-
1
-
-
84889256682
-
Functional roles of pulsing in genetic circuits
-
Levine J.H., Lin Y., Elowitz M.B. Functional roles of pulsing in genetic circuits. Science 2013, 342:1193-1200.
-
(2013)
Science
, vol.342
, pp. 1193-1200
-
-
Levine, J.H.1
Lin, Y.2
Elowitz, M.B.3
-
3
-
-
79952672993
-
Impulse control: temporal dynamics in gene transcription
-
Yosef N., Regev A. Impulse control: temporal dynamics in gene transcription. Cell 2011, 144:886-896.
-
(2011)
Cell
, vol.144
, pp. 886-896
-
-
Yosef, N.1
Regev, A.2
-
4
-
-
84874765320
-
Encoding and decoding cellular information through signaling dynamics
-
Purvis J.E., Lahav G. Encoding and decoding cellular information through signaling dynamics. Cell 2013, 152:945-956.
-
(2013)
Cell
, vol.152
, pp. 945-956
-
-
Purvis, J.E.1
Lahav, G.2
-
5
-
-
4644326931
-
Genomic analysis of regulatory network dynamics reveals large topological changes
-
Luscombe N.M., Babu M.M., Yu H., Snyder M., Teichmann S.A., Gerstein M. Genomic analysis of regulatory network dynamics reveals large topological changes. Nature 2004, 431:308-312.
-
(2004)
Nature
, vol.431
, pp. 308-312
-
-
Luscombe, N.M.1
Babu, M.M.2
Yu, H.3
Snyder, M.4
Teichmann, S.A.5
Gerstein, M.6
-
6
-
-
34247464637
-
Revealing static and dynamic modular architecture of the eukaryotic protein interaction network
-
Komurov K., White M. Revealing static and dynamic modular architecture of the eukaryotic protein interaction network. Mol Syst Biol 2007, 3:110.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 110
-
-
Komurov, K.1
White, M.2
-
7
-
-
78649703966
-
Rewiring of genetic networks in response to DNA damage
-
Bandyopadhyay S., Mehta M., Kuo D., Sung M.-K., Chuang R., Jaehnig E.J., Bodenmiller B., Licon K., Copeland W., Shales M., et al. Rewiring of genetic networks in response to DNA damage. Science 2010, 330:1385-1389.
-
(2010)
Science
, vol.330
, pp. 1385-1389
-
-
Bandyopadhyay, S.1
Mehta, M.2
Kuo, D.3
Sung, M.-K.4
Chuang, R.5
Jaehnig, E.J.6
Bodenmiller, B.7
Licon, K.8
Copeland, W.9
Shales, M.10
-
8
-
-
84856094560
-
Differential network biology
-
Ideker T., Krogan N.J. Differential network biology. Mol Syst Biol 2012, 8:565.
-
(2012)
Mol Syst Biol
, vol.8
, pp. 565
-
-
Ideker, T.1
Krogan, N.J.2
-
9
-
-
84863525909
-
How networks change with time
-
Park Y., Bader J.S. How networks change with time. Bioinformatics 2012, 28:i40-i48.
-
(2012)
Bioinformatics
, vol.28
, pp. i40-i48
-
-
Park, Y.1
Bader, J.S.2
-
10
-
-
0742305866
-
Network biology: understanding the cell's functional organization
-
Barabási A.-L., Oltvai Z.N. Network biology: understanding the cell's functional organization. Nat Rev Genet 2004, 5:101-113.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 101-113
-
-
Barabási, A.-L.1
Oltvai, Z.N.2
-
11
-
-
33748846417
-
Transcriptional regulatory networks in bacteria: from input signals to output responses
-
Seshasayee A.S.N., Bertone P., Fraser G.M., Luscombe N.M. Transcriptional regulatory networks in bacteria: from input signals to output responses. Curr Opin Microbiol 2006, 9:511-519.
-
(2006)
Curr Opin Microbiol
, vol.9
, pp. 511-519
-
-
Seshasayee, A.S.N.1
Bertone, P.2
Fraser, G.M.3
Luscombe, N.M.4
-
12
-
-
66149163332
-
Dynamic and complex transcription factor binding during an inducible response in yeast
-
Ni L., Bruce C., Hart C., Leigh-Bell J., Gelperin D., Umansky L., Gerstein M.B., Snyder M. Dynamic and complex transcription factor binding during an inducible response in yeast. Genes Develop 2009, 23:1351-1363.
-
(2009)
Genes Develop
, vol.23
, pp. 1351-1363
-
-
Ni, L.1
Bruce, C.2
Hart, C.3
Leigh-Bell, J.4
Gelperin, D.5
Umansky, L.6
Gerstein, M.B.7
Snyder, M.8
-
14
-
-
70350452758
-
Understanding modularity in molecular networks requires dynamics
-
pe44-pe44
-
Alexander R.P., Kim P.M., Emonet T., Gerstein M.B. Understanding modularity in molecular networks requires dynamics. Sci Signal 2009, 2. pe44-pe44.
-
(2009)
Sci Signal
, vol.2
-
-
Alexander, R.P.1
Kim, P.M.2
Emonet, T.3
Gerstein, M.B.4
-
15
-
-
84902823142
-
Optogenetic characterization methods overcome key challenges in synthetic and systems biology
-
Olson E.J., Tabor J.J. Optogenetic characterization methods overcome key challenges in synthetic and systems biology. Nature Chem Biol 2014, 10:502-511.
-
(2014)
Nature Chem Biol
, vol.10
, pp. 502-511
-
-
Olson, E.J.1
Tabor, J.J.2
-
16
-
-
84874629638
-
Rate of environmental change determines stress response specificity
-
Young J.W., Locke J.C.W., Elowitz M.B. Rate of environmental change determines stress response specificity. Proc Natl Acad Sci USA 2013, 110:4140-4145.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 4140-4145
-
-
Young, J.W.1
Locke, J.C.W.2
Elowitz, M.B.3
-
17
-
-
84855493791
-
Antagonistic gene transcripts regulate adaptation to new growth environments
-
Baumgartner B.L., Bennett M.R., Ferry M., Johnson T.L., Tsimring L.S., Hasty J. Antagonistic gene transcripts regulate adaptation to new growth environments. Proc Natl Acad Sci 2011, 108:21087-21092.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 21087-21092
-
-
Baumgartner, B.L.1
Bennett, M.R.2
Ferry, M.3
Johnson, T.L.4
Tsimring, L.S.5
Hasty, J.6
-
18
-
-
24044453695
-
A microfluidic chemostat for experiments with bacterial and yeast cells
-
Groisman A., Lobo C., Cho H., Campbell J.K., Dufour Y.S., Stevens A.M., Levchenko A. A microfluidic chemostat for experiments with bacterial and yeast cells. Nat Methods 2005, 2:685-689.
-
(2005)
Nat Methods
, vol.2
, pp. 685-689
-
-
Groisman, A.1
Lobo, C.2
Cho, H.3
Campbell, J.K.4
Dufour, Y.S.5
Stevens, A.M.6
Levchenko, A.7
-
19
-
-
84857766780
-
Diverse sensitivity thresholds in dynamic signaling responses by social amoebae
-
ra17-ra17
-
Wang C.J., Bergmann A., Lin B., Kim K., Levchenko A. Diverse sensitivity thresholds in dynamic signaling responses by social amoebae. Sci Signal 2012, 5. ra17-ra17.
-
(2012)
Sci Signal
, vol.5
-
-
Wang, C.J.1
Bergmann, A.2
Lin, B.3
Kim, K.4
Levchenko, A.5
-
20
-
-
34547607675
-
A synthetic gene network for tuning protein degradation in Saccharomyces cerevisiae
-
Grilly C., Stricker J., Pang W.L., Bennett M.R., Hasty J. A synthetic gene network for tuning protein degradation in Saccharomyces cerevisiae. Mol Syst Biol 2007, 3:127.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 127
-
-
Grilly, C.1
Stricker, J.2
Pang, W.L.3
Bennett, M.R.4
Hasty, J.5
-
21
-
-
50649120833
-
Metabolic gene regulation in a dynamically changing environment
-
Bennett M.R., Pang W.L., Ostroff N.A., Baumgartner B.L., Nayak S., Tsimring L.S., Hasty J. Metabolic gene regulation in a dynamically changing environment. Nature 2008, 454:1119-1122.
-
(2008)
Nature
, vol.454
, pp. 1119-1122
-
-
Bennett, M.R.1
Pang, W.L.2
Ostroff, N.A.3
Baumgartner, B.L.4
Nayak, S.5
Tsimring, L.S.6
Hasty, J.7
-
22
-
-
31044433976
-
Transcriptional response of steady-state yeast cultures to transient perturbations in carbon source
-
Ronen M., Botstein D. Transcriptional response of steady-state yeast cultures to transient perturbations in carbon source. Proc Natl Acad Sci USA 2006, 103:389-394.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 389-394
-
-
Ronen, M.1
Botstein, D.2
-
23
-
-
84864751449
-
Perturbation-based analysis and modeling of combinatorial regulation in the yeast sulfur assimilation pathway
-
McIsaac R.S., Petti A.A., Bussemaker H.J., Botstein D. Perturbation-based analysis and modeling of combinatorial regulation in the yeast sulfur assimilation pathway. Mol Biol Cell 2012, 23:2993-3007.
-
(2012)
Mol Biol Cell
, vol.23
, pp. 2993-3007
-
-
McIsaac, R.S.1
Petti, A.A.2
Bussemaker, H.J.3
Botstein, D.4
-
24
-
-
84855424553
-
Signal-dependent dynamics of transcription factor translocation controls gene expression
-
Hao N., O'Shea E.K. Signal-dependent dynamics of transcription factor translocation controls gene expression. Nat Struct Mol Biol 2012, 19:31-39.
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 31-39
-
-
Hao, N.1
O'Shea, E.K.2
-
25
-
-
84872813837
-
Tunable signal processing through modular control of transcription factor translocation
-
Hao N., Budnik B.A., Gunawardena J., O'Shea E.K. Tunable signal processing through modular control of transcription factor translocation. Science 2013, 339:460-464.
-
(2013)
Science
, vol.339
, pp. 460-464
-
-
Hao, N.1
Budnik, B.A.2
Gunawardena, J.3
O'Shea, E.K.4
-
26
-
-
84903707504
-
Recapitulation of the forward nuclear auxin response pathway in yeast
-
Pierre-Jerome E., Jang S.S., Havens K.A., Nemhauser J.L., Klavins E. Recapitulation of the forward nuclear auxin response pathway in yeast. Proc Natl Acad Sci 2014, 111:9407-9412.
-
(2014)
Proc Natl Acad Sci
, vol.111
, pp. 9407-9412
-
-
Pierre-Jerome, E.1
Jang, S.S.2
Havens, K.A.3
Nemhauser, J.L.4
Klavins, E.5
-
27
-
-
67649669252
-
A systems-level analysis of perfect adaptation in yeast osmoregulation
-
Muzzey D., Gómez-Uribe C.A., Mettetal J.T., van Oudenaarden A. A systems-level analysis of perfect adaptation in yeast osmoregulation. Cell 2009, 138:160-171.
-
(2009)
Cell
, vol.138
, pp. 160-171
-
-
Muzzey, D.1
Gómez-Uribe, C.A.2
Mettetal, J.T.3
van Oudenaarden, A.4
-
28
-
-
38549084632
-
The frequency dependence of osmo-adaptation in Saccharomyces cerevisiae
-
Mettetal J.T., Muzzey D., Gómez-Uribe C., van Oudenaarden A. The frequency dependence of osmo-adaptation in Saccharomyces cerevisiae. Science 2008, 319:482-484.
-
(2008)
Science
, vol.319
, pp. 482-484
-
-
Mettetal, J.T.1
Muzzey, D.2
Gómez-Uribe, C.3
van Oudenaarden, A.4
-
29
-
-
44449100825
-
Signal processing by the HOG MAP kinase pathway
-
Hersen P., McClean M.N., Mahadevan L., Ramanathan S. Signal processing by the HOG MAP kinase pathway. Proc Natl Acad Sci 2008, 105:7165-7170.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 7165-7170
-
-
Hersen, P.1
McClean, M.N.2
Mahadevan, L.3
Ramanathan, S.4
-
30
-
-
77954024185
-
A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli
-
Shimizu T.S., Tu Y., Berg H.C. A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli. Mol Syst Biol 2010, 6:382.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 382
-
-
Shimizu, T.S.1
Tu, Y.2
Berg, H.C.3
-
31
-
-
84880789957
-
Feedforward regulation ensures stability and rapid reversibility of a cellular state
-
Doncic A., Skotheim J.M. Feedforward regulation ensures stability and rapid reversibility of a cellular state. Mol Cell 2013, 50:856-868.
-
(2013)
Mol Cell
, vol.50
, pp. 856-868
-
-
Doncic, A.1
Skotheim, J.M.2
-
32
-
-
80051720034
-
Distinct interactions select and maintain a specific cell fate
-
Doncic A., Falleur-Fettig M., Skotheim J.M. Distinct interactions select and maintain a specific cell fate. Mol Cell 2011, 43:528-539.
-
(2011)
Mol Cell
, vol.43
, pp. 528-539
-
-
Doncic, A.1
Falleur-Fettig, M.2
Skotheim, J.M.3
-
33
-
-
62649094918
-
Dynamic analysis of MAPK signaling using a high-throughput microfluidic single-cell imaging platform
-
Taylor R.J., Falconnet D., Niemistö A., Ramsey S.A., Prinz S., Shmulevich I., Galitski T., Hansen C.L. Dynamic analysis of MAPK signaling using a high-throughput microfluidic single-cell imaging platform. Proc Natl Acad Sci 2009, 106:3758-3763.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 3758-3763
-
-
Taylor, R.J.1
Falconnet, D.2
Niemistö, A.3
Ramsey, S.A.4
Prinz, S.5
Shmulevich, I.6
Galitski, T.7
Hansen, C.L.8
-
34
-
-
79955753549
-
Transient activation of the HOG-MAPK pathway regulates bimodal gene expression
-
Pelet S., Rudolf F., Nadal-Ribelles M., de Nadal E., Posas F., Peter M. Transient activation of the HOG-MAPK pathway regulates bimodal gene expression. Science 2011, 332:732-735.
-
(2011)
Science
, vol.332
, pp. 732-735
-
-
Pelet, S.1
Rudolf, F.2
Nadal-Ribelles, M.3
de Nadal, E.4
Posas, F.5
Peter, M.6
-
35
-
-
0024500464
-
Upstream activation sequence-dependent alteration of chromatin structure and transcription activation of the yeast GAL1-GAL10 genes
-
Fedor M.J., Kornberg R.D. Upstream activation sequence-dependent alteration of chromatin structure and transcription activation of the yeast GAL1-GAL10 genes. Mol Cell Biol 1989, 9:1721-1732.
-
(1989)
Mol Cell Biol
, vol.9
, pp. 1721-1732
-
-
Fedor, M.J.1
Kornberg, R.D.2
-
36
-
-
84886678203
-
Measuring competitive fitness in dynamic environments
-
Razinkov I.A., Baumgartner B.L., Bennett M.R., Tsimring L.S., Hasty J. Measuring competitive fitness in dynamic environments. J Phys Chem B 2013, 117:13175-13181.
-
(2013)
J Phys Chem B
, vol.117
, pp. 13175-13181
-
-
Razinkov, I.A.1
Baumgartner, B.L.2
Bennett, M.R.3
Tsimring, L.S.4
Hasty, J.5
-
37
-
-
70350336588
-
Architecture-dependent noise discriminates functionally analogous differentiation circuits
-
Çağatay T., Turcotte M., Elowitz M.B., Garcia-Ojalvo J., Süel G.M. Architecture-dependent noise discriminates functionally analogous differentiation circuits. Cell 2009, 139:512-522.
-
(2009)
Cell
, vol.139
, pp. 512-522
-
-
Çağatay, T.1
Turcotte, M.2
Elowitz, M.B.3
Garcia-Ojalvo, J.4
Süel, G.M.5
-
38
-
-
83455164706
-
Temporal competition between differentiation programs determines cell fate choice
-
Kuchina A., Espinar L., Çağatay T., Balbin A.O., Zhang F., Alvarado A., Garcia-Ojalvo J., Süel G.M. Temporal competition between differentiation programs determines cell fate choice. Mol Syst Biol 2011, 7:557.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 557
-
-
Kuchina, A.1
Espinar, L.2
Çağatay, T.3
Balbin, A.O.4
Zhang, F.5
Alvarado, A.6
Garcia-Ojalvo, J.7
Süel, G.M.8
-
39
-
-
84884704805
-
Triggering sporulation in Bacillus subtilis with artificial two-component systems reveals the importance of proper Spo0A activation dynamics
-
Vishnoi M., Narula J., Devi S.N., Dao H.-A., Igoshin O.A., Fujita M. Triggering sporulation in Bacillus subtilis with artificial two-component systems reveals the importance of proper Spo0A activation dynamics. Mol Microbiol 2013, 90:181-194.
-
(2013)
Mol Microbiol
, vol.90
, pp. 181-194
-
-
Vishnoi, M.1
Narula, J.2
Devi, S.N.3
Dao, H.-A.4
Igoshin, O.A.5
Fujita, M.6
-
40
-
-
39649083113
-
Induction and relaxation dynamics of the regulatory network controlling the type III secretion system encoded within Salmonella pathogenicity island 1
-
Temme K., Salis H., Tullman-Ercek D., Levskaya A., Hong S.-H., Voigt C.A. Induction and relaxation dynamics of the regulatory network controlling the type III secretion system encoded within Salmonella pathogenicity island 1. J Mol Biol 2008, 377:47-61.
-
(2008)
J Mol Biol
, vol.377
, pp. 47-61
-
-
Temme, K.1
Salis, H.2
Tullman-Ercek, D.3
Levskaya, A.4
Hong, S.-H.5
Voigt, C.A.6
-
41
-
-
24944483644
-
Evidence that entry into sporulation in Bacillus subtilis is governed by a gradual increase in the level and activity of the master regulator Spo0A
-
Fujita M., Losick R. Evidence that entry into sporulation in Bacillus subtilis is governed by a gradual increase in the level and activity of the master regulator Spo0A. Genes Dev 2005, 19:2236-2244.
-
(2005)
Genes Dev
, vol.19
, pp. 2236-2244
-
-
Fujita, M.1
Losick, R.2
-
42
-
-
84874412536
-
Ultrasensitivity of the Bacillus subtilis sporulation decision
-
Narula J., Devi S.N., Fujita M., Igoshin O.A. Ultrasensitivity of the Bacillus subtilis sporulation decision. Proc Natl Acad Sci USA 2012, 109:E3513-E3522.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. E3513-E3522
-
-
Narula, J.1
Devi, S.N.2
Fujita, M.3
Igoshin, O.A.4
-
43
-
-
38349081513
-
A negative feedback loop involving small RNAs accelerates Vibrio cholerae's transition out of quorum-sensing mode
-
Svenningsen S.L., Waters C.M., Bassler B.L. A negative feedback loop involving small RNAs accelerates Vibrio cholerae's transition out of quorum-sensing mode. Genes Dev 2008, 22:226-238.
-
(2008)
Genes Dev
, vol.22
, pp. 226-238
-
-
Svenningsen, S.L.1
Waters, C.M.2
Bassler, B.L.3
-
44
-
-
80054837496
-
Stochastic pulse regulation in bacterial stress response
-
Locke J.C.W., Young J.W., Fontes M., Hernández Jiménez M.J., Elowitz M.B. Stochastic pulse regulation in bacterial stress response. Science 2011, 334:366-369.
-
(2011)
Science
, vol.334
, pp. 366-369
-
-
Locke, J.C.W.1
Young, J.W.2
Fontes, M.3
Hernández Jiménez, M.J.4
Elowitz, M.B.5
-
45
-
-
84908460076
-
A nutrient-tunable bistable switch controls motility in Salmonella enterica serovar Typhimurium
-
Koirala S., Mears P., Sim M., Golding I., Chemla Y.R., Aldridge P.D., Rao C.V. A nutrient-tunable bistable switch controls motility in Salmonella enterica serovar Typhimurium. MBio 2014, 5:e01611-e1614.
-
(2014)
MBio
, vol.5
, pp. e01611-e1614
-
-
Koirala, S.1
Mears, P.2
Sim, M.3
Golding, I.4
Chemla, Y.R.5
Aldridge, P.D.6
Rao, C.V.7
-
46
-
-
77952903892
-
Rewiring cells: synthetic biology as a tool to interrogate the organizational principles of living systems
-
Bashor C.J., Horwitz A.A., Peisajovich S.G., Lim W.A. Rewiring cells: synthetic biology as a tool to interrogate the organizational principles of living systems. Annu Rev Biophys 2010, 39:515-537.
-
(2010)
Annu Rev Biophys
, vol.39
, pp. 515-537
-
-
Bashor, C.J.1
Horwitz, A.A.2
Peisajovich, S.G.3
Lim, W.A.4
-
47
-
-
84920468768
-
A DNA damage-induced. SOS-independent checkpoint regulates cell division in Caulobacter crescentus
-
Modell J.W., Kambara T.K., Perchuk B.S., Laub M.T. A DNA damage-induced. SOS-independent checkpoint regulates cell division in Caulobacter crescentus. PLoS Biol 2014, 12:e1001977.
-
(2014)
PLoS Biol
, vol.12
, pp. e1001977
-
-
Modell, J.W.1
Kambara, T.K.2
Perchuk, B.S.3
Laub, M.T.4
-
48
-
-
0027524272
-
Regulation of the phosphorelay and the initiation of sporulation in Bacillus subtilis
-
Hoch J.A. Regulation of the phosphorelay and the initiation of sporulation in Bacillus subtilis. Ann Rev. Microbiol. 1993, 47:441-465.
-
(1993)
Ann Rev. Microbiol.
, vol.47
, pp. 441-465
-
-
Hoch, J.A.1
-
49
-
-
0029565061
-
Genetic networks controlling the initiation of sporulation and the development of genetic competence in Bacillus subtilis
-
Grossman A.D. Genetic networks controlling the initiation of sporulation and the development of genetic competence in Bacillus subtilis. Annu Rev Genet 1995, 29:477-508.
-
(1995)
Annu Rev Genet
, vol.29
, pp. 477-508
-
-
Grossman, A.D.1
-
50
-
-
69249235738
-
A mechanism for cell cycle regulation of sporulation initiation in Bacillus subtilis
-
Veening J.W., Murray H., Errington J. A mechanism for cell cycle regulation of sporulation initiation in Bacillus subtilis. Genes Dev 2009, 23:1959-1970.
-
(2009)
Genes Dev
, vol.23
, pp. 1959-1970
-
-
Veening, J.W.1
Murray, H.2
Errington, J.3
-
51
-
-
84856463001
-
Pulsed feedback defers cellular differentiation
-
Levine J.H., Fontes M.E., Dworkin J., Elowitz M.B. Pulsed feedback defers cellular differentiation. PLoS Biol 2012, 10:e1001252.
-
(2012)
PLoS Biol
, vol.10
, pp. e1001252
-
-
Levine, J.H.1
Fontes, M.E.2
Dworkin, J.3
Elowitz, M.B.4
-
52
-
-
84901649750
-
In-vivo real-time control of protein expression from endogenous and synthetic gene networks
-
Menolascina F., Fiore G., Orabona E., De Stefano L., Ferry M., Hasty J., di Bernardo M., di Bernardo D. In-vivo real-time control of protein expression from endogenous and synthetic gene networks. PLoS Comput Biol 2014, 10:e1003625.
-
(2014)
PLoS Comput Biol
, vol.10
, pp. e1003625
-
-
Menolascina, F.1
Fiore, G.2
Orabona, E.3
De Stefano, L.4
Ferry, M.5
Hasty, J.6
di Bernardo, M.7
di Bernardo, D.8
-
53
-
-
84865536748
-
Long-term model predictive control of gene expression at the population and single-cell levels
-
Uhlendorf J., Miermont A., Delaveau T., Charvin G., Fages F., Bottani S., Batt G., Hersen P. Long-term model predictive control of gene expression at the population and single-cell levels. Proc Natl Acad Sci USA 2012, 109:14271-14276.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 14271-14276
-
-
Uhlendorf, J.1
Miermont, A.2
Delaveau, T.3
Charvin, G.4
Fages, F.5
Bottani, S.6
Batt, G.7
Hersen, P.8
-
54
-
-
84889261450
-
Promoter decoding of transcription factor dynamics involves a trade-off between noise and control of gene expression
-
Hansen A.S., O'Shea E.K. Promoter decoding of transcription factor dynamics involves a trade-off between noise and control of gene expression. Mol Syst Biol 2013, 9:704.
-
(2013)
Mol Syst Biol
, vol.9
, pp. 704
-
-
Hansen, A.S.1
O'Shea, E.K.2
-
55
-
-
84897954571
-
Characterizing bacterial gene circuit dynamics with optically programmed gene expression signals
-
Olson E.J., Hartsough L.A., Landry B.P., Shroff R., Tabor J.J. Characterizing bacterial gene circuit dynamics with optically programmed gene expression signals. Nat Methods 2014, 11:449-455.
-
(2014)
Nat Methods
, vol.11
, pp. 449-455
-
-
Olson, E.J.1
Hartsough, L.A.2
Landry, B.P.3
Shroff, R.4
Tabor, J.J.5
-
56
-
-
83255165732
-
In silico feedback for in vivo regulation of a gene expression circuit
-
Milias-Argeitis A., Summers S., Stewart-Ornstein J., Zuleta I., Pincus D., El-Samad H., Khammash M., Lygeros J. In silico feedback for in vivo regulation of a gene expression circuit. Nat Biotechnol 2011, 29:1114-1116.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 1114-1116
-
-
Milias-Argeitis, A.1
Summers, S.2
Stewart-Ornstein, J.3
Zuleta, I.4
Pincus, D.5
El-Samad, H.6
Khammash, M.7
Lygeros, J.8
-
57
-
-
84896823392
-
Real-time optogenetic control of intracellular protein concentration in microbial cell cultures
-
Melendez J., Patel M., Oakes B.L., Xu P., Morton P., McClean M.N. Real-time optogenetic control of intracellular protein concentration in microbial cell cultures. Integr Biol (Camb) 2014, 6:366-372.
-
(2014)
Integr Biol (Camb)
, vol.6
, pp. 366-372
-
-
Melendez, J.1
Patel, M.2
Oakes, B.L.3
Xu, P.4
Morton, P.5
McClean, M.N.6
-
58
-
-
84882676796
-
Retroactivity controls the temporal dynamics of gene transcription
-
Jayanthi S., Nilgiriwala K.S., Del Vecchio D. Retroactivity controls the temporal dynamics of gene transcription. ACS Synth Biol 2013, 2:431-441.
-
(2013)
ACS Synth Biol
, vol.2
, pp. 431-441
-
-
Jayanthi, S.1
Nilgiriwala, K.S.2
Del Vecchio, D.3
-
59
-
-
80054039227
-
Load-induced modulation of signal transduction networks
-
ra67-ra67
-
Jiang P., Ventura A.C., Sontag E.D., Merajver S.D., Ninfa A.J., Del Vecchio D. Load-induced modulation of signal transduction networks. Sci Signal 2011, 4. ra67-ra67.
-
(2011)
Sci Signal
, vol.4
-
-
Jiang, P.1
Ventura, A.C.2
Sontag, E.D.3
Merajver, S.D.4
Ninfa, A.J.5
Del Vecchio, D.6
-
60
-
-
84863322344
-
Contextualizing context for synthetic biology-identifying causes of failure of synthetic biological systems
-
Cardinale S., Arkin A.P. Contextualizing context for synthetic biology-identifying causes of failure of synthetic biological systems. Biotech J 2012, 7:856-866.
-
(2012)
Biotech J
, vol.7
, pp. 856-866
-
-
Cardinale, S.1
Arkin, A.P.2
-
61
-
-
84868625270
-
Queueing up for enzymatic processing: correlated signaling through coupled degradation
-
Cookson N.A., Mather W.H., Danino T., Mondragón-Palomino O., Williams R.J., Tsimring L.S., Hasty J. Queueing up for enzymatic processing: correlated signaling through coupled degradation. Mol Syst Biol 2011, 7:561.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 561
-
-
Cookson, N.A.1
Mather, W.H.2
Danino, T.3
Mondragón-Palomino, O.4
Williams, R.J.5
Tsimring, L.S.6
Hasty, J.7
-
62
-
-
84898931419
-
Rapid and tunable post-translational coupling of genetic circuits
-
Prindle A., Selimkhanov J., Li H., Razinkov I., Tsimring L.S., Hasty J. Rapid and tunable post-translational coupling of genetic circuits. Nature 2014, 508:387-391.
-
(2014)
Nature
, vol.508
, pp. 387-391
-
-
Prindle, A.1
Selimkhanov, J.2
Li, H.3
Razinkov, I.4
Tsimring, L.S.5
Hasty, J.6
-
63
-
-
70350324632
-
Emergent bistability by a growth-modulating positive feedback circuit
-
Tan C., Marguet P., You L. Emergent bistability by a growth-modulating positive feedback circuit. Nature Chem Biol 2009, 5:842-848.
-
(2009)
Nature Chem Biol
, vol.5
, pp. 842-848
-
-
Tan, C.1
Marguet, P.2
You, L.3
-
64
-
-
45849128019
-
Engineering stochasticity in gene expression
-
Tabor J.J., Bayer T.S., Simpson Z.B., Levy M., Ellington A.D. Engineering stochasticity in gene expression. Mol Biosyst 2008, 4:754-761.
-
(2008)
Mol Biosyst
, vol.4
, pp. 754-761
-
-
Tabor, J.J.1
Bayer, T.S.2
Simpson, Z.B.3
Levy, M.4
Ellington, A.D.5
-
65
-
-
84896392369
-
The transcription factor titration effect dictates level of gene expression
-
Brewster R.C., Weinert F.M., Garcia H.G., Song D., Rydenfelt M., Phillips R. The transcription factor titration effect dictates level of gene expression. Cell 2014, 156:1312-1323.
-
(2014)
Cell
, vol.156
, pp. 1312-1323
-
-
Brewster, R.C.1
Weinert, F.M.2
Garcia, H.G.3
Song, D.4
Rydenfelt, M.5
Phillips, R.6
-
66
-
-
84880772006
-
Effects of genetic variation on the E. coli host-circuit interface
-
Cardinale S., Joachimiak M.P., Arkin A.P. Effects of genetic variation on the E. coli host-circuit interface. Cell Rep 2013, 4:231-237.
-
(2013)
Cell Rep
, vol.4
, pp. 231-237
-
-
Cardinale, S.1
Joachimiak, M.P.2
Arkin, A.P.3
-
67
-
-
84890217908
-
A wise consistency: engineering biology for conformity, reliability, predictability
-
Arkin A.P. A wise consistency: engineering biology for conformity, reliability, predictability. Curr Opin Chem Biol 2013, 17:893-901.
-
(2013)
Curr Opin Chem Biol
, vol.17
, pp. 893-901
-
-
Arkin, A.P.1
-
69
-
-
79955753549
-
Transient activation of the HOG MAPK pathway regulates bimodal gene expression
-
Pelet S., Rudolf F., Nadal-Ribelles M., de Nadal E., Posas F., Peter M. Transient activation of the HOG MAPK pathway regulates bimodal gene expression. Science 2011, 332:732-735.
-
(2011)
Science
, vol.332
, pp. 732-735
-
-
Pelet, S.1
Rudolf, F.2
Nadal-Ribelles, M.3
de Nadal, E.4
Posas, F.5
Peter, M.6
-
70
-
-
18844457339
-
The use of oscillatory signals in the study of genetic networks
-
Lipan O., Wong W.H. The use of oscillatory signals in the study of genetic networks. Proc Natl Acad Sci USA 2005, 102:7063-7068.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 7063-7068
-
-
Lipan, O.1
Wong, W.H.2
-
71
-
-
78650908729
-
Probing the input-output behavior of biochemical and genetic systems system identification methods from control theory
-
Ang J., Ingalls B., McMillen D. Probing the input-output behavior of biochemical and genetic systems system identification methods from control theory. Meth Enzymol 2011, 487:279-317.
-
(2011)
Meth Enzymol
, vol.487
, pp. 279-317
-
-
Ang, J.1
Ingalls, B.2
McMillen, D.3
-
72
-
-
67349227164
-
Pulsing cells: how fast is too fast?
-
Paliwal S., Wang C.J., Levchenko A. Pulsing cells: how fast is too fast?. HFSP J 2008, 2:251-256.
-
(2008)
HFSP J
, vol.2
, pp. 251-256
-
-
Paliwal, S.1
Wang, C.J.2
Levchenko, A.3
-
73
-
-
84865135567
-
Bacterial virulence proteins as tools to rewire kinase pathways in yeast and immune cells
-
Wei P., Wong W.W., Park J.S., Corcoran E.E., Peisajovich S.G., Onuffer J.J., Weiss A., Lim W.A. Bacterial virulence proteins as tools to rewire kinase pathways in yeast and immune cells. Nature 2012, 488:384-388.
-
(2012)
Nature
, vol.488
, pp. 384-388
-
-
Wei, P.1
Wong, W.W.2
Park, J.S.3
Corcoran, E.E.4
Peisajovich, S.G.5
Onuffer, J.J.6
Weiss, A.7
Lim, W.A.8
-
74
-
-
84869456236
-
Modelling reveals novel roles of two parallel signalling pathways and homeostatic feedbacks in yeast
-
Schaber J., Baltanas R., Bush A., Klipp E., Colman-Lerner A. Modelling reveals novel roles of two parallel signalling pathways and homeostatic feedbacks in yeast. Mol Syst Biol 2012, 8:622.
-
(2012)
Mol Syst Biol
, vol.8
, pp. 622
-
-
Schaber, J.1
Baltanas, R.2
Bush, A.3
Klipp, E.4
Colman-Lerner, A.5
-
75
-
-
84865283318
-
Post-translational tools expand the scope of synthetic biology
-
Olson E.J., Tabor J.J. Post-translational tools expand the scope of synthetic biology. Curr Opin Chem Biol 2012, 16:300-306.
-
(2012)
Curr Opin Chem Biol
, vol.16
, pp. 300-306
-
-
Olson, E.J.1
Tabor, J.J.2
-
76
-
-
0034461764
-
Regulatable arabinose-inducible gene expression system with consistent control in all cells of a culture
-
Khlebnikov A., Risa Ø., Skaug T., Carrier T.A., Keasling J.D. Regulatable arabinose-inducible gene expression system with consistent control in all cells of a culture. J Bacteriol 2000, 182:7029-7034.
-
(2000)
J Bacteriol
, vol.182
, pp. 7029-7034
-
-
Khlebnikov, A.1
Risa, Ø.2
Skaug, T.3
Carrier, T.A.4
Keasling, J.D.5
-
77
-
-
33744955253
-
The regulatory roles of the galactose permease and kinase in the induction response of the GAL network in Saccharomyces cerevisiae
-
Hawkins K.M., Smolke C.D. The regulatory roles of the galactose permease and kinase in the induction response of the GAL network in Saccharomyces cerevisiae. J Biol Chem 2006, 281:13485-13492.
-
(2006)
J Biol Chem
, vol.281
, pp. 13485-13492
-
-
Hawkins, K.M.1
Smolke, C.D.2
-
78
-
-
63849203156
-
Positively regulated bacterial expression systems
-
Brautaset T., Lale R., Valla S. Positively regulated bacterial expression systems. Microb Biotechnol 2009, 2:15-30.
-
(2009)
Microb Biotechnol
, vol.2
, pp. 15-30
-
-
Brautaset, T.1
Lale, R.2
Valla, S.3
-
79
-
-
84890036078
-
Using optogenetics to interrogate the dynamic control of signal transmission by the Ras/Erk module
-
Toettcher J.E., Weiner O.D., Lim W.A. Using optogenetics to interrogate the dynamic control of signal transmission by the Ras/Erk module. Cell 2013, 155:1422-1434.
-
(2013)
Cell
, vol.155
, pp. 1422-1434
-
-
Toettcher, J.E.1
Weiner, O.D.2
Lim, W.A.3
-
80
-
-
36249017917
-
Programming gene expression with combinatorial promoters
-
Cox R.S., Surette M.G., Elowitz M.B. Programming gene expression with combinatorial promoters. Mol Syst Biol 2007, 3:145.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 145
-
-
Cox, R.S.1
Surette, M.G.2
Elowitz, M.B.3
-
81
-
-
78649866559
-
Comparison of different Bacillus subtilis expression systems
-
Vavrová L., Muchová K., Barák I. Comparison of different Bacillus subtilis expression systems. Res Microbiol 2010, 161:791-797.
-
(2010)
Res Microbiol
, vol.161
, pp. 791-797
-
-
Vavrová, L.1
Muchová, K.2
Barák, I.3
-
82
-
-
85027954689
-
The synthetic biology toolbox for tuning gene expression in yeast
-
Redden H., Morse N., Alper H.S. The synthetic biology toolbox for tuning gene expression in yeast. FEMS Yeast Res 2014, 10.1111/1567-1364.12188.
-
(2014)
FEMS Yeast Res
-
-
Redden, H.1
Morse, N.2
Alper, H.S.3
-
83
-
-
0030861452
-
Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements
-
Lutz R., Bujard H. Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements. Nucleic Acids Res 1997, 25:1203-1210.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 1203-1210
-
-
Lutz, R.1
Bujard, H.2
-
84
-
-
0020649604
-
The tac promoter: a functional hybrid derived from the trp and lac promoters
-
de Boer H.A., Comstock L.J., Vasser M. The tac promoter: a functional hybrid derived from the trp and lac promoters. Proc Natl Acad Sci USA 1983, 80:21-25.
-
(1983)
Proc Natl Acad Sci USA
, vol.80
, pp. 21-25
-
-
de Boer, H.A.1
Comstock, L.J.2
Vasser, M.3
-
86
-
-
58549105950
-
Design and signaling mechanism of light-regulated histidine kinases
-
Möglich A., Ayers R.A., Moffat K. Design and signaling mechanism of light-regulated histidine kinases. J Mol Biol 2009, 385:1433-1444.
-
(2009)
J Mol Biol
, vol.385
, pp. 1433-1444
-
-
Möglich, A.1
Ayers, R.A.2
Moffat, K.3
-
87
-
-
84857371657
-
From dusk till dawn: one-plasmid systems for light-regulated gene expression
-
Ohlendorf R., Vidavski R.R., Eldar A., Moffat K., Möglich A. From dusk till dawn: one-plasmid systems for light-regulated gene expression. J Mol Biol 2012, 416:534-542.
-
(2012)
J Mol Biol
, vol.416
, pp. 534-542
-
-
Ohlendorf, R.1
Vidavski, R.R.2
Eldar, A.3
Moffat, K.4
Möglich, A.5
-
88
-
-
78650896342
-
Multichromatic control of gene expression in Escherichia coli
-
Tabor J.J., Levskaya A., Voigt C.A. Multichromatic control of gene expression in Escherichia coli. J Mol Biol 2011, 405:315-324.
-
(2011)
J Mol Biol
, vol.405
, pp. 315-324
-
-
Tabor, J.J.1
Levskaya, A.2
Voigt, C.A.3
-
89
-
-
28544442417
-
Synthetic biology: engineering Escherichia coli to see light
-
Levskaya A., Chevalier A.A., Tabor J.J., Simpson Z.B., Lavery L.A., Levy M., Davidson E.A., Scouras A., Ellington A.D., Marcotte E.M., et al. Synthetic biology: engineering Escherichia coli to see light. Nature 2005, 438:441-442.
-
(2005)
Nature
, vol.438
, pp. 441-442
-
-
Levskaya, A.1
Chevalier, A.A.2
Tabor, J.J.3
Simpson, Z.B.4
Lavery, L.A.5
Levy, M.6
Davidson, E.A.7
Scouras, A.8
Ellington, A.D.9
Marcotte, E.M.10
-
90
-
-
67549145283
-
A synthetic genetic edge detection program
-
Tabor J.J., Salis H.M., Simpson Z.B., Chevalier A.A., Levskaya A., Marcotte E.M., Voigt C.A., Ellington A.D. A synthetic genetic edge detection program. Cell 2009, 137:1272-1281.
-
(2009)
Cell
, vol.137
, pp. 1272-1281
-
-
Tabor, J.J.1
Salis, H.M.2
Simpson, Z.B.3
Chevalier, A.A.4
Levskaya, A.5
Marcotte, E.M.6
Voigt, C.A.7
Ellington, A.D.8
-
91
-
-
84904314045
-
Near-infrared light responsive synthetic c-di-GMP module for optogenetic applications
-
Ryu M.-H., Gomelsky M. Near-infrared light responsive synthetic c-di-GMP module for optogenetic applications. ACS Synth Biol 2014, 10.1021/sb400182x.
-
(2014)
ACS Synth Biol
-
-
Ryu, M.-H.1
Gomelsky, M.2
-
92
-
-
84912094821
-
Refactoring and optimization of light-switchable Escherichia coli two-component systems
-
Schmidl S.R., Sheth R.U., Wu A., Tabor J.J. Refactoring and optimization of light-switchable Escherichia coli two-component systems. ACS Synth Biol 2014, 3:820-831.
-
(2014)
ACS Synth Biol
, vol.3
, pp. 820-831
-
-
Schmidl, S.R.1
Sheth, R.U.2
Wu, A.3
Tabor, J.J.4
-
93
-
-
79953272725
-
Perception of UV-B by the Arabidopsis UVR8 protein
-
Rizzini L., Favory J.-J., Cloix C., Faggionato D., O'Hara A., Kaiserli E., Baumeister R., Schäfer E., Nagy F., Jenkins G.I., et al. Perception of UV-B by the Arabidopsis UVR8 protein. Science 2011, 332:103-106.
-
(2011)
Science
, vol.332
, pp. 103-106
-
-
Rizzini, L.1
Favory, J.-J.2
Cloix, C.3
Faggionato, D.4
O'Hara, A.5
Kaiserli, E.6
Baumeister, R.7
Schäfer, E.8
Nagy, F.9
Jenkins, G.I.10
-
94
-
-
84912097893
-
Benchmarking of optical dimerizer systems
-
Pathak G.P., Strickland D., Vrana J.D., Tucker C.L. Benchmarking of optical dimerizer systems. ACS Synth Biol 2014, 3:832-838.
-
(2014)
ACS Synth Biol
, vol.3
, pp. 832-838
-
-
Pathak, G.P.1
Strickland, D.2
Vrana, J.D.3
Tucker, C.L.4
-
95
-
-
78649714869
-
Rapid blue-light-mediated induction of protein interactions in living cells
-
Kennedy M.J., Hughes R.M., Peteya L.A., Schwartz J.W., Ehlers M.D., Tucker C.L. Rapid blue-light-mediated induction of protein interactions in living cells. Nat. Methods 2010, 7:973-975.
-
(2010)
Nat. Methods
, vol.7
, pp. 973-975
-
-
Kennedy, M.J.1
Hughes, R.M.2
Peteya, L.A.3
Schwartz, J.W.4
Ehlers, M.D.5
Tucker, C.L.6
-
96
-
-
0036789439
-
A light-switchable gene promoter system
-
Shimizu-Sato S., Huq E., Tepperman J.M., Quail P.H. A light-switchable gene promoter system. Nat Biotechnol 2002, 20:1041-1044.
-
(2002)
Nat Biotechnol
, vol.20
, pp. 1041-1044
-
-
Shimizu-Sato, S.1
Huq, E.2
Tepperman, J.M.3
Quail, P.H.4
-
97
-
-
84899585805
-
A green-light inducible lytic system for cyanobacterial cells
-
Miyake K., Abe K., Ferri S., Nakajima M., Nakamura M., Yoshida W., Kojima K., Ikebukuro K., Sode K. A green-light inducible lytic system for cyanobacterial cells. Biotechnol Biofuels 2014, 7:56.
-
(2014)
Biotechnol Biofuels
, vol.7
, pp. 56
-
-
Miyake, K.1
Abe, K.2
Ferri, S.3
Nakajima, M.4
Nakamura, M.5
Yoshida, W.6
Kojima, K.7
Ikebukuro, K.8
Sode, K.9
-
98
-
-
84883190708
-
Light-inducible system for tunable protein expression in Neurospora crassa
-
Hurley J.M., Chen C.-H., Loros J.J., Dunlap J.C. Light-inducible system for tunable protein expression in Neurospora crassa. G3 (Bethesda) 2012, 2:1207-1212.
-
(2012)
G3 (Bethesda)
, vol.2
, pp. 1207-1212
-
-
Hurley, J.M.1
Chen, C.-H.2
Loros, J.J.3
Dunlap, J.C.4
-
99
-
-
84876461247
-
A LOV2 domain-based optogenetic tool to control protein degradation and cellular function
-
Renicke C., Schuster D., Usherenko S., Essen L.-O., Taxis C. A LOV2 domain-based optogenetic tool to control protein degradation and cellular function. Chem Biol 2013, 20:619-626.
-
(2013)
Chem Biol
, vol.20
, pp. 619-626
-
-
Renicke, C.1
Schuster, D.2
Usherenko, S.3
Essen, L.-O.4
Taxis, C.5
-
100
-
-
84922437179
-
Photo-sensitive degron variants for tuning protein stability by light
-
Usherenko S., Stibbe H., Muscò M., Essen L.-O., Kostina E.A., Taxis C. Photo-sensitive degron variants for tuning protein stability by light. BMC Syst Biol 2014, 8:128.
-
(2014)
BMC Syst Biol
, vol.8
, pp. 128
-
-
Usherenko, S.1
Stibbe, H.2
Muscò, M.3
Essen, L.-O.4
Kostina, E.A.5
Taxis, C.6
-
101
-
-
84904480201
-
Engineering light-inducible nuclear localization signals for precise spatiotemporal control of protein dynamics in living cells
-
Niopek D., Benzinger D., Roensch J., Draebing T., Wehler P., Eils R., Di Ventura B. Engineering light-inducible nuclear localization signals for precise spatiotemporal control of protein dynamics in living cells. Nat Commun 2014, 5:4404.
-
(2014)
Nat Commun
, vol.5
, pp. 4404
-
-
Niopek, D.1
Benzinger, D.2
Roensch, J.3
Draebing, T.4
Wehler, P.5
Eils, R.6
Di Ventura, B.7
-
102
-
-
84922684136
-
Upgrading a microplate reader for photobiology and all-optical experiments
-
Richter F., Scheib U.S., Mehlhorn J., Schubert R., Wietek J., Gernetzki O., Hegemann P., Mathes T., Möglich A. Upgrading a microplate reader for photobiology and all-optical experiments. Photochem Photobiol Sci 2014, 10.1039/c4pp00361f.
-
(2014)
Photochem Photobiol Sci
-
-
Richter, F.1
Scheib, U.S.2
Mehlhorn, J.3
Schubert, R.4
Wietek, J.5
Gernetzki, O.6
Hegemann, P.7
Mathes, T.8
Möglich, A.9
-
103
-
-
84886719115
-
Programming microbes using pulse width modulation of optical signals
-
Davidson E.A., Basu A.S., Bayer T.S. Programming microbes using pulse width modulation of optical signals. J Mol Biol 2013, 425:4161-4166.
-
(2013)
J Mol Biol
, vol.425
, pp. 4161-4166
-
-
Davidson, E.A.1
Basu, A.S.2
Bayer, T.S.3
-
104
-
-
84912126207
-
A low cost, customizable turbidostat for use in synthetic circuit characterization
-
Takahashi C.N., Miller A.W., Ekness F., Dunham M.J., Klavins E. A low cost, customizable turbidostat for use in synthetic circuit characterization. ACS Synth Biol 2014, 34:15-22.
-
(2014)
ACS Synth Biol
, vol.34
, pp. 15-22
-
-
Takahashi, C.N.1
Miller, A.W.2
Ekness, F.3
Dunham, M.J.4
Klavins, E.5
-
105
-
-
68949215494
-
Microfluidic devices for measuring gene network dynamics in single cells
-
Bennett M.R., Hasty J. Microfluidic devices for measuring gene network dynamics in single cells. Nat Rev Genet 2009, 10:628-638.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 628-638
-
-
Bennett, M.R.1
Hasty, J.2
-
106
-
-
84865285684
-
Microfluidic technologies for studying synthetic circuits
-
Lin B., Levchenko A. Microfluidic technologies for studying synthetic circuits. Curr Opin Chem Biol 2012, 16:307-317.
-
(2012)
Curr Opin Chem Biol
, vol.16
, pp. 307-317
-
-
Lin, B.1
Levchenko, A.2
-
107
-
-
84924253478
-
Design and implementation of a biomolecular concentration tracker
-
Hsiao V., de Los Santos E.L.C., Whitaker W.R., Dueber J.E., Murray R.M. Design and implementation of a biomolecular concentration tracker. ACS Synth Biol 2014, 10.1021/sb500024b.
-
(2014)
ACS Synth Biol
-
-
Hsiao, V.1
de Los Santos, E.L.C.2
Whitaker, W.R.3
Dueber, J.E.4
Murray, R.M.5
-
108
-
-
84919778720
-
Sequential feedback induction stabilizes the phosphate starvation response in budding yeast
-
Vardi N., Levy S., Gurvich Y., Polacheck T., Carmi M., Jaitin D., Amit I., Barkai N. Sequential feedback induction stabilizes the phosphate starvation response in budding yeast. Cell Rep 2014, 9:1122-1134.
-
(2014)
Cell Rep
, vol.9
, pp. 1122-1134
-
-
Vardi, N.1
Levy, S.2
Gurvich, Y.3
Polacheck, T.4
Carmi, M.5
Jaitin, D.6
Amit, I.7
Barkai, N.8
-
109
-
-
84865848723
-
A synthetic approach reveals extensive tunability of auxin signaling
-
Havens K.A., Guseman J.M., Jang S.S., Pierre-Jerome E., Bolten N., Klavins E., Nemhauser J.L. A synthetic approach reveals extensive tunability of auxin signaling. Plant Physiol 2012, 160:135-142.
-
(2012)
Plant Physiol
, vol.160
, pp. 135-142
-
-
Havens, K.A.1
Guseman, J.M.2
Jang, S.S.3
Pierre-Jerome, E.4
Bolten, N.5
Klavins, E.6
Nemhauser, J.L.7
-
110
-
-
84903287428
-
A microfluidic system for studying ageing and dynamic single-cell responses in budding yeast
-
Crane M.M., Clark I.B.N., Bakker E., Smith S., Swain P.S. A microfluidic system for studying ageing and dynamic single-cell responses in budding yeast. PLoS ONE 2014, 9:e100042.
-
(2014)
PLoS ONE
, vol.9
, pp. e100042
-
-
Crane, M.M.1
Clark, I.B.N.2
Bakker, E.3
Smith, S.4
Swain, P.S.5
-
111
-
-
0032518996
-
Nuclear localization of the C2H2 zinc finger protein Msn2p is regulated by stress and protein kinase A activity
-
Görner W., Durchschlag E., Martínez-Pastor M.T., Estruch F., Ammerer G., Hamilton B., Ruis H., Schüller C. Nuclear localization of the C2H2 zinc finger protein Msn2p is regulated by stress and protein kinase A activity. Genes Dev 1998, 12:586-597.
-
(1998)
Genes Dev
, vol.12
, pp. 586-597
-
-
Görner, W.1
Durchschlag, E.2
Martínez-Pastor, M.T.3
Estruch, F.4
Ammerer, G.5
Hamilton, B.6
Ruis, H.7
Schüller, C.8
-
112
-
-
34250155259
-
Nucleocytoplasmic oscillations of the yeast transcription factor Msn2: evidence for periodic PKA activation
-
Garmendia-Torres C., Goldbeter A., Jacquet M. Nucleocytoplasmic oscillations of the yeast transcription factor Msn2: evidence for periodic PKA activation. Curr Biol 2007, 17:1044-1049.
-
(2007)
Curr Biol
, vol.17
, pp. 1044-1049
-
-
Garmendia-Torres, C.1
Goldbeter, A.2
Jacquet, M.3
-
113
-
-
0029879360
-
The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress response element (STRE)
-
Martínez-Pastor M.T., Marchler G., Schüller C., Marchler-Bauer A., Ruis H., Estruch F. The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress response element (STRE). EMBO J 1996, 15:2227-2235.
-
(1996)
EMBO J
, vol.15
, pp. 2227-2235
-
-
Martínez-Pastor, M.T.1
Marchler, G.2
Schüller, C.3
Marchler-Bauer, A.4
Ruis, H.5
Estruch, F.6
-
114
-
-
52949098296
-
Frequency-modulated nuclear localization bursts coordinate gene regulation
-
Cai L., Dalal C.K., Elowitz M.B. Frequency-modulated nuclear localization bursts coordinate gene regulation. Nature 2008, 455:485-490.
-
(2008)
Nature
, vol.455
, pp. 485-490
-
-
Cai, L.1
Dalal, C.K.2
Elowitz, M.B.3
-
115
-
-
84896912620
-
Nucleocytoplasmic shuttling of a GATA transcription factor functions as a development timer
-
Cai H., Katoh-Kurasawa M., Muramoto T., Santhanam B., Long Y., Li L., Ueda M., Iglesias P.A., Shaulsky G., Devreotes P.N. Nucleocytoplasmic shuttling of a GATA transcription factor functions as a development timer. Science 2014, 343:1249531.
-
(2014)
Science
, vol.343
, pp. 1249531
-
-
Cai, H.1
Katoh-Kurasawa, M.2
Muramoto, T.3
Santhanam, B.4
Long, Y.5
Li, L.6
Ueda, M.7
Iglesias, P.A.8
Shaulsky, G.9
Devreotes, P.N.10
-
116
-
-
84884640242
-
A chemostat array enables the spatio-temporal analysis of the yeast proteome
-
Dénervaud N., Becker J., Delgado-Gonzalo R., Damay P., Rajkumar A.S., Unser M., Shore D., Naef F., Maerkl S.J. A chemostat array enables the spatio-temporal analysis of the yeast proteome. Proc Natl Acad Sci USA 2013, 110:15842-15847.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 15842-15847
-
-
Dénervaud, N.1
Becker, J.2
Delgado-Gonzalo, R.3
Damay, P.4
Rajkumar, A.S.5
Unser, M.6
Shore, D.7
Naef, F.8
Maerkl, S.J.9
-
117
-
-
84908150919
-
Pulsatile Dynamics in the Yeast Proteome
-
Dalal C.K., Cai L., Lin Y., Rahbar K., Elowitz M.B. Pulsatile Dynamics in the Yeast Proteome. Curr. Biol. 2014, 10.1016/j.cub.2014.07.076.
-
(2014)
Curr. Biol.
-
-
Dalal, C.K.1
Cai, L.2
Lin, Y.3
Rahbar, K.4
Elowitz, M.B.5
-
118
-
-
70350070364
-
Spatiotemporal control of cell signalling using a light-switchable protein interaction
-
Levskaya A., Weiner O.D., Lim W.A., Voigt C.A. Spatiotemporal control of cell signalling using a light-switchable protein interaction. Nature 2009, 461:997-1001.
-
(2009)
Nature
, vol.461
, pp. 997-1001
-
-
Levskaya, A.1
Weiner, O.D.2
Lim, W.A.3
Voigt, C.A.4
-
119
-
-
80053347082
-
Light-based feedback for controlling intracellular signaling dynamics
-
Toettcher J.E., Gong D., Lim W.A., Weiner O.D. Light-based feedback for controlling intracellular signaling dynamics. Nat Methods 2011, 8:837-839.
-
(2011)
Nat Methods
, vol.8
, pp. 837-839
-
-
Toettcher, J.E.1
Gong, D.2
Lim, W.A.3
Weiner, O.D.4
-
120
-
-
84874687019
-
Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
-
Qi L.S., Larson M.H., Gilbert L.A., Doudna J.A., Weissman J.S., Arkin A.P., Lim W.A. Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell 2013, 152:1173-1183.
-
(2013)
Cell
, vol.152
, pp. 1173-1183
-
-
Qi, L.S.1
Larson, M.H.2
Gilbert, L.A.3
Doudna, J.A.4
Weissman, J.S.5
Arkin, A.P.6
Lim, W.A.7
-
121
-
-
84880571335
-
CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes
-
Gilbert L.A., Larson M.H., Morsut L., Liu Z., Brar G.A., Torres S.E., Stern-Ginossar N., Brandman O., Whitehead E.H., Doudna J.A., et al. CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes. Cell 2013, 154:442-451.
-
(2013)
Cell
, vol.154
, pp. 442-451
-
-
Gilbert, L.A.1
Larson, M.H.2
Morsut, L.3
Liu, Z.4
Brar, G.A.5
Torres, S.E.6
Stern-Ginossar, N.7
Brandman, O.8
Whitehead, E.H.9
Doudna, J.A.10
-
122
-
-
84882986957
-
Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system
-
Bikard D., Jiang W., Samai P., Hochschild A., Zhang F., Marraffini L.A. Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system. Nucleic Acids Res 2013, 41:7429-7437.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 7429-7437
-
-
Bikard, D.1
Jiang, W.2
Samai, P.3
Hochschild, A.4
Zhang, F.5
Marraffini, L.A.6
-
123
-
-
84886488970
-
Tunable and multifunctional eukaryotic transcription factors based on CRISPR/Cas
-
Farzadfard F., Perli S.D., Lu T.K. Tunable and multifunctional eukaryotic transcription factors based on CRISPR/Cas. ACS Synth Biol 2013, 2:604-613.
-
(2013)
ACS Synth Biol
, vol.2
, pp. 604-613
-
-
Farzadfard, F.1
Perli, S.D.2
Lu, T.K.3
-
124
-
-
47749102135
-
Cyanobacteriochrome CcaS is the green light receptor that induces the expression of phycobilisome linker protein
-
Hirose Y., Shimada T., Narikawa R., Katayama M., Ikeuchi M. Cyanobacteriochrome CcaS is the green light receptor that induces the expression of phycobilisome linker protein. Proc Natl Acad Sci USA 2008, 105:9528-9533.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 9528-9533
-
-
Hirose, Y.1
Shimada, T.2
Narikawa, R.3
Katayama, M.4
Ikeuchi, M.5
-
125
-
-
84907551049
-
Hog1: 20 years of discovery and impact
-
Brewster J.L., Gustin M.C. Hog1: 20 years of discovery and impact. Sci Signal 2014, 7:re7.
-
(2014)
Sci Signal
, vol.7
, pp. re7
-
-
Brewster, J.L.1
Gustin, M.C.2
|