메뉴 건너뛰기




Volumn 3, Issue , 2007, Pages

Programming gene expression with combinatorial promoters

Author keywords

Combinatorial promoter; Logic gate; Signal integration; Synthetic biology; Transcription regulation

Indexed keywords

ARTICLE; COMBINATORIAL LIBRARY; ESCHERICHIA COLI; GENE EXPRESSION; NONHUMAN; PRIORITY JOURNAL; REGULATOR GENE; BIOLOGICAL MODEL; GENE EXPRESSION REGULATION; GENE LIBRARY; GENETICS; PROMOTER REGION;

EID: 36249017917     PISSN: 17444292     EISSN: 17444292     Source Type: Journal    
DOI: 10.1038/msb4100187     Document Type: Article
Times cited : (290)

References (49)
  • 1
    • 0038241770 scopus 로고    scopus 로고
    • Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli
    • Atkinson MR, Savageau MA, Myers JT, Ninfa AJ (2003) Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli. Cell 113: 597-607
    • (2003) Cell , vol.113 , pp. 597-607
    • Atkinson, M.R.1    Savageau, M.A.2    Myers, J.T.3    Ninfa, A.J.4
  • 2
    • 35548990232 scopus 로고    scopus 로고
    • A synthetic phage lambda regulatory circuit
    • Atsumi S, Little JW (2006) A synthetic phage lambda regulatory circuit. Proc Natl Acad Sci USA 103: 19045-19050
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 19045-19050
    • Atsumi, S.1    Little, J.W.2
  • 3
    • 17844374314 scopus 로고    scopus 로고
    • A synthetic multicellular system for programmed pattern formation
    • Basu S, Gerchman Y, Collins CH, Arnold FH, Weiss R (2005) A synthetic multicellular system for programmed pattern formation. Nature 434: 1130-1134
    • (2005) Nature , vol.434 , pp. 1130-1134
    • Basu, S.1    Gerchman, Y.2    Collins, C.H.3    Arnold, F.H.4    Weiss, R.5
  • 4
  • 5
    • 0020307662 scopus 로고
    • A multifunctional gene (tetR) controls Tn10-encoded tetracycline resistance
    • Beck CF, Mutzel R, Barbe J, Muller W (1982) A multifunctional gene (tetR) controls Tn10-encoded tetracycline resistance. J Bacteriol 150: 633-642
    • (1982) J Bacteriol , vol.150 , pp. 633-642
    • Beck, C.F.1    Mutzel, R.2    Barbe, J.3    Muller, W.4
  • 6
    • 19444387811 scopus 로고    scopus 로고
    • Bacterial repression loops require enhanced DNA flexibility
    • Becker NA, Kahn JD, Maher III LJ (2005) Bacterial repression loops require enhanced DNA flexibility. J Mol Biol 349: 716-730
    • (2005) J Mol Biol , vol.349 , pp. 716-730
    • Becker, N.A.1    Kahn, J.D.2    Maher III, L.J.3
  • 9
    • 0041530033 scopus 로고    scopus 로고
    • Genomic profiling of iron-responsive genes in Salmonella enterica serovar Typhimurium by high-throughput screening of a random promoter library
    • Bjarnason J, Southward CM, Surette MG (2003) Genomic profiling of iron-responsive genes in Salmonella enterica serovar Typhimurium by high-throughput screening of a random promoter library. J Bacteriol 185: 4973-4982
    • (2003) J Bacteriol , vol.185 , pp. 4973-4982
    • Bjarnason, J.1    Southward, C.M.2    Surette, M.G.3
  • 10
    • 1842591130 scopus 로고    scopus 로고
    • The regulation of bacterial transcription initiation
    • Browning DF, Busby SJ (2004) The regulation of bacterial transcription initiation. Nat Rev Microbiol 2: 57-65
    • (2004) Nat Rev Microbiol , vol.2 , pp. 57-65
    • Browning, D.F.1    Busby, S.J.2
  • 11
    • 0037965981 scopus 로고    scopus 로고
    • On schemes of combinatorial transcription logic
    • Buchler N, Gerland U, Hwa T (2003) On schemes of combinatorial transcription logic. Proc Natl Acad Sci USA 100: 5136-5141
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 5136-5141
    • Buchler, N.1    Gerland, U.2    Hwa, T.3
  • 12
    • 0028061282 scopus 로고
    • Promoter structure, promoter recognition, and transcription activation in prokaryotes
    • Busby S, Ebright RH (1994) Promoter structure, promoter recognition, and transcription activation in prokaryotes. Cell 79: 743-746
    • (1994) Cell , vol.79 , pp. 743-746
    • Busby, S.1    Ebright, R.H.2
  • 13
    • 0024847691 scopus 로고
    • Recognition of nucleotide sequences at the Escherichia coli galactose operon P1 promoter by RNA polymerase
    • Chan B, Busby S (1989) Recognition of nucleotide sequences at the Escherichia coli galactose operon P1 promoter by RNA polymerase. Gene 84: 227-236
    • (1989) Gene , vol.84 , pp. 227-236
    • Chan, B.1    Busby, S.2
  • 14
    • 0026003072 scopus 로고
    • Control site location and transcriptional regulation in Escherichia coli
    • Collado-Vides J, Magasanik B, Gralla JD (1991) Control site location and transcriptional regulation in Escherichia coli. Microbiol Mol Biol Rev 55: 371-394
    • (1991) Microbiol Mol Biol Rev , vol.55 , pp. 371-394
    • Collado-Vides, J.1    Magasanik, B.2    Gralla, J.D.3
  • 15
    • 0033032594 scopus 로고    scopus 로고
    • Quorum sensing in Vibrio fischeri: Elements of the luxl promoter
    • Egland KA, Greenberg EP (1999) Quorum sensing in Vibrio fischeri: elements of the luxl promoter. Mol Microbiol 31: 1197-1204
    • (1999) Mol Microbiol , vol.31 , pp. 1197-1204
    • Egland, K.A.1    Greenberg, E.P.2
  • 16
    • 0024616602 scopus 로고
    • Position and density effects on repression by stationary and mobile DNA-binding proteins
    • Elledge SJ, Davis RW(1989) Position and density effects on repression by stationary and mobile DNA-binding proteins. Genes Dev 3: 185-197
    • (1989) Genes Dev , vol.3 , pp. 185-197
    • Elledge, S.J.1    Davis, R.W.2
  • 17
    • 28544451327 scopus 로고    scopus 로고
    • Foundations for engineering biology
    • Endy D (2005) Foundations for engineering biology. Nature 438: 449-453
    • (2005) Nature , vol.438 , pp. 449-453
    • Endy, D.1
  • 18
    • 0027957161 scopus 로고
    • Quorum sensing in bacteria: The LuxR-LuxI family of cell density-responsive transcriptional regulators
    • Fuqua WC, Winans SC, Greenberg EP (1994) Quorum sensing in bacteria: the LuxR-LuxI family of cell density-responsive transcriptional regulators. J Bacteriol 176: 269-275
    • (1994) J Bacteriol , vol.176 , pp. 269-275
    • Fuqua, W.C.1    Winans, S.C.2    Greenberg, E.P.3
  • 19
    • 85170200554 scopus 로고    scopus 로고
    • Gralla JD, Collado-Vides J (1996) Organization and function of transcription regulatory elements. In Escherichia coli and Salmonella: Cellular and Molecular Biology, Neidhardt FC, Curtiss R (eds), 2nd edn, pp 2 v. (xx, 2822 pp)Washington, DC: ASM Press
    • Gralla JD, Collado-Vides J (1996) Organization and function of transcription regulatory elements. In Escherichia coli and Salmonella: Cellular and Molecular Biology, Neidhardt FC, Curtiss R (eds), 2nd edn, pp 2 v. (xx, 2822 pp)Washington, DC: ASM Press
  • 23
    • 33744981130 scopus 로고    scopus 로고
    • rRNA promoter regulation by nonoptimal binding of sigma region 1.2: An additional recognition element for RNA polymerase
    • Haugen SP, Berkmen MB, Ross W, Gaal T, Ward C, Gourse RL (2006) rRNA promoter regulation by nonoptimal binding of sigma region 1.2: an additional recognition element for RNA polymerase. Cell 125: 1069-1082
    • (2006) Cell , vol.125 , pp. 1069-1082
    • Haugen, S.P.1    Berkmen, M.B.2    Ross, W.3    Gaal, T.4    Ward, C.5    Gourse, R.L.6
  • 24
    • 0021111879 scopus 로고
    • Compilation and analysis of Escherichia coli promoter DNA sequences
    • Hawley DK, McClure WR (1983) Compilation and analysis of Escherichia coli promoter DNA sequences. Nucleic Acids Res 11: 2237-2255
    • (1983) Nucleic Acids Res , vol.11 , pp. 2237-2255
    • Hawley, D.K.1    McClure, W.R.2
  • 25
    • 33846002036 scopus 로고    scopus 로고
    • Transcriptional regulation by competing transcription factor modules
    • Hermsen R, Tans S, Wolde PR (2006) Transcriptional regulation by competing transcription factor modules. PLoS Comput Biol 2: e164
    • (2006) PLoS Comput Biol , vol.2
    • Hermsen, R.1    Tans, S.2    Wolde, P.R.3
  • 26
    • 54249116230 scopus 로고
    • Genetic regulatory mechanisms in the synthesis of proteins
    • Jacob F, Monod J (1961) Genetic regulatory mechanisms in the synthesis of proteins. J Mol Biol 3: 318-356
    • (1961) J Mol Biol , vol.3 , pp. 318-356
    • Jacob, F.1    Monod, J.2
  • 27
    • 0028051844 scopus 로고
    • Synergistic activation of transcription by bacteriophage lambda cI protein and E. coli cAMP receptor protein
    • Joung JK, Koepp DM, Hochschild A (1994) Synergistic activation of transcription by bacteriophage lambda cI protein and E. coli cAMP receptor protein. Science 265: 1863-1866
    • (1994) Science , vol.265 , pp. 1863-1866
    • Joung, J.K.1    Koepp, D.M.2    Hochschild, A.3
  • 28
    • 0022820998 scopus 로고
    • Functional dissection of Escherichia coli promoters: Information in the transcribed region is involved in late steps of the overall process
    • Kammerer W, Deuschle U, Gentz R, Bujard H (1986) Functional dissection of Escherichia coli promoters: information in the transcribed region is involved in late steps of the overall process. EMBO J 5: 2995-3000
    • (1986) EMBO J , vol.5 , pp. 2995-3000
    • Kammerer, W.1    Deuschle, U.2    Gentz, R.3    Bujard, H.4
  • 29
    • 0014671878 scopus 로고
    • Homeostasis and differentiation in random genetic control networks
    • Kauffman S (1969) Homeostasis and differentiation in random genetic control networks. Nature 224: 177-178
    • (1969) Nature , vol.224 , pp. 177-178
    • Kauffman, S.1
  • 30
    • 0345077411 scopus 로고
    • Promoters largely determine the efficiency of repressor action
    • Lanzer M, Bujard H (1988) Promoters largely determine the efficiency of repressor action. Proc Natl Acad Sci USA 85: 8973-8977
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 8973-8977
    • Lanzer, M.1    Bujard, H.2
  • 31
    • 33646203559 scopus 로고    scopus 로고
    • Gene expression from random libraries of yeast promoters
    • Ligr M, Siddharthan R, Cross FR, Siggia ED (2006) Gene expression from random libraries of yeast promoters. Genetics 172: 2113-2122
    • (2006) Genetics , vol.172 , pp. 2113-2122
    • Ligr, M.1    Siddharthan, R.2    Cross, F.R.3    Siggia, E.D.4
  • 32
    • 0030861452 scopus 로고    scopus 로고
    • Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements
    • Lutz R, Bujard H (1997) Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements. Nucleic Acids Res 25: 1203-1210
    • (1997) Nucleic Acids Res , vol.25 , pp. 1203-1210
    • Lutz, R.1    Bujard, H.2
  • 33
    • 0142027814 scopus 로고    scopus 로고
    • Structure and function of the feed-forward loop network motif
    • Mangan S, Alon U (2003) Structure and function of the feed-forward loop network motif. Proc Natl Acad Sci USA 100: 11980-11985
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 11980-11985
    • Mangan, S.1    Alon, U.2
  • 35
    • 0028365289 scopus 로고
    • Quality and position of the three lac operators of E. coli define efficiency of repression
    • Oehler S, Amouyal M, Kolkhof P, von Wilcken-Bergmann B, Muller-Hill B (1994) Quality and position of the three lac operators of E. coli define efficiency of repression. EMBO J 13: 3348-3355
    • (1994) EMBO J , vol.13 , pp. 3348-3355
    • Oehler, S.1    Amouyal, M.2    Kolkhof, P.3    von Wilcken-Bergmann, B.4    Muller-Hill, B.5
  • 36
    • 0007188544 scopus 로고
    • The Escherichia coli L-arabinose operon: Binding sites of the regulatory proteins and a mechanism of positive and negative regulation
    • Ogden S, Haggerty D, Stoner CM, Kolodrubetz D, Schleif R (1980) The Escherichia coli L-arabinose operon: binding sites of the regulatory proteins and a mechanism of positive and negative regulation. Proc Natl Acad Sci USA 77: 3346-3350
    • (1980) Proc Natl Acad Sci USA , vol.77 , pp. 3346-3350
    • Ogden, S.1    Haggerty, D.2    Stoner, C.M.3    Kolodrubetz, D.4    Schleif, R.5
  • 37
    • 4444293086 scopus 로고    scopus 로고
    • 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
    • Ptashne M (2004) A Genetic Switch: Phage Lambda Revisited, 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
    • (2004) A Genetic Switch: Phage Lambda Revisited
    • Ptashne, M.1
  • 38
    • 20444382737 scopus 로고    scopus 로고
    • Regulation of transcription: From lambda to eukaryotes
    • Ptashne M (2005) Regulation of transcription: from lambda to eukaryotes. Trends Biochem Sci 30: 275-279
    • (2005) Trends Biochem Sci , vol.30 , pp. 275-279
    • Ptashne, M.1
  • 41
  • 42
    • 85170278851 scopus 로고    scopus 로고
    • Salgado H, Gama-Castro S, Peralta-Gil M, Diaz-Peredo E, Sanchez-Solano F, Santos-Zavaleta A, Martinez-Flores I, Jimenez-Jacinto V, Bonavides-Martinez C, Segura-Salazar J, Martinez-Antonio A, Collado-Vides J (2006) RegulonDB version 5.0, Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions. Nucleic Acids Res 34: D394-D397
    • Salgado H, Gama-Castro S, Peralta-Gil M, Diaz-Peredo E, Sanchez-Solano F, Santos-Zavaleta A, Martinez-Flores I, Jimenez-Jacinto V, Bonavides-Martinez C, Segura-Salazar J, Martinez-Antonio A, Collado-Vides J (2006) RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions. Nucleic Acids Res 34: D394-D397
  • 43
    • 0037337551 scopus 로고    scopus 로고
    • AraC protein: A love-hate relationship
    • Schleif R (2003) AraC protein: a love-hate relationship. BioEssays 25: 274-282
    • (2003) BioEssays , vol.25 , pp. 274-282
    • Schleif, R.1
  • 45
    • 0028555357 scopus 로고
    • Use of the tetracycline promoter for the tightly regulated production of a murine antibody fragment in Escherichia coli
    • Skerra A (1994) Use of the tetracycline promoter for the tightly regulated production of a murine antibody fragment in Escherichia coli. Gene 151: 131-135
    • (1994) Gene , vol.151 , pp. 131-135
    • Skerra, A.1
  • 46
    • 28544440364 scopus 로고    scopus 로고
    • Reconstruction of genetic circuits
    • Sprinzak D, Elowitz MB (2005) Reconstruction of genetic circuits. Nature 438: 443-448
    • (2005) Nature , vol.438 , pp. 443-448
    • Sprinzak, D.1    Elowitz, M.B.2
  • 48
    • 0042622638 scopus 로고    scopus 로고
    • DNA looping and physical constraints on transcription regulation
    • Vilar JM, Leibler S (2003) DNA looping and physical constraints on transcription regulation. J Mol Biol 331: 981-989
    • (2003) J Mol Biol , vol.331 , pp. 981-989
    • Vilar, J.M.1    Leibler, S.2
  • 49
    • 0014779269 scopus 로고
    • Mechanism of activation of catabolite-sensitive genes: A positive control system
    • Zubay G, Schwartz D, Beckwith J (1970) Mechanism of activation of catabolite-sensitive genes: a positive control system. Proc Natl Acad Sci USA 66: 104-110
    • (1970) Proc Natl Acad Sci USA , vol.66 , pp. 104-110
    • Zubay, G.1    Schwartz, D.2    Beckwith, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.