-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0028924342
-
A general method for detecting and sizing large plasmids
-
Barton, B. M., P. H. Gordon, and A. J. Zuccarelli. 1995. A general method for detecting and sizing large plasmids. Anal. Biochem. 226:235-240.
-
(1995)
Anal. Biochem.
, vol.226
, pp. 235-240
-
-
Barton, B.M.1
Gordon, P.H.2
Zuccarelli, A.J.3
-
3
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254.
-
(1976)
Anal. Biochem.
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
4
-
-
0033880003
-
Sequence analysis and initial characterization of two isozymes of hydroxylaminobenzene mutase from Pseudomonas pseudoalcaligenes JS45
-
Davis, J. K., G. C. Paoli, Z. He, L. J. Nadeau, C. C. Somerville, and J. C. Spain. 2000. Sequence analysis and initial characterization of two isozymes of hydroxylaminobenzene mutase from Pseudomonas pseudoalcaligenes JS45. Appl. Environ. Microbiol. 66:2965-2971.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 2965-2971
-
-
Davis, J.K.1
Paoli, G.C.2
He, Z.3
Nadeau, L.J.4
Somerville, C.C.5
Spain, J.C.6
-
5
-
-
0016156623
-
Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad
-
Dorn, E., M. Hellwig, W. Reineke, and H.-J. Knackmuss. 1974. Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad. Arch. Microbiol. 99:61-70.
-
(1974)
Arch. Microbiol.
, vol.99
, pp. 61-70
-
-
Dorn, E.1
Hellwig, M.2
Reineke, W.3
Knackmuss, H.-J.4
-
6
-
-
0034081372
-
Isolation and curing of the Klebsiella pneumoniae large indigenous plasmid using sodium dodecyl sulphate
-
El-Mansi, M., K. J. Anderson, C. A. Inche, L. K. Knowles, and D. J. Platt. 2000. Isolation and curing of the Klebsiella pneumoniae large indigenous plasmid using sodium dodecyl sulphate. Res. Microbiol. 151:201-208.
-
(2000)
Res. Microbiol.
, vol.151
, pp. 201-208
-
-
El-Mansi, M.1
Anderson, K.J.2
Inche, C.A.3
Knowles, L.K.4
Platt, D.J.5
-
7
-
-
0026759688
-
Novel degradative pathway of 4-nitrobenzoate in Comamonas acidovorans NBA-10
-
Groenewegen, P. E., P. Breeuwer, J. M. van Helvoort, A. A. Langenhoff, F. P. de Vries, and J. A. de Bont. 1992. Novel degradative pathway of 4-nitrobenzoate in Comamonas acidovorans NBA-10. J. Gen. Microbiol. 138:1599-1605.
-
(1992)
J. Gen. Microbiol.
, vol.138
, pp. 1599-1605
-
-
Groenewegen, P.E.1
Breeuwer, P.2
Van Helvoort, J.M.3
Langenhoff, A.A.4
De Vries, F.P.5
De Bont, J.A.6
-
8
-
-
0028022845
-
Biodegradation of 2-nitrotoluene by Pseudomonas sp. strain JS42
-
Haigler, B. E., W. H. Wallace, and J. C. Spain. 1994. Biodegradation of 2-nitrotoluene by Pseudomonas sp. strain JS42. Appl. Environ. Microbiol. 60:3466-3469.
-
(1994)
Appl. Environ. Microbiol.
, vol.60
, pp. 3466-3469
-
-
Haigler, B.E.1
Wallace, W.H.2
Spain, J.C.3
-
9
-
-
0034666543
-
A novel degradative pathway of 2-nitrobenzoate via 3-hydroxyanthranilate in Pseudomonas fluorescent strain KU-7
-
Hasegawa, Y., T. Muraki, T. Tokuyama, H. Iwaki, M. Tatsuno, and P. C. K. Lau. 2000. A novel degradative pathway of 2-nitrobenzoate via 3-hydroxyanthranilate in Pseudomonas fluorescent strain KU-7. FEMS Microbiol. Lett. 190:185-190.
-
(2000)
FEMS Microbiol. Lett.
, vol.190
, pp. 185-190
-
-
Hasegawa, Y.1
Muraki, T.2
Tokuyama, T.3
Iwaki, H.4
Tatsuno, M.5
Lau, P.C.K.6
-
10
-
-
0030833913
-
Studies of the catabolic pathways of degradation of nitrobenzene by Pseudomonas pseudoalcaligenes JS45: Removal of the amino group from 2-aminomuconic semialdehyde
-
He, Z., and J. C. Spain. 1997. Studies of the catabolic pathways of degradation of nitrobenzene by Pseudomonas pseudoalcaligenes JS45: removal of the amino group from 2-aminomuconic semialdehyde. Appl. Environ. Microbiol. 63:4839-4843.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4839-4843
-
-
He, Z.1
Spain, J.C.2
-
11
-
-
0031956099
-
A novel 2-aminomuconate deaminase in the nitrobenzene degradation pathway of Pseudomonas pseudoalcaligenes JS45
-
He, Z., and J. C. Spain. 1998. A novel 2-aminomuconate deaminase in the nitrobenzene degradation pathway of Pseudomonas pseudoalcaligenes JS45. J. Bacteriol. 180:2502-2506.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 2502-2506
-
-
He, Z.1
Spain, J.C.2
-
12
-
-
0032923747
-
Comparison of the downstream pathways for degradation of nitrobenzene by Pseudomonas pseudoalcaligenes JS45 (2-aminophenol pathway) and by Comamonas JS765 (catechol pathway)
-
He, Z., and J. C. Spain. 1999. Comparison of the downstream pathways for degradation of nitrobenzene by Pseudomonas pseudoalcaligenes JS45 (2-aminophenol pathway) and by Comamonas JS765 (catechol pathway). Arch. Microbiol. 171:309-316.
-
(1999)
Arch. Microbiol.
, vol.171
, pp. 309-316
-
-
He, Z.1
Spain, J.C.2
-
13
-
-
0031721043
-
Purification, characterization, and sequence analysis of 2-aminomuconic 6-semialdehyde dehydrogenase from Pseudomonas pseudoalcaligenes JS45
-
He, Z., J. K. Davis, and J. C. Spain. 1998. Purification, characterization, and sequence analysis of 2-aminomuconic 6-semialdehyde dehydrogenase from Pseudomonas pseudoalcaligenes JS45. J. Bacteriol. 180:4591-4595.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 4591-4595
-
-
He, Z.1
Davis, J.K.2
Spain, J.C.3
-
14
-
-
0033969462
-
Characterization of hydroxylaminobenzene mutase from pNBZ139 cloned from Pseudomonas pseudoalcaligenes JS45. A highly associated SDS-stable enzyme catalyzing an intramolecular transfer of hydroxy groups
-
He, Z., L. J. Nadeau, and J. C. Spain. 2000. Characterization of hydroxylaminobenzene mutase from pNBZ139 cloned from Pseudomonas pseudoalcaligenes JS45. A highly associated SDS-stable enzyme catalyzing an intramolecular transfer of hydroxy groups. Eur. J. Biochem. 267:1110-1116.
-
(2000)
Eur. J. Biochem.
, vol.267
, pp. 1110-1116
-
-
He, Z.1
Nadeau, L.J.2
Spain, J.C.3
-
15
-
-
0032914115
-
Initial reactions in the biodegradation of 1-chloro-4-nitrobenzene by a newly isolated bacterium, strain LW1
-
Katsivela, E., V. Wray, D. H. Pieper, and R. M. Wittich. 1999. Initial reactions in the biodegradation of 1-chloro-4-nitrobenzene by a newly isolated bacterium, strain LW1. Appl. Environ. Microbiol. 65:1405-1412.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1405-1412
-
-
Katsivela, E.1
Wray, V.2
Pieper, D.H.3
Wittich, R.M.4
-
16
-
-
0038377410
-
Expression of the nitroarene dioxygenase genes in Comamonas sp. strain JS765 and Acidovorax sp. strain JS42 is induced by multiple aromatic compounds
-
Lessner, D. J., R. E. Parales, S. Narayan, and D. T. Gibson. 2003. Expression of the nitroarene dioxygenase genes in Comamonas sp. strain JS765 and Acidovorax sp. strain JS42 is induced by multiple aromatic compounds. J. Bacteriol. 185:3895-3904.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 3895-3904
-
-
Lessner, D.J.1
Parales, R.E.2
Narayan, S.3
Gibson, D.T.4
-
17
-
-
0030207793
-
Degradation of 3-nitrophenol by Pseudomonas putida B2 occurs via 1,2,4-benzenetriol
-
Meulenberg, R., M. Pepi, and J. A. de Bont. 1996. Degradation of 3-nitrophenol by Pseudomonas putida B2 occurs via 1,2,4-benzenetriol. Biodegradation 7:303-311.
-
(1996)
Biodegradation
, vol.7
, pp. 303-311
-
-
Meulenberg, R.1
Pepi, M.2
De Bont, J.A.3
-
18
-
-
0037338581
-
Prokaryotic homologs of the eukaryotic 3-hydroxyanthranilate 3,4-dioxygenase and 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase in the 2-nitrobenzoate degradation pathway of Pseudomonas fluorescens strain KU-7
-
Muraki, T., M. Taki, Y. Hasegawa, H. Iwaki, and P. C. K. Lau. 2003. Prokaryotic homologs of the eukaryotic 3-hydroxyanthranilate 3,4-dioxygenase and 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase in the 2-nitrobenzoate degradation pathway of Pseudomonas fluorescens strain KU-7. Appl. Environ. Microbiol. 69:1564-1572.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 1564-1572
-
-
Muraki, T.1
Taki, M.2
Hasegawa, Y.3
Iwaki, H.4
Lau, P.C.K.5
-
19
-
-
0038559504
-
Bacterial conversion of hydroxylamino aromatic compounds by both lyase and mutase enzymes involves intramolecular transfer of hydroxyl groups
-
Nadeau, L. J., Z. He, and J. C. Spain. 2003. Bacterial conversion of hydroxylamino aromatic compounds by both lyase and mutase enzymes involves intramolecular transfer of hydroxyl groups. Appl. Environ. Microbiol. 69:2786-2793.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 2786-2793
-
-
Nadeau, L.J.1
He, Z.2
Spain, J.C.3
-
20
-
-
0029070669
-
Oxidative pathway for the biodegradation of nitrobenzene by Comamonas sp. strain JS765
-
Nishino, S. F., and J. C. Spain. 1995. Oxidative pathway for the biodegradation of nitrobenzene by Comamonas sp. strain JS765. Appl. Environ. Microbiol. 61:2308-2313.
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 2308-2313
-
-
Nishino, S.F.1
Spain, J.C.2
-
21
-
-
0034061462
-
Aerobic degradation of dinitrotoluenes and pathway for bacterial degradation of 2,6-dinitrotoluene
-
Nishino, S. F., G. C. Paoli, and J. C. Spain. 2000. Aerobic degradation of dinitrotoluenes and pathway for bacterial degradation of 2,6-dinitrotoluene. Appl. Environ. Microbiol. 66:2139-2147.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 2139-2147
-
-
Nishino, S.F.1
Paoli, G.C.2
Spain, J.C.3
-
22
-
-
0027251005
-
Degradation of nitrobenzene by a Pseudomonas pseudoalcaligenes
-
Nishino, S. F., and J. C. Spain. 1993. Degradation of nitrobenzene by a Pseudomonas pseudoalcaligenes. Appl. Environ. Microbiol. 59:2520-2525.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 2520-2525
-
-
Nishino, S.F.1
Spain, J.C.2
-
23
-
-
0033966167
-
Identification and characterization of the nitrobenzene catabolic plasmids pNB1 and pNB2 in Pseudomonas putida HS12
-
Park, H.-S., and H.-S. Kim. 2000. Identification and characterization of the nitrobenzene catabolic plasmids pNB1 and pNB2 in Pseudomonas putida HS12. J. Bacteriol. 182:573-580.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 573-580
-
-
Park, H.-S.1
Kim, H.-S.2
-
24
-
-
0034888748
-
Genetic and structural organization of the aminophenol catabolic operon and its implication for evolutionary process
-
Park, H. S., and H. S. Kim. 2001. Genetic and structural organization of the aminophenol catabolic operon and its implication for evolutionary process. J. Bacteriol. 183:5074-5081.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 5074-5081
-
-
Park, H.S.1
Kim, H.S.2
-
25
-
-
0032987151
-
Degradation of chloronitrobenzenes by a coculture of Pseudomonas putida and a Rhodococcus sp
-
Park, H. S., S. J. Lim, Y. K. Chang, A. G. Linvingston, and H. S. Kim. 1999. Degradation of chloronitrobenzenes by a coculture of Pseudomonas putida and a Rhodococcus sp. Appl. Environ. Microbiol. 65:1083-1091.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1083-1091
-
-
Park, H.S.1
Lim, S.J.2
Chang, Y.K.3
Linvingston, A.G.4
Kim, H.S.5
-
26
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
27
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(1989)
Molecular Cloning: A Laboratory Manual, 2nd Ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
28
-
-
0031945079
-
Isolation of stable bacterial artificial chromosome DNA using a modified alkaline lysis method
-
Sinnett, D., C. Richer, and A. Baccichet. 1998. Isolation of stable bacterial artificial chromosome DNA using a modified alkaline lysis method. BioTechniques 24:752-754.
-
(1998)
BioTechniques
, vol.24
, pp. 752-754
-
-
Sinnett, D.1
Richer, C.2
Baccichet, A.3
-
29
-
-
0029007418
-
Purification and characterization of nitrobenzene nitroreductase from Pseudomonas pseudoalcaligenes JS45
-
Somerville, C. C., S. F. Nishino, and J. C. Spain. 1995. Purification and characterization of nitrobenzene nitroreductase from Pseudomonas pseudoalcaligenes JS45. J. Bacteriol. 177:3837-3842.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 3837-3842
-
-
Somerville, C.C.1
Nishino, S.F.2
Spain, J.C.3
-
30
-
-
0028841595
-
Biodegradation of nitroaromatic compounds
-
Spain, J. C. 1995. Biodegradation of nitroaromatic compounds. Annu. Rev. Microbiol. 49:523-555.
-
(1995)
Annu. Rev. Microbiol.
, vol.49
, pp. 523-555
-
-
Spain, J.C.1
-
31
-
-
0025777419
-
Pathway for biodegradation of para-nitrophenol in a Moraxella sp
-
Spain, J. C., and D. T. Gibson. 1991. Pathway for biodegradation of para-nitrophenol in a Moraxella sp. Appl. Environ. Microbiol. 57:812-819.
-
(1991)
Appl. Environ. Microbiol.
, vol.57
, pp. 812-819
-
-
Spain, J.C.1
Gibson, D.T.2
-
32
-
-
0026006586
-
Biodegradation of 2,4-dinitrotoluene by a Pseudomonas sp
-
Spanggord, R. J., J. C. Spain, S. F. Nishino, and K. E. Mortelmans. 1991. Biodegradation of 2,4-dinitrotoluene by a Pseudomonas sp. Appl. Environ. Microbiol. 57:3200-3205.
-
(1991)
Appl. Environ. Microbiol.
, vol.57
, pp. 3200-3205
-
-
Spanggord, R.J.1
Spain, J.C.2
Nishino, S.F.3
Mortelmans, K.E.4
-
33
-
-
0033775055
-
Complete nucleotide sequence and functional analysis of the genes for 2-aminophenol metabolism from Pseudomonas sp. AP-3
-
Takenaka, S., S. Murakami, Y.-J. Kim, and K. Aoki. 2000. Complete nucleotide sequence and functional analysis of the genes for 2-aminophenol metabolism from Pseudomonas sp. AP-3. Arch. Microbiol. 174:265-272.
-
(2000)
Arch. Microbiol.
, vol.174
, pp. 265-272
-
-
Takenaka, S.1
Murakami, S.2
Kim, Y.-J.3
Aoki, K.4
-
34
-
-
0031867305
-
Metabolism of 2-aminophenol by Pseudomonas sp. AP-3: Modified meta-cleavage pathway
-
Takenaka, S., S. Murakami, R. Shinke, and K. Aoki. 1998. Metabolism of 2-aminophenol by Pseudomonas sp. AP-3: modified meta-cleavage pathway. Arch. Microbiol. 170:132-137.
-
(1998)
Arch. Microbiol.
, vol.170
, pp. 132-137
-
-
Takenaka, S.1
Murakami, S.2
Shinke, R.3
Aoki, K.4
-
35
-
-
0023944255
-
Enzymatic dehalogenation of chlorinated nitroaromatic compounds
-
Thiele, J., R. Mueller, and F. Lingens. 1988. Enzymatic dehalogenation of chlorinated nitroaromatic compounds. Appl. Environ. Microbiol. 54:1199-1202.
-
(1988)
Appl. Environ. Microbiol.
, vol.54
, pp. 1199-1202
-
-
Thiele, J.1
Mueller, R.2
Lingens, F.3
-
36
-
-
0024097763
-
A precaution when preparing very large plasmids by alkaline lysis procedure
-
Thomas, N. R., S. Koshy, M. Simsek, and A. K. Abraham. 1988. A precaution when preparing very large plasmids by alkaline lysis procedure. Appl. Biochem. Biotechnol. 10:402-407.
-
(1988)
Appl. Biochem. Biotechnol.
, vol.10
, pp. 402-407
-
-
Thomas, N.R.1
Koshy, S.2
Simsek, M.3
Abraham, A.K.4
-
37
-
-
0031574072
-
The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
38
-
-
33644956942
-
Characterization of p-chloronitrobenzene-degrading Comamonas CNB-1 and its degradation of p-chloronitrobenzene
-
Wu, J.-F., X.-H. Shen, Y.-G. Zhou, and S.-J. Liu. 2004. Characterization of p-chloronitrobenzene-degrading Comamonas CNB-1 and its degradation of p-chloronitrobenzene. Acta Microbiol. Sin. 44:8-12.
-
(2004)
Acta Microbiol. Sin.
, vol.44
, pp. 8-12
-
-
Wu, J.-F.1
Shen, X.-H.2
Zhou, Y.-G.3
Liu, S.-J.4
-
39
-
-
12444261679
-
A novel 2-aminophenol 1,6-dioxygenase involved in the degradation of p-chloronitrobenzene by Comamonas sp. strain CNB-1: Purification, properties, genetic cloning and expression in Escherichia coli
-
Wu, J.-F., C.-W. Sun, C.-Y. Jiang, Z.-P. Liu, and S.-J. Liu. 2005. A novel 2-aminophenol 1,6-dioxygenase involved in the degradation of p-chloronitrobenzene by Comamonas sp. strain CNB-1: purification, properties, genetic cloning and expression in Escherichia coli. Arch. Microbiol. 183:1-8.
-
(2005)
Arch. Microbiol.
, vol.183
, pp. 1-8
-
-
Wu, J.-F.1
Sun, C.-W.2
Jiang, C.-Y.3
Liu, Z.-P.4
Liu, S.-J.5
-
40
-
-
33845470663
-
Degradation of ortho-nitrophenol and meta-nitrophenol by a Pseudomonas putida
-
Zeyer, J., and P. C. Kearney. 1984. Degradation of ortho-nitrophenol and meta-nitrophenol by a Pseudomonas putida. J. Agric. Food Chem. 32:238-242.
-
(1984)
J. Agric. Food Chem.
, vol.32
, pp. 238-242
-
-
Zeyer, J.1
Kearney, P.C.2
|