-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
2
-
-
0035140586
-
gfp-based N-acyl homoserine-lactone sensor systems for detection of bacterial communication
-
Andersen JB, et al. 2001. gfp-based N-acyl homoserine-lactone sensor systems for detection of bacterial communication. Appl. Environ. Microbiol. 67:575-585.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 575-585
-
-
Andersen, J.B.1
-
4
-
-
0033910753
-
Arrangement and regulation of the genes for meta-pathway enzymes required for degradation of phenol in Comamonas testosteroni TA441
-
Arai H, Ohishi T, Chang MY, Kudo T. 2000. Arrangement and regulation of the genes for meta-pathway enzymes required for degradation of phenol in Comamonas testosteroni TA441. Microbiology 146:1707-1715.
-
(2000)
Microbiology
, vol.146
, pp. 1707-1715
-
-
Arai, H.1
Ohishi, T.2
Chang, M.Y.3
Kudo, T.4
-
5
-
-
0028228175
-
Multiple signalling systems controlling expression of luminescence in Vibrio harveyi: sequence and function of genes encoding a second sensory pathway
-
Bassler BL, Wright M, Silverman MR. 1994. Multiple signalling systems controlling expression of luminescence in Vibrio harveyi: sequence and function of genes encoding a second sensory pathway. Mol. Microbiol. 13:273-286.
-
(1994)
Mol. Microbiol.
, vol.13
, pp. 273-286
-
-
Bassler, B.L.1
Wright, M.2
Silverman, M.R.3
-
6
-
-
69949188280
-
Cell-cell signalling in bacteria: not simply a matter of quorum
-
Boyer M, Wisniewski-Dyé F. 2009. Cell-cell signalling in bacteria: not simply a matter of quorum. FEMS Microbiol. Ecol. 70:1-19.
-
(2009)
FEMS Microbiol. Ecol.
, vol.70
, pp. 1-19
-
-
Boyer, M.1
Wisniewski-Dyé, F.2
-
7
-
-
0028849833
-
Synthesis of multiple exoproducts in Pseudomonas aeruginosa is under the control of RhlR-RhlI, another set of regulators in strain PAO1 with homology to the autoinducer-responsive LuxR-LuxI family
-
Brint JM, Ohman DE. 1995. Synthesis of multiple exoproducts in Pseudomonas aeruginosa is under the control of RhlR-RhlI, another set of regulators in strain PAO1 with homology to the autoinducer-responsive LuxR-LuxI family. J. Bacteriol. 177:7155-7163.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 7155-7163
-
-
Brint, J.M.1
Ohman, D.E.2
-
8
-
-
33645056466
-
Identification of the central quorum sensing regulator of virulence in the enteric phytopathogen Erwinia carotovora: the VirR repressor
-
Burr T, et al. 2006. Identification of the central quorum sensing regulator of virulence in the enteric phytopathogen, Erwinia carotovora: the VirR repressor. Mol. Microbiol. 59:113-125.
-
(2006)
Mol. Microbiol.
, vol.59
, pp. 113-125
-
-
Burr, T.1
-
9
-
-
23744473854
-
Identification of acyl-homoserine lactone signal molecules produced by Nitrosomonas europaea strain Schmidt
-
Burton EO, Read HW, Pellitteri MC, Hickey WJ. 2005. Identification of acyl-homoserine lactone signal molecules produced by Nitrosomonas europaea strain Schmidt. Appl. Environ. Microbiol. 71:4906-4909.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 4906-4909
-
-
Burton, E.O.1
Read, H.W.2
Pellitteri, M.C.3
Hickey, W.J.4
-
10
-
-
84865564101
-
The presence and role of bacterial quorum sensing in activated sludge
-
Chong G, Kimyon O, Rice SA, Kjelleberg S, Manefield M. 2012. The presence and role of bacterial quorum sensing in activated sludge. Microb. Biotechnol. 5:621-633.
-
(2012)
Microb. Biotechnol.
, vol.5
, pp. 621-633
-
-
Chong, G.1
Kimyon, O.2
Rice, S.A.3
Kjelleberg, S.4
Manefield, M.5
-
11
-
-
27444444320
-
Diversity of N-acyl homoserine lactone-producing and-degrading bacteria in soil and tobacco rhizosphere
-
D'Angelo-Picard C, Faure D, Penot I, Dessaux Y. 2005. Diversity of N-acyl homoserine lactone-producing and-degrading bacteria in soil and tobacco rhizosphere. Environ. Microbiol. 7:1796-1808.
-
(2005)
Environ. Microbiol.
, vol.7
, pp. 1796-1808
-
-
D'Angelo-Picard, C.1
Faure, D.2
Penot, I.3
Dessaux, Y.4
-
12
-
-
75349107399
-
Quorum sensing in natural environments: emerging views from microbial mats
-
Decho AW, Norman RS, Visscher PT. 2010. Quorum sensing in natural environments: emerging views from microbial mats. Trends Microbiol. 18:73-80.
-
(2010)
Trends Microbiol
, vol.18
, pp. 73-80
-
-
Decho, A.W.1
Norman, R.S.2
Visscher, P.T.3
-
13
-
-
33845277945
-
Nucleotide sequence of the luxR and luxI genes and structure of the primary regulatory region of the lux regulon of Vibrio fischeri ATCC 7744
-
Devine JH, Countryman C, Baldwin TO. 1988. Nucleotide sequence of the luxR and luxI genes and structure of the primary regulatory region of the lux regulon of Vibrio fischeri ATCC 7744. Biochemistry 27:837-842.
-
(1988)
Biochemistry
, vol.27
, pp. 837-842
-
-
Devine, J.H.1
Countryman, C.2
Baldwin, T.O.3
-
14
-
-
0030967905
-
A homoserine lactone autoinducer regulates virulence of an insect-pathogenic bacterium Xenorhabdus nematophilus (Enterobacteriaceae)
-
Dunphy G, Miyamoto C, Meighen E. 1997. A homoserine lactone autoinducer regulates virulence of an insect-pathogenic bacterium, Xenorhabdus nematophilus (Enterobacteriaceae). J. Bacteriol. 179:5288-5291.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 5288-5291
-
-
Dunphy, G.1
Miyamoto, C.2
Meighen, E.3
-
15
-
-
79960386267
-
Mining quorum sensing regulated proteins-role of bacterial cell-to-cell communication in global gene regulation as assessed by proteomics
-
Eberl L, Riedel K. 2011. Mining quorum sensing regulated proteins-role of bacterial cell-to-cell communication in global gene regulation as assessed by proteomics. Proteomics 11:3070-3085.
-
(2011)
Proteomics
, vol.11
, pp. 3070-3085
-
-
Eberl, L.1
Riedel, K.2
-
16
-
-
0023663179
-
Nucleotide sequence of the regulatory locus controlling expression of bacterial genes for bioluminescence
-
Engebrecht JA, Silverman M. 1987. Nucleotide sequence of the regulatory locus controlling expression of bacterial genes for bioluminescence. Nucleic Acids Res. 15:10455-10467.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 10455-10467
-
-
Engebrecht, J.A.1
Silverman, M.2
-
17
-
-
0030785517
-
Hierarchical autoinduction in Ralstonia solanacearum: control of acyl-homoserine lactone production by a novel autoregulatory system responsive to 3-hydroxypalmitic acid methyl ester
-
Flavier AB, Ganova-Raeva LM, Schell MA, Denny TP. 1997. Hierarchical autoinduction in Ralstonia solanacearum: control of acyl-homoserine lactone production by a novel autoregulatory system responsive to 3-hydroxypalmitic acid methyl ester. J. Bacteriol. 179:7089-7097.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 7089-7097
-
-
Flavier, A.B.1
Ganova-Raeva, L.M.2
Schell, M.A.3
Denny, T.P.4
-
18
-
-
0033985890
-
A genetic analysis of the functions of LuxN: a two-component hybrid sensor kinase that regulates quorum sensing in Vibrio harveyi
-
Freeman JA, Lilley BN, Bassler BL. 2000. A genetic analysis of the functions of LuxN: a two-component hybrid sensor kinase that regulates quorum sensing in Vibrio harveyi. Mol. Microbiol. 35:139-149.
-
(2000)
Mol. Microbiol.
, vol.35
, pp. 139-149
-
-
Freeman, J.A.1
Lilley, B.N.2
Bassler, B.L.3
-
19
-
-
0027957161
-
Quorum sensing in bacteria: the LuxR-LuxI family of cell density-responsive transcriptional regulators
-
Fuqua WC, Winans SC, Greenberg EP. 1994. Quorum sensing in bacteria: the LuxR-LuxI family of cell density-responsive transcriptional regulators. J. Bacteriol. 176:269-275.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 269-275
-
-
Fuqua, W.C.1
Winans, S.C.2
Greenberg, E.P.3
-
20
-
-
0034864223
-
The evolution of bacterial LuxI and LuxR quorum sensing regulators
-
Gray KM, Garey JR. 2001. The evolution of bacterial LuxI and LuxR quorum sensing regulators. Microbiology 147:2379-2387.
-
(2001)
Microbiology
, vol.147
, pp. 2379-2387
-
-
Gray, K.M.1
Garey, J.R.2
-
21
-
-
73349097561
-
Identification and characterization of new LuxR/LuxI-type quorum sensing systems from metagenomic libraries
-
Hao Y, Winans SC, Glick BR, Charles TC. 2010. Identification and characterization of new LuxR/LuxI-type quorum sensing systems from metagenomic libraries. Environ. Microbiol. 12:105-117.
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 105-117
-
-
Hao, Y.1
Winans, S.C.2
Glick, B.R.3
Charles, T.C.4
-
22
-
-
77954545309
-
Isolation and characterization of a 4-nitrotoluene-oxidizing enzyme from activated sludge by a metagenomic approach
-
Kimura N, Sakai K, Nakamura K. 2010. Isolation and characterization of a 4-nitrotoluene-oxidizing enzyme from activated sludge by a metagenomic approach. Microbes Environ. 25:133-139.
-
(2010)
Microbes Environ
, vol.25
, pp. 133-139
-
-
Kimura, N.1
Sakai, K.2
Nakamura, K.3
-
23
-
-
0042921343
-
The microbial community in a 2,4-dinitrophenol-digesting reactor as revealed by 16S rDNA gene analysis
-
Kimura N, Shinozaki Y, Lee TH, Yonezawa Y. 2003. The microbial community in a 2,4-dinitrophenol-digesting reactor as revealed by 16S rDNA gene analysis. J. Biosci. Bioeng. 96:70-75.
-
(2003)
J. Biosci. Bioeng.
, vol.96
, pp. 70-75
-
-
Kimura, N.1
Shinozaki, Y.2
Lee, T.H.3
Yonezawa, Y.4
-
24
-
-
1642541008
-
Quorum sensing-controlled biofilm development in Serratia liquefaciens MG1
-
Labbate M, et al. 2004. Quorum sensing-controlled biofilm development in Serratia liquefaciens MG1. J. Bacteriol. 186:692-698.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 692-698
-
-
Labbate, M.1
-
25
-
-
1942469383
-
The evolutionary history of quorum-sensing systems in bacteria
-
Lerat E, Moran NA. 2004. The evolutionary history of quorum-sensing systems in bacteria. Mol. Biol. Evol. 21:903-913.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 903-913
-
-
Lerat, E.1
Moran, N.A.2
-
26
-
-
0032939099
-
Quorum sensing in Burkholderia cepacia: identification of the LuxRI homologs CepRI
-
Lewenza S, Conway B, Greenberg E, Sokol PA. 1999. Quorum sensing in Burkholderia cepacia: identification of the LuxRI homologs CepRI. J. Bacteriol. 181:748-756.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 748-756
-
-
Lewenza, S.1
Conway, B.2
Greenberg, E.3
Sokol, P.A.4
-
27
-
-
77955791222
-
A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria
-
Lücker S, et al. 2010. A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria. Proc. Natl. Acad. Sci. U. S. A. 107:13479-13484.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 13479-13484
-
-
Lücker, S.1
-
28
-
-
0031467411
-
Quorum sensing and Chromobacterium violaceum: exploitation of violacein production and inhibition for the detection of N-acylhomoserine lactones
-
McClean KH, et al. 1997. Quorum sensing and Chromobacterium violaceum: exploitation of violacein production and inhibition for the detection of N-acylhomoserine lactones. Microbiology 143:3703-3711.
-
(1997)
Microbiology
, vol.143
, pp. 3703-3711
-
-
McClean, K.H.1
-
30
-
-
70349634444
-
Whole genome sequence of Desulfovibrio magneticus strain RS-1 revealed common gene clusters in magnetotactic bacteria
-
Nakazawa H, et al. 2009. Whole genome sequence of Desulfovibrio magneticus strain RS-1 revealed common gene clusters in magnetotactic bacteria. Genome Res. 19:1801-1808.
-
(2009)
Genome Res.
, vol.19
, pp. 1801-1808
-
-
Nakazawa, H.1
-
31
-
-
0027299747
-
Expression of Pseudomonas aeruginosa virulence genes requires cell-to-cell communication
-
Passador L, Cook JM, Gambello MJ, Rust L, Iglewski BH. 1993. Expression of Pseudomonas aeruginosa virulence genes requires cell-to-cell communication. Science 260:1127-1130.
-
(1993)
Science
, vol.260
, pp. 1127-1130
-
-
Passador, L.1
Cook, J.M.2
Gambello, M.J.3
Rust, L.4
Iglewski, B.H.5
-
32
-
-
34047125240
-
Detection of acylated homoserine lactones in gram-negative proteolytic psychrotrophic bacteria isolated from cooled raw milk
-
Pinto UM, de Souza Viana E, Martins ML, Vanetti MCD. 2007. Detection of acylated homoserine lactones in gram-negative proteolytic psychrotrophic bacteria isolated from cooled raw milk. Food Control 18: 1322-1327.
-
(2007)
Food Control
, vol.18
, pp. 1322-1327
-
-
Pinto, U.M.1
de Souza Viana, E.2
Martins, M.L.3
Vanetti, M.C.D.4
-
34
-
-
27544475018
-
A Lux-like quorum sensing system in the extreme acidophile Acidithiobacillus ferrooxidans
-
Rivas M, Seeger M, Holmes DS, Jedlicki E. 2005. A Lux-like quorum sensing system in the extreme acidophile, Acidithiobacillus ferrooxidans. Biol. Res. 38:283-297.
-
(2005)
Biol. Res.
, vol.38
, pp. 283-297
-
-
Rivas, M.1
Seeger, M.2
Holmes, D.S.3
Jedlicki, E.4
-
35
-
-
18844481269
-
Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms
-
Rondon MR, et al. 2000. Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms. Appl. Environ. Microbiol. 66:2541-2547.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 2541-2547
-
-
Rondon, M.R.1
-
36
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
37
-
-
0004136246
-
-
2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook J, Fritsch E, Maniatis T. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1989)
Molecular cloning: a laboratory manual
-
-
Sambrook, J.1
Fritsch, E.2
Maniatis, T.3
-
38
-
-
8644231700
-
Promoter specificity in Pseudomonas aeruginosa quorum sensing revealed by DNA binding of purified LasR
-
Schuster M, Urbanowski ML, Greenberg EP. 2004. Promoter specificity in Pseudomonas aeruginosa quorum sensing revealed by DNA binding of purified LasR. Proc. Natl. Acad. Sci. U. S. A. 101:15833-15839.
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 15833-15839
-
-
Schuster, M.1
Urbanowski, M.L.2
Greenberg, E.P.3
-
39
-
-
47049094874
-
Geobacter uraniireducens sp. nov., isolated from subsurface sediment undergoing uranium bioremediation
-
Shelobolina ES, Vrionis HA, Findlay RH, Lovley DR. 2008. Geobacter uraniireducens sp. nov., isolated from subsurface sediment undergoing uranium bioremediation. Int. J. Syst. Evol. Microbiol. 58:1075-1078.
-
(2008)
Int. J. Syst. Evol. Microbiol.
, vol.58
, pp. 1075-1078
-
-
Shelobolina, E.S.1
Vrionis, H.A.2
Findlay, R.H.3
Lovley, D.R.4
-
40
-
-
48349103531
-
Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation
-
Simmons SL, et al. 2008. Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation. PLoS Biol. 6:1427-1442.
-
(2008)
PLoS Biol
, vol.6
, pp. 1427-1442
-
-
Simmons, S.L.1
-
41
-
-
34547748431
-
Functional screening of a metagenomic library for genes involved in microbial degradation of aromatic compounds
-
Suenaga H, Ohnuki T, Miyazaki K. 2007. Functional screening of a metagenomic library for genes involved in microbial degradation of aromatic compounds. Environ. Microbiol. 9:2289-2297.
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 2289-2297
-
-
Suenaga, H.1
Ohnuki, T.2
Miyazaki, K.3
-
42
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4 0
-
Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
43
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
44
-
-
1842614247
-
N-Acyl-Lhomoserine lactones (AHLs) affect microbial community composition and function in activated sludge
-
Valle A, Bailey MJ, Whiteley AS, Manefield M. 2004. N-Acyl-Lhomoserine lactones (AHLs) affect microbial community composition and function in activated sludge. Environ. Microbiol. 6:424-433.
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 424-433
-
-
Valle, A.1
Bailey, M.J.2
Whiteley, A.S.3
Manefield, M.4
-
45
-
-
0034886912
-
Quorum-sensing in Gram-negative bacteria
-
Whitehead NA, Barnard AM, Slater H, Simpson NJ, Salmond GP. 2001. Quorum-sensing in Gram-negative bacteria. FEMSMicrobiol. Rev. 25:365-404.
-
(2001)
FEMSMicrobiol. Rev.
, vol.25
, pp. 365-404
-
-
Whitehead, N.A.1
Barnard, A.M.2
Slater, H.3
Simpson, N.J.4
Salmond, G.P.5
-
47
-
-
26844491940
-
Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor
-
Williamson LL, et al. 2005. Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor. Appl. Environ. Microbiol. 71:6335-6344.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 6335-6344
-
-
Williamson, L.L.1
-
48
-
-
29644434597
-
Role of the luxS quorum-sensing system in biofilm formation and virulence of Staphylococcus epidermidis
-
Xu L, et al. 2006. Role of the luxS quorum-sensing system in biofilm formation and virulence of Staphylococcus epidermidis. Infect. Immun. 74:488-496.
-
(2006)
Infect. Immun.
, vol.74
, pp. 488-496
-
-
Xu, L.1
-
49
-
-
84862785613
-
Acyl homoserine lactone-based quorum sensing in a methanogenic archaeon
-
Zhang G, et al. 2012. Acyl homoserine lactone-based quorum sensing in a methanogenic archaeon. ISME J. 6:1336-1344.
-
(2012)
ISME J
, vol.6
, pp. 1336-1344
-
-
Zhang, G.1
-
50
-
-
48349088742
-
Molecular cloning, genetic organization of gene cluster encoding phenol hydroxylase and catechol 2,3-dioxygenase in Alcaligenes faecalis IS-46. World J
-
Zhu C, Zhang L, Zhao L. 2008. Molecular cloning, genetic organization of gene cluster encoding phenol hydroxylase and catechol 2,3-dioxygenase in Alcaligenes faecalis IS-46. World J. Microbiol. Biotechnol. 24:1687-1695.
-
(2008)
Microbiol. Biotechnol.
, vol.24
, pp. 1687-1695
-
-
Zhu, C.1
Zhang, L.2
Zhao, L.3
|