-
1
-
-
0037052456
-
Geomicrobiology: How molecular-scale interactions underpin biogeochemical systems
-
Newman, D. K. & Banfield, J. F. Geomicrobiology: how molecular-scale interactions underpin biogeochemical systems. Science 296, 1071-1076 (2002).
-
(2002)
Science
, vol.296
, pp. 1071-1076
-
-
Newman, D.K.1
Banfield, J.F.2
-
2
-
-
34247221045
-
The role of ecological theory in microbial ecology
-
Prosser, J. I. et al. The role of ecological theory in microbial ecology. Nature Rev. Microbiol. 5, 384-392 (2007).
-
(2007)
Nature Rev. Microbiol
, vol.5
, pp. 384-392
-
-
Prosser, J.I.1
-
3
-
-
33845901507
-
Microbial ecology: Human gut microbes associated with obesity
-
Ley, R. E., Turnbaugh, P. J., Klein, S. & Gordon, J. I. Microbial ecology: human gut microbes associated with obesity. Nature 444, 1022-1023 (2006).
-
(2006)
Nature
, vol.444
, pp. 1022-1023
-
-
Ley, R.E.1
Turnbaugh, P.J.2
Klein, S.3
Gordon, J.I.4
-
4
-
-
27444438599
-
The microbial pan-genome
-
Medini, D. et al. The microbial pan-genome. Curr. Opin. Genet. Dev. 15, 589-594 (2005).
-
(2005)
Curr. Opin. Genet. Dev
, vol.15
, pp. 589-594
-
-
Medini, D.1
-
5
-
-
33645232361
-
Genomic islands and the ecology and evolution of Prochlorococcus
-
Coleman, M. L. et al. Genomic islands and the ecology and evolution of Prochlorococcus. Science 311, 1768-1770 (2006).
-
(2006)
Science
, vol.311
, pp. 1768-1770
-
-
Coleman, M.L.1
-
6
-
-
31544483932
-
Community genomics among stratified microbial assemblages in the ocean's interior
-
DeLong, E. F. et al. Community genomics among stratified microbial assemblages in the ocean's interior. Science 311, 496-503 (2006).
-
(2006)
Science
, vol.311
, pp. 496-503
-
-
DeLong, E.F.1
-
7
-
-
33644692952
-
-
Tringe, S. G. & Rubin, E. M. Metagenomics: DNA sequencing of environmental samples. Nature Rev. Genet. 6, 805-814 (2005).
-
Tringe, S. G. & Rubin, E. M. Metagenomics: DNA sequencing of environmental samples. Nature Rev. Genet. 6, 805-814 (2005).
-
-
-
-
8
-
-
33745595097
-
Using pyrosequencing to shed light on deep mine microbial ecology
-
Edwards, R. A. et al. Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics 7, 57 (2006).
-
(2006)
BMC Genomics
, vol.7
, pp. 57
-
-
Edwards, R.A.1
-
9
-
-
0141891348
-
Metagenomic analyses of an uncultured viral community from human feces
-
Breitbart, M. et al. Metagenomic analyses of an uncultured viral community from human feces. J. Bacteriol. 185, 6220-6223 (2003).
-
(2003)
J. Bacteriol
, vol.185
, pp. 6220-6223
-
-
Breitbart, M.1
-
10
-
-
0037195156
-
Genomic analysis of uncultured marine viral communities
-
Breitbart, M. et al. Genomic analysis of uncultured marine viral communities. Proc. Natl Acad. Sci. USA 99, 14250-14255 (2002).
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 14250-14255
-
-
Breitbart, M.1
-
11
-
-
35148876440
-
Metagenomic analysis of the microbial community associated with the coral Porites astreoides
-
Wegley, L., Breitbart, M., Edwards, R. A. & Rohwer, F. Metagenomic analysis of the microbial community associated with the coral Porites astreoides. Environ. Microbiol. 9, 2707-2719 (2007).
-
(2007)
Environ. Microbiol
, vol.9
, pp. 2707-2719
-
-
Wegley, L.1
Breitbart, M.2
Edwards, R.A.3
Rohwer, F.4
-
12
-
-
33751059692
-
The marine viromes of four oceanic regions
-
Angly, F. et al. The marine viromes of four oceanic regions. PLoS Biol. 4, e368 (2006).
-
(2006)
PLoS Biol
, vol.4
-
-
Angly, F.1
-
13
-
-
33644873469
-
Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing
-
Breitbart, M. & Rohwer, F. Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing. Biotechniques 39, 729-736 (2005).
-
(2005)
Biotechniques
, vol.39
, pp. 729-736
-
-
Breitbart, M.1
Rohwer, F.2
-
14
-
-
69249118591
-
Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of Bacteria, Archaea, Fungi, and viruses in soil
-
Fierer, N. et al. Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of Bacteria, Archaea, Fungi, and viruses in soil. Appl. Environ. Microbiol. 73, 7059-7066 (2007).
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 7059-7066
-
-
Fierer, N.1
-
15
-
-
25644458211
-
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
-
Overbeek, R. et al. The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res. 33, 5691-5702 (2005).
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5691-5702
-
-
Overbeek, R.1
-
16
-
-
0035479142
-
Deletional bias and the evolution of bacterial genomes
-
Mira, A., Ochman, H. & Moran, N. A. Deletional bias and the evolution of bacterial genomes. Trends Microbiol. 17, 589-596 (2001).
-
(2001)
Trends Microbiol
, vol.17
, pp. 589-596
-
-
Mira, A.1
Ochman, H.2
Moran, N.A.3
-
17
-
-
34547433545
-
Global patterns in bacterial diversity
-
Lozupone, C. A. & Knight, R. Global patterns in bacterial diversity. Proc. Natl Acad. Sci. USA 104, 11436-11440 (2007).
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 11436-11440
-
-
Lozupone, C.A.1
Knight, R.2
-
18
-
-
0027145369
-
Extreme diel fluctuations of oxygen in diffusive boundary layers surrounding stony corals
-
Shashar, N., Cohen, Y. & Loya, Y. Extreme diel fluctuations of oxygen in diffusive boundary layers surrounding stony corals. Biol. Bull. 185, 455-461 (1993).
-
(1993)
Biol. Bull
, vol.185
, pp. 455-461
-
-
Shashar, N.1
Cohen, Y.2
Loya, Y.3
-
19
-
-
33947417735
-
Regulation of sulfur assimilation pathways in Burkholderia cenocepacia: Identification of transcription factors CysB and SsuR and their role in control of target genes
-
Iwanicka-Nowicka, R. et al. Regulation of sulfur assimilation pathways in Burkholderia cenocepacia: identification of transcription factors CysB and SsuR and their role in control of target genes. J. Bacteriol. 189, 1675-1688 (2007).
-
(2007)
J. Bacteriol
, vol.189
, pp. 1675-1688
-
-
Iwanicka-Nowicka, R.1
-
20
-
-
33750505457
-
Inclusion of size fractionated fish hydrolysate in high plant protein diets for Atlantic cod, Gadus morhua
-
Aksnes, A., Hope, B., Hostmark, O. & Albrektsen, S. Inclusion of size fractionated fish hydrolysate in high plant protein diets for Atlantic cod, Gadus morhua. Aquaculture 261, 1102-1110 (2006).
-
(2006)
Aquaculture
, vol.261
, pp. 1102-1110
-
-
Aksnes, A.1
Hope, B.2
Hostmark, O.3
Albrektsen, S.4
-
21
-
-
40149098974
-
Microbial ecology of four coral atolls in the Northern Line Islands
-
Dinsdale, E. A. et al. Microbial ecology of four coral atolls in the Northern Line Islands. Plos One 3, e1584 (2008).
-
(2008)
Plos One
, vol.3
-
-
Dinsdale, E.A.1
-
22
-
-
8144228665
-
Movement of virus between biomes
-
Sano, E., Carlson, S., Wegley, L. & Rohwer, F. Movement of virus between biomes. Appl. Environ. Microbiol. 70, 5842-5846 (2004).
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 5842-5846
-
-
Sano, E.1
Carlson, S.2
Wegley, L.3
Rohwer, F.4
-
23
-
-
0001872399
-
-
ed. Craig, N. L, Gragie, R, Gellert, M. & Lambowitz, A. M, ASM, Washington DC
-
Davis, B. M. & Waldor, K. in Mobile DNA II (ed. Craig, N. L., Gragie, R., Gellert, M. & Lambowitz, A. M.) 1040-1055 (ASM, Washington DC, 2002).
-
(2002)
Mobile DNA II
, pp. 1040-1055
-
-
Davis, B.M.1
Waldor, K.2
-
24
-
-
0034111671
-
The complete genomic sequence of the marine phage Roseophage SIO1 shares homology with nonmarine phages
-
Rohwer, F. et al. The complete genomic sequence of the marine phage Roseophage SIO1 shares homology with nonmarine phages. Limnol. Oceanogr. 45, 408-418 (2000).
-
(2000)
Limnol. Oceanogr
, vol.45
, pp. 408-418
-
-
Rohwer, F.1
-
25
-
-
0041736065
-
Marine ecosystems: Bacterial photosynthesis genes in a virus
-
Mann, N. et al. Marine ecosystems: bacterial photosynthesis genes in a virus. Nature 424, 741 (2003).
-
(2003)
Nature
, vol.424
, pp. 741
-
-
Mann, N.1
-
26
-
-
0033514996
-
Evolutionary relationships among diverse bacteriophages and prophages: All the world's a phage
-
Hendrix, R. W., Smith, M. C. M., Burns, R. N. & Ford, M. E. Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage. Proc. Natl Acad. Sci. USA 96, 2192-2197 (1999).
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 2192-2197
-
-
Hendrix, R.W.1
Smith, M.C.M.2
Burns, R.N.3
Ford, M.E.4
-
28
-
-
0036597231
-
Bacteriophage: Evolution of the majority
-
Hendrix, R. W. Bacteriophage: evolution of the majority. Theor. Popul. Biol. 61, 471-480 (2002).
-
(2002)
Theor. Popul. Biol
, vol.61
, pp. 471-480
-
-
Hendrix, R.W.1
-
29
-
-
0033941482
-
Assessment of microbial diversity in four southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis
-
Dunbar, J., Ticknor, L. O. & Kuske, C. R. Assessment of microbial diversity in four southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis. Appl. Environ. Microbiol. 66, 2943-2950 (2000).
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 2943-2950
-
-
Dunbar, J.1
Ticknor, L.O.2
Kuske, C.R.3
-
30
-
-
32844465575
-
Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea
-
Frigaard, N.-U., Martinez, A., Mincer, T. J. & Delong, E. F. Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea. Nature 439, 847-850 (2006).
-
(2006)
Nature
, vol.439
, pp. 847-850
-
-
Frigaard, N.-U.1
Martinez, A.2
Mincer, T.J.3
Delong, E.F.4
-
31
-
-
34248174905
-
A test of the efficacy of whole-genome amplification on DNA obtained from low-yield samples
-
Gunn, M. R. et al. A test of the efficacy of whole-genome amplification on DNA obtained from low-yield samples. Mol. Ecol. Notes 7, 393-399 (2007).
-
(2007)
Mol. Ecol. Notes
, vol.7
, pp. 393-399
-
-
Gunn, M.R.1
-
32
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies, M. et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437, 376-380 (2005).
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
-
33
-
-
84945510284
-
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
-
submitted
-
Meyer, F. et al. The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinf. (submitted).
-
BMC Bioinf
-
-
Meyer, F.1
-
34
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis, T. Z. et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl. Environ. Microbiol. 72, 5069-5072 (2006).
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
-
35
-
-
33846072878
-
The ribosomal database project (RDP-II): Introducing myRDP space and quality controlled public data
-
Cole, J. R. et al. The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Nucleic Acids Res. 35, D169-D172 (2007).
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Cole, J.R.1
|