Characterization of a novel β-glucosidase-like activity from a soil metagenome

Journal of Microbiology

Volumn 47, Issue 5, 2009, Pages 542-548

  Jiang, Chengjian ^a   Ma, Gefei ^a   Li, Shuangxi ^a   Hu, Tingting ^a   Che, Zhiqun ^a   Shen, Peihong ^a   Yan, Bing ^b   Wu, Bo ^a  

^a Guangxi Key Laboratory of Subtropical Bioresources Conservation and Utilization   (Taiwan)

^b Guangxi Key Laboratory for Marine Biotechnology   (Taiwan)

Author keywords

glucosidase; Function based screening strategy; Uncultured soil microorganisms

Indexed keywords

BETA GLUCOSIDASE;

ARTICLE; CHEMISTRY; DNA SEQUENCE; ENZYME SPECIFICITY; ENZYME STABILITY; ESCHERICHIA COLI; GENE EXPRESSION; GENETICS; ISOLATION AND PURIFICATION; KINETICS; METABOLISM; METAGENOME; METAGENOMICS; METHODOLOGY; MICROBIOLOGY; MOLECULAR CLONING; MOLECULAR GENETICS; MOLECULAR WEIGHT; OPEN READING FRAME; PH; SEQUENCE HOMOLOGY; TEMPERATURE;

BETA-GLUCOSIDASE; CLONING, MOLECULAR; ENZYME STABILITY; ESCHERICHIA COLI; GENE EXPRESSION; HYDROGEN-ION CONCENTRATION; KINETICS; METAGENOME; METAGENOMICS; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; OPEN READING FRAMES; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; SOIL MICROBIOLOGY; SUBSTRATE SPECIFICITY; TEMPERATURE;

ESCHERICHIA COLI;

EID: 71049146248     PISSN: 12258873     EISSN: 12258873     Source Type: Journal    
DOI: 10.1007/s12275-009-0024-y     Document Type: Article

References (32)

1. Bhatia, Y., S. Mishra, and V.S. Bisaria. 2002. Microbial β-glucosidases: Cloning, properties, and applications. Crit. Rev. Biotechnol. 22, 375-407.
2. Chatzinotas, A., R.A. Sandaa, W. Schönhuber, R. Amann, F.L. Daae, V. Torsvik, J. Zeyer, and D. Hahn. 1998. Analysis of broad-scale differences in microbial community composition of two pristine forest soils. Syst. Appl. Microbiol. 21, 579-587.
3. Chir, J., S. Withers, C.F. Wan, and Y.K. Li. 2002. Identification of the two essential groups in the family 3 β-glucosidase from Flavobacterium meningosepticum by labelling and tandem mass spectrometric analysis. Biochem. J. 365, 857-863.
4. Dubey, S.K., A.K. Tripathi, and S.N. Upadhyay. 2006. Exploration of soil bacterial communities for their potential as bioresource. Bioresour. Technol. 97, 2217-2224.
5. Eberhart, B., D.F. Cross, and L.R. Chase. 1964. β-Glucosidase system of Neurospora crassa I. β-Glucosidase and cellulase activities of mutant and wild-type strains. J. Bacteriol. 87, 761-770.
6. Feng, Y., C.J. Duan, H. Pang, X.C. Mo, C.F. Wu, Y. Yu, Y.L. Hu, J. Wei, J.L. Tang, and J.X. Feng. 2007. Cloning and identification of novel cellulase genes from uncultured microorganisms in rabbit cecum and characterization of the expressed cellulases. Appl. Microbiol. Biotechnol. 75, 319-328.
7. Ferrer, M., O.V. Golyshina, T.N. Chernikova, A.N. Khachane, D. Reyes-Duarte, V.A. Santos, C. Strompl, K. Elborough, G. Jarvis, A. Neef, M.M. Yakimov, K.N. Timmis, and P.N. Golyshin. 2005. Novel hydrolase diversity retrieved from a metagenome library of bovine rumen microflora. Environ. Microbiol. 7, 1996-2010.
8. Fierer, N., M. Breitbart, J. Nulton, P. Salamon, C. Lozupone, R. Jones, M. Robeson, R.A. Edwards, B. Felts, S. Rayhawk, R. Knight, F. Rohwer, and R.B. Jackson. 2007. Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil. Appl. Environ. Microbiol. 73, 7059-7066.
9. Handelsman, J. 2004. Metagenomics: Application of genomics to uncultured microorganisms. Microbiol. Mol. Biol Rev. 68, 669-685.
10. Hashimoto, W., H. Miki, H. Nankai, N. Sato, S. Kawai, and K. Murata. 1998. Molecular cloning of two genes for β-d-glucosidase in Bacillus sp. GL1 and identification of one as a gellandegrading enzyme. Arch. Biochem. Biophys. 360, 1-9.
11. Healy, F.G., R.M. Ray, H.C. Aldrich, A.C. Wilkie, L.O. Ingram, and K.T. Shanmugam. 1995. Direct isolation of functional genes encoding cellulases from the microbial consortia in a thermophilic, anaerobic digester maintained on lignocellulose. Appl. Microbiol. Biotechnol. 43, 667-674.
12. Jiang, C. and B. Wu. 2007. Molecular cloning and functional characterization of a novel decarboxylase from uncultured microorganisms. Biochem. Biophys. Res. Commun. 357, 421-426.
13. Joo, A.R., M. Jeya, K.M. Lee, W.I. Sim, J.S. Kim, I.W. Kim, Y.S. Kim, D.K. Oh, P. Gunasekaran, and J.K. Lee. 2009. Purification and characterization of a β-1,4-glucosidase from a newly isolated strain of Fomitopsis pinicola. Appl. Microbiol. Biotechnol. 83, 285-294.
14. Karnchanatat, A., A. Petsom, P. Sangvanich, J. Piaphukiew, A.J. Whalley, C.D. Reynolds, and P. Sihanonth. 2007. Purification and biochemical characterization of an extracellular β-glucosidase from the wood-decaying fungus Daldinia eschscholzii (Ehrenb.: Fr.) Rehm. FEMS Microbiol. Lett. 270, 162-170.
15. Kim, S.J., C.M. Lee, M.Y. Kim, Y.S. Yeo, S.H. Yoon, H.C. Kang, and B.S. Koo. 2007. Screening and characterization of an enzyme with β-glucosidase activity from environmental DNA. J. Microbiol. Biotechnol. 17, 905-912.
16. Kowalchuk, G.A., A.G. Speksnijder, K. Zhang, R.M. Goodman, and J.A. van Veen. 2007. Finding the needles in the metagenome haystack. Microb. Ecol. 53, 475-485.
17. Laemmli, U.K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685.
18. Magalhaes, P.O., A. Ferraz, and A.F. Milagres. 2006. Enzymatic properties of two β-glucosidases from Ceriporiopsis subvermispora produced in biopulping conditions. J. Appl. Microbiol. 101, 480-486.
19. Morris, R.M. 2006. Environmental genomics: Exploring ecological sequence space. Curr. Biol. 16, R499-501.
20. Murray, P., N. Aro, C. Collins, A. Grassick, M. Penttilä, M. Saloheimo, and M. Tuohy. 2004. Expression in Trichoderma reesei and characterisation of a thermostable family 3 β-glucosidase from the moderately thermophilic fungus Talaromyces emersonii. Protein Expr. Purif. 38, 248-257.
21. Nam, K.H., S.J. Kim, M.Y. Kim, J.H. Kim, Y.S. Yeo, C.M. Lee, H.K. Jun, and K.Y. Hwang. 2008. Crystal structure of engineered β-glucosidase from a soil metagenome. Proteins 73, 788-793.
22. Odoux, E., J. Escoute, L. Verdeil, and J.M. Brillouet. 2003. Localization of β-d-glucosidase activity and glucovanillin in vanilla bean (vanilla planifolia andrews). Ann. Bot. 92, 437-444.
23. Rashid, M.H. and K.S. Siddqui. 1997. Purification and characterization of a β-glucosidase from Aspergillus niger. Folia. Microbiol. 42, 544-550.
24. Roy, P., S. Mishra, and T.K. Chaudhuri. 2005. Cloning, sequence analysis, and characterization of a novel β-glucosidase-like activity from Pichia etchellsii. Biochem. Biophys. Res. Commun. 336, 299-308.
25. Sambrook, J. and D.W. Russell. 2001. Molecular Cloning: A Laboratory Manual, 3rd ed, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, N.Y., USA.
26. Sessitsch, A., E. Hackl, P. Wenzl, A. Kilian, T. Kostic, N. Stralis-Pavese, B.T. Sandjong, and L. Bodrossy. 2006. Diagnostic microbial microarrays in soil ecology. New Phytol. 171, 719-735.
27. Stanislawski, J. 1991. Enzyme Kinetics, version 1.5. Trinity Software, Fort Pierce, Fla, USA.
28. Torsvik, V., J. Goksøyr, and F.L. Daae. 1990. High diversity in DNA of soil bacteria. Appl. Environ. Microbiol. 56, 782-787.
29. Valaskova, V. and P. Baldrian. 2006. Degradation of cellulose and hemi-celluloses by the brown rot fungus Piptoporus betulinus-production of extracellular enzymes and characterization of the major cellulases. Microbiology 152, 3613-3622.
30. Voget, S., H.L. Steele, and W.R. Streit. 2006. Characterization of a metagenome-derived halotolerant cellulase. J. Biotechnol. 126, 26-36.
31. Walter, J., M. Mangold, and G.W. Tannock. 2005. Construction, analysis, and β-glucanase screening of a bacterial artificial chromosome library from the large-bowel microbiota of mice. Appl. Environ. Microbiol. 71, 2347-2354.
32. Xu, J. 2006. Microbial ecology in the age of genomics and metagenomics: Concepts, tools, and recent advances. Mol. Ecol. 15, 1713-1731.