메뉴 건너뛰기




Volumn 257, Issue 2, 2006, Pages 243-252

Plasmid-encoded γ-hexachlorocyclohexane degradation genes and insertion sequences in Sphingobium francense (ex-Sphingomonas paucimobilis Sp+)

Author keywords

Adaptation; Genetic instability; Insertion sequences; Lindane; Plasmid; Sphingobium francense

Indexed keywords

LINDANE;

EID: 33645222793     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2006.00188.x     Document Type: Article
Times cited : (60)

References (41)
  • 1
    • 0033972854 scopus 로고    scopus 로고
    • Genetic variation molecular mechanisms and impact on microbial evolution
    • Arber W 2000 Genetic variation molecular mechanisms and impact on microbial evolution. FEMS Microbiol Rev 24 1 7.
    • (2000) FEMS Microbiol Rev , vol.24 , pp. 1-7
    • Arber W1
  • 2
    • 0031859323 scopus 로고    scopus 로고
    • Genetic analysis of dioxin dioxygenase of Sphingomonas sp. strain RW1 catabolic genes dispersed on the genome
    • Armengaud J Happe B Timmis KN 1998 Genetic analysis of dioxin dioxygenase of Sphingomonas sp. strain RW1 catabolic genes dispersed on the genome. J Bacteriol 180 3954 3966.
    • (1998) J Bacteriol , vol.180 , pp. 3954-3966
    • Armengaud J1    Happe, B.2    Timmis, K.N.3
  • 3
    • 0028008450 scopus 로고
    • Identification and characterization of a new plasmid carrying genes for degradation of 2,4-Dichlorophenoxyacetate from Pseudomonas cepacia CSV90
    • Bhat MA Tsuda M Horiike K Nozaki M Vaidyanathan CS Nakazawa T 1994 Identification and characterization of a new plasmid carrying genes for degradation of 2,4-Dichlorophenoxyacetate from Pseudomonas cepacia CSV90. Appl Environ Microbiol 60 307 312.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 307-312
    • Bhat M, A.1    Tsuda, M.2    Horiike, K.3    Nozaki, M.4    Vaidyanathan, C.S.5    Nakazawa, T.6
  • 4
    • 0032175395 scopus 로고    scopus 로고
    • Microbial dehalogenases enzymes recruited to convert xenobiotic substrates
    • Copley SD 1998 Microbial dehalogenases enzymes recruited to convert xenobiotic substrates. Curr Opin Chem Biol 2 613 617.
    • (1998) Curr Opin Chem Biol , vol.2 , pp. 613-617
    • Copley S, D.1
  • 5
    • 0032870855 scopus 로고    scopus 로고
    • Genetic exchange between bacteria in the environment
    • Davison J 1999 Genetic exchange between bacteria in the environment. Plasmid 42 73 91.
    • (1999) Plasmid , vol.42 , pp. 73-91
    • Davison J1
  • 6
    • 1842454814 scopus 로고    scopus 로고
    • Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis evidence for horizontal gene transfer
    • Dogra C Raina V Pal R Suar M Lal S Gartemann KH Holliger C van der Meer JR Lal R 2004 Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis evidence for horizontal gene transfer. J Bacteriol 186 2225 2235.
    • (2004) J Bacteriol , vol.186 , pp. 2225-2235
    • Dogra C1    Raina, V.2    Pal, R.3    Suar, M.4    Lal, S.5    Gartemann, K.H.6    Der Van, H.C.7    Meer, J.R.8    Lal, R.9
  • 7
    • 0018162579 scopus 로고
    • A rapid method for the identification of plasmid deoxyribonucleic acid in bacteria
    • Eckhardt T 1978 A rapid method for the identification of plasmid deoxyribonucleic acid in bacteria. Plasmid 1 584 588.
    • (1978) Plasmid , vol.1 , pp. 584-588
    • Eckhardt T1
  • 8
    • 0030897550 scopus 로고    scopus 로고
    • Plasmid-mediated mineralization of carbofuran by Sphingomonas sp. strain CF06
    • Feng X Ou LT Ogram A 1997 Plasmid-mediated mineralization of carbofuran by Sphingomonas sp. strain CF06. Appl Environ Microbiol 63 1332 1337.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 1332-1337
    • Feng X1    Ou, L.T.2    Ogram, A.3
  • 9
    • 0020465573 scopus 로고
    • Chromosomal location of a Bacillus subtilis DNA fragment uniquely transcribed by sigma-28-containing RNA polymerase
    • Ferrari FA Ferrari E Hoch JA 1982 Chromosomal location of a Bacillus subtilis DNA fragment uniquely transcribed by sigma-28-containing RNA polymerase. J Bacteriol 152 780 785.
    • (1982) J Bacteriol , vol.152 , pp. 780-785
    • Ferrari F, A.1    Ferrari, E.2    Hoch, J.A.3
  • 10
    • 0000527903 scopus 로고
    • Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans
    • Figurski DH Helinski DR 1979 Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc Natl Acad Sci 76 1648 1652.
    • (1979) Proc Natl Acad Sci , vol.76 , pp. 1648-1652
    • Figurski D, H.1    Helinski, D.R.2
  • 11
    • 0025348289 scopus 로고
    • Two plasmids other than the nodulation plasmid are necessary for formation of nitrogen fixing nodules in Rhizobium leguminosarum
    • Hynes MF McGregor NF 1990 Two plasmids other than the nodulation plasmid are necessary for formation of nitrogen fixing nodules in Rhizobium leguminosarum. Mol Microbiol 4 567 574.
    • (1990) Mol Microbiol , vol.4 , pp. 567-574
    • Hynes M, F.1    McGregor, N.F.2
  • 12
    • 0000396578 scopus 로고
    • Dehydrochlorination of γ-hexachlorocyclohexane (γ-BHC) by γ-BHC-assimilating Pseudomonas paucimobilis
    • Imai R Nagata Y Senoo K Wada H Fukuda M Takagi M Yano K 1989 Dehydrochlorination of γ-hexachlorocyclohexane (γ-BHC) by γ-BHC-assimilating Pseudomonas paucimobilis. Agric Biol Chem 53 2015 2017.
    • (1989) Agric Biol Chem , vol.53 , pp. 2015-2017
    • Imai R1    Nagata, Y.2    Senoo, K.3    Wada, H.4    Fukuda, M.5    Takagi, M.6    Yano, K.7
  • 13
    • 0025786069 scopus 로고
    • Molecular cloning of a Pseudomonas paucimobilis gene encoding a 17-kilodalton polypeptide that eliminates HCl molecules from γ-hexachlorocyclohexane
    • Imai R Nagata Y Fukuda M Takagi M Yano K 1991 Molecular cloning of a Pseudomonas paucimobilis gene encoding a 17-kilodalton polypeptide that eliminates HCl molecules from γ-hexachlorocyclohexane. J Bacteriol 173 6811 6819.
    • (1991) J Bacteriol , vol.173 , pp. 6811-6819
    • Imai R1    Nagata, Y.2    Fukuda, M.3    Takagi, M.4    Yano, K.5
  • 15
    • 0025800303 scopus 로고
    • Evidence of plasmid mediate dechlorinase activity in Pseudomonas sps
    • Johri S Qazi GN Chopra CL 1991 Evidence of plasmid mediate dechlorinase activity in Pseudomonas sps. J Biotechnol 20 73 82.
    • (1991) J Biotechnol , vol.20 , pp. 73-82
    • Johri S1    Qazi, G.N.2    Chopra, C.L.3
  • 17
    • 0031026361 scopus 로고    scopus 로고
    • The plasmid-located haloalkane dehalogenase gene from Rhodococcus rhodochrous NCIMB 13064
    • Kulakova AN Larkin MJ Kulakova LA 1997 The plasmid-located haloalkane dehalogenase gene from Rhodococcus rhodochrous NCIMB 13064. Microbiology 143 109 115.
    • (1997) Microbiology , vol.143 , pp. 109-115
    • Kulakova A, N.1    Larkin, M.J.2    Kulakova, L.A.3
  • 18
    • 0036952382 scopus 로고    scopus 로고
    • Cloning and characterization of lin genes responsible for the degradation of hexachlorocyclohexane isomers by Sphingomonas paucimobilis strain B90
    • Kumari R Subudhi S Suar M Dhingra G Raina V Dogra C Lal S Van der Meer JR Holliger C Lal R 2002 Cloning and characterization of lin genes responsible for the degradation of hexachlorocyclohexane isomers by Sphingomonas paucimobilis strain B90. Appl Environ Microbiol 68 6021 6028.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 6021-6028
    • Kumari R1    Subudhi, S.2    Suar, M.3    Dhingra, G.4    Raina, V.5    Dogra, C.6    Der Van, L.S.7    Meer, J.R.8    Holliger, C.9    Lal, R.10
  • 21
    • 0031895255 scopus 로고    scopus 로고
    • Cloning and sequencing of a 2,5-dichlorohydroquinone reductive dehalogenase gene whose product is involved in degradation of γ-hexachlorocyclohexane by Sphingomonas paucimobilis
    • Miyauchi K Suh SK Nagata Y Takagi M 1998 Cloning and sequencing of a 2,5-dichlorohydroquinone reductive dehalogenase gene whose product is involved in degradation of γ-hexachlorocyclohexane by Sphingomonas paucimobilis. J Bacteriol 180 1354 1359.
    • (1998) J Bacteriol , vol.180 , pp. 1354-1359
    • Miyauchi K1    Suh, S.K.2    Nagata, Y.3    Takagi, M.4
  • 22
    • 0032704711 scopus 로고    scopus 로고
    • Cloning and sequencing of a novel meta-cleavage dioxygenase gene whose product is involved in degradation of γ-hexachlorocyclohexane in Sphingomonas paucimobilis
    • Miyauchi K Adachi Y Nagata Y Takagi M 1999 Cloning and sequencing of a novel meta-cleavage dioxygenase gene whose product is involved in degradation of γ-hexachlorocyclohexane in Sphingomonas paucimobilis. J Bacteriol 181 6712 6719.
    • (1999) J Bacteriol , vol.181 , pp. 6712-6719
    • Miyauchi K1    Adachi, Y.2    Nagata, Y.3    Takagi, M.4
  • 23
    • 15244351021 scopus 로고    scopus 로고
    • Identification of insertion sequence from a gamma-hexachlorocyclohexane degrading bacterium, Sphingomonas paucimobilis UT26
    • Miyauchi K Fukuda M Tsuda M Takagi M Nagata Y 2005 Identification of insertion sequence from a gamma-hexachlorocyclohexane degrading bacterium, Sphingomonas paucimobilis UT26. Biosci Biotechnol Biochem 69 216 219.
    • (2005) Biosci Biotechnol Biochem , vol.69 , pp. 216-219
    • Miyauchi K1    Fukuda, M.2    Tsuda, M.3    Takagi, M.4    Nagata, Y.5
  • 24
    • 0035575802 scopus 로고    scopus 로고
    • Identification of protein fold and catalytic residues of γ-hexachlorocyclohexane dehydrochlorinase LinA
    • Nagata Y Mori K Takagi M Murzin AG Damborsky J 2001 Identification of protein fold and catalytic residues of γ-hexachlorocyclohexane dehydrochlorinase LinA. Proteins: Struct Funct Genet 45 471 477.
    • (2001) Proteins: Struct Funct Genet , vol.45 , pp. 471-477
    • Nagata Y1    Mori, K.2    Takagi, M.3    Murzin, A.G.4    Damborsky, J.5
  • 25
    • 0027436421 scopus 로고
    • Cloning and sequencing of a dehalogenase gene encoding an enzyme with hydrolase activity involved in the degradation of γ-hexachlorocyclohexane in Pseudomonas paucimobilis
    • Nagata Y Nariya T Ohtomo R Fukuda M Yano K Takagi M 1993 Cloning and sequencing of a dehalogenase gene encoding an enzyme with hydrolase activity involved in the degradation of γ-hexachlorocyclohexane in Pseudomonas paucimobilis. J Bacteriol 175 6403 6410.
    • (1993) J Bacteriol , vol.175 , pp. 6403-6410
    • Nagata Y1    Nariya, T.2    Ohtomo, R.3    Fukuda, M.4    Yano, K.5    Takagi, M.6
  • 26
    • 0028276471 scopus 로고
    • Cloning and sequencing of a 2, 5-dichloro-1, 4-diol, dehydrogenase gene involved in the degradation of γ-hexachlorocyclohexane in Pseudomonas paucimobilis
    • Nagata Y Ohtomo R Miyauchi K Fukuda M Yano K Takagi M 1994 Cloning and sequencing of a 2, 5-dichloro-1, 4-diol, dehydrogenase gene involved in the degradation of γ-hexachlorocyclohexane in Pseudomonas paucimobilis. J Bacteriol 176 3117 3125.
    • (1994) J Bacteriol , vol.176 , pp. 3117-3125
    • Nagata Y1    Ohtomo, R.2    Miyauchi, K.3    Fukuda, M.4    Yano, K.5    Takagi, M.6
  • 27
    • 0032913487 scopus 로고    scopus 로고
    • Rhodanobacter lindaniclasticus gen. nov., sp. nov., a lindane-degrading bacterium
    • Nalin R Simonet P Vogel TM Normand P 1999 Rhodanobacter lindaniclasticus gen. nov., sp. nov., a lindane-degrading bacterium. Int J Syst Bacteriol 49 19 23.
    • (1999) Int J Syst Bacteriol , vol.49 , pp. 19-23
    • Nalin R1    Simonet, P.2    Vogel, T.M.3    Normand, P.4
  • 28
    • 0033046674 scopus 로고    scopus 로고
    • The chlorocatechol-catabolic transposon TN5707 of Alcaligenes eutophus NH9, carrying a gene cluster highly homologous to that in the 1,2,4-trichlorobenzene-degrading bacterium Pseudomonas sp. strain P51, confers the ability to grow on 3-chlorobenzoate
    • Ogawa N Miyashita K 1999 The chlorocatechol-catabolic transposon TN5707 of Alcaligenes eutophus NH9, carrying a gene cluster highly homologous to that in the 1,2,4-trichlorobenzene-degrading bacterium Pseudomonas sp. strain P51, confers the ability to grow on 3-chlorobenzoate. Appl Environ Microbiol 65 724 731.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 724-731
    • Ogawa N1    Miyashita, K.2
  • 29
    • 26244458524 scopus 로고    scopus 로고
    • Hexachlorocyclohexane-degrading bacterial strains Sphingomonas paucimobilis B90A, UT26 and Sp+, having similar lin genes, represent three distinct species, Sphingobium indicum sp. nov., Sphingobium japonicum sp. nov. and Sphingobium francense sp. nov., and reclassification of [Sphingomonas] chungbukensis as Sphingobium chungbukense comb. nov
    • Pal R Bala S Dadhwal M et al 2005 Hexachlorocyclohexane-degrading bacterial strains Sphingomonas paucimobilis B90A, UT26 and Sp+, having similar lin genes, represent three distinct species, Sphingobium indicum sp. nov., Sphingobium japonicum sp. nov. and Sphingobium francense sp. nov., and reclassification of [Sphingomonas] chungbukensis as Sphingobium chungbukense comb. nov. Int J Syst Evol Microbiol 55 1965 1972.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 1965-1972
    • Pal R1    Bala, S.2    Dadhwal, M.3    Al, E.4
  • 30
    • 18044372094 scopus 로고    scopus 로고
    • Biodegradation of hexachlorocyclohexane (HCH) by microorganisms
    • Phillips TM Seech AG Lee H Trevors JT 2005 Biodegradation of hexachlorocyclohexane (HCH) by microorganisms. Biodegradation 16 363 392.
    • (2005) Biodegradation , vol.16 , pp. 363-392
    • Phillips T, M.1    Seech, A.G.2    Lee, H.3    Trevors, J.T.4
  • 31
    • 0034098678 scopus 로고    scopus 로고
    • Haloalkane-utilizing Rhodococcus strains isolated from geographically distinct locations possess a highly conserved gene cluster encoding haloalkane catabolism
    • Poelarends GJ Zandstra M Bosma T Kulakov LA Larkin MJ Marchesi JR Weightman AJ Janssen DB 2000 Haloalkane-utilizing Rhodococcus strains isolated from geographically distinct locations possess a highly conserved gene cluster encoding haloalkane catabolism. J Bacteriol 182 2725 2731.
    • (2000) J Bacteriol , vol.182 , pp. 2725-2731
    • Poelarends G, J.1    Zandstra, M.2    Bosma, T.3    Kulakov, L.A.4    Larkin, M.J.5    Marchesi, J.R.6    Weightman, A.J.7    Janssen, D.B.8
  • 32
    • 0025133035 scopus 로고
    • Degradation of alpha-, beta-, and gamma-hexachlorocyclohexane by a soil bacterium under aerobic conditions
    • Sahu SK Patnaik KK Sharmila M Sethunathan N 1990 Degradation of alpha-, beta-, and gamma-hexachlorocyclohexane by a soil bacterium under aerobic conditions. Appl Environ Microbiol 56 3620 3622.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 3620-3622
    • Sahu S, K.1    Patnaik, K.K.2    Sharmila, M.3    Sethunathan, N.4
  • 33
    • 0032566701 scopus 로고    scopus 로고
    • Cointegrase, a naturally occurring, truncated form of IS21 transposase, catalyzes replicon fusion rather than simple insertion of IS21
    • Schmid S Seitz T Haas D 1998 Cointegrase, a naturally occurring, truncated form of IS21 transposase, catalyzes replicon fusion rather than simple insertion of IS21. J Mol Biol 282 571 583.
    • (1998) J Mol Biol , vol.282 , pp. 571-583
    • Schmid S1    Seitz, T.2    Haas, D.3
  • 35
    • 0038559866 scopus 로고    scopus 로고
    • Transposon-like organization of the plasmid-borne organophosphate degradation (opd) gene cluster found in Flavobacterium sp
    • Siddavatam D Khajamohiddin S Manavathi B Pakala SB Merrick M 2003 Transposon-like organization of the plasmid-borne organophosphate degradation (opd) gene cluster found in Flavobacterium sp. Appl Environ Microbiol 69 2533 2539.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2533-2539
    • Siddavatam D1    Khajamohiddin, S.2    Manavathi, B.3    Pakala, S.B.4    Merrick, M.5
  • 36
    • 0032898995 scopus 로고    scopus 로고
    • Bacterial catabolic transposons
    • Tan HM 1999 Bacterial catabolic transposons. Appl Microbiol Biotechnol 51 1 12.
    • (1999) Appl Microbiol Biotechnol , vol.51 , pp. 1-12
    • Tan H, M.1
  • 37
    • 0025774284 scopus 로고
    • Involvement of a large plasmid in the degradation of 1,2-dichloroethane by Xanthobacter autotrophicus
    • Tardif G Greer CW Labbé D Lau PCK 1991 Involvement of a large plasmid in the degradation of 1,2-dichloroethane by Xanthobacter autotrophicus. Appl Environ Microbiol 57 1853 1857.
    • (1991) Appl Environ Microbiol , vol.57 , pp. 1853-1857
    • Tardif G1    Greer, C.W.2    Labbé, D.3    Lau, P.C.K.4
  • 38
    • 0026529669 scopus 로고
    • The dehalogenase gene dehI from Pseudomonas putida PP3 is carried on an unusual mobile genetic element designated DEH
    • Thomas AW Slater JH Weightman AJ 1992 The dehalogenase gene dehI from Pseudomonas putida PP3 is carried on an unusual mobile genetic element designated DEH. J Bacteriol 174 1932 1940.
    • (1992) J Bacteriol , vol.174 , pp. 1932-1940
    • Thomas A, W.1    Slater, J.H.2    Weightman, A.J.3
  • 40
    • 0002480530 scopus 로고
    • Changes in the Rhizobium meliloti genome and the ability to detect supercoiled plasmids during bacteroid development
    • Wheatcroft R McRae GD Miller RW 1990 Changes in the Rhizobium meliloti genome and the ability to detect supercoiled plasmids during bacteroid development. Mol Plant-Microbe Interact 3 9 17.
    • (1990) Mol Plant-Microbe Interact , vol.3 , pp. 9-17
    • Wheatcroft R1    McRae, G.D.2    Miller, R.W.3
  • 41
    • 0035861496 scopus 로고    scopus 로고
    • The genome of the natural genetic engineer Agrobacterium tumefaciens C58
    • Wood DW Setubal JC Kaul R et al 2001 The genome of the natural genetic engineer Agrobacterium tumefaciens C58. Science 294 2317 2323.
    • (2001) Science , vol.294 , pp. 2317-2323
    • Wood D, W.1    Setubal, J.C.2    Kaul, R.3    Al, E.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.