A synthetic approach reveals extensive tunability of auxin signaling

Plant Physiology

Volumn 160, Issue 1, 2012, Pages 135-142

  Havens, Kyle A ^a   Guseman, Jessica M ^b   Jang, Seunghee S ^a   Pierre Jerome, Edith ^b   Bolten, Nick ^a   Klavins, Eric ^a   Nemhauser, Jennifer L ^b  

^a University of Washington   (United States)

^b UNIVERSITY OF WASHINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

SACCHAROMYCES CEREVISIAE;

EID: 84865848723     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.112.202184     Document Type: Article

References (26)

1. Bridge LJ, Mirams GR, Kieffer ML, King JR, Kepinski S (2012) Distinguishing possible mechanisms for auxin-mediated developmental control in Arabidopsis: models with two Aux/IAA and ARF proteins, and two target gene-sets. Math Biosci 235: 32-44
2. Brunoud G, Wells DM, Oliva M, Larrieu A, Mirabet V, Burrow AH, Beeckman T, Kepinski S, Traas J, Bennett MJ, et al (2012) A novel sensor to map auxin response and distribution at high spatio-temporal resolution. Nature 482: 103-106
3. Calderón Villalobos LI, Lee S, De Oliveira C, Ivetac A, Brandt W, Armitage L, Sheard LB, Tan X, Parry G, Mao H, et al (2012) A combinatorial TIR1/AFB-Aux/IAA co-receptor system for differential sensing of auxin. Nat Chem Biol 8: 477-485
4. Chapman EJ, Estelle M (2009) Mechanism of auxin-regulated gene expression in plants. Annu Rev Genet 43: 265-285
5. Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16: 735-743
6. Del Bianco M, Kepinski S (2011) Context, specificity, and self-organization in auxin response. Cold Spring Harb Perspect Biol 3: a001578
7. Dharmasiri N, Dharmasiri S, Estelle M (2005a) The F-box protein TIR1 is an auxin receptor. Nature 435: 441-445
8. Dharmasiri N, Dharmasiri S, Weijers D, Lechner E, Yamada M, Hobbie L, Ehrismann JS, Jürgens G, Estelle M (2005b) Plant development is regulated by a family of auxin receptor F box proteins. Dev Cell 9: 109-119
9. Dreher KA, Brown J, Saw RE, Callis J (2006) The Arabidopsis Aux/IAA protein family has diversified in degradation and auxin responsiveness. Plant Cell 18: 699-714
10. Gibson DG, Young L, Chuang R-Y, Venter JC, Hutchison CA III, Smith HO (2009) Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat Methods 6: 343-345
11. Gietz RD, Woods RA (2002) Transformation of yeast by lithium acetate/singlestranded carrier DNA/polyethylene glycol method. Methods Enzymol 350: 87-96
12. Harrison SJ, Mott EK, Parsley K, Aspinall S, Gray JC, Cottage A (2006) A rapid and robust method of identifying transformed Arabidopsis thaliana seedlings following floral dip transformation. Plant Methods 2: 19
13. Kepinski S, Leyser O (2005) The Arabidopsis F-box protein TIR1 is an auxin receptor. Nature 435: 446-451
14. Lokerse AS, Weijers D (2009) Auxin enters the matrix: assembly of response machineries for specific outputs. Curr Opin Plant Biol 12: 520-526
15. Mettetal JT, Muzzey D, Gómez-Uribe C, van Oudenaarden A (2008) The frequency dependence of osmo-adaptation in Saccharomyces cerevisiae. Science 319: 482-484
16. Muto H, Watahiki MK, Nakamoto D, Kinjo M, Yamamoto KT (2007) Specificity and similarity of functions of the Aux/IAA genes in auxin signaling of Arabidopsis revealed by promoter-exchange experiments among MSG2/IAA19, AXR2/IAA7, and SLR/IAA14. Plant Physiol 144: 187-196
17. Nishimura K, Fukagawa T, Takisawa H, Kakimoto T, Kanemaki M (2009) An auxin-based degron system for the rapid depletion of proteins in nonplant cells. Nat Methods 6: 917-922
18. Parry G, Calderon-Villalobos LI, Prigge M, Peret B, Dharmasiri S, Itoh H, Lechner E, Gray WM, Bennett M, Estelle M (2009) Complex regulation of the TIR1/AFB family of auxin receptors. Proc Natl Acad Sci USA 106: 22540-22545
19. Pierce NW, Kleiger G, Shan SO, Deshaies RJ (2009) Detection of sequential polyubiquitylation on a millisecond timescale. Nature 462: 615-619
20. Ramos JA, Zenser N, Leyser O, Callis J (2001) Rapid degradation of auxin/indoleacetic acid proteins requires conserved amino acids of domain II and is proteasome dependent. Plant Cell 13: 2349-2360
21. Reinhardt D, Pesce E-R, Stieger P, Mandel T, Baltensperger K, Bennett M, Traas J, Friml J, Kuhlemeier C (2003) Regulation of phyllotaxis by polar auxin transport. Nature 426: 255-260
22. Stewart JL, Nemhauser JL (2010) Do trees grow on money? Auxin as the currency of the cellular economy. Cold Spring Harb Perspect Biol 2: a001420
23. Tan X, Calderon-Villalobos LI, Sharon M, Zheng C, Robinson CV, Estelle M, Zheng N (2007) Mechanism of auxin perception by the TIR1 ubiquitin ligase. Nature 446: 640-645
24. Vernoux T, Brunoud G, Farcot E, Morin V, Van den Daele H, Legrand J, Oliva M, Das P, Larrieu A, Wells D, et al (2011) The auxin signaling network translates dynamic input into robust patterning at the shoot apex. Mol Syst Biol 7: 508
25. Weijers D, Benkova E, Jäger KE, Schlereth A, Hamann T, Kientz M, Wilmoth JC, Reed JW, Jürgens G (2005) Developmental specificity of auxin response by pairs of ARF and Aux/IAA transcriptional regulators. EMBO J 24: 1874-1885
26. Williamson A, Banerjee S, Zhu X, Philipp I, Iavarone AT, Rape M (2011) Regulation of ubiquitin chain initiation to control the timing of substrate degradation. Mol Cell 42: 744-757