Effect of dissemination of 2,4-dichlorophenoxyacetic acid (2,4-D) degradation plasmids on 2,4-d degradation and on bacterial community structure in two different soil horizons

Applied and Environmental Microbiology

Volumn 66, Issue 8, 2000, Pages 3297-3304

  Dejonghe, W ^a   Goris, J ^a   Fantroussi, S E ^a   Hofte, M ^a   Vos, P D ^a   Verstraete, W ^a   Top, E M ^a  

^a GHENT UNIVERSITY   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

2,4 DICHLOROPHENOXYACETIC ACID;

BACTERIUM; BIODEGRADATION; COMMUNITY STRUCTURE; HERBICIDE; POLLUTION EFFECT; SOIL HORIZON;

ARTICLE; BACTERIAL COLONIZATION; DEGRADATION; DENATURING GRADIENT GEL ELECTROPHORESIS; NONHUMAN; PLASMID; PSEUDOMONAS PUTIDA; SOIL POLLUTION; SOIL TREATMENT;

2,4-DICHLOROPHENOXYACETIC ACID; BACTERIA; BIODEGRADATION, ENVIRONMENTAL; CONJUGATION, GENETIC; ECOSYSTEM; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GENE TRANSFER TECHNIQUES; GENES, RRNA; MOLECULAR SEQUENCE DATA; PLASMIDS; PSEUDOMONAS PUTIDA; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY; SOIL POLLUTANTS;

BACTERIA (MICROORGANISMS); PSEUDOMONAS; PSEUDOMONAS PUTIDA;

EID: 0033861767     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.66.8.3297-3304.2000     Document Type: Article

References (60)

1. Application of bacteria in soils: Problems and pitfalls
2. Inoculation
3. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
4. Phylogenetic identification and in situ detection of individual microbial cells without cultivation
5. Microbiological breakdown of herbicides in soils
6. Accelerated parathion degradation in soil inoculated with acclimated bacteria under field conditions
7. Identification and characterization of a new plasmid carrying genes for degradation of 2,4-dichlorophenoxyacetate from Pseudomonas cepacia CSV90
8. Survival of Alcaligenes xylosoxidans degrading 2,2-dichloropropionate and horizontal transfer of its halidohydrolase gene in a soil microcosm
9. Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level
10. Detoxification of isopropyl N-phenylcarbamate (IPC) and isopropyl N-3-chlorophenylcarbamate (CIPC) in soil, and isolation of IPC-metabolizing bacteria
11. Rhizosphere effects on biodegradation of 2,5-dichlorobenzoate by a bioluminescent strain of root-colonizing Pseudomonas fluorescens
12. Earthworm egg capsules as vectors for the environmental introduction of biodegradative bacteria
13. Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in gram-negative eubacteria
14. Transfer of the catabolic plasmid RP4::Tn4371 to indigenous soil bacteria and its effect on respiration and biphenyl breakdown
15. Gene transfer of Alcaligenes eutrophus JMP134 plasmid pJP4 to indigenous soil recipients
16. Properties of six pesticide degradation plasmids isolated from Alcaligenes paradoxus and Alcaligenes eutrophus
17. Horizontal gene transfer among bacteria in terrestrial and aquatic habitats as assessed by microcosm and field studies
18. Pilot-scale evaluation of bioaugmentation for in-situ remediation of a carbon tetrachloride-contaminated aquifer
19. Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community
20. Introduction and PCR detection of Desulfomonile tiedjei in soil microcosms
21. Bioaugmentation of a soil bioreactor designed for pilot-scale anaerobic bioremediation studies
22. Effect of phenylurea herbicides on soil microbial communities estimated by analysis of 16S rRNA gene fingerprints and community-level physiological profiles
23. Replication of an origin containing derivative of plasmid RK2 dependent on a plasmid function provided in trans
24. Degradation of pesticides in subsurface soils, unsaturated zonea review of methods and results
25. Reasons for possible failure of inoculation to enhance biodegradation
26. Manure enhances plasmid mobilization and survival of Pseudomonas putida introduced into field soil
27. Spread of IncP plasmids in environment: A reality?
28. Studies on transformation of Escherichia coli with plasmids
29. Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria
30. Isolation and screening of plasmids from the epilithon which mobilize recombinant plasmid pD10
31. Gene transfer in soil systems using microcosms
32. Rapid procedure for detection and isolation of large and small plasmids
33. Detoxification of 2,4,5-trichlorophenoxyacetic acid from contaminated soil by Pseudomonas cepacia
34. Plasmids pJP4 and r68.45 can be transferred between populations of Bradyrhizobia in nonsterile soil
35. Indicator media for microorganisms degrading chlorinated pesticides
36. Characterization of a new 2,4-dichlorophenoxyacetic-acid degrading plasmid pEST4011: Physical map and localization of catabolic genes
37. Evidence for acquisition in nature of a chromosomal 2,4-dichlorophenoxyacetic acid/α-ketoglutarate dioxygenase gene by different Burkholderia spp.
38. Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pasture
39. Conjugation-mediated gene transfer in bacterial strains to be used for bioremediation
40. Profiling of complex microbial populations using denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16s rRNA
41. Frequency of horizontal gene transfer of a large catabolic plasmid (pJP4) in soil
42. Detection and characterization of plasmid pJP4 transfer to indigenous soil bacteria
43. Sequence heterogeneities of genes encoding 16s RNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
44. Methods for studying soil microorganisms
45. Clostridium paradoxum DSM 7308T contains multiple 16S rRNA genes with heterogeneous intervening sequences
46. Inoculum size as a factor limiting success of inoculation for biodegradation
47. The aerobic pseudomonads: A taxonomic study
48. Fate of a metal-resistant inoculum in contaminated and pristine soils assessed by denaturing gradient gel electrophoresis
49. Characterization of a chromosomally encoded 2,4-dichlorophenoxyacetic acid/α-ketoglutarate dioxygenase from Burkholderia sp. strain RASC
50. Gene escape model: Transfer of heavy metal resistance genes from Escherichia coli to Alcaligenes eutrophus on agar plates and in soil samples
51. Characterization of diverse 2,4-dichlorophenoxyacetic acid-degradative plasmids isolated from soil by complementation
52. Capture of a catabolic plasmid that only encodes a 2,4-dichlorophenoxyacetic acid:α-ketoglutaric acid dioxygenase (TfdA) by genetic complementation
53. Enhancement of 2,4-dichlorophenoxyacetic acid (2,4-D) degradation in soil by dissemination of catabolic plasmids
54. Methane oxidation as a method to evaluate the removal of 2,4-dichlo-rophenoxyacetic acid (2,4-D) from soil by plasmid mediated bioaugmentation
55. The metabolic pathway of 2,4-dichlorophenoxyacetic acid degradation involves different families of tfdA and tfdB genes according to PCR-RFLP analysis
56. Methods for the introduction of bacteria in soil: A review
57. Fate and activity of microorganisms introduced into soil
58. Soil depth and temperature effects on microbial degradation of 2,4-D