-
3
-
-
0036270789
-
Microbial diversity and function in soil: From genes to ecosystems
-
Torsvik, V., Daae, F. L., Sandaa, R.-A. & Øvreås, L. Microbial diversity and function in soil: from genes to ecosystems. Curr. Opin. Microbiol. 5, 240-245 (2002).
-
(2002)
Curr. Opin. Microbiol.
, vol.5
, pp. 240-245
-
-
Torsvik, V.1
Daae, F.L.2
Sandaa, R.-A.3
Øvreås, L.4
-
4
-
-
0032219204
-
Novel techniques for analysing microbial diversity in natural and perturbed environments
-
Torsvik V., Daae, F L., Sandaa, R.-A. & Øvreås, L. Novel techniques for analysing microbial diversity in natural and perturbed environments. J. Biotech. 64, 53-62 (1998).
-
(1998)
J. Biotech.
, vol.64
, pp. 53-62
-
-
Torsvik, V.1
Daae, F.L.2
Sandaa, R.-A.3
Øvreås, L.4
-
5
-
-
0030497690
-
Total bacterial diversity in soil and sediment communities
-
Torsvik, V., Sorheim, R. & Goksoyr, J. Total bacterial diversity in soil and sediment communities. J. Ind. Microbiol. 17, 170-178 (1996).
-
(1996)
J. Ind. Microbiol.
, vol.17
, pp. 170-178
-
-
Torsvik, V.1
Sorheim, R.2
Goksoyr, J.3
-
6
-
-
0033603539
-
Phylogenic classification and the universal tree
-
Doolittle, W. Phylogenic classification and the universal tree. Science 284, 2124-2128 (1999).
-
(1999)
Science
, vol.284
, pp. 2124-2128
-
-
Doolittle, W.1
-
7
-
-
0027869306
-
Relationship between habitable pore space, soil biota, and mineralization rates in grassland soils
-
Hassink, J., Bouwman, L. A., Zwart, K. B. & Brussaard, L. Relationship between habitable pore space, soil biota, and mineralization rates in grassland soils. Soil. Biol. Biochem. 25, 47-55 (1993).
-
(1993)
Soil Biol. Biochem.
, vol.25
, pp. 47-55
-
-
Hassink, J.1
Bouwman, L.A.2
Zwart, K.B.3
Brussaard, L.4
-
8
-
-
34250088572
-
Microenvironments of soil microorganisms
-
Foster, R. C. Microenvironments of soil microorganisms. Biol. Fertil. Soils 6, 189-203 (1988).
-
(1988)
Biol. Fertil. Soils
, vol.6
, pp. 189-203
-
-
Foster, R.C.1
-
9
-
-
0023469536
-
Microbial biomass response to a rapid change increase in water potential when dry soil is wetted
-
Kieft, T. L., Soroker, E. & Firestone, M. R. Microbial biomass response to a rapid change increase in water potential when dry soil is wetted. Soil Biol. Biochem. 19, 119-126 (1987).
-
(1987)
Soil Biol. Biochem.
, vol.19
, pp. 119-126
-
-
Kieft, T.L.1
Soroker, E.2
Firestone, M.R.3
-
10
-
-
0032499758
-
Prokaryotes: The unseen majority
-
Whitman, W. B., Coleman, D. C. & Wiebe, W. J. Prokaryotes: the unseen majority. Proc. Natl Acad. Sci. USA 95, 6578-6583 (1998).
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 6578-6583
-
-
Whitman, W.B.1
Coleman, D.C.2
Wiebe, W.J.3
-
11
-
-
0001461233
-
Tapping into microbial diversity for natural products drug discovery
-
Osburne, M. S., Grossmann, T. H., August, P. R. & MacNeil, I. A. Tapping into microbial diversity for natural products drug discovery. ASM News 66, 411-417 (2000).
-
(2000)
ASM News
, vol.66
, pp. 411-417
-
-
Osburne, M.S.1
Grossmann, T.H.2
August, P.R.3
MacNeil, I.A.4
-
12
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann, R. I., Ludwig, W. & Schleifer, K. H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59, 143-169 (1995).
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
13
-
-
0025215665
-
High diversity in DNA of soil bacteria
-
Torsvik, V., Goksoyr, J. & Daae, F. L. High diversity in DNA of soil bacteria. Appl. Environ. Microbiol. 56, 782-787 (1990).
-
(1990)
Appl. Environ. Microbiol.
, vol.56
, pp. 782-787
-
-
Torsvik, V.1
Goksoyr, J.2
Daae, F.L.3
-
14
-
-
2142687113
-
Laboratory cultivation of widespread and previously uncultured soil bacteria
-
Joseph, S. J., Hugenholtz, P., Sangwan, P., Osborne, C. A. & Janssen, P. H. Laboratory cultivation of widespread and previously uncultured soil bacteria. Appl. Environ. Microbiol. 69, 7210-7215 (2003).
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 7210-7215
-
-
Joseph, S.J.1
Hugenholtz, P.2
Sangwan, P.3
Osborne, C.A.4
Janssen, P.H.5
-
15
-
-
0037052320
-
Isolating "uncultivable" microorganisms in a simulated natural environment
-
Kaeberlein, T., Lewis, K. & Epstein, S. Isolating "uncultivable" microorganisms in a simulated natural environment. Science 296, 1127-1129 (2002).
-
(2002)
Science
, vol.296
, pp. 1127-1129
-
-
Kaeberlein, T.1
Lewis, K.2
Epstein, S.3
-
16
-
-
0037180507
-
Cultivating the uncultured
-
Zengler, K. et al. Cultivating the uncultured. Proc. Natl Acad. Sci. USA 99, 15684-15686 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 15684-15686
-
-
Zengler, K.1
-
17
-
-
0032192790
-
Molecular biological access to the chemistry of unknown soil microbes: A new frontier for natural products
-
Handelsman, J., Rondon, M. R., Brady, S. F., Clardy, J. & Goodman, R. M. Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products. Chem. Biol. 5, R245-R249 (1998).
-
(1998)
Chem. Biol.
, vol.5
-
-
Handelsman, J.1
Rondon, M.R.2
Brady, S.F.3
Clardy, J.4
Goodman, R.M.5
-
18
-
-
0033214501
-
The earth's bounty: Assessing and accessing soil microbial diversity
-
Rondon, M. R., Goodman, R. M. & Handelsman, J. The earth's bounty: assessing and accessing soil microbial diversity. TIBTECH 17, 403-409 (1999).
-
(1999)
TIBTECH
, vol.17
, pp. 403-409
-
-
Rondon, M.R.1
Goodman, R.M.2
Handelsman, J.3
-
19
-
-
12744281935
-
The extraction and purification of microbial DNA from sediments
-
Ogram, A., Sayler, G. S. & Barkay, T. The extraction and purification of microbial DNA from sediments. J. Microbiol. Methods 7, 57-66 (1987).
-
(1987)
J. Microbiol. Methods
, vol.7
, pp. 57-66
-
-
Ogram, A.1
Sayler, G.S.2
Barkay, T.3
-
20
-
-
0023866522
-
DNA probe method for the detection of specific microorganisms in the soil bacterial community
-
Holben, W. E., Jansson, J. K., Chelm, B. K. & Tiedje, J. M. DNA probe method for the detection of specific microorganisms in the soil bacterial community. Appl. Environ. Microbiol. 54, 703-711 (1988).
-
(1988)
Appl. Environ. Microbiol.
, vol.54
, pp. 703-711
-
-
Holben, W.E.1
Jansson, J.K.2
Chelm, B.K.3
Tiedje, J.M.4
-
21
-
-
0024218461
-
Recovery of DNA from soils and sediments
-
Steffan, R. J., Goksoyr, J., Bej, A. K. & Atlas, R. M. Recovery of DNA from soils and sediments. Appl. Environ. Microbiol. 54, 2908-2915 (1988).
-
(1988)
Appl. Environ. Microbiol.
, vol.54
, pp. 2908-2915
-
-
Steffan, R.J.1
Goksoyr, J.2
Bej, A.K.3
Atlas, R.M.4
-
22
-
-
0026631342
-
Development and application of a new method to extract bacterial DNA from soil based on separation of bacteria from soil with cation-exchange resin
-
Jacobsen, C. S. & Rasmussen, O. F. Development and application of a new method to extract bacterial DNA from soil based on separation of bacteria from soil with cation-exchange resin. Appl. Environ. Microbiol. 58, 2458-2462 (1992).
-
(1992)
Appl. Environ. Microbiol.
, vol.58
, pp. 2458-2462
-
-
Jacobsen, C.S.1
Rasmussen, O.F.2
-
23
-
-
0028985414
-
Evaluation of methods for extraction of bacteria from soil
-
Lindahl, V. & Bakken, L. R. Evaluation of methods for extraction of bacteria from soil. FEMS Microbiol. Ecol. 16, 135-142 (1995).
-
(1995)
FEMS Microbiol. Ecol.
, vol.16
, pp. 135-142
-
-
Lindahl, V.1
Bakken, L.R.2
-
24
-
-
0030070838
-
DNA recovery from soils of diverse composition
-
Zhou, J. M., Bruns, M. A. & Tiedje, J. M. DNA recovery from soils of diverse composition, Appl. Environ. Microbiol. 62, 316-322 (1996).
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 316-322
-
-
Zhou, J.M.1
Bruns, M.A.2
Tiedje, J.M.3
-
25
-
-
0032703237
-
Evaluation and optimization of DNA extraction for soil and sediment samples
-
Miller, D. N., Bryant, J. E., Madsen, E. L. & Ghiorse, W. C. Evaluation and optimization of DNA extraction for soil and sediment samples. Appl. Environ. Microbiol. 65, 4715-4724 (1999).
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 4715-4724
-
-
Miller, D.N.1
Bryant, J.E.2
Madsen, E.L.3
Ghiorse, W.C.4
-
26
-
-
0035487188
-
Simultaneous recovery of RNA and DNA from soils and sediments
-
Hurt, R. A. et al. Simultaneous recovery of RNA and DNA from soils and sediments. Appl. Environ. Microbiol. 67, 4495-4503 (2001).
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 4495-4503
-
-
Hurt, R.A.1
-
27
-
-
0035213531
-
Comparison of rapid DNA extraction methods applied to contrasting New Zealand soils
-
Lloyd-Jones, G. & Hunter, D. W. F. Comparison of rapid DNA extraction methods applied to contrasting New Zealand soils. Soil Biol. Biochem. 33, 2053-2059 (2001).
-
(2001)
Soil Biol. Biochem.
, vol.33
, pp. 2053-2059
-
-
Lloyd-Jones, G.1
Hunter, D.W.F.2
-
28
-
-
0032914126
-
Levels at bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning
-
Dunbar, J., Takata, S., Barns, S. M., Davis, J. A. & Kuske, C. R. Levels at bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning. Appl. Environ. Microbiol. 65, 1662-1669 (1999).
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1662-1669
-
-
Dunbar, J.1
Takata, S.2
Barns, S.M.3
Davis, J.A.4
Kuske, C.R.5
-
29
-
-
0034127563
-
Population and community level approaches for analysing microbial diversity in natural environments
-
Øvreås, L. Population and community level approaches for analysing microbial diversity in natural environments. Ecol. Letts. 3, 236-251 (2000).
-
(2000)
Ecol. Letts.
, vol.3
, pp. 236-251
-
-
Øvreås, L.1
-
30
-
-
0036269049
-
Empirical and theoretical bacterial diversity in four Arizona soils
-
Dunbar, J., Barns, S. M., Ticknor, L. O. & Kuske, C. R. Empirical and theoretical bacterial diversity in four Arizona soils. Appl. Environ. Microbiol. 68, 3035-3045 (2002).
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 3035-3045
-
-
Dunbar, J.1
Barns, S.M.2
Ticknor, L.O.3
Kuske, C.R.4
-
31
-
-
0036136025
-
Spatial and resource factors influencing high microbial diversity in soil
-
Zhou, J. et al. Spatial and resource factors influencing high microbial diversity in soil. Appl. Environ. Microbiol. 68, 326-334 (2002).
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 326-334
-
-
Zhou, J.1
-
32
-
-
2342559833
-
Diazotrophic community structure and function in two successional stages of biological soil crusts from the Colorado plateau and Chihuahuan desert
-
Yeager, C. M. et al. Diazotrophic community structure and function in two successional stages of biological soil crusts from the Colorado plateau and Chihuahuan desert. Appl. Environ. Microbiol. 70, 973-983 (2004).
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 973-983
-
-
Yeager, C.M.1
-
33
-
-
0030483038
-
Genetic diversity of soil microorganisms assessed by analysis of hsp70 (dnaK) sequences
-
Yap, W. H., Li, X., Soong, T. W. & Davies, J. E. Genetic diversity of soil microorganisms assessed by analysis of hsp70 (dnaK) sequences. J. Industr. Microbiol. 17, 179-184 (1996).
-
(1996)
J. Industr. Microbiol.
, vol.17
, pp. 179-184
-
-
Yap, W.H.1
Li, X.2
Soong, T.W.3
Davies, J.E.4
-
34
-
-
0036135250
-
Grassland management regimens reduce small-scale heterogeneity and species diversity of β-proteobacterial ammonia oxidisers
-
Webster, G.. Embley, T. M. & Posser, J. L. Grassland management regimens reduce small-scale heterogeneity and species diversity of β-proteobacterial ammonia oxidisers. Appl. Environ. Microbiol. 68, 20-30 (2002).
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 20-30
-
-
Webster, G.1
Embley, T.M.2
Posser, J.L.3
-
35
-
-
0032863699
-
Construction of environmental DNA libraries in Escherichia coli and screening for the presence of genes conferring utilization of 4-hydroxybutyrate
-
Henne, A., Daniel, R., Schmitz, R. A. & Gottschalk, G. Construction of environmental DNA libraries in Escherichia coli and screening for the presence of genes conferring utilization of 4-hydroxybutyrate. Appl. Environ. Microbiol. 65, 3901-3907 (1999).
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3901-3907
-
-
Henne, A.1
Daniel, R.2
Schmitz, R.A.3
Gottschalk, G.4
-
36
-
-
0034722959
-
Long-chain N-acyl amino acid antibiotics isolated from heterologously expressed environmental DNA
-
Brady, S. F. & Clardy, J. Long-chain N-acyl amino acid antibiotics isolated from heterologously expressed environmental DNA. J. Am. Chem. Soc. 122, 12903-12904 (2000).
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 12903-12904
-
-
Brady, S.F.1
Clardy, J.2
-
37
-
-
18844481269
-
Cloning the soil metagenome: A strategy for accessing the genetic and functional diversity of uncultured microorganisms
-
Rondon, M. R. et al. Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms. Appl. Environ. Microbiol. 66, 2541-2547 (2000).
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 2541-2547
-
-
Rondon, M.R.1
-
38
-
-
0033916660
-
Screening of environmental DNA libraries for the presence of genes conferring lipolytic activity on Escherichia coli
-
Henne, A., Schmitz, R, A., Bömeke, M., Gottschalk, G. & Daniel, R. Screening of environmental DNA libraries for the presence of genes conferring lipolytic activity on Escherichia coli. Appl. Environ. Microbiol. 66, 3113-3116 (2000).
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 3113-3116
-
-
Henne, A.1
Schmitz, R.A.2
Bömeke, M.3
Gottschalk, G.4
Daniel, R.5
-
39
-
-
8644224796
-
Screening for novel lipolytic enzymes from uncultured soil microorganisms
-
Lee, S.-W. et al. Screening for novel lipolytic enzymes from uncultured soil microorganisms. Appl. Microbiol. Biotechnol. 65, 720-726 (2004).
-
(2004)
Appl. Microbiol. Biotechnol.
, vol.65
, pp. 720-726
-
-
Lee, S.-W.1
-
40
-
-
0037010721
-
Metagenome - A challenging source of enzyme discovery
-
Lorenz, R & Schleper, C. Metagenome - a challenging source of enzyme discovery. J. Mol. Catal. B Enzym. 19, 13-19 (2002).
-
(2002)
J. Mol. Catal. B Enzym.
, vol.19
, pp. 13-19
-
-
Lorenz, R.1
Schleper, C.2
-
41
-
-
0036323668
-
Bacterial alkaline proteases: Molecular approaches and industrial applications
-
Gupta, R., Berg, Q. K. & Lorenz, P. Bacterial alkaline proteases: molecular approaches and industrial applications. Appl. Microbiol. Biotechnol. 59, 15-32 (2002).
-
(2002)
Appl. Microbiol. Biotechnol.
, vol.59
, pp. 15-32
-
-
Gupta, R.1
Berg, Q.K.2
Lorenz, P.3
-
42
-
-
0035091812
-
Rapid extraction and purification of environmental DNA for molecular cloning applications and molecular diversity studies
-
Santosa, D. A. Rapid extraction and purification of environmental DNA for molecular cloning applications and molecular diversity studies. Mol. Biotechnol. 17, 59-64 (2001).
-
(2001)
Mol. Biotechnol.
, vol.17
, pp. 59-64
-
-
Santosa, R.A.1
-
43
-
-
0037974521
-
Metagenomes of complex microbial consortia derived from different soils as sources for novel genes conferring formation of carbonyls from short-chain polyols on Escherichia coli
-
Knietsch, A., Waschkowitz, T., Bowien, S., Henne, A. & Daniel, R. Metagenomes of complex microbial consortia derived from different soils as sources for novel genes conferring formation of carbonyls from short-chain polyols on Escherichia coli. J. Mol. Microbiol. Biotechnol. 5, 46-56 (2003).
-
(2003)
J. Mol. Microbiol. Biotechnol.
, vol.5
, pp. 46-56
-
-
Knietsch, A.1
Waschkowitz, T.2
Bowien, S.3
Henne, A.4
Daniel, R.5
-
44
-
-
0037135614
-
A novel, high performance enzyme for starch liquefaction. Discovery and optimization of a low pH, thermostable α-amylase
-
Richardson, T. H. et al. A novel, high performance enzyme for starch liquefaction. Discovery and optimization of a low pH, thermostable α-amylase. J. Biol. Chem. 277, 26501-26507 (2002).
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 26501-26507
-
-
Richardson, T.H.1
-
45
-
-
10444244967
-
Characterization of a novel amylolytic enzyme encoded by a gene from a soil-derive metagenomic library
-
Yun, J. et al. Characterization of a novel amylolytic enzyme encoded by a gene from a soil-derive metagenomic library. Appl. Environ. Microbiol. 70, 7229-7235 (2004).
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 7229-7235
-
-
Yun, J.1
-
46
-
-
0034632413
-
Novel natural products from soil DNA libraries in a streptomycete host
-
Wang, G. Y. et al. Novel natural products from soil DNA libraries in a streptomycete host. Org. Lett. 2, 2401-2404 (2000).
-
(2000)
Org. Lett.
, vol.2
, pp. 2401-2404
-
-
Wang, G.Y.1
-
47
-
-
0035079979
-
Expression and isolation of antimicrobial small molecules from soil DNA libraries
-
MacNeil, I. A. et al. Expression and isolation of antimicrobial small molecules from soil DNA libraries. J. Mol. Microbiol. Biotechnol. 3, 301-308 (2001).
-
(2001)
J. Mol. Microbiol. Biotechnol.
, vol.3
, pp. 301-308
-
-
MacNeil, I.A.1
-
48
-
-
0036727242
-
Isolation of antibiotics turbomycin A and B from a metagenomic library of soil microbial DNA
-
Gillespie, D. E. et al. Isolation of antibiotics turbomycin A and B from a metagenomic library of soil microbial DNA. Appl. Environ. Microbiol. 68, 4310-4306 (2002).
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 4306-4310
-
-
Gillespie, D.E.1
-
49
-
-
0346035740
-
Recombinant environmental libraries provide access to microbial diversity for drug discovery from natural products
-
Courtois S. et al. Recombinant environmental libraries provide access to microbial diversity for drug discovery from natural products. Appl. Environ. Microbiol. 69, 49-55 (2003).
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 49-55
-
-
Courtois, S.1
-
50
-
-
4344587758
-
Uncultured soil bacteria are a reservoir of new antibiotic resistance genes
-
Riesenfeld, C. S., Goodman, R. M. & Handelsman, J. Uncultured soil bacteria are a reservoir of new antibiotic resistance genes. Environ. Microbiol. 6, 981-989 (2004).
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 981-989
-
-
Riesenfeld, C.S.1
Goodman, R.M.2
Handelsman, J.3
-
51
-
-
0034749815
-
+ antiporter activity on Escherichia coli: Characterization of the recovered genes and the corresponding gone products
-
+ antiporter activity on Escherichia coli: characterization of the recovered genes and the corresponding gone products. J. Bacteriol. 183, 6645-6653 (2001).
-
(2001)
J. Bacteriol.
, vol.183
, pp. 6645-6653
-
-
Majernik, A.1
Gottschalk, G.2
Daniel, R.3
-
52
-
-
0026764237
-
Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment
-
Liesack, W. & Stackebrandt, E. Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J. Bacteriol. 174, 5072-5078 (1992).
-
(1992)
J. Bacteriol.
, vol.174
, pp. 5072-5078
-
-
Liesack, W.1
Stackebrandt, E.2
-
53
-
-
0035349953
-
DNA extractions from soils: Old bias for new microbial diversity analysis methods
-
Martin-Laurent, F. et al. DNA extractions from soils: old bias for new microbial diversity analysis methods. Appl. Environ. Microbiol. 67, 2354-2359 (2001).
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 2354-2359
-
-
Martin-Laurent, F.1
-
54
-
-
0027202733
-
Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and yeast
-
Tebbe, C. C. & Vahjen, W. Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and yeast. Appl. Environ. Microbiol. 59, 2657-2665 (1993).
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 2657-2665
-
-
Tebbe, C.C.1
Vahjen, W.2
-
55
-
-
0026597527
-
Detection of low numbers of bacterial cells in soils and sediments
-
Tsai, Y.-L., & Olson, B. H. Detection of low numbers of bacterial cells in soils and sediments. Appl. Environ. Microbiol. 58, 754-757 (1992).
-
(1992)
Appl. Environ. Microbiol.
, vol.58
, pp. 754-757
-
-
Tsai, Y.-L.1
Olson, B.H.2
-
56
-
-
0035206784
-
Quantification of bacterial subgroups in soil: Comparison of DNA extracted directly from soil or from cells previously released by density gradient centrifugation
-
Courtois, S. et al. Quantification of bacterial subgroups in soil: comparison of DNA extracted directly from soil or from cells previously released by density gradient centrifugation. Environ. Microbiol. 3, 431-439 (2001).
-
(2001)
Environ. Microbiol.
, vol.3
, pp. 431-439
-
-
Courtois, S.1
-
57
-
-
0037447816
-
Efficient recovery of environmental DNA for expression cloning by indirect methods
-
Gabor, E. M., de Vries, E. J. & Janssen, D. B. Efficient recovery of environmental DNA for expression cloning by indirect methods. FEMS Microbiol. Ecol. 44, 153-163 (2003).
-
(2003)
FEMS Microbiol. Ecol.
, vol.44
, pp. 153-163
-
-
Gabor, E.M.1
de Vries, E.J.2
Janssen, D.B.3
-
58
-
-
4344693429
-
Characterization of large-insert DNA libraries from soil for environmental genomic studies of Archaea
-
Treusch, A. H. et al. Characterization of large-insert DNA libraries from soil for environmental genomic studies of Archaea. Environ Microbiol. 6, 970-980 (2004).
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 970-980
-
-
Treusch, A.H.1
-
59
-
-
0034932267
-
PCR-SSCP comparison of 16S rDNA sequence diversity in soil DNA obtained using different isolation and purification methods
-
Stach, J. E. M., Bathe, S., Clapp, J. P. & Burns, R. G. PCR-SSCP comparison of 16S rDNA sequence diversity in soil DNA obtained using different isolation and purification methods. FEMS Microbiol. Ecol. 36, 139-151 (2001).
-
(2001)
FEMS Microbiol. Ecol.
, vol.36
, pp. 139-151
-
-
Stach, J.E.M.1
Bathe, S.2
Clapp, J.P.3
Burns, R.G.4
-
60
-
-
0028912711
-
Comparison of methods of DNA extraction from stream sediments
-
Leff, L. G., Dana, J. R., McArthur, J. V. & Shimkets, L. J. Comparison of methods of DNA extraction from stream sediments. Appl. Environ. Microbiol. 61, 1141-1143 (1995).
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 1141-1143
-
-
Leff, L.G.1
Dana, J.R.2
McArthur, J.V.3
Shimkets, L.J.4
-
61
-
-
8744289725
-
Long-chain N-acyltyrosine synthases from environmental DNA
-
Brady, S. F., Chao, C. J. & Clardy, J. Long-chain N-acyltyrosine synthases from environmental DNA. Appl. Environ. Microbiol. 70, 46865-46870 (2004).
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 46865-46870
-
-
Brady, S.F.1
Chao, C.J.2
Clardy, J.3
-
62
-
-
13944259584
-
Genetically modified bacterial strains and novel bacterial artificial chromosome shuttle vectors for constructing environmental libraries and detecting heterologous natural products in multiple expression hosts
-
Martinez, A. et al. Genetically modified bacterial strains and novel bacterial artificial chromosome shuttle vectors for constructing environmental libraries and detecting heterologous natural products in multiple expression hosts. Appl. Environ. Microbiol. 70, 2452-2463 (2004).
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 2452-2463
-
-
Martinez, A.1
-
63
-
-
4344561834
-
Construction, characterization, and use of small-insert gene banks of DNA isolated from soil and enrichment cultures for the recovery of novel amidases
-
Gabor, E. M., de Vries, E. J. & Janssen, D. B. Construction, characterization, and use of small-insert gene banks of DNA isolated from soil and enrichment cultures for the recovery of novel amidases. Environ. Microbiol. 6, 948-958 (2004).
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 948-958
-
-
Gabor, E.M.1
de Vries, E.J.2
Janssen, D.B.3
-
64
-
-
0035963668
-
Cloning and heterologous expression of a natural product biosynthetic gene cluster from eDNA
-
Brady, S. F., Chao, C. J., Handelsman, J. & Clardy, J. Cloning and heterologous expression of a natural product biosynthetic gene cluster from eDNA. Org. Lett. 3, 1981-1984 (2001).
-
(2001)
Org. Lett.
, vol.3
, pp. 1981-1984
-
-
Brady, S.F.1
Chao, C.J.2
Handelsman, J.3
Clardy, J.4
-
65
-
-
0036802038
-
First insight into the genome of an uncultivated crenarchaeota from soil
-
Quaiser, A. et al. First insight into the genome of an uncultivated crenarchaeota from soil. Environ. Microbiol. 4, 603-611 (2002).
-
(2002)
Environ. Microbiol.
, vol.4
, pp. 603-611
-
-
Quaiser, A.1
-
66
-
-
0042126088
-
Acidobacteria form a coherent but highly diverse group within the bacterial domain: Evidence from environmental genomics
-
Quaiser, A. et al. Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics. Mol. Microbiol. 50, 563-575 (2003).
-
(2003)
Mol. Microbiol.
, vol.50
, pp. 563-575
-
-
Quaiser, A.1
-
67
-
-
4644371642
-
Phylogenetic analysis of polyketide synthase I domains from soil metagenomic libraries allows selection of promising clones
-
Ginolhac, A. et al. Phylogenetic analysis of polyketide synthase I domains from soil metagenomic libraries allows selection of promising clones. Appl. Environ. Microbiol. 70, 5522-5527 (2004).
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 5522-5527
-
-
Ginolhac, A.1
-
68
-
-
10944226351
-
Metagenomics: Genomic analysis of microbial communities
-
Riesenfeld, C. S., Schloss, R. D. & Handelsman, J. Metagenomics: genomic analysis of microbial communities. Annu. Rev. Genet. 38, 525-552 (2004).
-
(2004)
Annu. Rev. Genet.
, vol.38
, pp. 525-552
-
-
Riesenfeld, C.S.1
Schloss, R.D.2
Handelsman, J.3
-
69
-
-
0038185214
-
A census of rRNA genes and linked genomic sequences within a soil metagenomic library
-
Liles, M. R., Manske, B. F., Bintrim, S. B., Handelsman, J. & Goodman, R. M. A census of rRNA genes and linked genomic sequences within a soil metagenomic library. Appl. Environ. Microbiol. 69, 2684-2691 (2003).
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 2684-2691
-
-
Liles, M.R.1
Manske, B.F.2
Bintrim, S.B.3
Handelsman, J.4
Goodman, R.M.5
-
70
-
-
4344663593
-
Exploring nitrilase sequence for enantioselective catalysis
-
Robertson, D. E. et al. Exploring nitrilase sequence for enantioselective catalysis. Appl. Environ. Microbiol. 70, 2429-2436 (2004).
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 2429-2436
-
-
Robertson, D.E.1
-
71
-
-
0041973514
-
Soil-based gene discovery: A new technology to accelerate and broaden biocatalytic applications
-
Gray, K. A., Richardson, T. H., Robertson, D. E., Swanson, P. E. & Subramanian, M. V. Soil-based gene discovery: a new technology to accelerate and broaden biocatalytic applications. Adv. Appl. Microbiol. 52, 1-27 (2003).
-
(2003)
Adv. Appl. Microbiol.
, vol.52
, pp. 1-27
-
-
Gray, K.A.1
Richardson, T.H.2
Robertson, D.E.3
Swanson, P.E.4
Subramanian, M.V.5
-
72
-
-
0037666090
-
Synthesis of long-chain fatty acid enol esters isolated from an environmental DNA clone
-
Brady, S. F. & Clardy, J. Synthesis of long-chain fatty acid enol esters isolated from an environmental DNA clone. Org. Lett. 5, 121-124 (2003).
-
(2003)
Org. Lett.
, vol.5
, pp. 121-124
-
-
Brady, S.F.1
Clardy, J.2
-
73
-
-
0037189889
-
New natural product families from an environmental DNA (eDNA) gene cluster
-
Brady, S. F., Chao, C. J. & Clardy, J. New natural product families from an environmental DNA (eDNA) gene cluster. J. Am. Chem. Soc. 124, 9968-9969 (2002).
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 9968-9969
-
-
Brady, S.F.1
Chao, C.J.2
Clardy, J.3
-
74
-
-
0030860238
-
Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
-
Borneman, J. & Triplett, E. W. Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl. Environ. Microbiol. 63, 2647-2653 (1997).
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 2647-2653
-
-
Borneman, J.1
Triplett, E.W.2
-
75
-
-
0030690924
-
A study of iterative type II polyketide synthases, using bacterial genes cloned from soil DNA: A means to access and use genes from uncultured microorganisms
-
Seow, K.-T. et al. A study of iterative type II polyketide synthases, using bacterial genes cloned from soil DNA: a means to access and use genes from uncultured microorganisms. J. Bacteriol. 179, 7360-7368 (1997).
-
(1997)
J. Bacteriol.
, vol.179
, pp. 7360-7368
-
-
Seow, K.-T.1
-
76
-
-
0035462106
-
DNA from uncultured organisms as a source of 2,5-diketo-D-gluconic acid reductases
-
Eschenfeldt W. H. et al. DNA from uncultured organisms as a source of 2,5-diketo-D-gluconic acid reductases. Appl. Environ. Microbiol. 67, 4206-4214 (2001).
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 4206-4214
-
-
Eschenfeldt, W.H.1
-
77
-
-
0035899963
-
Rapid and specific identification of nitrile hydratase (Nhase)-encoding genes
-
Precigou, S., Goulas, P. & Duran, R. Rapid and specific identification of nitrile hydratase (Nhase)-encoding genes. FEMS Microbiol. Lett. 204, 155-161 (2001).
-
(2001)
FEMS Microbiol. Lett.
, vol.204
, pp. 155-161
-
-
Precigou, S.1
Goulas, P.2
Duran, R.3
-
79
-
-
0035514941
-
Gene cassette PCR: Sequence-independent recovery of entire genes from environmental DNA
-
Stokes, H. W. et al. Gene cassette PCR: sequence-independent recovery of entire genes from environmental DNA. Appl. Environ. Microbiol. 67, 5240-5246 (2001).
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 5240-5246
-
-
Stokes, H.W.1
-
80
-
-
0035656126
-
Development and evaluation of functional gene arrays for detection of selected genes in the environment
-
Wu, L. et al. Development and evaluation of functional gene arrays for detection of selected genes in the environment. Appl. Environ. Microbiol. 67, 5780-5790 (2001).
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 5780-5790
-
-
Wu, L.1
-
81
-
-
0036624982
-
Challenges in applying microarrays to environmental studies
-
Zhou, J. & Thompson, D. K. Challenges in applying microarrays to environmental studies. Curr. Opin. Biotechnol. 13, 204-207 (2002).
-
(2002)
Curr. Opin. Biotechnol.
, vol.13
, pp. 204-207
-
-
Zhou, J.1
Thompson, D.K.2
-
82
-
-
0036193078
-
Quantitative detection of microbial genes by using DNA microarrays
-
Cho, J.-C. & Tiedje, J. M. Quantitative detection of microbial genes by using DNA microarrays. Appl. Environ. Microbiol. 68, 1425-1430 (2002).
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 1425-1430
-
-
Cho, J.-C.1
Tiedje, J.M.2
-
83
-
-
0141564886
-
Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communities
-
Denef, V. J. et al. Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communities. Environ. Microbiol. 5, 933-943 (2003).
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 933-943
-
-
Denef, V.J.1
-
84
-
-
0042530104
-
Metagenomic profiling: Microarray analysis of an environmental genomic library
-
Sebat, J. L., Colwell, F. S. & Crawford, R. L. Metagenomic profiling: microarray analysis of an environmental genomic library. Appl. Environ. Microbiol. 69, 4927-4934 (2003).
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 4927-4934
-
-
Sebat, J.L.1
Colwell, F.S.2
Crawford, R.L.3
-
85
-
-
0037335924
-
Construction and screening of metagenomic libraries derived from enrichment cultures: Generation of a gene bank for genes conferring alcohol oxidoreductase activity on Escherichia coli
-
Knietsch, A., Waschkowitz, T., Bowien, S., Henne, A. & Daniel, R. Construction and screening of metagenomic libraries derived from enrichment cultures: generation of a gene bank for genes conferring alcohol oxidoreductase activity on Escherichia coli. Appl. Environ. Microbiol. 69, 1408-1416 (2003).
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 1408-1416
-
-
Knietsch, A.1
Waschkowitz, T.2
Bowien, S.3
Henne, A.4
Daniel, R.5
-
86
-
-
0035163543
-
Direct cloning from enrichment cultures, a reliable strategy for isolation of complete operons and genes from microbial consortia
-
Entcheva, P., Liebl, W., Johann, A., Hartsch, T. & Streit, W. Direct cloning from enrichment cultures, a reliable strategy for isolation of complete operons and genes from microbial consortia. Appl. Environ. Microbiol. 67, 89-99 (2001).
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 89-99
-
-
Entcheva, P.1
Liebl, W.2
Johann, A.3
Hartsch, T.4
Streit, W.5
-
87
-
-
0142104341
-
Prospecting for novel biocatalysts in a soil metagenome
-
Voget, S. et al. Prospecting for novel biocatalysts in a soil metagenome. Appl. Environ. Microbiol. 69, 6235-6242 (2003).
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 6235-6242
-
-
Voget, S.1
-
88
-
-
2942576144
-
The soil metagenome - A rich resource for the discovery of novel natural products
-
Daniel, R. The soil metagenome - a rich resource for the discovery of novel natural products. Curr. Opin. Microbiol. 15, 199-204 (2004).
-
(2004)
Curr. Opin. Microbiol.
, vol.15
, pp. 199-204
-
-
Daniel, R.1
-
89
-
-
0038482074
-
Stable-isotope probing of nucleic acids: A window to the function of uncultured microorganisms
-
Radajewski, S., McDonald, I. R. & Murrell, J. C. Stable-isotope probing of nucleic acids: a window to the function of uncultured microorganisms. Curr. Opin. Biotechnol. 14, 296-302 (2003).
-
(2003)
Curr. Opin. Biotechnol.
, vol.14
, pp. 296-302
-
-
Radajewski, S.1
McDonald, I.R.2
Murrell, J.C.3
-
90
-
-
0038265142
-
Resolving functional diversity in relation to microbial community structure in soil: Exploiting genomics and stable isotope probing
-
Wellington, E. M. H., Berry, A. & Krsek, M. Resolving functional diversity in relation to microbial community structure in soil: exploiting genomics and stable isotope probing. Curr Opin. Microbiol. 6, 295-301 (2003).
-
(2003)
Curr. Opin. Microbiol.
, vol.6
, pp. 295-301
-
-
Wellington, E.M.H.1
Berry, A.2
Krsek, M.3
-
91
-
-
0033775337
-
Bacterial functional redundancy along a soil reclamation gradient
-
Yin, B., Crowley, D., Sparovek, G., De Melo, W. J. & Borneman, J. Bacterial functional redundancy along a soil reclamation gradient. Appl. Environ. Microbiol. 66, 4361-4365 (2000).
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 4361-4365
-
-
Yin, B.1
Crowley, D.2
Sparovek, G.3
De Melo, W.J.4
Borneman, J.5
-
92
-
-
4644275463
-
Integration of microbial ecology and statistics: A test to compare gene libraries
-
Schloss, P. D., Larget, B. R. & Handelsman, J. Integration of microbial ecology and statistics: a test to compare gene libraries. Appl. Environ. Microbiol. 70, 5485-5492 (2004).
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 5485-5492
-
-
Schloss, P.D.1
Larget, B.R.2
Handelsman, J.3
-
93
-
-
19144369096
-
Substrate-induced gene-expression screening of environmental metagenome libraries for isolation of catabolic genes
-
Uchiyama, T., Abe, T., Ikemura, T. & Watanabe, K. Substrate-induced gene-expression screening of environmental metagenome libraries for isolation of catabolic genes. Nature Biotechnol. 23, 88-93 (2005).
-
(2005)
Nature Biotechnol.
, vol.23
, pp. 88-93
-
-
Uchiyama, T.1
Abe, T.2
Ikemura, T.3
Watanabe, K.4
-
94
-
-
11144354360
-
Environmental shotgun sequencing of the Sargasso Sea
-
Venter, J. C. et al. Environmental shotgun sequencing of the Sargasso Sea. Science 304, 66-74 (2004).
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
|