Genomic island excisions in bordetella petrii

BMC Microbiology

Volumn 9, Issue , 2009, Pages

  Lechner, Melanie ^a   Schmitt, Karin ^a   Bauer, Susanne ^a   Hot, David ^b   Hubans, Christine ^b   Levillain, Erwan ^b   Locht, Camille ^b   Lemoine, Yves ^b   Gross, Roy ^a  

^a UNIVERSITY OF WÜRZBURG   (Germany)

^b INSTITUT PASTEUR DE LILLE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; HEAVY METAL; TETRACYCLINE; BACTERIAL DNA;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM COLONY; BACTERIUM CULTURE; BORDETELLA; BORDETELLA PETRII; CHROMOSOME; CONTROLLED STUDY; DETOXIFICATION; GENE SEQUENCE; GENE STRUCTURE; GENOME; GENOMIC ISLAND; HORIZONTAL GENE TRANSFER; IN VITRO SELECTION; IN VITRO STUDY; NONHUMAN; PHENOTYPE; PHENOTYPIC VARIATION; PSEUDOMONAS; BACTERIAL CHROMOSOME; DNA MICROARRAY; DNA SEQUENCE; GENETICS; GENOMIC INSTABILITY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; TRANSPOSON;

BACTERIA (MICROORGANISMS); BORDETELLA; BORDETELLA BRONCHISEPTICA; BORDETELLA PETRII; PSEUDOMONAS;

BASE SEQUENCE; BORDETELLA; CHROMOSOMES, BACTERIAL; DNA TRANSPOSABLE ELEMENTS; DNA, BACTERIAL; GENE TRANSFER, HORIZONTAL; GENOME, BACTERIAL; GENOMIC INSTABILITY; GENOMIC ISLANDS; MOLECULAR SEQUENCE DATA; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHENOTYPE; SEQUENCE ANALYSIS, DNA;

EID: 68549135026     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-9-141     Document Type: Article

References (28)

1. Horizontal gene transfer, genome innovation and evolution. JP Gogarten JP Townsend, Nat Rev Microbiol 2005 3 679 687 10.1038/nrmicro1204 16138096 (Pubitemid 41195085)
2. Genomic islands: tools of bacterial horizontal gene transfer and evolution. M Juhas JR van der Meer M Gaillard RM Harding DW Hood DW Crook, FEMS Microbiol Rev 2009 33 376 393 19178566 10.1111/j.1574-6976.2008.00136.x
3. Genomic islands in pathogenic and environmental microorganisms. U Dobrindt B Hochhut U Hentschel J Hacker, Nat Rev Microbiol 2004 2 414 424 10.1038/nrmicro884 15100694 (Pubitemid 39490120)
4. Molecular pathogenesis, epidemiology, and clinical manifestations of respiratory infections due to Bordetella pertussis and other Bordetella subspecies. S Mattoo JD Cherry, Clin Microbiol Rev 2005 18 326 382 15831828 10.1128/CMR.18.2.326-382.2005 (Pubitemid 40548297)
5. Bordetella petrii sp. nov., isolated from an anaerobic bioreactor, and emended description of the genus Bordetella. F von Wintzingerode A Schattke RA Siddiqui U Rösick UB Göbel R Gross, Int J Syst Evol Microbiol 2001 51 1257 1265 11491321
6. Evolutionary trends in the genus Bordetella. G Gerlach F von Wintzingerode B Middendorf R Gross, Microbes Infect 2001 3 61 72 10.1016/S1286-4579(00)01353-8 11226855 (Pubitemid 32172041)
7. Bioremediation of toluene and naphthalene: development and validation of a GC-FID method for their monitoring. F Bianchi M Careri L Mustat A Malcevschi M Musci, Ann Chim 2005 95 515 524 10.1002/adic.200590061 16235785 (Pubitemid 41368016)
8. Isolation and characterization of 1,2,4-trichlorobenzene mineralizing Bordetella sp. and its bioremediation potential in soil. F Wang S Grundmann M Schmid U Dörfler S Roherer J Charles Munch A Hartmann X Jiang R Schroll, Chemosphere 2007 67 896 902 10.1016/j.chemosphere.2006.11.019 17204305 (Pubitemid 46123462)
9. Bordetella petrii clinical isolate. NK Fry J Duncan H Malnick M Warner AJ Smith MS Jackson A Ayoub, Emerg Infect Dis 2005 11 1131 1133 16022798
10. Bordetella petrii from a clinical sample in Australia: isolation and molecular identification. D Stark LA Riley J Harkness D Marriott, J Med Microbiol 2007 56 435 437 10.1099/jmm.0.46976-0 17314377 (Pubitemid 46363991)
11. Identification of Bordetella spp. in respiratory specimens from individuals with cystic fibrosis. T Spilker AA Liwienski JJ LiPuma, Clin Microbiol Infect 2008 14 504 506 10.1111/j.1469-0691.2008.01968.x 18325036
12. Characterization of a highly conserved island in the otherwise divergent Bordetella holmesii and Bordetella pertussis genomes. DA Diavatopoulos CA Cummings HG van der Heide M van Gent S Liew DA Relman FR Mooi, J Bacteriol 2006 188 8385 8394 17041054 10.1128/JB.01081-06 (Pubitemid 44894038)
13. Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. J Parkhill M Sebaihia A Preston LD Murphy N Thomson DE Harris MT Holden CM Churcher SD Bentley KL Mungall, Nat Genet 2003 35 32 40 10.1038/ng1227 12910271 (Pubitemid 37048593)
14. The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. R Gross CA Guzman M Sebaihia VA dos Santos DH Pieper R Koebnik M Lechner D Bartels J Buhrmester JV Choudhuri T Ebensen, BMC Genomics 2008 9 449 18826580 10.1186/1471-2164-9-449
15. The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties. M Gaillard T Vallaeys FJ Vorhölter M Minoia C Werlen V Sentchilo A Pühler JR van der Meer, J Bacteriol 2006 188 1999 2013 16484212 10.1128/JB.188.5.1999-2013.2006 (Pubitemid 43346880)
16. Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B. 13. V Sentchilo K Czechowska N Pradervand M Minoia R Miyazaki JR van der Meer, Mol Microbiol 2009 72 1293 1306 10.1111/j.1365-2958.2009.06726.x 19432799
17. The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn4371, a member of a new family of genomic islands related to IncP and Ti plasmids. A Toussaint C Merlin S Monchy MA Benotmane R Leplae M Mergeay D Springael, Appl Environ Microbiol. 2003 69 8 4837 4845 10.1128/AEM.69.8.4837-4845.2003 12902278 (Pubitemid 36992948)
18. Long-term survival of Bordetella bronchiseptica in lakewater and in buffered saline without added nutrients. JF Porter AC Wardlaw, FEMS Microbiol Lett 1993 110 33 36 10.1111/j.1574-6968.1993.tb06291.x 8319892
19. The ICESt1 element of Streptococcus thermophilus belongs to a large family of integrative and conjugative elements that exchange modules and change their specificity of integration. V Burrus G Pavlovic B Decaris G Guédon, Plasmid 2002 48 77 97 10.1016/S0147-619X(02)00102-6 12383726 (Pubitemid 35300800)
20. Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1. M Gaillard N Pernet C Vogne O Hagenbüchle JR van der Meer, Proc Natl Acad Sci USA 2008 105 7058 7063 18448680 10.1073/pnas.0801269105 (Pubitemid 351754529)
21. The lipopolysaccharide of Bordetella bronchiseptica acts as a protective shield against antimicrobial peptides. A Banemann H Deppisch R Gross, Infect Immun 1998 66 5607 5612 9826332
22. Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. Strain B13. R Ravatn S Studer D Springael AJ Zehnder JR van der Meer, J Bacteriol 1998 180 4360 4369 9721270
23. Molecular evolution and host adaptation of Bordetella spp.: phylogenetic analysis using multilocus enzyme electrophoresis and typing with three insertion sequences. A van der Zee F Mooi J Van Embden J Musser, J Bacteriol 1997 179 6609 6617 9352907
24. Replacement of adenylate cyclase toxin in a lineage of Bordetella bronchiseptica. AM Buboltz TL Nicholson MR Parette SE Hester J Parkhill ET Harvill, J Bacteriol 2008 190 5502 5511 18556799 10.1128/JB.00226-08
25. Phase variants of Bordetella bronchiseptica arise by spontaneous deletions in the vir locus. DM Monack B Arico R Rappuoli S Falkow, Mol Microbiol 1989 3 1719 1728 10.1111/j.1365-2958.1989.tb00157.x 2560120 (Pubitemid 20023250)
26. Positive regulation of pertussis toxin expression. R Gross R Rappuoli, Proc Natl Acad Sci USA 1988 85 3913 3917 2897691 10.1073/pnas.85.11.3913 (Pubitemid 18160641)
27. Design of oligonucleotide probes for DNA microarrays using a thermodynamic approach. JM Rouillard M Zuker E Gulari, Nucleic Acids Res 2003 31 3057 3062 12799432 10.1093/nar/gkg426 (Pubitemid 37441764)
28. Instability of pathogenicity islands in uropathogenic Escherichia coli 536. B Middendorf B Hochhut K Leipold U Dobrindt G Blum-Oehler J Hacker, J Bacteriol 2004 186 3086 3096 15126470 10.1128/JB.186.10.3086-3096.2004 (Pubitemid 38609752)