메뉴 건너뛰기




Volumn 19, Issue 9, 2009, Pages 888-897

Lipase diversity in glacier soil based on analysis of metagenomic DNA fragments and cell culture

Author keywords

Gene diversity; Glacier soil; Lipase; Metagenomic library; Sequence based screening

Indexed keywords

DNA 16S; DNA FRAGMENT; GENOMIC DNA; RIBOSOME DNA; TRIACYLGLYCEROL LIPASE;

EID: 70849136832     PISSN: 10177825     EISSN: 17388872     Source Type: Journal    
DOI: 10.4014/jmb.0812.695     Document Type: Article
Times cited : (25)

References (38)
  • 1
    • 0036301647 scopus 로고    scopus 로고
    • The cold-active lipase of Pseudomonas fragi, heterologous expression, biochemical characterization and molecular modeling
    • Alquati, C., L. De Gioia, G. Santarossa, L. Alberghina, P. Fantucci, and M. Lotti. 2002. The cold-active lipase of Pseudomonas fragi, heterologous expression, biochemical characterization and molecular modeling. Eur. J. Biochem. 269: 3321-3328.
    • (2002) Eur. J. Biochem. , vol.269 , pp. 3321-3328
    • Alquati, C.1    De Gioia, L.2    Santarossa, G.3    Alberghina, L.4    Fantucci, P.5    Lotti, M.6
  • 3
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., W. Ludwig, and K. H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59: 143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 4
    • 0033214082 scopus 로고    scopus 로고
    • Bacterial lipolytic enzymes: Classification and properties
    • Arpigny, J. L. and K. E. Jaeger. 1999. Bacterial lipolytic enzymes: Classification and properties. Biochem. J. 343: 177-183.
    • (1999) Biochem. J. , vol.343 , pp. 177-183
    • Arpigny, J.L.1    Jaeger, K.E.2
  • 6
    • 34250220631 scopus 로고    scopus 로고
    • Construction of soil environmental DNA cosmid libraries and screening for clones that produce biologically active small molecules
    • Brady, S. F. 2007. Construction of soil environmental DNA cosmid libraries and screening for clones that produce biologically active small molecules. Nat. Protoc. 2: 1297-1305.
    • (2007) Nat. Protoc. , vol.2 , pp. 1297-1305
    • Brady, S.F.1
  • 7
    • 0031889267 scopus 로고    scopus 로고
    • A cold-adapted lipase of an Alaskan psychrotroph, Pseudomonas sp. strain B11-1: Gene cloning and enzyme purification and characterization
    • Choo, D. W., T. Kurihara, T. Suzuki, K. Soda, and N. Esaki. 1998. A cold-adapted lipase of an Alaskan psychrotroph, Pseudomonas sp. strain B11-1: Gene cloning and enzyme purification and characterization. Appl. Environ. Microbiol. 64: 486-491.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 486-491
    • Choo, D.W.1    Kurihara, T.2    Suzuki, T.3    Soda, K.4    Esaki, N.5
  • 9
    • 0025732362 scopus 로고
    • Nucleotide sequence of the lipase gene lip2 from the Antarctic psychrotroph Moraxella TA144 and site-specific mutagenesis of the conserved serine and histidine residues
    • Feller, G., M. Thiry, and C. Gerday. 1991. Nucleotide sequence of the lipase gene lip2 from the Antarctic psychrotroph Moraxella TA144 and site-specific mutagenesis of the conserved serine and histidine residues. DNA Cell Biol. 10: 381-388.
    • (1991) DNA Cell Biol. , vol.10 , pp. 381-388
    • Feller, G.1    Thiry, M.2    Gerday, C.3
  • 10
    • 4344598273 scopus 로고    scopus 로고
    • Quantifying the accessibility of the metagenome by random expression cloning techniques
    • Gabor, E. M., W. B. Alkema, and D. B. Janssen. 2004. Quantifying the accessibility of the metagenome by random expression cloning techniques. Environ. Microbiol. 6: 879-886.
    • (2004) Environ. Microbiol. , vol.6 , pp. 879-886
    • Gabor, E.M.1    Alkema, W.B.2    Janssen, D.B.3
  • 11
    • 0033976041 scopus 로고    scopus 로고
    • Isolation of lipase-secreting bacteria by deploying used frying oil as selective substrate
    • Haba, E., O. Bresco, C. Ferrer, A. Marques, M. Busquets, and A. Manresa. 2000. Isolation of lipase-secreting bacteria by deploying used frying oil as selective substrate. Enzyme Microb. Tech. 26: 40-44.
    • (2000) Enzyme Microb. Tech. , vol.26 , pp. 40-44
    • Haba, E.1    Bresco, O.2    Ferrer, C.3    Marques, A.4    Busquets, M.5    Manresa, A.6
  • 12
    • 33846247798 scopus 로고    scopus 로고
    • Metagenomic approach for the isolation of a novel low-temperature-active lipase from uncultured bacteria of marine sediment
    • Hardeman, F. and S. Sjoling. 2007. Metagenomic approach for the isolation of a novel low-temperature-active lipase from uncultured bacteria of marine sediment. FEMS Microbiol. Ecol. 59: 524-534.
    • (2007) FEMS Microbiol. Ecol. , vol.59 , pp. 524-534
    • Hardeman, F.1    Sjoling, S.2
  • 13
    • 33747518326 scopus 로고    scopus 로고
    • Industrial applications of microbial lipases
    • Hasan, F., A. A. Shah, and A. Hameed. 2006. Industrial applications of microbial lipases. Enzyme Microb. Tech. 39: 235-251.
    • (2006) Enzyme Microb. Tech. , vol.39 , pp. 235-251
    • Hasan, F.1    Shah, A.A.2    Hameed, A.3
  • 14
    • 0033916660 scopus 로고    scopus 로고
    • Screening of environmental DNA libraries for the presence of genes conferring lipolytic activity on Escherichia coli
    • Henne, A., R. A. Schmitz, M. Bomeke, G. Gottschalk, and R. Daniel. 2000. Screening of environmental DNA libraries for the presence of genes conferring lipolytic activity on Escherichia coli. Appl. Environ. Microbiol. 66: 3113-3116.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3113-3116
    • Henne, A.1    Schmitz, R.A.2    Bomeke, M.3    Gottschalk, G.4    Daniel, R.5
  • 16
    • 0029970177 scopus 로고    scopus 로고
    • Identifying microbial diversity in the natural environment: A molecular phylogenetic approach
    • DOI 10.1016/0167-7799(96)10025-1
    • Hugenholtz, P. and N. R. Pace. 1996. Identifying microbial diversity in the natural environment: A molecular phylogenetic approach. Trends Biotechnol. 14: 190-197. (Pubitemid 26167821)
    • (1996) Trends in Biotechnology , vol.14 , Issue.6 , pp. 190-197
    • Hugenholtz, P.1    Pace, N.R.2
  • 17
    • 0026216672 scopus 로고
    • Cloning, nucleotide sequencing, and expression in Escherichia coli of a lipase and its activator genes from Pseudomonas sp. KWI-56
    • Iizumi, T., K. Nakamura, Y. Shimada, A. Sugihara, Y. Tominaga, and T. Fukase. 1991. Cloning, nucleotide sequencing, and expression in Escherichia coli of a lipase and its activator genes from Pseudomonas sp. KWI-56. Agric. Biol. Chem. 55: 2349-2357.
    • (1991) Agric. Biol. Chem. , vol.55 , pp. 2349-2357
    • Iizumi, T.1    Nakamura, K.2    Shimada, Y.3    Sugihara, A.4    Tominaga, Y.5    Fukase, T.6
  • 18
    • 0032717591 scopus 로고    scopus 로고
    • Bacterial biocatalysts: Molecular biology, three-dimensional structures and biotechnological applications of lipases
    • Jaeger, K. E., B. W. Dijkstra, and M. T. Reetz. 1999. Bacterial biocatalysts: Molecular biology, three-dimensional structures and biotechnological applications of lipases. Annu. Rev. Microbiol. 53: 315-351
    • (1999) Annu. Rev. Microbiol. , vol.53 , pp. 315-351
    • Jaeger, K.E.1    Dijkstra, B.W.2    Reetz, M.T.3
  • 21
    • 0032167489 scopus 로고    scopus 로고
    • Microbial lipases form versatile tools for biotechnology
    • Jaeger, K. E. and M. T. Reetz. 1998. Microbial lipases form versatile tools for biotechnology. Trends Biotechnol. 16: 396-403.
    • (1998) Trends Biotechnol. , vol.16 , pp. 396-403
    • Jaeger, K.E.1    Reetz, M.T.2
  • 22
    • 2942596570 scopus 로고    scopus 로고
    • Sequence-based approach to finding functional lipases from microbial genome databases
    • Kim, H. K., Y. J. Jung, W. C. Choi, H. S. Ryu, T. K. Oh, and J. K. Lee. 2004. Sequence-based approach to finding functional lipases from microbial genome databases. FEMS Microbiol. Lett. 235: 349-355.
    • (2004) FEMS Microbiol. Lett. , vol.235 , pp. 349-355
    • Kim, H.K.1    Jung, Y.J.2    Choi, W.C.3    Ryu, H.S.4    Oh, T.K.5    Lee, J.K.6
  • 23
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. 5: 150-163.
    • (2004) Brief Bioinform. , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 24
    • 33845743463 scopus 로고    scopus 로고
    • Identification of novel enzymes with different hydrolytic activities by metagenome expression cloning
    • DOI 10.1016/j.jbiotec.2006.07.036, PII S0168165606006717
    • Lammle, K., H. Zipper, M. Breuer, B. Hauer, C. Buta, H. Brunner, and S. Rupp. 2007. Identification of novel enzymes with different hydrolytic activities by metagenome expression cloning. J. Biotechnol. 127: 575-592. (Pubitemid 44970498)
    • (2007) Journal of Biotechnology , vol.127 , Issue.4 , pp. 575-592
    • Lammle, K.1    Zipper, H.2    Breuer, M.3    Hauer, B.4    Buta, C.5    Brunner, H.6    Rupp, S.7
  • 25
    • 0027198857 scopus 로고
    • Gene organization and primary structure of human hormone sensitive lipase: Possible significance of a sequence homology with a lipase of Moraxella TA144, an Antarctic bacterium
    • Langin, D., H. Laurell, L. S. Holst, P. Belfrage, and C. Holm. 1993. Gene organization and primary structure of human hormone sensitive lipase: Possible significance of a sequence homology with a lipase of Moraxella TA144, an Antarctic bacterium. Proc. Natl. Acad. Sci. U.S.A. 90: 4897-4901.
    • (1993) Proc. Natl. Acad. Sci. U.S.A. , vol.90 , pp. 4897-4901
    • Langin, D.1    Laurell, H.2    Holst, L.S.3    Belfrage, P.4    Holm, C.5
  • 26
  • 27
    • 0028949381 scopus 로고
    • Thermal asymmetric interlaced PCR: Automatable amplification and sequencing of insert end fragments from P1 and YAC clones for chromosome walking
    • Liu, Y. G. and R. F. Whittier. 1995. Thermal asymmetric interlaced PCR: Automatable amplification and sequencing of insert end fragments from P1 and YAC clones for chromosome walking. Genomics 25: 674-681.
    • (1995) Genomics , vol.25 , pp. 674-681
    • Liu, Y.G.1    Whittier, R.F.2
  • 29
    • 34147185811 scopus 로고    scopus 로고
    • Rapid detection and isolation of known and putative α-L- arabinofuranosidase genes using degenerate PCR primers
    • Park, J. M., N. S. Han, and T. J. Kim. 2007. Rapid detection and isolation of known and putative α-L-arabinofuranosidase genes using degenerate PCR primers. J. Microbiol. Biotechnol. 17: 481-489.
    • (2007) J. Microbiol. Biotechnol. , vol.17 , pp. 481-489
    • Park, J.M.1    Han, N.S.2    Kim, T.J.3
  • 31
    • 33846861493 scopus 로고    scopus 로고
    • Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
    • Pel, H. J., J. H. Winde, D. B. Archer, P. S. Dyer, G. Hofmann, and P. J. Schaap. 2007. Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Nat. Biotechnol. 25: 221-231.
    • (2007) Nat. Biotechnol. , vol.25 , pp. 221-231
    • Pel, H.J.1    Winde, J.H.2    Archer, D.B.3    Dyer, P.S.4    Hofmann, G.5    Schaap, P.J.6
  • 32
    • 0036023485 scopus 로고    scopus 로고
    • Use of degenerate primers and touchdown PCR to amplify a halogenase gene fragment from Streptomyces venezuelae ISP5230
    • Piraee, M. and L. C. Vining. 2002. Use of degenerate primers and touchdown PCR to amplify a halogenase gene fragment from Streptomyces venezuelae ISP5230. J. Ind. Microbiol. Biotech. 29: 1-5.
    • (2002) J. Ind. Microbiol. Biotech. , vol.29 , pp. 1-5
    • Piraee, M.1    Vining, L.C.2
  • 34
    • 34250639490 scopus 로고    scopus 로고
    • Metagenomics, biotechnology with non-culturable microbes
    • Schmeisser, C., H. Steele, and W. R. Streit. 2007. Metagenomics, biotechnology with non-culturable microbes. Appl. Microbiol. Biotech. 75: 955-962.
    • (2007) Appl. Microbiol. Biotech. , vol.75 , pp. 955-962
    • Schmeisser, C.1    Steele, H.2    Streit, W.R.3
  • 37
    • 0018399632 scopus 로고
    • Glycogen, hyaluronate, and some other polysaccharides greatly enhance the formation of exolipase by Serratia marcescens
    • Winkler, U. K. and M. Stuckmann. 1979. Glycogen, hyaluronate, and some other polysaccharides greatly enhance the formation of exolipase by Serratia marcescens. J. Bacteriol. 138: 663-670.
    • (1979) J. Bacteriol. , vol.138 , pp. 663-670
    • Winkler, U.K.1    Stuckmann, M.2
  • 38
    • 0038315469 scopus 로고    scopus 로고
    • Flavobacterium xinjiangense sp. nov. and Flavobacterium omnivorum sp. nov., novel psychrophiles from the China No.1 glacier
    • Zhu, F., S. Wang, and P. Zhou. 2003. Flavobacterium xinjiangense sp. nov. and Flavobacterium omnivorum sp. nov., novel psychrophiles from the China No.1 glacier. Int. J. Syst. Evol. Microbiol. 53: 853-857.
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 853-857
    • Zhu, F.1    Wang, S.2    Zhou, P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.