-
1
-
-
27944487902
-
Logic of the yeast metabolic cycle: Temporal compartmentalization of cellular processes
-
Tu, B. P., Kudlicki, A., Rowicka, M., and McKnight, S. L. (2005) Logic of the yeast metabolic cycle: Temporal compartmentalization of cellular processes. Science 310, 1152-1158.
-
(2005)
Science
, vol.310
, pp. 1152-1158
-
-
Tu, B.P.1
Kudlicki, A.2
Rowicka, M.3
McKnight, S.L.4
-
2
-
-
84893496903
-
Temporal control of self-organized pattern formation without morphogen gradients in bacteria
-
Payne, S., Li, B., Cao, Y., Schaeffer, D., Ryser, M. D., and You, L. (2013) Temporal control of self-organized pattern formation without morphogen gradients in bacteria. Mol. Syst. Biol. 9, 697.
-
(2013)
Mol. Syst. Biol.
, Issue.9
, pp. 697
-
-
Payne, S.1
Li, B.2
Cao, Y.3
Schaeffer, D.4
Ryser, M.D.5
You, L.6
-
3
-
-
84889256682
-
Functional roles of pulsing in genetic circuits
-
Levine, J. H., Lin, Y., and Elowitz, M. B. (2013) Functional roles of pulsing in genetic circuits. Science 342, 1193-1200.
-
(2013)
Science
, vol.342
, pp. 1193-1200
-
-
Levine, J.H.1
Lin, Y.2
Elowitz, M.B.3
-
4
-
-
84896912620
-
Nucleocytoplasmic shuttling of a GATA transcription factor functions as a development timer
-
Cai, H., Katoh-Kurasawa, M., Muramoto, T., Santhanam, B., Long, Y., Li, L., Ueda, M., Iglesias, P. A., Shaulsky, G., and Devreotes, P. N. (2014) Nucleocytoplasmic shuttling of a GATA transcription factor functions as a development timer. Science 343, 1249531.
-
(2014)
Science
, vol.343
, pp. 1249531
-
-
Cai, H.1
Katoh-Kurasawa, M.2
Muramoto, T.3
Santhanam, B.4
Long, Y.5
Li, L.6
Ueda, M.7
Iglesias, P.A.8
Shaulsky, G.9
Devreotes, P.N.10
-
5
-
-
84865283318
-
Post-translational tools expand the scope of synthetic biology
-
Olson, E. J., and Tabor, J. J. (2012) Post-translational tools expand the scope of synthetic biology. Curr. Opin. Chem. Biol. 16, 300-306.
-
(2012)
Curr. Opin. Chem. Biol.
, vol.16
, pp. 300-306
-
-
Olson, E.J.1
Tabor, J.J.2
-
6
-
-
84886456692
-
Tuning response curves for synthetic biology
-
Ang, J., Harris, E., Hussey, B. J., Kil, R., and McMillen, D. R. (2013) Tuning response curves for synthetic biology. ACS Synth. Biol. 2, 547-567.
-
(2013)
ACS Synth. Biol.
, vol.2
, pp. 547-567
-
-
Ang, J.1
Harris, E.2
Hussey, B.J.3
Kil, R.4
McMillen, D.R.5
-
7
-
-
0030861452
-
Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I 1-I2 regulatory elements
-
Lutz, R., and Bujard, H. (1997) Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I 1-I2 regulatory elements. Nucleic Acids Res. 25, 1203-1210.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 1203-1210
-
-
Lutz, R.1
Bujard, H.2
-
8
-
-
36148945188
-
Inducible product gene expression technology tailored to bioprocess engineering
-
Weber, W., and Fussenegger, M. (2007) Inducible product gene expression technology tailored to bioprocess engineering. Curr. Opin. Biotechnol. 18, 399-410.
-
(2007)
Curr. Opin. Biotechnol.
, vol.18
, pp. 399-410
-
-
Weber, W.1
Fussenegger, M.2
-
9
-
-
84875486247
-
Orthogonal control of endogenous gene expression in mammalian cells using synthetic ligands
-
Liang, J., McLachlan, M. J., and Zhao, H. (2013) Orthogonal control of endogenous gene expression in mammalian cells using synthetic ligands. Biotechnol. Bioeng. 110, 1419-1429.
-
(2013)
Biotechnol. Bioeng.
, vol.110
, pp. 1419-1429
-
-
Liang, J.1
McLachlan, M.J.2
Zhao, H.3
-
10
-
-
84901649750
-
In-vivo real-time control of protein expression from endogenous and synthetic gene networks
-
Menolascina, F., Fiore, G., Orabona, E., De Stefano, L., Ferry, M., Hasty, J., di Bernardo, M., and di Bernardo, D. (2014) In-vivo real-time control of protein expression from endogenous and synthetic gene networks. PLoS Comput. Biol. 10, e1003625.
-
(2014)
PLoS Comput. Biol.
, vol.10
, pp. e1003625
-
-
Menolascina, F.1
Fiore, G.2
Orabona, E.3
De Stefano, L.4
Ferry, M.5
Hasty, J.6
Di Bernardo, M.7
Di Bernardo, D.8
-
11
-
-
84921329361
-
A low cost, customizable turbidostat for use in synthetic circuit characterization
-
Takahashi, C. N., Miller, A. W., Ekness, F., Dunham, M. J., and Klavins, E. (2014) A low cost, customizable turbidostat for use in synthetic circuit characterization. ACS Synth. Biol., DOI: 10.1021/sb500165g.
-
(2014)
ACS Synth. Biol.
-
-
Takahashi, C.N.1
Miller, A.W.2
Ekness, F.3
Dunham, M.J.4
Klavins, E.5
-
12
-
-
37249038595
-
A comparative study examining the cytotoxicity of inducible gene expression system ligands in different cell types
-
Xie, J., Nair, A., and Hermiston, T. W. (2008) A comparative study examining the cytotoxicity of inducible gene expression system ligands in different cell types. Toxicol. In Vitro 22, 261-266.
-
(2008)
Toxicol. In Vitro
, vol.22
, pp. 261-266
-
-
Xie, J.1
Nair, A.2
Hermiston, T.W.3
-
13
-
-
84890036078
-
Using optogenetics to interrogate the dynamic control of signal transmission by the Ras/Erk module
-
Toettcher, J. E., Weiner, O. D., and Lim, W. A. (2013) Using optogenetics to interrogate the dynamic control of signal transmission by the Ras/Erk module. Cell 155, 1422-1434.
-
(2013)
Cell
, vol.155
, pp. 1422-1434
-
-
Toettcher, J.E.1
Weiner, O.D.2
Lim, W.A.3
-
14
-
-
84865536748
-
Long-term model predictive control of gene expression at the population and single-cell levels
-
Uhlendorf, J., Miermont, A., Delaveau, T., Charvin, G., Fages, F., Bottani, S., Batt, G., and Hersen, P. (2012) Long-term model predictive control of gene expression at the population and single-cell levels. Proc. Natl. Acad. Sci. U.S.A. 109, 14271-14276.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 14271-14276
-
-
Uhlendorf, J.1
Miermont, A.2
Delaveau, T.3
Charvin, G.4
Fages, F.5
Bottani, S.6
Batt, G.7
Hersen, P.8
-
15
-
-
84902823142
-
Optogenetic characterization methods overcome key challenges in synthetic and systems biology
-
Olson, E. J., and Tabor, J. J. (2014) Optogenetic characterization methods overcome key challenges in synthetic and systems biology. Nat. Chem. Biol. 10, 502-511.
-
(2014)
Nat. Chem. Biol.
, vol.10
, pp. 502-511
-
-
Olson, E.J.1
Tabor, J.J.2
-
16
-
-
78650902662
-
Optogenetics
-
Deisseroth, K. (2011) Optogenetics. Nat. Methods 8, 26-29.
-
(2011)
Nat. Methods
, vol.8
, pp. 26-29
-
-
Deisseroth, K.1
-
17
-
-
28544442417
-
Synthetic biology: Engineering Escherichia coli to see light
-
Levskaya, A., Chevalier, A. A., Tabor, J. J., Simpson, Z. B., Lavery, L. A., Levy, M., Davidson, E. A., Scouras, A., Ellington, A. D., Marcotte, E. M., and Voigt, C. A. (2005) Synthetic biology: Engineering Escherichia coli to see light. Nature 438, 441-442.
-
(2005)
Nature
, vol.438
, pp. 441-442
-
-
Levskaya, A.1
Chevalier, A.A.2
Tabor, J.J.3
Simpson, Z.B.4
Lavery, L.A.5
Levy, M.6
Davidson, E.A.7
Scouras, A.8
Ellington, A.D.9
Marcotte, E.M.10
Voigt, C.A.11
-
18
-
-
34548546911
-
Structural basis for light-dependent signaling in the dimeric LOV domain of the photosensor YtvA
-
Möglich, A., and Moffat, K. (2007) Structural basis for light-dependent signaling in the dimeric LOV domain of the photosensor YtvA. J. Mol. Biol. 373, 112-126.
-
(2007)
J. Mol. Biol.
, vol.373
, pp. 112-126
-
-
Möglich, A.1
Moffat, K.2
-
19
-
-
78650896342
-
Multichromatic control of gene expression in Escherichia coli
-
Tabor, J. J., Levskaya, A., and Voigt, C. A. (2011) Multichromatic control of gene expression in Escherichia coli. J. Mol. Biol. 405, 315-324.
-
(2011)
J. Mol. Biol.
, vol.405
, pp. 315-324
-
-
Tabor, J.J.1
Levskaya, A.2
Voigt, C.A.3
-
20
-
-
84904314045
-
Near-infrared light responsive synthetic c-di-GMP module for optogenetic applications
-
Ryu, M. H., and Gomelsky, M. (2014) Near-infrared light responsive synthetic c-di-GMP module for optogenetic applications. ACS Synth. Biol., DOI: 10.1021/sb400182x.
-
(2014)
ACS Synth. Biol.
-
-
Ryu, M.H.1
Gomelsky, M.2
-
21
-
-
84893904897
-
Engineering of a green-light inducible gene expression system in Synechocystis sp. PCC6803
-
Abe, K., Miyake, K., Nakamura, M., Kojima, K., Ferri, S., Ikebukuro, K., and Sode, K. (2014) Engineering of a green-light inducible gene expression system in Synechocystis sp. PCC6803. Microb. Biotechnol. 7, 177-183.
-
(2014)
Microb. Biotechnol.
, vol.7
, pp. 177-183
-
-
Abe, K.1
Miyake, K.2
Nakamura, M.3
Kojima, K.4
Ferri, S.5
Ikebukuro, K.6
Sode, K.7
-
22
-
-
0036789439
-
A light-switchable gene promoter system
-
Shimizu-Sato, S., Huq, E., Tepperman, J. M., and Quail, P. H. (2002) A light-switchable gene promoter system. Nat. Biotechnol. 20, 1041-1044.
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 1041-1044
-
-
Shimizu-Sato, S.1
Huq, E.2
Tepperman, J.M.3
Quail, P.H.4
-
23
-
-
78649714869
-
Rapid blue-light-mediated induction of protein interactions in living cells
-
Kennedy, M. J., Hughes, R. M., Peteya, L. A., Schwartz, J. W., Ehlers, M. D., and Tucker, C. L. (2010) Rapid blue-light-mediated induction of protein interactions in living cells. Nat. Methods 7, 973-975.
-
(2010)
Nat. Methods
, vol.7
, pp. 973-975
-
-
Kennedy, M.J.1
Hughes, R.M.2
Peteya, L.A.3
Schwartz, J.W.4
Ehlers, M.D.5
Tucker, C.L.6
-
24
-
-
83255165732
-
In silico feedback for in vivo regulation of a gene expression circuit
-
Milias-Argeitis, A., Summers, S., Stewart-Ornstein, J., Zuleta, I., Pincus, D., El-Samad, H., Khammash, M., and Lygeros, J. (2011) In silico feedback for in vivo regulation of a gene expression circuit. Nat. Biotechnol. 29, 1114-1116.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 1114-1116
-
-
Milias-Argeitis, A.1
Summers, S.2
Stewart-Ornstein, J.3
Zuleta, I.4
Pincus, D.5
El-Samad, H.6
Khammash, M.7
Lygeros, J.8
-
25
-
-
70349967637
-
Induction of protein-protein interactions in live cells using light
-
Yazawa, M., Sadaghiani, A. M., Hsueh, B., and Dolmetsch, R. E. (2009) Induction of protein-protein interactions in live cells using light. Nat. Biotechnol. 27, 941-945.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 941-945
-
-
Yazawa, M.1
Sadaghiani, A.M.2
Hsueh, B.3
Dolmetsch, R.E.4
-
26
-
-
79959514813
-
A synthetic optogenetic transcription device enhances blood-glucose homeostasis in mice
-
Ye, H., Daoud-El Baba, M., Peng, R. W., and Fussenegger, M. (2011) A synthetic optogenetic transcription device enhances blood-glucose homeostasis in mice. Science 332, 1565-1568.
-
(2011)
Science
, vol.332
, pp. 1565-1568
-
-
Ye, H.1
Daoud-El Baba, M.2
Peng, R.W.3
Fussenegger, M.4
-
27
-
-
84867370333
-
Light-inducible spatiotemporal control of gene activation by customizable zinc finger transcription factors
-
Polstein, L. R., and Gersbach, C. A. (2012) Light-inducible spatiotemporal control of gene activation by customizable zinc finger transcription factors. J. Am. Chem. Soc. 134, 16480-16483.
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 16480-16483
-
-
Polstein, L.R.1
Gersbach, C.A.2
-
28
-
-
84876520276
-
A red/far-red light-responsive bi-stable toggle switch to control gene expression in mammalian cells
-
Müller, K., Engesser, R., Metzger, S., Schulz, S., Kämpf, M. M., Busacker, M., Steinberg, T., Tomakidi, P., Ehrbar, M., Nagy, F., Timmer, J., Zubriggen, M. D., and Weber, W. (2013) A red/far-red light-responsive bi-stable toggle switch to control gene expression in mammalian cells. Nucleic Acids Res. 41, e77.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. e77
-
-
Müller, K.1
Engesser, R.2
Metzger, S.3
Schulz, S.4
Kämpf, M.M.5
Busacker, M.6
Steinberg, T.7
Tomakidi, P.8
Ehrbar, M.9
Nagy, F.10
Timmer, J.11
Zubriggen, M.D.12
Weber, W.13
-
29
-
-
84880247596
-
Multi-chromatic control of mammalian gene expression and signaling
-
Müller, K., Engesser, R., Schulz, S., Steinberg, T., Tomakidi, P., Weber, C. C., Ulm, R., Timmer, J., Zurbriggen, M. D., and Weber, W. (2013) Multi-chromatic control of mammalian gene expression and signaling. Nucleic Acids Res. 41, e124.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. e124
-
-
Müller, K.1
Engesser, R.2
Schulz, S.3
Steinberg, T.4
Tomakidi, P.5
Weber, C.C.6
Ulm, R.7
Timmer, J.8
Zurbriggen, M.D.9
Weber, W.10
-
30
-
-
84877783598
-
Ultraviolet-B-mediated induction of protein-protein interactions in mammalian cells
-
Crefcoeur, R. P., Yin, R., Ulm, R., and Halazonetis, T. D. (2013) Ultraviolet-B-mediated induction of protein-protein interactions in mammalian cells. Nat. Commun. 4, 1779.
-
(2013)
Nat. Commun.
, vol.4
, pp. 1779
-
-
Crefcoeur, R.P.1
Yin, R.2
Ulm, R.3
Halazonetis, T.D.4
-
31
-
-
84883212789
-
Light-inducible activation of target mRNA translation in mammalian cells
-
Cao, J., Arha, M., Sudrik, C., Bugaj, L. J., Schaffer, D. V., and Kane, R. S. (2013) Light-inducible activation of target mRNA translation in mammalian cells. Chem. Commun. (Camb). 49, 8338-8340.
-
(2013)
Chem. Commun. (Camb).
, vol.49
, pp. 8338-8340
-
-
Cao, J.1
Arha, M.2
Sudrik, C.3
Bugaj, L.J.4
Schaffer, D.V.5
Kane, R.S.6
-
32
-
-
84894057197
-
An optogenetic gene expression system with rapid activation and deactivation kinetics
-
Motta-Mena, L. B., Reade, A., Mallory, M. J., Glantz, S., Weiner, O. D., Lynch, K. W., and Gardner, K. H. (2014) An optogenetic gene expression system with rapid activation and deactivation kinetics. Nat. Chem. Biol. 10, 196-202.
-
(2014)
Nat. Chem. Biol.
, vol.10
, pp. 196-202
-
-
Motta-Mena, L.B.1
Reade, A.2
Mallory, M.J.3
Glantz, S.4
Weiner, O.D.5
Lynch, K.W.6
Gardner, K.H.7
-
33
-
-
84870581134
-
Optogenetic control of transcription in zebrafish
-
Liu, H., Gomez, G., Lin, S., Lin, S., and Lin, C. (2012) Optogenetic control of transcription in zebrafish. PLoS One 7, e50738.
-
(2012)
PLoS One
, vol.7
, pp. e50738
-
-
Liu, H.1
Gomez, G.2
Lin, S.3
Lin, S.4
Lin, C.5
-
34
-
-
84862776564
-
Spatiotemporal control of gene expression by a light-switchable transgene system
-
Wang, X., Chen, X., and Yang, Y. (2012) Spatiotemporal control of gene expression by a light-switchable transgene system. Nat. Methods 9, 266-269.
-
(2012)
Nat. Methods
, vol.9
, pp. 266-269
-
-
Wang, X.1
Chen, X.2
Yang, Y.3
-
35
-
-
84882976110
-
Optical control of mammalian endogenous transcription and epigenetic states
-
Konermann, S., Brigham, M. D., Trevino, A. E., Hsu, P. D., Heidenreich, M., Cong, L., Platt, R. J., Scott, D. A., Church, G. M., and Zhang, F. (2013) Optical control of mammalian endogenous transcription and epigenetic states. Nature 500, 472-476.
-
(2013)
Nature
, vol.500
, pp. 472-476
-
-
Konermann, S.1
Brigham, M.D.2
Trevino, A.E.3
Hsu, P.D.4
Heidenreich, M.5
Cong, L.6
Platt, R.J.7
Scott, D.A.8
Church, G.M.9
Zhang, F.10
-
36
-
-
84872664011
-
Optogenetic control of cell function using engineered photoreceptors
-
Pathak, G. P., Vrana, J. D., and Tucker, C. L. (2013) Optogenetic control of cell function using engineered photoreceptors. Biol. Cell. 105, 59-72.
-
(2013)
Biol. Cell.
, vol.105
, pp. 59-72
-
-
Pathak, G.P.1
Vrana, J.D.2
Tucker, C.L.3
-
37
-
-
78650865624
-
The promise of optogenetics in cell biology: Interrogating molecular circuits in space and time
-
Toettcher, J. E., Voigt, C. A., Weiner, O. D., and Lim, W. A. (2011) The promise of optogenetics in cell biology: Interrogating molecular circuits in space and time. Nat. Methods 8, 35-38.
-
(2011)
Nat. Methods
, vol.8
, pp. 35-38
-
-
Toettcher, J.E.1
Voigt, C.A.2
Weiner, O.D.3
Lim, W.A.4
-
38
-
-
84902771399
-
How to control proteins with light in living systems
-
Gautier, A., Gauron, C., Volovitch, M., Bensimon, D., Jullien, L., and Vriz, S. (2014) How to control proteins with light in living systems. Nat. Chem. Biol. 10, 533-541.
-
(2014)
Nat. Chem. Biol.
, vol.10
, pp. 533-541
-
-
Gautier, A.1
Gauron, C.2
Volovitch, M.3
Bensimon, D.4
Jullien, L.5
Vriz, S.6
-
39
-
-
0035845489
-
Genetic engineering of phytochrome biosynthesis in bacteria
-
Gambetta, G. A., and Lagarias, J. C. (2001) Genetic engineering of phytochrome biosynthesis in bacteria. Proc. Natl. Acad. Sci. U.S.A. 98, 10566-10571.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 10566-10571
-
-
Gambetta, G.A.1
Lagarias, J.C.2
-
40
-
-
84897954571
-
Characterizing bacterial gene circuit dynamics with optically programmed gene expression signals
-
Olson, E. J., Hartsough, L. A., Landry, B. P., Shroff, R., and Tabor, J. J. (2014) Characterizing bacterial gene circuit dynamics with optically programmed gene expression signals. Nat. Methods 11, 449-455.
-
(2014)
Nat. Methods
, vol.11
, pp. 449-455
-
-
Olson, E.J.1
Hartsough, L.A.2
Landry, B.P.3
Shroff, R.4
Tabor, J.J.5
-
41
-
-
0024462539
-
Activation of bacterial porin gene expression by a chimeric signal transducer in response to aspartate
-
Utsumi, R., Brissette, R. E., Rampersaud, A., Forst, S. A., Oosawa, K., and Inouye, M. (1989) Activation of bacterial porin gene expression by a chimeric signal transducer in response to aspartate. Science 245, 1246-1249.
-
(1989)
Science
, vol.245
, pp. 1246-1249
-
-
Utsumi, R.1
Brissette, R.E.2
Rampersaud, A.3
Forst, S.A.4
Oosawa, K.5
Inouye, M.6
-
42
-
-
47749102135
-
Cyanobacteriochrome CcaS is the green light receptor that induces the expression of phycobilisome linker protein
-
Hirose, Y., Shimada, T., Narikawa, R., Katayama, M., and Ikeuchi, M. (2008) Cyanobacteriochrome CcaS is the green light receptor that induces the expression of phycobilisome linker protein. Proc. Natl. Acad. Sci. U.S.A. 105, 9528-9533.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 9528-9533
-
-
Hirose, Y.1
Shimada, T.2
Narikawa, R.3
Katayama, M.4
Ikeuchi, M.5
-
43
-
-
77952692064
-
Cyanobacteriochrome CcaS regulates phycoerythrin accumulation in Nostoc punctiforme, a group II chromatic adapter
-
Hirose, Y., Narikawa, R., Katayama, M., and Ikeuchi, M. (2010) Cyanobacteriochrome CcaS regulates phycoerythrin accumulation in Nostoc punctiforme, a group II chromatic adapter. Proc. Natl. Acad. Sci. U.S.A. 107, 8854-8859.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 8854-8859
-
-
Hirose, Y.1
Narikawa, R.2
Katayama, M.3
Ikeuchi, M.4
-
44
-
-
67549145283
-
A synthetic genetic edge detection program
-
Tabor, J. J., Salis, H. M., Simpson, Z. B., Chevalier, A. A., Levskaya, A., Marcotte, E. M., Voigt, C. A., and Ellington, A. D. (2009) A synthetic genetic edge detection program. Cell 137, 1272-1281.
-
(2009)
Cell
, vol.137
, pp. 1272-1281
-
-
Tabor, J.J.1
Salis, H.M.2
Simpson, Z.B.3
Chevalier, A.A.4
Levskaya, A.5
Marcotte, E.M.6
Voigt, C.A.7
Ellington, A.D.8
-
45
-
-
84886719115
-
Programming microbes using pulse width modulation of optical signals
-
Davidson, E. A., Basu, A. S., and Bayer, T. S. (2013) Programming microbes using pulse width modulation of optical signals. J. Mol. Biol. 425, 4161-4166.
-
(2013)
J. Mol. Biol.
, vol.425
, pp. 4161-4166
-
-
Davidson, E.A.1
Basu, A.S.2
Bayer, T.S.3
-
46
-
-
28544433105
-
Refactoring bacteriophage T7
-
Chan, L. Y., Kosuri, S., and Endy, D. (2005) Refactoring bacteriophage T7. Mol. Syst. Biol. 1, 2005.0018.
-
(2005)
Mol. Syst. Biol.
, vol.1
, pp. 2005.0018
-
-
Chan, L.Y.1
Kosuri, S.2
Endy, D.3
-
47
-
-
84860803588
-
Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca
-
Temme, K., Zhao, D., and Voigt, C. A. (2012) Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca. Proc. Natl. Acad. Sci. U.S.A. 109, 7085-7090.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 7085-7090
-
-
Temme, K.1
Zhao, D.2
Voigt, C.A.3
-
48
-
-
84912101210
-
-
Part: BBa-J23106. accessed, January 6, 2014
-
Anderson, J. C. (2006) Registry of Standard Biological Parts. Part: BBa-J23106. http://parts.igem.org/Part:BBa-J23106 (accessed, January 6, 2014).
-
(2006)
Registry of Standard Biological Parts
-
-
Anderson, J.C.1
-
49
-
-
70349964350
-
Automated design of synthetic ribosome binding sites to control protein expression
-
Salis, H. M., Mirsky, E. A., and Voigt, C. A. (2009) Automated design of synthetic ribosome binding sites to control protein expression. Nat. Biotechnol. 27, 946-950.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 946-950
-
-
Salis, H.M.1
Mirsky, E.A.2
Voigt, C.A.3
-
50
-
-
79957534528
-
The ribosome binding site calculator
-
Salis, H. M. (2011) The ribosome binding site calculator. Methods Enzymol. 498, 19-42.
-
(2011)
Methods Enzymol.
, vol.498
, pp. 19-42
-
-
Salis, H.M.1
-
51
-
-
0032739281
-
C-terminal DNA binding stimulates N-terminal phosphorylation of the outer membrane protein regulator OmpR from Escherichia coli
-
Ames, S. K., Frankema, N., and Kenney, L. J. (1999) C-terminal DNA binding stimulates N-terminal phosphorylation of the outer membrane protein regulator OmpR from Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 96, 11792-11797.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 11792-11797
-
-
Ames, S.K.1
Frankema, N.2
Kenney, L.J.3
-
52
-
-
0024061466
-
Crosstalk between bacterial chemotaxis signal transduction proteins and regulators of transcription of the Ntr regulon: Evidence that nitrogen assimilation and chemotaxis are controlled by a common phosphotransfer mechanism
-
Ninfa, A. J., Ninfa, E. G., Lupas, A. N., Stock, A., Magasanik, B., and Stock, J. (1988) Crosstalk between bacterial chemotaxis signal transduction proteins and regulators of transcription of the Ntr regulon: Evidence that nitrogen assimilation and chemotaxis are controlled by a common phosphotransfer mechanism. Proc. Natl. Acad. Sci. U.S.A. 85, 5492-5496.
-
(1988)
Proc. Natl. Acad. Sci. U.S.A.
, vol.85
, pp. 5492-5496
-
-
Ninfa, A.J.1
Ninfa, E.G.2
Lupas, A.N.3
Stock, A.4
Magasanik, B.5
Stock, J.6
-
53
-
-
67449095110
-
Kinetic buffering of cross talk between bacterial two-component sensors
-
Groban, E. S., Clarke, E. J., Salis, H. M., Miller, S. M., and Voigt, C. A. (2009) Kinetic buffering of cross talk between bacterial two-component sensors. J. Mol. Biol. 390, 380-393.
-
(2009)
J. Mol. Biol.
, vol.390
, pp. 380-393
-
-
Groban, E.S.1
Clarke, E.J.2
Salis, H.M.3
Miller, S.M.4
Voigt, C.A.5
-
54
-
-
12544258487
-
Functional characterization in vitro of all two-component signal transduction systems from Escherichia coli
-
Yamamoto, K., Hirao, K., Oshima, T., Aiba, H., Utsumi, R., and Ishihama, A. (2005) Functional characterization in vitro of all two-component signal transduction systems from Escherichia coli. J. Biol. Chem. 280, 1448-1456.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 1448-1456
-
-
Yamamoto, K.1
Hirao, K.2
Oshima, T.3
Aiba, H.4
Utsumi, R.5
Ishihama, A.6
-
55
-
-
0022383830
-
Primary characterization of the protein products of the Escherichia coli ompB locus: Structure and regulation of synthesis of the OmpR and EnvZ proteins
-
Comeau, D. E., Ikenaka, K., Tsung, K. L., and Inouye, M. (1985) Primary characterization of the protein products of the Escherichia coli ompB locus: Structure and regulation of synthesis of the OmpR and EnvZ proteins. J. Bacteriol. 164, 578-584.
-
(1985)
J. Bacteriol.
, vol.164
, pp. 578-584
-
-
Comeau, D.E.1
Ikenaka, K.2
Tsung, K.L.3
Inouye, M.4
-
56
-
-
0026567023
-
Positive and negative control of ompB transcription in Escherichia coli by cyclic AMP and the cyclic AMP receptor protein
-
Huang, L., Tsui, P., and Freundlich, M. (1992) Positive and negative control of ompB transcription in Escherichia coli by cyclic AMP and the cyclic AMP receptor protein. J. Bacteriol. 174, 664-670.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 664-670
-
-
Huang, L.1
Tsui, P.2
Freundlich, M.3
-
57
-
-
0043032929
-
Phenotype microarray analysis of Escherichia coli K-12 mutants with deletions of all two-component systems
-
Zhou, L., Lei, X. H., Bochner, B. R., and Wanner, B. L. (2003) Phenotype microarray analysis of Escherichia coli K-12 mutants with deletions of all two-component systems. J. Bacteriol. 185, 4956-4972.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 4956-4972
-
-
Zhou, L.1
Lei, X.H.2
Bochner, B.R.3
Wanner, B.L.4
-
58
-
-
84874687019
-
Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
-
Qi, L. S., Larson, M. H., Gilbert, L. A., Doudna, J. A., Weissman, J. S., Arkin, A. P., and Lim, W. A. (2013) Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell 152, 1173-1183.
-
(2013)
Cell
, vol.152
, pp. 1173-1183
-
-
Qi, L.S.1
Larson, M.H.2
Gilbert, L.A.3
Doudna, J.A.4
Weissman, J.S.5
Arkin, A.P.6
Lim, W.A.7
-
59
-
-
0037168510
-
Directed evolution of a genetic circuit
-
Yokobayashi, Y., Weiss, R., and Arnold, F. H. (2002) Directed evolution of a genetic circuit. Proc. Natl. Acad. Sci. U.S.A. 99, 16587-16591.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 16587-16591
-
-
Yokobayashi, Y.1
Weiss, R.2
Arnold, F.H.3
-
60
-
-
44649153450
-
Rewiring the specificity of two-component signal transduction systems
-
Skerker, J. M., Perchuk, B. S., Siryaporn, A., Lubin, E. A., Ashenberg, O., Goulian, M., and Laub, M. T. (2008) Rewiring the specificity of two-component signal transduction systems. Cell 133, 1043-1054.
-
(2008)
Cell
, vol.133
, pp. 1043-1054
-
-
Skerker, J.M.1
Perchuk, B.S.2
Siryaporn, A.3
Lubin, E.A.4
Ashenberg, O.5
Goulian, M.6
Laub, M.T.7
-
61
-
-
67651219110
-
Engineering bacterial signals and sensors
-
Salis, H., Tamsir, A., and Voigt, C. (2009) Engineering bacterial signals and sensors. Contrib. Microbiol. 16, 194-225.
-
(2009)
Contrib. Microbiol.
, vol.16
, pp. 194-225
-
-
Salis, H.1
Tamsir, A.2
Voigt, C.3
-
62
-
-
78650917277
-
Performance characteristics for sensors and circuits used to program E. Coli
-
Lee, S. Y., Ed., Springer: Netherlands, Dordrecht
-
Tabor, J. J., Groban, E. S., and Voigt, C. A. (2009) Performance characteristics for sensors and circuits used to program E. coli. In Systems Biology and Biotechnology of Escherichia coli (Lee, S. Y., Ed.), pp 401-439, Springer: Netherlands, Dordrecht.
-
(2009)
Systems Biology and Biotechnology of Escherichia Coli
, pp. 401-439
-
-
Tabor, J.J.1
Groban, E.S.2
Voigt, C.A.3
-
63
-
-
77949918369
-
Use of two-component signal transduction systems in the construction of synthetic genetic networks
-
Ninfa, A. J. (2010) Use of two-component signal transduction systems in the construction of synthetic genetic networks. Curr. Opin. Microbiol. 13, 240-245.
-
(2010)
Curr. Opin. Microbiol.
, vol.13
, pp. 240-245
-
-
Ninfa, A.J.1
-
64
-
-
84868087234
-
Engineering robust control of two-component system phosphotransfer using modular scaffolds
-
Whitaker, W. R., Davis, S. A., Arkin, A. P., and Dueber, J. E. (2012) Engineering robust control of two-component system phosphotransfer using modular scaffolds. Proc. Natl. Acad. Sci. U.S.A. 109, 18090-18095.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 18090-18095
-
-
Whitaker, W.R.1
Davis, S.A.2
Arkin, A.P.3
Dueber, J.E.4
-
65
-
-
84888822637
-
Engineered fumarate sensing Escherichia coli based on novel chimeric two-component system
-
Ganesh, I., Ravikumar, S., Lee, S. H., Park, S. J., and Hong, S. H. (2013) Engineered fumarate sensing Escherichia coli based on novel chimeric two-component system. J. Biotechnol. 168, 560-566.
-
(2013)
J. Biotechnol.
, vol.168
, pp. 560-566
-
-
Ganesh, I.1
Ravikumar, S.2
Lee, S.H.3
Park, S.J.4
Hong, S.H.5
-
66
-
-
84893476565
-
Toward rationally redesigning bacterial two-component signaling systems using coevolutionary information
-
Cheng, R. R., Morcos, F., Levine, H., and Onuchic, J. N. (2014) Toward rationally redesigning bacterial two-component signaling systems using coevolutionary information. Proc. Natl. Acad. Sci. U.S.A. 111, E563-E571.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. E563-E571
-
-
Cheng, R.R.1
Morcos, F.2
Levine, H.3
Onuchic, J.N.4
-
67
-
-
84908187157
-
Comparative Analysis of the primary transcriptome of Synechocystis sp. PCC 6803
-
Kopf, M., Klähn, S., Scholz, I., Matthiessen, J. K., Hess, W. R., and Voß, B. (2014) Comparative Analysis of the primary transcriptome of Synechocystis sp. PCC 6803. DNA Res., DOI: 10.1093/dnares/dsu018.
-
(2014)
DNA Res.
-
-
Kopf, M.1
Klähn, S.2
Scholz, I.3
Matthiessen, J.K.4
Hess, W.R.5
Voß, B.6
-
68
-
-
84895303487
-
Automatic annotation of microbial genomes and metagenomic sequences
-
Li, R. W., Ed., Nova Science Publishers, New York
-
Solovyev, V., and Salamov, A. (2011) Automatic annotation of microbial genomes and metagenomic sequences. In Metagenomics and Its Applications in Agriculture, Biomedicine, and Environmental Studies (Li, R. W., Ed.), pp 61-78, Nova Science Publishers, New York.
-
(2011)
Metagenomics and Its Applications in Agriculture, Biomedicine, and Environmental Studies
, pp. 61-78
-
-
Solovyev, V.1
Salamov, A.2
-
69
-
-
0037457896
-
Robustness and the cycle of phosphorylation and dephosphorylation in a two-component regulatory system
-
Batchelor, E., and Goulian, M. (2003) Robustness and the cycle of phosphorylation and dephosphorylation in a two-component regulatory system. Proc. Natl. Acad. Sci. U.S.A. 100, 691-696.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 691-696
-
-
Batchelor, E.1
Goulian, M.2
-
70
-
-
84872202837
-
Probing kinase and phosphatase activities of two-component systems in vivo with concentration-dependent phosphorylation profiling
-
Gao, R., and Stock, A. M. (2013) Probing kinase and phosphatase activities of two-component systems in vivo with concentration-dependent phosphorylation profiling. Proc. Natl. Acad. Sci. U.S.A. 110, 672-677.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 672-677
-
-
Gao, R.1
Stock, A.M.2
-
71
-
-
84879825754
-
A single phosphatase can convert a robust step response into a graded, tunable, or adaptive response
-
Chang, Y. C., Armitage, J. P., Papachristodoulou, A., and Wadhams, G. H. (2013) A single phosphatase can convert a robust step response into a graded, tunable, or adaptive response. Microbiology 159, 1276-1285.
-
(2013)
Microbiology
, vol.159
, pp. 1276-1285
-
-
Chang, Y.C.1
Armitage, J.P.2
Papachristodoulou, A.3
Wadhams, G.H.4
-
72
-
-
79959784386
-
Structure of the response regulator PhoP from Mycobacterium tuberculosis reveals a dimer through the receiver domain
-
Menon, S., and Wang, S. (2011) Structure of the response regulator PhoP from Mycobacterium tuberculosis reveals a dimer through the receiver domain. Biochemistry 50, 5948-5957.
-
(2011)
Biochemistry
, vol.50
, pp. 5948-5957
-
-
Menon, S.1
Wang, S.2
-
73
-
-
70349541000
-
Biological insights from structures of two-component proteins
-
Gao, R., and Stock, A. M. (2009) Biological insights from structures of two-component proteins. Annu. Rev. Microbiol. 63, 133-154.
-
(2009)
Annu. Rev. Microbiol.
, vol.63
, pp. 133-154
-
-
Gao, R.1
Stock, A.M.2
-
74
-
-
78651282059
-
P2CS: A database of prokaryotic two-component systems
-
Barakat, M., Ortet, P., and Whitworth, D. E. (2011) P2CS: A database of prokaryotic two-component systems. Nucleic Acids Res. 39, D771-D776.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D771-D776
-
-
Barakat, M.1
Ortet, P.2
Whitworth, D.E.3
-
75
-
-
0041859471
-
Playing to win at DNA computation
-
Tabor, J. J., and Ellington, A. D. (2003) Playing to win at DNA computation. Nat. Biotechnol. 21, 1013-1015.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 1013-1015
-
-
Tabor, J.J.1
Ellington, A.D.2
-
76
-
-
84869055472
-
Modular gene-circuit design takes two steps forward
-
Tabor, J. J. (2012) Modular gene-circuit design takes two steps forward. Nat. Methods 9, 1061-1063.
-
(2012)
Nat. Methods
, vol.9
, pp. 1061-1063
-
-
Tabor, J.J.1
-
77
-
-
84897482912
-
Programmable bacteria detect and record an environmental signal in the mammalian gut
-
Kotula, J. W., Kerns, S. J., Shaket, L. A., Siraj, L., Collins, J. J., Way, J. C., and Silver, P. A. (2014) Programmable bacteria detect and record an environmental signal in the mammalian gut. Proc. Natl. Acad. Sci. U.S.A. 111, 4838-4843.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 4838-4843
-
-
Kotula, J.W.1
Kerns, S.J.2
Shaket, L.A.3
Siraj, L.4
Collins, J.J.5
Way, J.C.6
Silver, P.A.7
-
78
-
-
0003903343
-
-
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
-
Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
-
(1989)
Molecular Cloning: A Laboratory Manual, 2nd Ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
79
-
-
56649114274
-
A one pot, one step, precision cloning method with high throughput capability
-
Engler, C., Kandzia, R., and Marillonnet, S. (2008) A one pot, one step, precision cloning method with high throughput capability. PLoS One 3, e3647.
-
(2008)
PLoS One
, vol.3
, pp. e3647
-
-
Engler, C.1
Kandzia, R.2
Marillonnet, S.3
|