Schneiker, S.2
Selbitschka, W.3
Puhler, A.4
van Overbeek, L.S.5
Smalla, K.6
Thomas, C.M.7
Bailey, M.J.8
Forney, L.J.9
Weightman, A.10
Ceglowski, P.11
Pembroke, T.12
Tietze, E.13
Schroder, G.14
Lanka, E.15
van Elsas, J.D.16
-
62
-
-
3042826882
-
Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways
-
Trefault, N., R. de la Iglesia, A. M. Molina, M. Manzano, T. Ledger, D. Pérez-Pantoja, M. A. Sánchez, M. Stuardo, and B. González. 2004. Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways. Environ. Microbiol. 6:655-668.
-
(2004)
Environ. Microbiol
, vol.6
, pp. 655-668
-
-
Trefault, N.1
de la Iglesia, R.2
Molina, A.M.3
Manzano, M.4
Ledger, T.5
Pérez-Pantoja, D.6
Sánchez, M.A.7
Stuardo, M.8
González, B.9
-
63
-
-
4944257147
-
Transcriptional regulation of the ant operon, encoding two-component anthranilate 1,2-dioxygenase, on the carbazole-degradative plasmid pCAR1 of Pseudomonas resinovorans strain CA10
-
Urata, M., M. Miyakoshi, S. Kai, K. Maeda, H. Habe, T. Omori, H. Yamane, and H. Nojiri. 2004. Transcriptional regulation of the ant operon, encoding two-component anthranilate 1,2-dioxygenase, on the carbazole-degradative plasmid pCAR1 of Pseudomonas resinovorans strain CA10. J. Bacteriol. 186:6815-6823.
-
(2004)
J. Bacteriol
, vol.186
, pp. 6815-6823
-
-
Urata, M.1
Miyakoshi, M.2
Kai, S.3
Maeda, K.4
Habe, H.5
Omori, T.6
Yamane, H.7
Nojiri, H.8
-
64
-
-
33646562479
-
Plasmid pCAR3 contains multiple gene sets involved in the conversion of carbazole to anthranilate
-
Urata, M., H. Uchimura, H. Noguchi, T. Sakaguchi, T. Takemura K. Eto, H. Habe, T. Omori, H. Yamane, and H. Nojiri. 2006. Plasmid pCAR3 contains multiple gene sets involved in the conversion of carbazole to anthranilate. Appl. Environ. Microbiol. 72:3198-3205.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 3198-3205
-
-
Urata, M.1
Uchimura, H.2
Noguchi, H.3
Sakaguchi, T.4
Takemura, T.5
Eto, K.6
Habe, H.7
Omori, T.8
Yamane, H.9
Nojiri, H.10
-
65
-
-
6044272942
-
The completely sequenced plasmid pEST4011 contains a novel IncP1 backbone and a catabolic transposon harboring tfd genes for 2,4-dichlorophenoxyacetic acid degradation
-
Vedler, E., M. Vahter, and A. Heinaru. 2004. The completely sequenced plasmid pEST4011 contains a novel IncP1 backbone and a catabolic transposon harboring tfd genes for 2,4-dichlorophenoxyacetic acid degradation. J. Bacteriol. 186:7161-7174.
-
(2004)
J. Bacteriol
, vol.186
, pp. 7161-7174
-
-
Vedler, E.1
Vahter, M.2
Heinaru, A.3
-
66
-
-
0034613238
-
Versatile transcription of biphenyl catabolic bph operon in Pseudomonas pseudoalcaligenes KF707
-
Watanabe, T., R. Inoue, N. Kimura, and K. Furukawa. 2000. Versatile transcription of biphenyl catabolic bph operon in Pseudomonas pseudoalcaligenes KF707. J. Biol. Chem. 275:31016- 31023.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 31016-31023
-
-
Watanabe, T.1
Inoue, R.2
Kimura, N.3
Furukawa, K.4
-
67
-
-
0034764614
-
Fluorene degradation by Sphingomonas sp. LB126 proceeds through protocatechuic acid: A genetic analysis
-
Wattiau, P., L. Bastiaens, R. van Herwijnen, L. Daal, J. R. Parsons, M. E. Renard, D. Springael, and G. R. Cornelis. 2001. Fluorene degradation by Sphingomonas sp. LB126 proceeds through protocatechuic acid: a genetic analysis. Res. Microbiol. 152:861-872.
-
(2001)
Res. Microbiol
, vol.152
, pp. 861-872
-
-
Wattiau, P.1
Bastiaens, L.2
van Herwijnen, R.3
Daal, L.4
Parsons, J.R.5
Renard, M.E.6
Springael, D.7
Cornelis, G.R.8
-
68
-
-
2942543627
-
Genomics of catabolic plasmids
-
J.-L. Ramos ed, Kluwer Academic/Plenum Publishers, New York, NY
-
Williams, P. A., R. M. Jones, and G. Zylstra. 2004. Genomics of catabolic plasmids, p. 165-195. In J.-L. Ramos (ed.), Pseudomonas. Kluwer Academic/Plenum Publishers, New York, NY.
-
(2004)
Pseudomonas
, pp. 165-195
-
-
Williams, P.A.1
Jones, R.M.2
Zylstra, G.3
-
69
-
-
22544478427
-
Characterization of the Vibrio cholerae vceCAB multiple-drug resistance efflux operon in Escherichia coli
-
Woolley, R. C., G. Vediyappan, M. Anderson, M. Lackey, B. Ramasubramanian, B. Jiangping, T. Borisova, J. A. Colmer, A. N. Hamood, C. S. McVay, and J. A. Fralick. 2005. Characterization of the Vibrio cholerae vceCAB multiple-drug resistance efflux operon in Escherichia coli. J. Bacteriol. 187:5500-5503.
-
(2005)
J. Bacteriol
, vol.187
, pp. 5500-5503
-
-
Woolley, R.C.1
Vediyappan, G.2
Anderson, M.3
Lackey, M.4
Ramasubramanian, B.5
Jiangping, B.6
Borisova, T.7
Colmer, J.A.8
Hamood, A.N.9
McVay, C.S.10
Fralick, J.A.11
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