-
1
-
-
0025183708
-
Basic local alignment search tool
-
DOI 10.1006/jmbi.1990.9999
-
Altschul SF, GishW, MillerW, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410 (Pubitemid 20364473)
-
(1990)
Journal of Molecular Biology
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
40549120596
-
The RAST Server: Rapid annotations using subsystems technology
-
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD et al. (2008) The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9: 75
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
Dejongh, M.4
Disz, T.5
Edwards, R.A.6
Formsma, K.7
Gerdes, S.8
Glass, E.M.9
Kubal, M.10
Meyer, F.11
Olsen, G.J.12
Olson, R.13
Osterman, A.L.14
Overbeek, R.A.15
McNeil, L.K.16
Paarmann, D.17
Paczian, T.18
Parrello, B.19
Pusch, G.D.20
more..
-
3
-
-
33744509927
-
Engineering life: Building a FAB for biology
-
Baker D, Church G, Collins J, Endy D, Jacobson J, Keasling J, Modrich P, Smolke C, Weiss R (2006) Engineering life: building a fab for biology. Sci Am 294: 44-51 (Pubitemid 43872851)
-
(2006)
Scientific American
, vol.294
, Issue.6
, pp. 44-51
-
-
Baker, D.1
Church, G.2
Collins, J.3
Endy, D.4
Jacobson, J.5
Keasling, J.6
Modrich, P.7
Smolke, C.8
Weiss, R.9
-
4
-
-
0034722959
-
Long-chain N-acyl amino acid antibiotics isolated from heterologously expressed environmental DNA [20]
-
DOI 10.1021/ja002990u
-
Brady SF, Clardy J (2000) Long-chain N-acyl amino acid antibiotics isolated from heterologously expressed environmental DNA. J Am Chem Soc 122: 12903-12904 (Pubitemid 32052235)
-
(2000)
Journal of the American Chemical Society
, vol.122
, Issue.51
, pp. 12903-12904
-
-
Brady, S.F.1
Clardy, J.2
-
5
-
-
19144366982
-
The metagenomics of soil
-
DOI 10.1038/nrmicro1160
-
Daniel R (2005) The metagenomics of soil. Nat Rev Microbiol 3: 470-478 (Pubitemid 40716173)
-
(2005)
Nature Reviews Microbiology
, vol.3
, Issue.6
, pp. 470-478
-
-
Daniel, R.1
-
6
-
-
23444440823
-
Inactivation of antibiotics and the dissemination of resistance genes
-
Davies J (1994) Inactivation of antibiotics and the dissemination of resistance genes. Science 264: 375-382 (Pubitemid 24178900)
-
(1994)
Science
, vol.264
, Issue.5157
, pp. 375-382
-
-
Davies, J.1
-
7
-
-
6044261460
-
Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation
-
Desai SK, Gallivan JP (2004) Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation. J Am Chem Soc 126: 13247-13254
-
(2004)
J Am Chem Soc
, vol.126
, pp. 13247-13254
-
-
Desai, S.K.1
Gallivan, J.P.2
-
9
-
-
40049092327
-
Land clearing and the biofuel carbon debt
-
DOI 10.1126/science.1152747
-
Fargione J, Hill J, Tilman D, Polasky S, Hawthorne P (2008) Land clearing and the biofuel carbon debt. Science 319: 1235-1238 (Pubitemid 351323017)
-
(2008)
Science
, vol.319
, Issue.5867
, pp. 1235-1238
-
-
Fargione, J.1
Hill, J.2
Tilman, D.3
Polasky, S.4
Hawthorne, P.5
-
10
-
-
31544462628
-
Ethanol can contribute to energy and environmental goals
-
DOI 10.1126/science.1121416
-
Farrell AE, Plevin RJ, Turner BT, Jones AD, O'Hare M, Kammen DM (2006) Ethanol can contribute to energy and environmental goals. Science 311: 506-508 (Pubitemid 43157725)
-
(2006)
Science
, vol.311
, Issue.5760
, pp. 506-508
-
-
Farrell, A.E.1
Plevin, R.J.2
Turner, B.T.3
Jones, A.D.4
O'Hare, M.5
Kammen, D.M.6
-
11
-
-
33751544539
-
Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale
-
DOI 10.1038/ng1906, PII NG1906
-
Herring CD, Raghunathan A, Honisch C, Patel T, Applebee MK, Joyce AR, Albert TJ, Blattner FR, van den Boom D, Cantor CR, Palsson BO (2006) Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale. Nat Genet 38: 1406-1412 (Pubitemid 44837562)
-
(2006)
Nature Genetics
, vol.38
, Issue.12
, pp. 1406-1412
-
-
Herring, C.D.1
Raghunathan, A.2
Honisch, C.3
Patel, T.4
Applebee, M.K.5
Joyce, A.R.6
Albert, T.J.7
Blattner, F.R.8
Van Den Boom, D.9
Cantor, C.R.10
Palsson, B.O.11
-
12
-
-
33846951759
-
Biomass recalcitrance: Engineering plants and enzymes for biofuels production
-
Himmel ME, Ding SY, Johnson DK, Adney WS, Nimlos MR, Brady JW, Foust TD (2007) Biomass recalcitrance: engineering plants and enzymes for biofuels production. Science 315: 804-807
-
(2007)
Science
, vol.315
, pp. 804-807
-
-
Himmel, M.E.1
Ding, S.Y.2
Johnson, D.K.3
Adney, W.S.4
Nimlos, M.R.5
Brady, J.W.6
Foust, T.D.7
-
13
-
-
29144502422
-
Improvement of xylose uptake and ethanol production in recombinant Saccharomyces cerevisiae through an inverse metabolic engineering approach
-
Jin YS, Alper H, Yang YT, Stephanopoulos G (2005) Improvement of xylose uptake and ethanol production in recombinant Saccharomyces cerevisiae through an inverse metabolic engineering approach. Appl Environ Microbiol 71: 8249-8256
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 8249-8256
-
-
Jin, Y.S.1
Alper, H.2
Yang, Y.T.3
Stephanopoulos, G.4
-
14
-
-
0023478845
-
Enzymatic 'combustion': The microbial degradation of lignin
-
Kirk TK, Farrell RL (1987) Enzymatic 'combustion': the microbial degradation of lignin. Annu Rev Microbiol 41: 465-505
-
(1987)
Annu Rev Microbiol
, vol.41
, pp. 465-505
-
-
Kirk, T.K.1
Farrell, R.L.2
-
15
-
-
12544249147
-
Inhibition of ethanolproducing yeast and bacteria by degradation products produced during pre-treatment of biomass
-
Klinke HB, Thomsen AB, Ahring BK (2004) Inhibition of ethanolproducing yeast and bacteria by degradation products produced during pre-treatment of biomass. Appl Microbiol Biotechnol 66: 10-26
-
(2004)
Appl Microbiol Biotechnol
, vol.66
, pp. 10-26
-
-
Klinke, H.B.1
Thomsen, A.B.2
Ahring, B.K.3
-
16
-
-
33750290903
-
Genomic adaptation of ethanologenic yeast to biomass conversion inhibitors
-
Liu ZL (2006) Genomic adaptation of ethanologenic yeast to biomass conversion inhibitors. Appl Microbiol Biotechnol 73: 27-36
-
(2006)
Appl Microbiol Biotechnol
, vol.73
, pp. 27-36
-
-
Liu, Z.L.1
-
17
-
-
0030861452
-
Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements
-
Lutz R, Bujard H (1997) Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements. Nucleic Acids Res 25: 1203-1210
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 1203-1210
-
-
Lutz, R.1
Bujard, H.2
-
18
-
-
0003796783
-
-
Neidhardt FC (Ed. in Chief), Curtiss III R, Ingraham JL, Lin ECC, Low KB, Magasanik B, Reznikoff WS, Riley M, Schaechter M, Umbarger HE (eds) American Society of Microbiology Press, Washington, USA
-
Neidhardt FC (Ed. in Chief), Curtiss III R, Ingraham JL, Lin ECC, Low KB, Magasanik B, Reznikoff WS, Riley M, Schaechter M, Umbarger HE (eds) (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology. American Society of Microbiology Press, Washington, USA
-
(1996)
Escherichia Coli and Salmonella: Cellular and Molecular Biology
-
-
-
19
-
-
4344587758
-
Uncultured soil bacteria are a reservoir of new antibiotic resistance genes
-
Riesenfeld CS, Goodman RM, Handelsman J (2004) Uncultured soil bacteria are a reservoir of new antibiotic resistance genes. Environ Microbiol 6: 981-989
-
(2004)
Environ Microbiol
, vol.6
, pp. 981-989
-
-
Riesenfeld, C.S.1
Goodman, R.M.2
Handelsman, J.3
-
20
-
-
33645870422
-
Production of the antimalarial drug precursor artemisinic acid in engineered yeast
-
Ro DK, Paradise EM, Ouellet M, Fisher KJ, Newman KL, Ndungu JM, Ho KA, Eachus RA, HamTS, Kirby J, ChangMC,Withers ST, Shiba Y, Sarpong R, Keasling JD (2006) Production of the antimalarial drug precursor artemisinic acid in engineered yeast. Nature 440: 940-943
-
(2006)
Nature
, vol.440
, pp. 940-943
-
-
Ro, D.K.1
Paradise, E.M.2
Ouellet, M.3
Fisher, K.J.4
Newman, K.L.5
Ndungu, J.M.6
Ho, K.A.7
Eachus, R.A.8
Ham, T.S.9
Kirby, J.10
Chang, M.C.11
Withers, S.T.12
Shiba, Y.13
Sarpong, R.14
Keasling, J.D.15
-
21
-
-
18844481269
-
Cloning the soil metagenome: A strategy for accessing the genetic and functional diversity of uncultured microorganisms
-
Rondon MR, August PR, Bettermann AD, Brady SF, Grossman TH, Liles MR, Loiacono KA, Lynch BA, MacNeil IA, Minor C, Tiong CL, Gilman M, Osburne MS, Clardy J, Handelsman J, Goodman RM (2000) Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms. Appl Environ Microbiol 66: 2541-2547
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 2541-2547
-
-
Rondon, M.R.1
August, P.R.2
Bettermann, A.D.3
Brady, S.F.4
Grossman, T.H.5
Liles, M.R.6
Loiacono, K.A.7
Lynch, B.A.8
MacNeil, I.A.9
Minor, C.10
Tiong, C.L.11
Gilman, M.12
Osburne, M.S.13
Clardy, J.14
Handelsman, J.15
Goodman, R.M.16
-
22
-
-
40049104506
-
Use of US croplands for biofuels increases greenhouse gases through emissions from land-use change
-
Searchinger T, Heimlich R, Houghton RA, Dong F, Elobeid A, Fabiosa J, Tokgoz S, Hayes D, Yu TH (2008) Use of US croplands for biofuels increases greenhouse gases through emissions from land-use change. Science 319: 1238-1240
-
(2008)
Science
, vol.319
, pp. 1238-1240
-
-
Searchinger, T.1
Heimlich, R.2
Houghton, R.A.3
Dong, F.4
Elobeid, A.5
Fabiosa, J.6
Tokgoz, S.7
Hayes, D.8
Yu, T.H.9
-
23
-
-
69549086653
-
Functional characterization of the antibiotic resistance reservoir in the human microflora
-
SommerMO, Dantas G, ChurchGM(2009) Functional characterization of the antibiotic resistance reservoir in the human microflora. Science 325: 1128-1131
-
(2009)
Science
, vol.325
, pp. 1128-1131
-
-
Sommer, M.O.1
Dantas, G.2
Church, G.M.3
-
24
-
-
33845407241
-
Carbon-negative biofuels from low-input high-diversity grassland biomass
-
Tilman D, Hill J, Lehman C (2006) Carbon-negative biofuels from low-input high-diversity grassland biomass. Science 314: 1598-1600
-
(2006)
Science
, vol.314
, pp. 1598-1600
-
-
Tilman, D.1
Hill, J.2
Lehman, C.3
-
25
-
-
0032219204
-
Novel techniques for analysingmicrobial diversity in natural and perturbed environments
-
Torsvik V, Daae FL, Sandaa RA, Ovreas L (1998) Novel techniques for analysingmicrobial diversity in natural and perturbed environments. J Biotechnol 64: 53-62
-
(1998)
J Biotechnol
, vol.64
, pp. 53-62
-
-
Torsvik, V.1
Daae, F.L.2
Sandaa, R.A.3
Ovreas, L.4
-
27
-
-
36549000721
-
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
-
Warnecke F, Luginbuhl P, Ivanova N, Ghassemian M, Richardson TH, Stege JT, Cayouette M, McHardy AC, Djordjevic G, Aboushadi N, Sorek R, Tringe SG, Podar M, Martin HG, Kunin V, Dalevi D, Madejska J, Kirton E, Platt D, Szeto E et al (2007) Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 450: 560-565
-
(2007)
Nature
, vol.450
, pp. 560-565
-
-
Warnecke, F.1
Luginbuhl, P.2
Lvanova, N.3
Ghassemian, M.4
Richardson, T.H.5
Stege, J.T.6
Cayouette, M.7
McHardy, A.C.8
Djordjevic, G.9
Aboushadi, N.10
Sorek, R.11
Tringe, S.G.12
Podar, M.13
Martin, H.G.14
Kunin, V.15
Dalevi, D.16
Madejska, J.17
Kirton, E.18
Platt, D.19
Szeto, E.20
more..
-
28
-
-
26844491940
-
Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor
-
Williamson LL, Borlee BR, Schloss PD, Guan C, Allen HK, Handelsman J (2005) Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor. Appl Environ Microbiol 71: 6335-6344
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 6335-6344
-
-
Williamson, L.L.1
Borlee, B.R.2
Schloss, P.D.3
Guan, C.4
Allen, H.K.5
Handelsman, J.6
-
29
-
-
0031923093
-
Isolation and characterization of ethanol-tolerant mutants of Escherichia coli KO11 for fuel ethanol production
-
Yomano LP, York SW, Ingram LO (1998) Isolation and characterization of ethanol-tolerant mutants of Escherichia coli KO11 for fuel ethanol production. J Ind Microbiol Biotechnol 20: 132-138
-
(1998)
J Ind Microbiol Biotechnol
, vol.20
, pp. 132-138
-
-
Yomano, L.P.1
York, S.W.2
Ingram, L.O.3
-
30
-
-
0033395572
-
Effect of organic acids on the growth and fermentation of ethanologenic Escherichia coli LY01
-
DOI 10.1002/(SICI)1097-0290(1999)66:4<203::AID-BIT1>3.0.CO;2-#
-
Zaldivar J, Ingram LO (1999) Effect of organic acids on the growth and fermentation of ethanologenic Escherichia coli LY01. Biotechnol Bioeng 66: 203-210 (Pubitemid 30016594)
-
(1999)
Biotechnology and Bioengineering
, vol.66
, Issue.4
, pp. 203-210
-
-
Zaldivar, J.1
Ingram, L.O.2
-
31
-
-
0033527357
-
Effect of selected aldehydes on the growth and fermentation of ethanologenic Escherichia coli
-
DOI 10.1002/(SICI)1097-0290(19991005)65:1<24::AID-BIT4>3.0.CO;2-2
-
Zaldivar J, Martinez A, Ingram LO (1999) Effect of selected aldehydes on the growth and fermentation of ethanologenic Escherichia coli. Biotechnol Bioeng 65: 24-33 (Pubitemid 29406768)
-
(1999)
Biotechnology and Bioengineering
, vol.65
, Issue.1
, pp. 24-33
-
-
Zaldivar, J.1
Martinez, A.2
Ingram, L.O.3
-
32
-
-
0034608443
-
Effect of alcohol compounds found in hemicellulose hydrolysate on the growth and fermentation of ethanologenic Escherichia coli
-
Zaldivar J, Martinez A, Ingram LO (2000) Effect of alcohol compounds found in hemicellulose hydrolysate on the growth and fermentation of ethanologenic Escherichia coli. Biotechnol Bioeng 68: 524-530
-
(2000)
Biotechnol Bioeng
, vol.68
, pp. 524-530
-
-
Zaldivar, J.1
Martinez, A.2
Ingram, L.O.3
|