-
1
-
-
84880858205
-
Single residues dictate the co-evolution of dual esterases: MCP hydrolases from the alpha/beta hydrolase family
-
Alcaide, M., Tornes, J., Stogios, P.J., Xu, X., Gertler, C., Di Leo, R., etal. (2013) Single residues dictate the co-evolution of dual esterases: MCP hydrolases from the alpha/beta hydrolase family. Biochem J 454: 157-166.
-
(2013)
Biochem J
, vol.454
, pp. 157-166
-
-
Alcaide, M.1
Tornes, J.2
Stogios, P.J.3
Xu, X.4
Gertler, C.5
Di Leo, R.6
-
2
-
-
33745454125
-
Synthetic biology: new engineering rules for an emerging discipline
-
2006. 0028.
-
Andrianantoandro, E., Basu, S., Karig, D.K., and Weiss, R. (2006) Synthetic biology: new engineering rules for an emerging discipline. Mol Syst Biol 2: 2006. 0028.
-
(2006)
Mol Syst Biol
, vol.2
-
-
Andrianantoandro, E.1
Basu, S.2
Karig, D.K.3
Weiss, R.4
-
3
-
-
46949110597
-
Setting the standard in synthetic biology
-
Arkin, A. (2008) Setting the standard in synthetic biology. Nat Biotechnol 26: 771-774.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 771-774
-
-
Arkin, A.1
-
4
-
-
39249083636
-
Microbial carbohydrate esterases in cold adapted environments
-
Aurilia, V., Parracino, A., and D'Auria, S. (2008) Microbial carbohydrate esterases in cold adapted environments. Gene 410: 234-240.
-
(2008)
Gene
, vol.410
, pp. 234-240
-
-
Aurilia, V.1
Parracino, A.2
D'Auria, S.3
-
5
-
-
77954639120
-
Homologues of nitrite reductases in ammonia-oxidizing archaea: diversity and genomic context
-
Bartossek, R., Nicol, G.W., Lanzen, A., Klenk, H.P., and Schleper, C. (2010) Homologues of nitrite reductases in ammonia-oxidizing archaea: diversity and genomic context. Environ Microbiol 12: 1075-1088.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1075-1088
-
-
Bartossek, R.1
Nicol, G.W.2
Lanzen, A.3
Klenk, H.P.4
Schleper, C.5
-
6
-
-
77956580439
-
Diversity of glycosyl hydrolases from cellulose-depleting communities enriched from casts of two earthworm species
-
Beloqui, A., Nechitaylo, T.Y., Lopez-Cortes, N., Ghazi, A., Guazzaroni, M.E., Polaina, J., etal. (2010) Diversity of glycosyl hydrolases from cellulose-depleting communities enriched from casts of two earthworm species. Appl Environ Microbiol 76: 5934-5946.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 5934-5946
-
-
Beloqui, A.1
Nechitaylo, T.Y.2
Lopez-Cortes, N.3
Ghazi, A.4
Guazzaroni, M.E.5
Polaina, J.6
-
7
-
-
84874573715
-
Isolation of cold-active, acidic endocellulase from Ladakh soil by functional metagenomics
-
Bhat, A., Riyaz-Ul-Hassan, S., Ahmad, N., Srivastava, N., and Johri, S. (2013) Isolation of cold-active, acidic endocellulase from Ladakh soil by functional metagenomics. Extremophiles 17: 229-239.
-
(2013)
Extremophiles
, vol.17
, pp. 229-239
-
-
Bhat, A.1
Riyaz-Ul-Hassan, S.2
Ahmad, N.3
Srivastava, N.4
Johri, S.5
-
8
-
-
0034253208
-
Cellulases and related enzymes in biotechnology
-
Bhat, M.K. (2000) Cellulases and related enzymes in biotechnology. Biotechnol Adv 18: 355-383.
-
(2000)
Biotechnol Adv
, vol.18
, pp. 355-383
-
-
Bhat, M.K.1
-
9
-
-
80053926913
-
Toward rational design of bacterial genomes
-
Cambray, G., Mutalik, V.K., and Arkin, A.P. (2011) Toward rational design of bacterial genomes. Curr Opin Microbiol 14: 624-630.
-
(2011)
Curr Opin Microbiol
, vol.14
, pp. 624-630
-
-
Cambray, G.1
Mutalik, V.K.2
Arkin, A.P.3
-
10
-
-
46949091517
-
Refinement and standardization of synthetic biological parts and devices
-
Canton, B., Labno, A., and Endy, D. (2008) Refinement and standardization of synthetic biological parts and devices. Nat Biotechnol 26: 787-793.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 787-793
-
-
Canton, B.1
Labno, A.2
Endy, D.3
-
11
-
-
84862239638
-
A highly efficient beta-glucosidase from the buffalo rumen fungus Neocallimastix patriciarum W5
-
Chen, H.L., Chen, Y.C., Lu, M.Y., Chang, J.J., Wang, H.T., Ke, H.M., etal. (2012) A highly efficient beta-glucosidase from the buffalo rumen fungus Neocallimastix patriciarum W5. Biotechnol Biofuels 5: 24.
-
(2012)
Biotechnol Biofuels
, vol.5
, pp. 24
-
-
Chen, H.L.1
Chen, Y.C.2
Lu, M.Y.3
Chang, J.J.4
Wang, H.T.5
Ke, H.M.6
-
12
-
-
72149119473
-
Lysine racemase: a novel non-antibiotic selectable marker for plant transformation
-
Chen, I.C., Thiruvengadam, V., Lin, W.D., Chang, H.H., and Hsu, W.H. (2010) Lysine racemase: a novel non-antibiotic selectable marker for plant transformation. Plant Mol Biol 72: 153-169.
-
(2010)
Plant Mol Biol
, vol.72
, pp. 153-169
-
-
Chen, I.C.1
Thiruvengadam, V.2
Lin, W.D.3
Chang, H.H.4
Hsu, W.H.5
-
13
-
-
70350710117
-
Identification and molecular modeling of a novel lipase from an Antarctic soil metagenomic library
-
Cieslinski, H., Bialkowskaa, A., Tkaczuk, K., Dlugolecka, A., Kur, J., and Turkiewicz, M. (2009) Identification and molecular modeling of a novel lipase from an Antarctic soil metagenomic library. Pol J Microbiol 58: 199-204.
-
(2009)
Pol J Microbiol
, vol.58
, pp. 199-204
-
-
Cieslinski, H.1
Bialkowskaa, A.2
Tkaczuk, K.3
Dlugolecka, A.4
Kur, J.5
Turkiewicz, M.6
-
14
-
-
36249017917
-
Programming gene expression with combinatorial promoters
-
Cox, R.S., 3rd, Surette, M.G., and Elowitz, M.B. (2007) Programming gene expression with combinatorial promoters. Mol Syst Biol 3: 145.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 145
-
-
Cox, R.S.1
Surette, M.G.2
Elowitz, M.B.3
-
15
-
-
77954688643
-
A synthetic three-color scaffold for monitoring genetic regulation and noise
-
Cox, R.S., 3rd, Dunlop, M.J., and Elowitz, M.B. (2010) A synthetic three-color scaffold for monitoring genetic regulation and noise. J Biol Eng 4: 10.
-
(2010)
J Biol Eng
, vol.4
, pp. 10
-
-
Cox, R.S.1
Dunlop, M.J.2
Elowitz, M.B.3
-
16
-
-
77649206077
-
Expanding small-molecule functional metagenomics through parallel screening of broad-host-range cosmid environmental DNA libraries in diverse proteobacteria
-
Craig, J.W., Chang, F.Y., Kim, J.H., Obiajulu, S.C., and Brady, S.F. (2010) Expanding small-molecule functional metagenomics through parallel screening of broad-host-range cosmid environmental DNA libraries in diverse proteobacteria. Appl Environ Microbiol 76: 1633-1641.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 1633-1641
-
-
Craig, J.W.1
Chang, F.Y.2
Kim, J.H.3
Obiajulu, S.C.4
Brady, S.F.5
-
17
-
-
19144366982
-
The metagenomics of soil
-
Daniel, R. (2005) The metagenomics of soil. Nat Rev Microbiol 3: 470-478.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 470-478
-
-
Daniel, R.1
-
18
-
-
0033178813
-
Chemical modification of enzymes for enhanced functionality
-
DeSantis, G., and Jones, J.B. (1999) Chemical modification of enzymes for enhanced functionality. Curr Opin Biotechnol 10: 324-330.
-
(1999)
Curr Opin Biotechnol
, vol.10
, pp. 324-330
-
-
DeSantis, G.1
Jones, J.B.2
-
19
-
-
41649109613
-
Functional metagenomic profiling of nine biomes
-
Dinsdale, E.A., Edwards, R.A., Hall, D., Angly, F., Breitbart, M., Brulc, J.M., etal. (2008) Functional metagenomic profiling of nine biomes. Nature 452: 629-632.
-
(2008)
Nature
, vol.452
, pp. 629-632
-
-
Dinsdale, E.A.1
Edwards, R.A.2
Hall, D.3
Angly, F.4
Breitbart, M.5
Brulc, J.M.6
-
20
-
-
0347357617
-
Protein folding and misfolding
-
Dobson, C.M. (2003) Protein folding and misfolding. Nature 426: 884-890.
-
(2003)
Nature
, vol.426
, pp. 884-890
-
-
Dobson, C.M.1
-
21
-
-
78149406841
-
Mining metagenomes for novel cellulase genes
-
Duan, C.J., and Feng, J.X. (2010) Mining metagenomes for novel cellulase genes. Biotechnol Lett 32: 1765-1775.
-
(2010)
Biotechnol Lett
, vol.32
, pp. 1765-1775
-
-
Duan, C.J.1
Feng, J.X.2
-
22
-
-
34249864393
-
Cloning and identification of novel cellulase genes from uncultured microorganisms in rabbit cecum and characterization of the expressed cellulases
-
Feng, Y., Duan, C.J., Pang, H., Mo, X.C., Wu, C.F., Yu, Y., etal. (2007) Cloning and identification of novel cellulase genes from uncultured microorganisms in rabbit cecum and characterization of the expressed cellulases. Appl Microbiol Biotechnol 75: 319-328.
-
(2007)
Appl Microbiol Biotechnol
, vol.75
, pp. 319-328
-
-
Feng, Y.1
Duan, C.J.2
Pang, H.3
Mo, X.C.4
Wu, C.F.5
Yu, Y.6
-
23
-
-
78349308978
-
Metagenomic era for biocatalyst identification
-
Fernandez-Arrojo, L., Guazzaroni, M.E., Lopez-Cortes, N., Beloqui, A., and Ferrer, M. (2010) Metagenomic era for biocatalyst identification. Curr Opin Biotechnol 21: 725-733.
-
(2010)
Curr Opin Biotechnol
, vol.21
, pp. 725-733
-
-
Fernandez-Arrojo, L.1
Guazzaroni, M.E.2
Lopez-Cortes, N.3
Beloqui, A.4
Ferrer, M.5
-
24
-
-
4143080300
-
Expression of a temperature-sensitive esterase in a novel chaperone-based Escherichia coli strain
-
Ferrer, M., Chernikova, T.N., Timmis, K.N., and Golyshin, P.N. (2004) Expression of a temperature-sensitive esterase in a novel chaperone-based Escherichia coli strain. Appl Environ Microbiol 70: 4499-4504.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 4499-4504
-
-
Ferrer, M.1
Chernikova, T.N.2
Timmis, K.N.3
Golyshin, P.N.4
-
25
-
-
23944523334
-
Microbial enzymes mined from the Urania deep-sea hypersaline anoxic basin
-
Ferrer, M., Golyshina, O.V., Chernikova, T.N., Khachane, A.N., Martins Dos Santos, V.A., Yakimov, M.M., etal. (2005a) Microbial enzymes mined from the Urania deep-sea hypersaline anoxic basin. Chem Biol 12: 895-904.
-
(2005)
Chem Biol
, vol.12
, pp. 895-904
-
-
Ferrer, M.1
Golyshina, O.V.2
Chernikova, T.N.3
Khachane, A.N.4
Martins Dos Santos, V.A.5
Yakimov, M.M.6
-
26
-
-
28644438257
-
Novel hydrolase diversity retrieved from a metagenome library of bovine rumen microflora
-
Ferrer, M., Golyshina, O.V., Chernikova, T.N., Khachane, A.N., Reyes-Duarte, D., Santos, V.A., etal. (2005b) Novel hydrolase diversity retrieved from a metagenome library of bovine rumen microflora. Environ Microbiol 7: 1996-2010.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1996-2010
-
-
Ferrer, M.1
Golyshina, O.V.2
Chernikova, T.N.3
Khachane, A.N.4
Reyes-Duarte, D.5
Santos, V.A.6
-
27
-
-
55249114699
-
Metagenomics for mining new genetic resources of microbial communities
-
Ferrer, M., Beloqui, A., Timmis, K.N., and Golyshin, P.N. (2009) Metagenomics for mining new genetic resources of microbial communities. J Mol Microbiol Biotechnol 16: 109-123.
-
(2009)
J Mol Microbiol Biotechnol
, vol.16
, pp. 109-123
-
-
Ferrer, M.1
Beloqui, A.2
Timmis, K.N.3
Golyshin, P.N.4
-
28
-
-
84862689245
-
Functional metagenomics unveils a multifunctional glycosyl hydrolase from the family 43 catalysing the breakdown of plant polymers in the calf rumen
-
Ferrer, M., Ghazi, A., Beloqui, A., Vieites, J.M., Lopez-Cortes, N., Marin-Navarro, J., etal. (2012) Functional metagenomics unveils a multifunctional glycosyl hydrolase from the family 43 catalysing the breakdown of plant polymers in the calf rumen. PLoS ONE 7: e38134.
-
(2012)
PLoS ONE
, vol.7
, pp. e38134
-
-
Ferrer, M.1
Ghazi, A.2
Beloqui, A.3
Vieites, J.M.4
Lopez-Cortes, N.5
Marin-Navarro, J.6
-
29
-
-
4344598273
-
Quantifying the accessibility of the metagenome by random expression cloning techniques
-
Gabor, E.M., Alkema, W.B., and Janssen, D.B. (2004) Quantifying the accessibility of the metagenome by random expression cloning techniques. Environ Microbiol 6: 879-886.
-
(2004)
Environ Microbiol
, vol.6
, pp. 879-886
-
-
Gabor, E.M.1
Alkema, W.B.2
Janssen, D.B.3
-
30
-
-
31944447797
-
Transcriptional regulators a la carte: engineering new effector specificities in bacterial regulatory proteins
-
Galvao, T.C., and de Lorenzo, V. (2006) Transcriptional regulators a la carte: engineering new effector specificities in bacterial regulatory proteins. Curr Opin Biotechnol 17: 34-42.
-
(2006)
Curr Opin Biotechnol
, vol.17
, pp. 34-42
-
-
Galvao, T.C.1
de Lorenzo, V.2
-
31
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichia coli
-
Gardner, T.S., Cantor, C.R., and Collins, J.J. (2000) Construction of a genetic toggle switch in Escherichia coli. Nature 403: 339-342.
-
(2000)
Nature
, vol.403
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
Collins, J.J.3
-
33
-
-
79952754522
-
A metagenomic beta-glucuronidase uncovers a core adaptive function of the human intestinal microbiome
-
Gloux, K., Berteau, O., El Oumami, H., Beguet, F., Leclerc, M., and Dore, J. (2010) A metagenomic beta-glucuronidase uncovers a core adaptive function of the human intestinal microbiome. Proc Natl Acad Sci USA 108 (Suppl. 1): 4539-4546.
-
(2010)
Proc Natl Acad Sci USA
, vol.108
, pp. 4539-4546
-
-
Gloux, K.1
Berteau, O.2
El Oumami, H.3
Beguet, F.4
Leclerc, M.5
Dore, J.6
-
34
-
-
84880509954
-
Metagenomic technology and genome mining: emerging areas for exploring novel nitrilases
-
Gong, J.S., Lu, Z.M., Li, H., Zhou, Z.M., Shi, J.S., and Xu, Z.H. (2013a) Metagenomic technology and genome mining: emerging areas for exploring novel nitrilases. Appl Microbiol Biotechnol 97: 6603-6611.
-
(2013)
Appl Microbiol Biotechnol
, vol.97
, pp. 6603-6611
-
-
Gong, J.S.1
Lu, Z.M.2
Li, H.3
Zhou, Z.M.4
Shi, J.S.5
Xu, Z.H.6
-
35
-
-
84878851676
-
Biochemical analysis of a highly specific, pH stable xylanase gene identified from a bovine rumen-derived metagenomic library
-
Gong, X., Gruniniger, R.J., Forster, R.J., Teather, R.M., and McAllister, T.A. (2013b) Biochemical analysis of a highly specific, pH stable xylanase gene identified from a bovine rumen-derived metagenomic library. Appl Microbiol Biotechnol 97: 2423-2431.
-
(2013)
Appl Microbiol Biotechnol
, vol.97
, pp. 2423-2431
-
-
Gong, X.1
Gruniniger, R.J.2
Forster, R.J.3
Teather, R.M.4
McAllister, T.A.5
-
36
-
-
80255132366
-
Analysis of complex microbial communities through metagenomic survey
-
Marco, D. (ed.). Norfolk, UK: Caister Academic
-
Guazzaroni, M.-E., Golyshin, P.N., and Ferrer, M. (2010a) Analysis of complex microbial communities through metagenomic survey. In Metagenomics: Theory, Methods and Applications. Marco, D. (ed.). Norfolk, UK: Caister Academic, pp. 55-77.
-
(2010)
Metagenomics: Theory, Methods and Applications
, pp. 55-77
-
-
Guazzaroni, M.-E.1
Golyshin, P.N.2
Ferrer, M.3
-
37
-
-
84922662497
-
Metagenomic mining of enzyme diversity
-
Timmis, K. (ed.). Heidelberg, Germany: Springer
-
Guazzaroni, M.E., Beloqui, A., Vieites, J.M., Al-ramahi, Y., Cortés, N.L., Ghazi, A., etal. (2010b) Metagenomic mining of enzyme diversity. In Handbook of Hydrocarbon and Lipid Microbiology. Timmis, K. (ed.). Heidelberg, Germany: Springer, pp. 2911-2927.
-
(2010)
Handbook of Hydrocarbon and Lipid Microbiology
, pp. 2911-2927
-
-
Guazzaroni, M.E.1
Beloqui, A.2
Vieites, J.M.3
Al-ramahi, Y.4
Cortés, N.L.5
Ghazi, A.6
-
38
-
-
84875877949
-
Novel acid resistance genes from the metagenome of the Tinto River, an extremely acidic environment
-
Guazzaroni, M.E., Morgante, V., Mirete, S., and Gonzalez-Pastor, J.E. (2013) Novel acid resistance genes from the metagenome of the Tinto River, an extremely acidic environment. Environ Microbiol 15: 1088-1102.
-
(2013)
Environ Microbiol
, vol.15
, pp. 1088-1102
-
-
Guazzaroni, M.E.1
Morgante, V.2
Mirete, S.3
Gonzalez-Pastor, J.E.4
-
39
-
-
0036323668
-
Bacterial alkaline proteases: molecular approaches and industrial applications
-
Gupta, R., Beg, Q.K., and Lorenz, P. (2002) Bacterial alkaline proteases: molecular approaches and industrial applications. Appl Microbiol Biotechnol 59: 15-32.
-
(2002)
Appl Microbiol Biotechnol
, vol.59
, pp. 15-32
-
-
Gupta, R.1
Beg, Q.K.2
Lorenz, P.3
-
40
-
-
42149162147
-
The genome BLASTatlas-a GeneWiz extension for visualization of whole-genome homology
-
Hallin, P.F., Binnewies, T.T., and Ussery, D.W. (2008) The genome BLASTatlas-a GeneWiz extension for visualization of whole-genome homology. Mol Biosyst 4: 363-371.
-
(2008)
Mol Biosyst
, vol.4
, pp. 363-371
-
-
Hallin, P.F.1
Binnewies, T.T.2
Ussery, D.W.3
-
41
-
-
10344227692
-
Metagenomics: application of genomics to uncultured microorganisms
-
Handelsman, J. (2004) Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev 68: 669-685.
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, pp. 669-685
-
-
Handelsman, J.1
-
42
-
-
33747518326
-
Industrial applications of microbial lipases
-
Hasan, F., Shah, A.A., and Hameed, A. (2006) Industrial applications of microbial lipases. Enzyme Microb Technol 39: 235-251.
-
(2006)
Enzyme Microb Technol
, vol.39
, pp. 235-251
-
-
Hasan, F.1
Shah, A.A.2
Hameed, A.3
-
43
-
-
67649609988
-
Identification of a novel alkaliphilic esterase active at low temperatures by screening a metagenomic library from antarctic desert soil
-
Heath, C., Hu, X.P., Cary, S.C., and Cowan, D. (2009) Identification of a novel alkaliphilic esterase active at low temperatures by screening a metagenomic library from antarctic desert soil. Appl Environ Microbiol 75: 4657-4659.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 4657-4659
-
-
Heath, C.1
Hu, X.P.2
Cary, S.C.3
Cowan, D.4
-
44
-
-
2542531557
-
Industrial biotechnology-a chance at redemption
-
Herrera, S. (2004) Industrial biotechnology-a chance at redemption. Nat Biotechnol 22: 671-675.
-
(2004)
Nat Biotechnol
, vol.22
, pp. 671-675
-
-
Herrera, S.1
-
45
-
-
72949101011
-
Chitinase genes revealed and compared in bacterial isolates, DNA extracts and a metagenomic library from a phytopathogen-suppressive soil
-
Hjort, K., Bergstrom, M., Adesina, M.F., Jansson, J.K., Smalla, K., and Sjoling, S. (2010) Chitinase genes revealed and compared in bacterial isolates, DNA extracts and a metagenomic library from a phytopathogen-suppressive soil. FEMS Microbiol Ecol 71: 197-207.
-
(2010)
FEMS Microbiol Ecol
, vol.71
, pp. 197-207
-
-
Hjort, K.1
Bergstrom, M.2
Adesina, M.F.3
Jansson, J.K.4
Smalla, K.5
Sjoling, S.6
-
46
-
-
0348225170
-
Rapid identification of enantioselective ketone reductions using targeted microbial libraries
-
Homann, M.J., Vail, R.B., Previte, E., Tamarez, M., Morgan, B., Dodds, D.R., and Zaks, A. (2004) Rapid identification of enantioselective ketone reductions using targeted microbial libraries. Tetrahedron 60: 789-797.
-
(2004)
Tetrahedron
, vol.60
, pp. 789-797
-
-
Homann, M.J.1
Vail, R.B.2
Previte, E.3
Tamarez, M.4
Morgan, B.5
Dodds, D.R.6
Zaks, A.7
-
47
-
-
33846412600
-
Rapid isolation of rare clones from highly complex DNA libraries by PCR analysis of liquid gel pools
-
Hrvatin, S., and Piel, J. (2007) Rapid isolation of rare clones from highly complex DNA libraries by PCR analysis of liquid gel pools. J Microbiol Methods 68: 434-436.
-
(2007)
J Microbiol Methods
, vol.68
, pp. 434-436
-
-
Hrvatin, S.1
Piel, J.2
-
48
-
-
84155186467
-
A novel, extremely alkaliphilic and cold-active esterase from Antarctic desert soil
-
Hu, X.P., Heath, C., Taylor, M.P., Tuffin, M., and Cowan, D. (2012) A novel, extremely alkaliphilic and cold-active esterase from Antarctic desert soil. Extremophiles 16: 79-86.
-
(2012)
Extremophiles
, vol.16
, pp. 79-86
-
-
Hu, X.P.1
Heath, C.2
Taylor, M.P.3
Tuffin, M.4
Cowan, D.5
-
49
-
-
71049146248
-
Characterization of a novel beta-glucosidase-like activity from a soil metagenome
-
Jiang, C., Ma, G., Li, S., Hu, T., Che, Z., Shen, P., etal. (2009) Characterization of a novel beta-glucosidase-like activity from a soil metagenome. J Microbiol 47: 542-548.
-
(2009)
J Microbiol
, vol.47
, pp. 542-548
-
-
Jiang, C.1
Ma, G.2
Li, S.3
Hu, T.4
Che, Z.5
Shen, P.6
-
50
-
-
84878325472
-
Identification of a metagenome-derived prephenate dehydrogenase gene from an alkaline-polluted soil microorganism
-
Jiang, C., Yin, B., Tang, M., Zhao, G., He, J., Shen, P., and Wu, B. (2013) Identification of a metagenome-derived prephenate dehydrogenase gene from an alkaline-polluted soil microorganism. Antonie Van Leeuwenhoek 103: 1209-1219.
-
(2013)
Antonie Van Leeuwenhoek
, vol.103
, pp. 1209-1219
-
-
Jiang, C.1
Yin, B.2
Tang, M.3
Zhao, G.4
He, J.5
Shen, P.6
Wu, B.7
-
51
-
-
41549097317
-
Characterization of a gene encoding cellulase from uncultured soil bacteria
-
Kim, S.J., Lee, C.M., Han, B.R., Kim, M.Y., Yeo, Y.S., Yoon, S.H., etal. (2008) Characterization of a gene encoding cellulase from uncultured soil bacteria. FEMS Microbiol Lett 282: 44-51.
-
(2008)
FEMS Microbiol Lett
, vol.282
, pp. 44-51
-
-
Kim, S.J.1
Lee, C.M.2
Han, B.R.3
Kim, M.Y.4
Yeo, Y.S.5
Yoon, S.H.6
-
52
-
-
0026594245
-
Stable propagation of cosmid sized human DNA inserts in an F factor based vector
-
Kim, U.J., Shizuya, H., de Jong, P.J., Birren, B., and Simon, M.I. (1992) Stable propagation of cosmid sized human DNA inserts in an F factor based vector. Nucleic Acids Res 20: 1083-1085.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 1083-1085
-
-
Kim, U.J.1
Shizuya, H.2
de Jong, P.J.3
Birren, B.4
Simon, M.I.5
-
53
-
-
0036669678
-
Industrial enzyme applications
-
Kirk, O., Borchert, T.V., and Fuglsang, C.C. (2002) Industrial enzyme applications. Curr Opin Biotechnol 13: 345-351.
-
(2002)
Curr Opin Biotechnol
, vol.13
, pp. 345-351
-
-
Kirk, O.1
Borchert, T.V.2
Fuglsang, C.C.3
-
54
-
-
0037974521
-
Metagenomes of complex microbial consortia derived from different soils as sources for novel genes conferring formation of carbonyls from short-chain polyols on Escherichia coli
-
Knietsch, A., Waschkowitz, T., Bowien, S., Henne, A., and Daniel, R. (2003) Metagenomes of complex microbial consortia derived from different soils as sources for novel genes conferring formation of carbonyls from short-chain polyols on Escherichia coli. J Mol Microbiol Biotechnol 5: 46-56.
-
(2003)
J Mol Microbiol Biotechnol
, vol.5
, pp. 46-56
-
-
Knietsch, A.1
Waschkowitz, T.2
Bowien, S.3
Henne, A.4
Daniel, R.5
-
55
-
-
84882615394
-
Strategy for screening metagenomic resources for exocellulase activity using a robotic, high-throughput screening system
-
Ko, K.C., Han, Y., Cheong, D.E., Choi, J.H., and Song, J.J. (2013) Strategy for screening metagenomic resources for exocellulase activity using a robotic, high-throughput screening system. J Microbiol Methods 94: 311-316.
-
(2013)
J Microbiol Methods
, vol.94
, pp. 311-316
-
-
Ko, K.C.1
Han, Y.2
Cheong, D.E.3
Choi, J.H.4
Song, J.J.5
-
56
-
-
63249117139
-
The role of predictive modelling in rationally re-engineering biological systems
-
Koide, T., Pang, W.L., and Baliga, N.S. (2009) The role of predictive modelling in rationally re-engineering biological systems. Nat Rev Microbiol 7: 297-305.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 297-305
-
-
Koide, T.1
Pang, W.L.2
Baliga, N.S.3
-
57
-
-
77149128346
-
Characterization and kinetic analysis of a thermostable GH3 beta-glucosidase from Penicillium brasilianum
-
Krogh, K.B., Harris, P.V., Olsen, C.L., Johansen, K.S., Hojer-Pedersen, J., Borjesson, J., and Olsson, L. (2010) Characterization and kinetic analysis of a thermostable GH3 beta-glucosidase from Penicillium brasilianum. Appl Microbiol Biotechnol 86: 143-154.
-
(2010)
Appl Microbiol Biotechnol
, vol.86
, pp. 143-154
-
-
Krogh, K.B.1
Harris, P.V.2
Olsen, C.L.3
Johansen, K.S.4
Hojer-Pedersen, J.5
Borjesson, J.6
Olsson, L.7
-
58
-
-
84855895452
-
Engineering whole-cell biosensors with no antibiotic markers for monitoring aromatic compounds in the environment
-
de Las Heras, A., and de Lorenzo, V. (2012) Engineering whole-cell biosensors with no antibiotic markers for monitoring aromatic compounds in the environment. Methods Mol Biol 834: 261-281.
-
(2012)
Methods Mol Biol
, vol.834
, pp. 261-281
-
-
de Las Heras, A.1
de Lorenzo, V.2
-
59
-
-
77955138108
-
Engineering input/output nodes in prokaryotic regulatory circuits
-
de Las Heras, A., Carreno, C.A., Martinez-Garcia, E., and de Lorenzo, V. (2010) Engineering input/output nodes in prokaryotic regulatory circuits. FEMS Microbiol Rev 34: 842-865.
-
(2010)
FEMS Microbiol Rev
, vol.34
, pp. 842-865
-
-
de Las Heras, A.1
Carreno, C.A.2
Martinez-Garcia, E.3
de Lorenzo, V.4
-
60
-
-
84894298679
-
Gene-targeted metagenomic analysis of glucan-branching enzyme gene profiles among human and animal fecal microbiota
-
Lee, S., Cantarel, B., Henrissat, B., Gevers, D., Birren, B.W., Huttenhower, C., and Ko, G. (2013) Gene-targeted metagenomic analysis of glucan-branching enzyme gene profiles among human and animal fecal microbiota. ISME J 8: 493-503.
-
(2013)
ISME J
, vol.8
, pp. 493-503
-
-
Lee, S.1
Cantarel, B.2
Henrissat, B.3
Gevers, D.4
Birren, B.W.5
Huttenhower, C.6
Ko, G.7
-
61
-
-
77249133557
-
A comparison of primer sets for detecting 16S rRNA and hydrazine oxidoreductase genes of anaerobic ammonium-oxidizing bacteria in marine sediments
-
Li, M., Hong, Y., Klotz, M.G., and Gu, J.D. (2010) A comparison of primer sets for detecting 16S rRNA and hydrazine oxidoreductase genes of anaerobic ammonium-oxidizing bacteria in marine sediments. Appl Microbiol Biotechnol 86: 781-790.
-
(2010)
Appl Microbiol Biotechnol
, vol.86
, pp. 781-790
-
-
Li, M.1
Hong, Y.2
Klotz, M.G.3
Gu, J.D.4
-
62
-
-
19144366814
-
Metagenomics and industrial applications
-
Lorenz, P., and Eck, J. (2005) Metagenomics and industrial applications. Nat Rev Microbiol 3: 510-516.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 510-516
-
-
Lorenz, P.1
Eck, J.2
-
63
-
-
0036900864
-
Screening for novel enzymes for biocatalytic processes: accessing the metagenome as a resource of novel functional sequence space
-
Lorenz, P., Liebeton, K., Niehaus, F., and Eck, J. (2002) Screening for novel enzymes for biocatalytic processes: accessing the metagenome as a resource of novel functional sequence space. Curr Opin Biotechnol 13: 572-577.
-
(2002)
Curr Opin Biotechnol
, vol.13
, pp. 572-577
-
-
Lorenz, P.1
Liebeton, K.2
Niehaus, F.3
Eck, J.4
-
64
-
-
0036714783
-
Microbial cellulose utilization: fundamentals and biotechnology
-
table of contents
-
Lynd, L.R., Weimer, P.J., van Zyl, W.H., and Pretorius, I.S. (2002) Microbial cellulose utilization: fundamentals and biotechnology. Microbiol Mol Biol Rev 66: 506-577. table of contents.
-
(2002)
Microbiol Mol Biol Rev
, vol.66
, pp. 506-577
-
-
Lynd, L.R.1
Weimer, P.J.2
van Zyl, W.H.3
Pretorius, I.S.4
-
65
-
-
84891631101
-
The metabolic cost of flagellar motion in Pseudomonas putida KT2440
-
Martinez-Garcia, E., Nikel, P.I., Chavarria, M., and de Lorenzo, V. (2014) The metabolic cost of flagellar motion in Pseudomonas putida KT2440. Environ Microbiol 16: 291-303.
-
(2014)
Environ Microbiol
, vol.16
, pp. 291-303
-
-
Martinez-Garcia, E.1
Nikel, P.I.2
Chavarria, M.3
de Lorenzo, V.4
-
66
-
-
84878605968
-
Biochemical diversity of carboxyl esterases and lipases from Lake Arreo (Spain): a metagenomic approach
-
Martinez-Martinez, M., Alcaide, M., Tchigvintsev, A., Reva, O., Polaina, J., Bargiela, R., etal. (2013) Biochemical diversity of carboxyl esterases and lipases from Lake Arreo (Spain): a metagenomic approach. Appl Environ Microbiol 79: 3553-3562.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 3553-3562
-
-
Martinez-Martinez, M.1
Alcaide, M.2
Tchigvintsev, A.3
Reva, O.4
Polaina, J.5
Bargiela, R.6
-
67
-
-
84893922268
-
Biochemical studies on a versatile esterase that is most catalytically active with polyaromatic esters
-
Martinez-Martinez, M., Lores, I., Pena-Garcia, C., Bargiela, R., Reyes-Duarte, D., Guazzaroni, M.E., etal. (2014) Biochemical studies on a versatile esterase that is most catalytically active with polyaromatic esters. Microb Biotechnol 7: 184-191.
-
(2014)
Microb Biotechnol
, vol.7
, pp. 184-191
-
-
Martinez-Martinez, M.1
Lores, I.2
Pena-Garcia, C.3
Bargiela, R.4
Reyes-Duarte, D.5
Guazzaroni, M.E.6
-
68
-
-
3543118867
-
Detergent proteases
-
Maurer, K.H. (2004) Detergent proteases. Curr Opin Biotechnol 15: 330-334.
-
(2004)
Curr Opin Biotechnol
, vol.15
, pp. 330-334
-
-
Maurer, K.H.1
-
69
-
-
27444438599
-
The microbial pan-genome
-
Medini, D., Donati, C., Tettelin, H., Masignani, V., and Rappuoli, R. (2005) The microbial pan-genome. Curr Opin Genet Dev 15: 589-594.
-
(2005)
Curr Opin Genet Dev
, vol.15
, pp. 589-594
-
-
Medini, D.1
Donati, C.2
Tettelin, H.3
Masignani, V.4
Rappuoli, R.5
-
70
-
-
33644956913
-
Surveying biotransformations with a la carte genetic traps: translating dehydrochlorination of lindane (gamma-hexachlorocyclohexane) into lacZ-based phenotypes
-
Mohn, W.W., Garmendia, J., Galvao, T.C., and de Lorenzo, V. (2006) Surveying biotransformations with a la carte genetic traps: translating dehydrochlorination of lindane (gamma-hexachlorocyclohexane) into lacZ-based phenotypes. Environ Microbiol 8: 546-555.
-
(2006)
Environ Microbiol
, vol.8
, pp. 546-555
-
-
Mohn, W.W.1
Garmendia, J.2
Galvao, T.C.3
de Lorenzo, V.4
-
71
-
-
79251595456
-
Construction of a genetic multiplexer to toggle between chemosensory pathways in Escherichia coli
-
Moon, T.S., Clarke, E.J., Groban, E.S., Tamsir, A., Clark, R.M., Eames, M., etal. (2011) Construction of a genetic multiplexer to toggle between chemosensory pathways in Escherichia coli. J Mol Biol 406: 215-227.
-
(2011)
J Mol Biol
, vol.406
, pp. 215-227
-
-
Moon, T.S.1
Clarke, E.J.2
Groban, E.S.3
Tamsir, A.4
Clark, R.M.5
Eames, M.6
-
72
-
-
67349208005
-
A new approach to retrieve full lengths of functional genes from soil by PCR-DGGE and metagenome walking
-
Morimoto, S., and Fujii, T. (2009) A new approach to retrieve full lengths of functional genes from soil by PCR-DGGE and metagenome walking. Appl Microbiol Biotechnol 83: 389-396.
-
(2009)
Appl Microbiol Biotechnol
, vol.83
, pp. 389-396
-
-
Morimoto, S.1
Fujii, T.2
-
73
-
-
84868612023
-
Phylogenetically novel LuxI/LuxR-type quorum sensing systems isolated using a metagenomic approach
-
Nasuno, E., Kimura, N., Fujita, M.J., Nakatsu, C.H., Kamagata, Y., and Hanada, S. (2012) Phylogenetically novel LuxI/LuxR-type quorum sensing systems isolated using a metagenomic approach. Appl Environ Microbiol 78: 8067-8074.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 8067-8074
-
-
Nasuno, E.1
Kimura, N.2
Fujita, M.J.3
Nakatsu, C.H.4
Kamagata, Y.5
Hanada, S.6
-
74
-
-
84872193848
-
Implantation of unmarked regulatory and metabolic modules in Gram-negative bacteria with specialised mini-transposon delivery vectors
-
Nikel, P.I., and de Lorenzo, V. (2013) Implantation of unmarked regulatory and metabolic modules in Gram-negative bacteria with specialised mini-transposon delivery vectors. J Biotechnol 163: 143-154.
-
(2013)
J Biotechnol
, vol.163
, pp. 143-154
-
-
Nikel, P.I.1
de Lorenzo, V.2
-
75
-
-
80053264411
-
Regulation of alternative sigma factor use
-
Osterberg, S., del Peso-Santos, T., and Shingler, V. (2011) Regulation of alternative sigma factor use. Annu Rev Microbiol 65: 37-55.
-
(2011)
Annu Rev Microbiol
, vol.65
, pp. 37-55
-
-
Osterberg, S.1
del Peso-Santos, T.2
Shingler, V.3
-
76
-
-
65549136340
-
Identification of cellulase genes from the metagenomes of compost soils and functional characterization of one novel endoglucanase
-
Pang, H., Zhang, P., Duan, C.J., Mo, X.C., Tang, J.L., and Feng, J.X. (2009) Identification of cellulase genes from the metagenomes of compost soils and functional characterization of one novel endoglucanase. Curr Microbiol 58: 404-408.
-
(2009)
Curr Microbiol
, vol.58
, pp. 404-408
-
-
Pang, H.1
Zhang, P.2
Duan, C.J.3
Mo, X.C.4
Tang, J.L.5
Feng, J.X.6
-
77
-
-
33746121105
-
Outlook for cellulase improvement: screening and selection strategies
-
Percival Zhang, Y.H., Himmel, M.E., and Mielenz, J.R. (2006) Outlook for cellulase improvement: screening and selection strategies. Biotechnol Adv 24: 452-481.
-
(2006)
Biotechnol Adv
, vol.24
, pp. 452-481
-
-
Percival Zhang, Y.H.1
Himmel, M.E.2
Mielenz, J.R.3
-
78
-
-
33646722147
-
Emergent properties of reduced-genome Escherichia coli
-
Posfai, G., Plunkett, G., 3rd, Feher, T., Frisch, D., Keil, G.M., Umenhoffer, K., etal. (2006) Emergent properties of reduced-genome Escherichia coli. Science 312: 1044-1046.
-
(2006)
Science
, vol.312
, pp. 1044-1046
-
-
Posfai, G.1
Plunkett, G.2
Feher, T.3
Frisch, D.4
Keil, G.M.5
Umenhoffer, K.6
-
79
-
-
66249088017
-
The second wave of synthetic biology: from modules to systems
-
Purnick, P.E., and Weiss, R. (2009) The second wave of synthetic biology: from modules to systems. Nat Rev Mol Cell Biol 10: 410-422.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, pp. 410-422
-
-
Purnick, P.E.1
Weiss, R.2
-
80
-
-
78651406505
-
Distributed biological computation with multicellular engineered networks
-
Regot, S., Macia, J., Conde, N., Furukawa, K., Kjellen, J., Peeters, T., etal. (2011) Distributed biological computation with multicellular engineered networks. Nature 469: 207-211.
-
(2011)
Nature
, vol.469
, pp. 207-211
-
-
Regot, S.1
Macia, J.2
Conde, N.3
Furukawa, K.4
Kjellen, J.5
Peeters, T.6
-
81
-
-
13544253396
-
New thermophilic and thermostable esterase with sequence similarity to the hormone-sensitive lipase family, cloned from a metagenomic library
-
Rhee, J.K., Ahn, D.G., Kim, Y.G., and Oh, J.W. (2005) New thermophilic and thermostable esterase with sequence similarity to the hormone-sensitive lipase family, cloned from a metagenomic library. Appl Environ Microbiol 71: 817-825.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 817-825
-
-
Rhee, J.K.1
Ahn, D.G.2
Kim, Y.G.3
Oh, J.W.4
-
82
-
-
84889250030
-
Design of orthogonal genetic switches based on a crosstalk map of sigmas, anti-sigmas, and promoters
-
Rhodius, V.A., Segall-Shapiro, T.H., Sharon, B.D., Ghodasara, A., Orlova, E., Tabakh, H., etal. (2013) Design of orthogonal genetic switches based on a crosstalk map of sigmas, anti-sigmas, and promoters. Mol Syst Biol 9: 702.
-
(2013)
Mol Syst Biol
, vol.9
, pp. 702
-
-
Rhodius, V.A.1
Segall-Shapiro, T.H.2
Sharon, B.D.3
Ghodasara, A.4
Orlova, E.5
Tabakh, H.6
-
83
-
-
4344587758
-
Uncultured soil bacteria are a reservoir of new antibiotic resistance genes
-
Riesenfeld, C.S., Goodman, R.M., and Handelsman, J. (2004) Uncultured soil bacteria are a reservoir of new antibiotic resistance genes. Environ Microbiol 6: 981-989.
-
(2004)
Environ Microbiol
, vol.6
, pp. 981-989
-
-
Riesenfeld, C.S.1
Goodman, R.M.2
Handelsman, J.3
-
84
-
-
0037805644
-
Biotechnological prospects from metagenomics
-
Schloss, P.D., and Handelsman, J. (2003) Biotechnological prospects from metagenomics. Curr Opin Biotechnol 14: 303-310.
-
(2003)
Curr Opin Biotechnol
, vol.14
, pp. 303-310
-
-
Schloss, P.D.1
Handelsman, J.2
-
86
-
-
84863612293
-
Synthetic constructs in/for the environment: managing the interplay between natural and engineered Biology
-
Schmidt, M., and de Lorenzo, V. (2012) Synthetic constructs in/for the environment: managing the interplay between natural and engineered Biology. FEBS Lett 586: 2199-2206.
-
(2012)
FEBS Lett
, vol.586
, pp. 2199-2206
-
-
Schmidt, M.1
de Lorenzo, V.2
-
87
-
-
74549221383
-
Annotation error in public databases: misannotation of molecular function in enzyme superfamilies
-
Schnoes, A.M., Brown, S.D., Dodevski, I., and Babbitt, P.C. (2009) Annotation error in public databases: misannotation of molecular function in enzyme superfamilies. PLoS Comput Biol 5: e1000605.
-
(2009)
PLoS Comput Biol
, vol.5
, pp. e1000605
-
-
Schnoes, A.M.1
Brown, S.D.2
Dodevski, I.3
Babbitt, P.C.4
-
88
-
-
0037436563
-
Dispelling the myths-biocatalysis in industrial synthesis
-
Schoemaker, H.E., Mink, D., and Wubbolts, M.G. (2003) Dispelling the myths-biocatalysis in industrial synthesis. Science 299: 1694-1697.
-
(2003)
Science
, vol.299
, pp. 1694-1697
-
-
Schoemaker, H.E.1
Mink, D.2
Wubbolts, M.G.3
-
89
-
-
84895797657
-
Functional screening of enzymes and bacteria for the dechlorination of hexachlorocyclohexane by a high-throughput colorimetric assay
-
Sharma, P., Jindal, S., Bala, K., Kumari, K., Niharika, N., Kaur, J., etal. (2013) Functional screening of enzymes and bacteria for the dechlorination of hexachlorocyclohexane by a high-throughput colorimetric assay. Biodegradation 25: 179-187.
-
(2013)
Biodegradation
, vol.25
, pp. 179-187
-
-
Sharma, P.1
Jindal, S.2
Bala, K.3
Kumari, K.4
Niharika, N.5
Kaur, J.6
-
90
-
-
45149118469
-
Engineering BioBrick vectors from BioBrick parts
-
Shetty, R.P., Endy, D., and Knight, T.F., Jr (2008) Engineering BioBrick vectors from BioBrick parts. J Biol Eng 2: 5.
-
(2008)
J Biol Eng
, vol.2
, pp. 5
-
-
Shetty, R.P.1
Endy, D.2
Knight Jr, T.F.3
-
91
-
-
79960364320
-
Implementing an OR-NOT (ORN) logic gate with components of the SOS regulatory network of Escherichia coli
-
Silva-Rocha, R., and de Lorenzo, V. (2011) Implementing an OR-NOT (ORN) logic gate with components of the SOS regulatory network of Escherichia coli. Mol Biosyst 7: 2389-2396.
-
(2011)
Mol Biosyst
, vol.7
, pp. 2389-2396
-
-
Silva-Rocha, R.1
de Lorenzo, V.2
-
92
-
-
84876567509
-
The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes
-
Silva-Rocha, R., Martinez-Garcia, E., Calles, B., Chavarria, M., Arce-Rodriguez, A., de Las Heras, A., etal. (2013) The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes. Nucleic Acids Res 41: D666-D675.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D666-D675
-
-
Silva-Rocha, R.1
Martinez-Garcia, E.2
Calles, B.3
Chavarria, M.4
Arce-Rodriguez, A.5
de Las Heras, A.6
-
93
-
-
65549145375
-
Rapid identification of genes encoding DNA polymerases by function-based screening of metagenomic libraries derived from glacial ice
-
Simon, C., Herath, J., Rockstroh, S., and Daniel, R. (2009) Rapid identification of genes encoding DNA polymerases by function-based screening of metagenomic libraries derived from glacial ice. Appl Environ Microbiol 75: 2964-2968.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 2964-2968
-
-
Simon, C.1
Herath, J.2
Rockstroh, S.3
Daniel, R.4
-
94
-
-
84870952001
-
Role and significance of beta-glucosidases in the hydrolysis of cellulose for bioethanol production
-
Singhania, R.R., Patel, A.K., Sukumaran, R.K., Larroche, C., and Pandey, A. (2013) Role and significance of beta-glucosidases in the hydrolysis of cellulose for bioethanol production. Bioresour Technol 127: 500-507.
-
(2013)
Bioresour Technol
, vol.127
, pp. 500-507
-
-
Singhania, R.R.1
Patel, A.K.2
Sukumaran, R.K.3
Larroche, C.4
Pandey, A.5
-
95
-
-
84875230351
-
Synthetic circuits integrating logic and memory in living cells
-
Siuti, P., Yazbek, J., and Lu, T.K. (2013) Synthetic circuits integrating logic and memory in living cells. Nat Biotechnol 31: 448-452.
-
(2013)
Nat Biotechnol
, vol.31
, pp. 448-452
-
-
Siuti, P.1
Yazbek, J.2
Lu, T.K.3
-
96
-
-
54249109419
-
Metagenomics
-
Sleator, R.D., Shortall, C., and Hill, C. (2008) Metagenomics. Lett Appl Microbiol 47: 361-366.
-
(2008)
Lett Appl Microbiol
, vol.47
, pp. 361-366
-
-
Sleator, R.D.1
Shortall, C.2
Hill, C.3
-
97
-
-
77951134703
-
A functional metagenomic approach for expanding the synthetic biology toolbox for biomass conversion
-
Sommer, M.O., Church, G.M., and Dantas, G. (2010) A functional metagenomic approach for expanding the synthetic biology toolbox for biomass conversion. Mol Syst Biol 6: 360.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 360
-
-
Sommer, M.O.1
Church, G.M.2
Dantas, G.3
-
98
-
-
55249118224
-
Advances in recovery of novel biocatalysts from metagenomes
-
Steele, H.L., Jaeger, K.E., Daniel, R., and Streit, W.R. (2009) Advances in recovery of novel biocatalysts from metagenomes. J Mol Microbiol Biotechnol 16: 25-37.
-
(2009)
J Mol Microbiol Biotechnol
, vol.16
, pp. 25-37
-
-
Steele, H.L.1
Jaeger, K.E.2
Daniel, R.3
Streit, W.R.4
-
99
-
-
34547748431
-
Functional screening of a metagenomic library for genes involved in microbial degradation of aromatic compounds
-
Suenaga, H., Ohnuki, T., and Miyazaki, K. (2007) Functional screening of a metagenomic library for genes involved in microbial degradation of aromatic compounds. Environ Microbiol 9: 2289-2297.
-
(2007)
Environ Microbiol
, vol.9
, pp. 2289-2297
-
-
Suenaga, H.1
Ohnuki, T.2
Miyazaki, K.3
-
100
-
-
72649090171
-
Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysis
-
Suenaga, H., Koyama, Y., Miyakoshi, M., Miyazaki, R., Yano, H., Sota, M., etal. (2009a) Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysis. ISME J 3: 1335-1348.
-
(2009)
ISME J
, vol.3
, pp. 1335-1348
-
-
Suenaga, H.1
Koyama, Y.2
Miyakoshi, M.3
Miyazaki, R.4
Yano, H.5
Sota, M.6
-
101
-
-
68249131073
-
The molecular basis for adaptive evolution in novel extradiol dioxygenases retrieved from the metagenome
-
Suenaga, H., Mizuta, S., and Miyazaki, K. (2009b) The molecular basis for adaptive evolution in novel extradiol dioxygenases retrieved from the metagenome. FEMS Microbiol Ecol 69: 472-480.
-
(2009)
FEMS Microbiol Ecol
, vol.69
, pp. 472-480
-
-
Suenaga, H.1
Mizuta, S.2
Miyazaki, K.3
-
102
-
-
69449083604
-
DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment
-
Sul, W.J., Park, J., Quensen, J.F., 3rd, Rodrigues, J.L., Seliger, L., Tsoi, T.V., etal. (2009) DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment. Appl Environ Microbiol 75: 5501-5506.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 5501-5506
-
-
Sul, W.J.1
Park, J.2
Quensen, J.F.3
Rodrigues, J.L.4
Seliger, L.5
Tsoi, T.V.6
-
103
-
-
26444574092
-
Expression using the T7 RNA polymerase/promoter system
-
16.2.1-16.2.11.
-
Tabor, S. (2001) Expression using the T7 RNA polymerase/promoter system. Curr Protoc Mol Biol 16.2.1-16.2.11.
-
(2001)
Curr Protoc Mol Biol
-
-
Tabor, S.1
-
104
-
-
84873189901
-
Heterologous viral expression systems in fosmid vectors increase the functional analysis potential of metagenomic libraries
-
Terron-Gonzalez, L., Medina, C., Limon-Mortes, M.C., and Santero, E. (2013) Heterologous viral expression systems in fosmid vectors increase the functional analysis potential of metagenomic libraries. Sci Rep 3: 1107.
-
(2013)
Sci Rep
, vol.3
, pp. 1107
-
-
Terron-Gonzalez, L.1
Medina, C.2
Limon-Mortes, M.C.3
Santero, E.4
-
105
-
-
84887162848
-
A potential source for cellulolytic enzyme discovery and environmental aspects revealed through metagenomics of Brazilian mangroves
-
Thompson, C.E., Beys-da-Silva, W.O., Santi, L., Berger, M., Vainstein, M.H., Guimaraes, J.A., and Vasconcelos, A.T. (2013) A potential source for cellulolytic enzyme discovery and environmental aspects revealed through metagenomics of Brazilian mangroves. AMB Express 3: 65.
-
(2013)
AMB Express
, vol.3
, pp. 65
-
-
Thompson, C.E.1
Beys-da-Silva, W.O.2
Santi, L.3
Berger, M.4
Vainstein, M.H.5
Guimaraes, J.A.6
Vasconcelos, A.T.7
-
106
-
-
52649090774
-
An invitation to the marriage of metagenomics and metabolomics
-
Turnbaugh, P.J., and Gordon, J.I. (2008) An invitation to the marriage of metagenomics and metabolomics. Cell 134: 708-713.
-
(2008)
Cell
, vol.134
, pp. 708-713
-
-
Turnbaugh, P.J.1
Gordon, J.I.2
-
107
-
-
70449727646
-
Functional metagenomics for enzyme discovery: challenges to efficient screening
-
Uchiyama, T., and Miyazaki, K. (2009) Functional metagenomics for enzyme discovery: challenges to efficient screening. Curr Opin Biotechnol 20: 616-622.
-
(2009)
Curr Opin Biotechnol
, vol.20
, pp. 616-622
-
-
Uchiyama, T.1
Miyazaki, K.2
-
108
-
-
78149437429
-
Product-induced gene expression, a product-responsive reporter assay used to screen metagenomic libraries for enzyme-encoding genes
-
Uchiyama, T., and Miyazaki, K. (2010) Product-induced gene expression, a product-responsive reporter assay used to screen metagenomic libraries for enzyme-encoding genes. Appl Environ Microbiol 76: 7029-7035.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 7029-7035
-
-
Uchiyama, T.1
Miyazaki, K.2
-
109
-
-
50249171225
-
Substrate-induced gene expression (SIGEX) screening of metagenome libraries
-
Uchiyama, T., and Watanabe, K. (2008) Substrate-induced gene expression (SIGEX) screening of metagenome libraries. Nat Protoc 3: 1202-1212.
-
(2008)
Nat Protoc
, vol.3
, pp. 1202-1212
-
-
Uchiyama, T.1
Watanabe, K.2
-
110
-
-
19144369096
-
Substrate-induced gene-expression screening of environmental metagenome libraries for isolation of catabolic genes
-
Uchiyama, T., Abe, T., Ikemura, T., and Watanabe, K. (2005) Substrate-induced gene-expression screening of environmental metagenome libraries for isolation of catabolic genes. Nat Biotechnol 23: 88-93.
-
(2005)
Nat Biotechnol
, vol.23
, pp. 88-93
-
-
Uchiyama, T.1
Abe, T.2
Ikemura, T.3
Watanabe, K.4
-
111
-
-
75249105048
-
Deep sequencing of a dimethylsulfoniopropionate-degrading gene (dmdA) by using PCR primer pairs designed on the basis of marine metagenomic data
-
Varaljay, V.A., Howard, E.C., Sun, S., and Moran, M.A. (2010) Deep sequencing of a dimethylsulfoniopropionate-degrading gene (dmdA) by using PCR primer pairs designed on the basis of marine metagenomic data. Appl Environ Microbiol 76: 609-617.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 609-617
-
-
Varaljay, V.A.1
Howard, E.C.2
Sun, S.3
Moran, M.A.4
-
112
-
-
57549094171
-
Metagenomics approaches in systems microbiology
-
Vieites, J.M., Guazzaroni, M.E., Beloqui, A., Golyshin, P.N., and Ferrer, M. (2009) Metagenomics approaches in systems microbiology. FEMS Microbiol Rev 33: 236-255.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 236-255
-
-
Vieites, J.M.1
Guazzaroni, M.E.2
Beloqui, A.3
Golyshin, P.N.4
Ferrer, M.5
-
113
-
-
33748953866
-
Genetic parts to program bacteria
-
Voigt, C.A. (2006) Genetic parts to program bacteria. Curr Opin Biotechnol 17: 548-557.
-
(2006)
Curr Opin Biotechnol
, vol.17
, pp. 548-557
-
-
Voigt, C.A.1
-
114
-
-
33644868988
-
Isolation of poly-3-hydroxybutyrate metabolism genes from complex microbial communities by phenotypic complementation of bacterial mutants
-
Wang, C., Meek, D.J., Panchal, P., Boruvka, N., Archibald, F.S., Driscoll, B.T., and Charles, T.C. (2006) Isolation of poly-3-hydroxybutyrate metabolism genes from complex microbial communities by phenotypic complementation of bacterial mutants. Appl Environ Microbiol 72: 384-391.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 384-391
-
-
Wang, C.1
Meek, D.J.2
Panchal, P.3
Boruvka, N.4
Archibald, F.S.5
Driscoll, B.T.6
Charles, T.C.7
-
115
-
-
0034632413
-
Novel natural products from soil DNA libraries in a streptomycete host
-
Wang, G.Y., Graziani, E., Waters, B., Pan, W., Li, X., McDermott, J., etal. (2000) Novel natural products from soil DNA libraries in a streptomycete host. Org Lett 2: 2401-2404.
-
(2000)
Org Lett
, vol.2
, pp. 2401-2404
-
-
Wang, G.Y.1
Graziani, E.2
Waters, B.3
Pan, W.4
Li, X.5
McDermott, J.6
-
116
-
-
84892399148
-
Metagenomic insights into the carbohydrate-active enzymes carried by the microorganisms adhering to solid digesta in the rumen of cows
-
Wang, L., Hatem, A., Catalyurek, U.V., Morrison, M., and Yu, Z. (2013) Metagenomic insights into the carbohydrate-active enzymes carried by the microorganisms adhering to solid digesta in the rumen of cows. PLoS ONE 8: e78507.
-
(2013)
PLoS ONE
, vol.8
, pp. e78507
-
-
Wang, L.1
Hatem, A.2
Catalyurek, U.V.3
Morrison, M.4
Yu, Z.5
-
117
-
-
84859488922
-
Cellulase engineering for biomass saccharification
-
Buckeridge, M.S., and Goldman, G.H. (eds). New York, USA: Springer
-
Ward, R. (2011) Cellulase engineering for biomass saccharification. In Routes to Cellulosic Ethanol. Buckeridge, M.S., and Goldman, G.H. (eds). New York, USA: Springer, pp. 135-151.
-
(2011)
Routes to Cellulosic Ethanol
, pp. 135-151
-
-
Ward, R.1
-
118
-
-
65749105400
-
A perspective: metatranscriptomics as a tool for the discovery of novel biocatalysts
-
Warnecke, F., and Hess, M. (2009) A perspective: metatranscriptomics as a tool for the discovery of novel biocatalysts. J Biotechnol 142: 91-95.
-
(2009)
J Biotechnol
, vol.142
, pp. 91-95
-
-
Warnecke, F.1
Hess, M.2
-
119
-
-
36549000721
-
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
-
Warnecke, F., Luginbuhl, P., Ivanova, N., Ghassemian, M., Richardson, T.H., Stege, J.T., etal. (2007) Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 450: 560-565.
-
(2007)
Nature
, vol.450
, pp. 560-565
-
-
Warnecke, F.1
Luginbuhl, P.2
Ivanova, N.3
Ghassemian, M.4
Richardson, T.H.5
Stege, J.T.6
-
120
-
-
77957369335
-
Synthetic gene networks in mammalian cells
-
Weber, W., and Fussenegger, M. (2010) Synthetic gene networks in mammalian cells. Curr Opin Biotechnol 21: 690-696.
-
(2010)
Curr Opin Biotechnol
, vol.21
, pp. 690-696
-
-
Weber, W.1
Fussenegger, M.2
-
121
-
-
27844461167
-
Recent developments towards the heterologous expression of complex bacterial natural product biosynthetic pathways
-
Wenzel, S.C., and Muller, R. (2005) Recent developments towards the heterologous expression of complex bacterial natural product biosynthetic pathways. Curr Opin Biotechnol 16: 594-606.
-
(2005)
Curr Opin Biotechnol
, vol.16
, pp. 594-606
-
-
Wenzel, S.C.1
Muller, R.2
-
122
-
-
28644431563
-
A wide host-range metagenomic library from a waste water treatment plant yields a novel alcohol/aldehyde dehydrogenase
-
Wexler, M., Bond, P.L., Richardson, D.J., and Johnston, A.W. (2005) A wide host-range metagenomic library from a waste water treatment plant yields a novel alcohol/aldehyde dehydrogenase. Environ Microbiol 7: 1917-1926.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1917-1926
-
-
Wexler, M.1
Bond, P.L.2
Richardson, D.J.3
Johnston, A.W.4
-
123
-
-
26844491940
-
Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor
-
Williamson, L.L., Borlee, B.R., Schloss, P.D., Guan, C., Allen, H.K., and Handelsman, J. (2005) Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor. Appl Environ Microbiol 71: 6335-6344.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 6335-6344
-
-
Williamson, L.L.1
Borlee, B.R.2
Schloss, P.D.3
Guan, C.4
Allen, H.K.5
Handelsman, J.6
-
124
-
-
73449091880
-
Functional cloning and expression of a novel Endo-alpha-1,5-L-arabinanase from a metagenomic library
-
Wong, D.W., Chan, V.J., and McCormack, A.A. (2009) Functional cloning and expression of a novel Endo-alpha-1, 5-L-arabinanase from a metagenomic library. Protein Pept Lett 16: 1435-1441.
-
(2009)
Protein Pept Lett
, vol.16
, pp. 1435-1441
-
-
Wong, D.W.1
Chan, V.J.2
McCormack, A.A.3
-
125
-
-
84883518652
-
Discovery of (hemi-) cellulase genes in a metagenomic library from a biogas digester using 454 pyrosequencing
-
Yan, X., Geng, A., Zhang, J., Wei, Y., Zhang, L., Qian, C., etal. (2013) Discovery of (hemi-) cellulase genes in a metagenomic library from a biogas digester using 454 pyrosequencing. Appl Microbiol Biotechnol 97: 8173-8182.
-
(2013)
Appl Microbiol Biotechnol
, vol.97
, pp. 8173-8182
-
-
Yan, X.1
Geng, A.2
Zhang, J.3
Wei, Y.4
Zhang, L.5
Qian, C.6
-
126
-
-
70849136832
-
Lipase diversity in glacier soil based on analysis of metagenomic DNA fragments and cell culture
-
Yuhong, Z., Shi, P., Liu, W., Meng, K., Bai, Y., Wang, G., etal. (2009) Lipase diversity in glacier soil based on analysis of metagenomic DNA fragments and cell culture. J Microbiol Biotechnol 19: 888-897.
-
(2009)
J Microbiol Biotechnol
, vol.19
, pp. 888-897
-
-
Yuhong, Z.1
Shi, P.2
Liu, W.3
Meng, K.4
Bai, Y.5
Wang, G.6
-
127
-
-
76149122485
-
Abundance of novel and diverse tfdA-like genes, encoding putative phenoxyalkanoic acid herbicide-degrading dioxygenases, in soil
-
Zaprasis, A., Liu, Y.J., Liu, S.J., Drake, H.L., and Horn, M.A. (2010) Abundance of novel and diverse tfdA-like genes, encoding putative phenoxyalkanoic acid herbicide-degrading dioxygenases, in soil. Appl Environ Microbiol 76: 119-128.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 119-128
-
-
Zaprasis, A.1
Liu, Y.J.2
Liu, S.J.3
Drake, H.L.4
Horn, M.A.5
-
128
-
-
84877292750
-
Spanning high-dimensional expression space using ribosome-binding site combinatorics
-
Zelcbuch, L., Antonovsky, N., Bar-Even, A., Levin-Karp, A., Barenholz, U., Dayagi, M., etal. (2013) Spanning high-dimensional expression space using ribosome-binding site combinatorics. Nucleic Acids Res 41: e98.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. e98
-
-
Zelcbuch, L.1
Antonovsky, N.2
Bar-Even, A.3
Levin-Karp, A.4
Barenholz, U.5
Dayagi, M.6
-
129
-
-
77958162913
-
Develop reusable and combinable designs for transcriptional logic gates
-
Zhan, J., Ding, B., Ma, R., Ma, X., Su, X., Zhao, Y., etal. (2010) Develop reusable and combinable designs for transcriptional logic gates. Mol Syst Biol 6: 388.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 388
-
-
Zhan, J.1
Ding, B.2
Ma, R.3
Ma, X.4
Su, X.5
Zhao, Y.6
|